FF:10778-110G4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005769 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007903;DRR008775;DRZ000200;DRZ001585;DRZ011550;DRZ012935 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000057,CL:0000632 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:3119,DOID:3350,DOID:3571 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100224,FF:0103513,FF:0103519 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100224 | |fonse_cell_line=FF:0100224 | ||
|fonse_cell_line_closure=FF:0100224 | |fonse_cell_line_closure=FF:0100224 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10778-110G4 | |id=FF:10778-110G4 | ||
|is_a=DOID:3350;;DOID:3571;;EFO:0002091;;FF: | |is_a=DOID:3350;;DOID:3571;;EFO:0002091;;FF:0000210;;FF:0103519 | ||
|is_obsolete= | |||
|library_id=CNhs11868 | |||
|library_id_phase_based=2:CNhs11868 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10778 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10778 | |||
|name=hepatic mesenchymal tumor cell line:LI90 | |name=hepatic mesenchymal tumor cell line:LI90 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11868,LSID830,release010,COMPLETED | |profile_hcage=CNhs11868,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0668173304391185,0,0,0,0,-0.026683369208149,0,0.140848634773887,-0.058708292308913,0,0,0,0,0,0,0,0,0,0,0,0,0,0.346611288794873,0,0,0,0,0,0.1377219635068,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.133634660878237,0,0.420600500943542,0,0.133634660878237,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.133634660878237,0,0.083258855268568,0,0.0366422996356319,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0606146817333978,0,0,0,0,0,0,0.213873208359907,0.0668173304391185,0,0,-0.00773488980367754,-0.052071834053217,0,0.499934299143301,0.0668173304391185,0.546801581842338,-0.0980353512377064,0.0461800595256519,0,0,0,0.133634660878237,0,0,0.133634660878237,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.133634660878237,0,0,0.197621558862519,0.218115125449432,0,0,0,0,0,0 | |||
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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=53.03574 | |rna_weight_ug=53.03574 | ||
|sample_age=55 | |sample_age=55 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb0160 | |sample_cell_catalog=jcrb0160 | ||
|sample_cell_line=LI90 | |sample_cell_line=LI90 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.15162057456676e-223!GO:0005737;cytoplasm;2.71546363481748e-176!GO:0043226;organelle;4.41018803156871e-144!GO:0043229;intracellular organelle;7.60316663290616e-144!GO:0043231;intracellular membrane-bound organelle;3.03507751482726e-139!GO:0043227;membrane-bound organelle;6.27146834457114e-139!GO:0044444;cytoplasmic part;5.6669663476426e-129!GO:0044422;organelle part;1.3553948892096e-106!GO:0044446;intracellular organelle part;3.12809012012143e-105!GO:0005515;protein binding;1.6907924115128e-75!GO:0032991;macromolecular complex;9.10867397651343e-73!GO:0044238;primary metabolic process;2.49993900564116e-66!GO:0044237;cellular metabolic process;8.44562875492719e-65!GO:0043170;macromolecule metabolic process;4.12982627487775e-63!GO:0030529;ribonucleoprotein complex;3.38968126739568e-61!GO:0043233;organelle lumen;7.75141600863344e-55!GO:0031974;membrane-enclosed lumen;7.75141600863344e-55!GO:0019538;protein metabolic process;7.26008388385185e-51!GO:0031090;organelle membrane;1.60294783650889e-49!GO:0005739;mitochondrion;2.29100279098349e-48!GO:0003723;RNA binding;3.97791727336522e-48!GO:0044428;nuclear part;2.28084355400106e-47!GO:0044260;cellular macromolecule metabolic process;6.30001836399639e-46!GO:0044267;cellular protein metabolic process;1.10172384377314e-44!GO:0015031;protein transport;4.03209715772528e-43!GO:0033036;macromolecule localization;1.11402049600755e-42!GO:0016043;cellular component organization and biogenesis;2.57094816025014e-41!GO:0008104;protein localization;4.38837657705438e-40!GO:0045184;establishment of protein localization;4.44001182717425e-40!GO:0005634;nucleus;1.46686295932465e-39!GO:0005840;ribosome;1.57223291387785e-38!GO:0006412;translation;8.42969234334313e-38!GO:0043234;protein complex;3.34819162014644e-37!GO:0003735;structural constituent of ribosome;7.77845488182758e-35!GO:0046907;intracellular transport;4.72213581208502e-34!GO:0005829;cytosol;1.05111928129226e-33!GO:0044429;mitochondrial part;1.11671262791717e-33!GO:0009058;biosynthetic process;4.61063834068442e-33!GO:0009059;macromolecule biosynthetic process;8.00807930838965e-32!GO:0031981;nuclear lumen;3.48775185437123e-31!GO:0043283;biopolymer metabolic process;1.68397978339262e-30!GO:0031967;organelle envelope;2.8258856910258e-30!GO:0006396;RNA processing;3.91025302498223e-30!GO:0031975;envelope;5.87357865784187e-30!GO:0033279;ribosomal subunit;8.00558112873842e-30!GO:0044249;cellular biosynthetic process;4.39913809636018e-29!GO:0006886;intracellular protein transport;1.86105364696558e-27!GO:0016071;mRNA metabolic process;6.46670689675602e-27!GO:0010467;gene expression;2.0663461152629e-25!GO:0005783;endoplasmic reticulum;2.79818822480179e-25!GO:0008380;RNA splicing;5.83680683524393e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.55706364020106e-23!GO:0005740;mitochondrial envelope;1.05609107838859e-22!GO:0006397;mRNA processing;1.12596976570025e-22!GO:0012505;endomembrane system;2.02192745251827e-22!GO:0031966;mitochondrial membrane;1.67580656024293e-21!GO:0005794;Golgi apparatus;3.09494634543102e-21!GO:0051641;cellular localization;4.61436059011998e-21!GO:0051649;establishment of cellular localization;4.81542508894454e-21!GO:0019866;organelle inner membrane;7.69445739420903e-21!GO:0006996;organelle organization and biogenesis;8.58491223942446e-21!GO:0005654;nucleoplasm;1.10039185416926e-20!GO:0065003;macromolecular complex assembly;1.410452368008e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.37848951885695e-20!GO:0006119;oxidative phosphorylation;6.23609655256046e-20!GO:0005743;mitochondrial inner membrane;9.82340616202985e-20!GO:0006457;protein folding;1.41161033506998e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.56289965563726e-19!GO:0044432;endoplasmic reticulum part;2.70704286379105e-19!GO:0044445;cytosolic part;9.80599530534609e-19!GO:0000166;nucleotide binding;1.20563433705764e-18!GO:0043228;non-membrane-bound organelle;2.45397256639268e-18!GO:0043232;intracellular non-membrane-bound organelle;2.45397256639268e-18!GO:0044455;mitochondrial membrane part;3.6435879634296e-18!GO:0048193;Golgi vesicle transport;4.05920767015563e-18!GO:0022607;cellular component assembly;6.36251175576538e-18!GO:0048770;pigment granule;6.69777467045404e-18!GO:0042470;melanosome;6.69777467045404e-18!GO:0016462;pyrophosphatase activity;2.24069656917561e-17!GO:0044451;nucleoplasm part;2.43390807932922e-17!GO:0017111;nucleoside-triphosphatase activity;2.55429815724802e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.8312892537709e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;4.30709247203679e-17!GO:0005681;spliceosome;4.59030725638406e-17!GO:0015934;large ribosomal subunit;6.44043470739925e-17!GO:0008134;transcription factor binding;1.87196069903988e-16!GO:0016192;vesicle-mediated transport;1.04328360356356e-15!GO:0005746;mitochondrial respiratory chain;2.51829739215091e-15!GO:0043412;biopolymer modification;3.71482866081964e-15!GO:0006512;ubiquitin cycle;6.92030747198508e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;8.82038060895781e-15!GO:0016874;ligase activity;8.82038060895781e-15!GO:0051082;unfolded protein binding;1.61814220717238e-14!GO:0019941;modification-dependent protein catabolic process;1.83371034563549e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.83371034563549e-14!GO:0044257;cellular protein catabolic process;2.12788973378132e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.67915375221878e-14!GO:0022618;protein-RNA complex assembly;2.67915375221878e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.70017670926342e-14!GO:0044265;cellular macromolecule catabolic process;4.28050567520261e-14!GO:0006464;protein modification process;4.59099344018487e-14!GO:0032553;ribonucleotide binding;4.87682895532542e-14!GO:0032555;purine ribonucleotide binding;4.87682895532542e-14!GO:0017076;purine nucleotide binding;5.44629096382768e-14!GO:0015935;small ribosomal subunit;6.1127652348889e-14!GO:0006605;protein targeting;1.04268626294515e-13!GO:0043285;biopolymer catabolic process;1.36765658443556e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.81321661449044e-13!GO:0003954;NADH dehydrogenase activity;1.81321661449044e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.81321661449044e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.18890804734467e-13!GO:0031980;mitochondrial lumen;3.22312840853094e-13!GO:0005759;mitochondrial matrix;3.22312840853094e-13!GO:0005793;ER-Golgi intermediate compartment;5.12450842677187e-13!GO:0030163;protein catabolic process;8.23725710527934e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.15448174081861e-12!GO:0008135;translation factor activity, nucleic acid binding;1.19949556564502e-12!GO:0005789;endoplasmic reticulum membrane;1.29142858356669e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.39199555582632e-12!GO:0009057;macromolecule catabolic process;1.58825448237651e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.95746262389644e-12!GO:0051186;cofactor metabolic process;4.54926651022812e-12!GO:0043687;post-translational protein modification;8.22717207292603e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.2548666359299e-11!GO:0045271;respiratory chain complex I;1.2548666359299e-11!GO:0005747;mitochondrial respiratory chain complex I;1.2548666359299e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.25958267204574e-11!GO:0042773;ATP synthesis coupled electron transport;1.25958267204574e-11!GO:0048523;negative regulation of cellular process;1.68510163490385e-11!GO:0012501;programmed cell death;2.40349186170773e-11!GO:0003712;transcription cofactor activity;2.81698006083249e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.71054724193972e-11!GO:0044248;cellular catabolic process;3.71054724193972e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.42094253757641e-11!GO:0006915;apoptosis;8.7842724524169e-11!GO:0005730;nucleolus;1.00448217934804e-10!GO:0005524;ATP binding;1.23839937657009e-10!GO:0006259;DNA metabolic process;1.96076538476994e-10!GO:0044431;Golgi apparatus part;2.17713811729436e-10!GO:0032559;adenyl ribonucleotide binding;2.49161640118093e-10!GO:0005761;mitochondrial ribosome;2.59890512643825e-10!GO:0000313;organellar ribosome;2.59890512643825e-10!GO:0019787;small conjugating protein ligase activity;2.74817504622191e-10!GO:0030554;adenyl nucleotide binding;3.61200365855791e-10!GO:0008219;cell death;4.17827456828154e-10!GO:0016265;death;4.17827456828154e-10!GO:0008639;small protein conjugating enzyme activity;4.59082711231892e-10!GO:0048519;negative regulation of biological process;7.33574598572516e-10!GO:0004842;ubiquitin-protein ligase activity;8.03102179714406e-10!GO:0003743;translation initiation factor activity;8.29155924465632e-10!GO:0005788;endoplasmic reticulum lumen;9.01023008223106e-10!GO:0016070;RNA metabolic process;1.46753618357994e-09!GO:0006732;coenzyme metabolic process;1.50565362728666e-09!GO:0006413;translational initiation;2.00309852021103e-09!GO:0006913;nucleocytoplasmic transport;2.03099790702918e-09!GO:0009055;electron carrier activity;2.57424273903725e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.16235920413118e-09!GO:0006446;regulation of translational initiation;3.71985125866335e-09!GO:0051169;nuclear transport;4.35746993064087e-09!GO:0003676;nucleic acid binding;6.22533324021e-09!GO:0005768;endosome;6.37564256209228e-09!GO:0006888;ER to Golgi vesicle-mediated transport;7.04325676270374e-09!GO:0009259;ribonucleotide metabolic process;8.31348779633882e-09!GO:0016881;acid-amino acid ligase activity;8.58508490036706e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.03931495970497e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;9.73003347539253e-09!GO:0000375;RNA splicing, via transesterification reactions;9.73003347539253e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.73003347539253e-09!GO:0008565;protein transporter activity;1.14653209802923e-08!GO:0007049;cell cycle;1.3652064894898e-08!GO:0016887;ATPase activity;2.35610158300224e-08!GO:0003924;GTPase activity;2.40297620888475e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.43189004667551e-08!GO:0005635;nuclear envelope;2.68459368888789e-08!GO:0006163;purine nucleotide metabolic process;2.90173430071121e-08!GO:0009150;purine ribonucleotide metabolic process;2.90173430071121e-08!GO:0042623;ATPase activity, coupled;3.22200488998752e-08!GO:0016604;nuclear body;3.22835750986969e-08!GO:0030120;vesicle coat;3.54768231618777e-08!GO:0030662;coated vesicle membrane;3.54768231618777e-08!GO:0006366;transcription from RNA polymerase II promoter;3.63236118778498e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.66680814752601e-08!GO:0031965;nuclear membrane;4.38298244294137e-08!GO:0009260;ribonucleotide biosynthetic process;7.21229715905789e-08!GO:0009152;purine ribonucleotide biosynthetic process;7.6966110842851e-08!GO:0006164;purine nucleotide biosynthetic process;8.09583053612623e-08!GO:0003714;transcription corepressor activity;8.65264135569247e-08!GO:0050794;regulation of cellular process;9.26890560400828e-08!GO:0009141;nucleoside triphosphate metabolic process;9.51814197987916e-08!GO:0009142;nucleoside triphosphate biosynthetic process;9.51814197987916e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.51814197987916e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.70297661053142e-08!GO:0009144;purine nucleoside triphosphate metabolic process;9.70297661053142e-08!GO:0015986;ATP synthesis coupled proton transport;1.03138903129328e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.03138903129328e-07!GO:0000139;Golgi membrane;1.14233932837009e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.21453533653168e-07!GO:0017038;protein import;1.55359043692758e-07!GO:0006461;protein complex assembly;1.66932611591788e-07!GO:0006793;phosphorus metabolic process;2.26581667956039e-07!GO:0006796;phosphate metabolic process;2.26581667956039e-07!GO:0031252;leading edge;2.3911170521675e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.4050036620581e-07!GO:0043069;negative regulation of programmed cell death;2.58478158949415e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.58478158949415e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.58478158949415e-07!GO:0044453;nuclear membrane part;2.93671101060614e-07!GO:0051246;regulation of protein metabolic process;2.97953537162188e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.367139715619e-07!GO:0019829;cation-transporting ATPase activity;3.44740107087103e-07!GO:0048475;coated membrane;3.56578882751665e-07!GO:0030117;membrane coat;3.56578882751665e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.62124415120453e-07!GO:0016607;nuclear speck;3.73229629084242e-07!GO:0031988;membrane-bound vesicle;4.03478917481775e-07!GO:0016564;transcription repressor activity;4.26083181025489e-07!GO:0046034;ATP metabolic process;5.08803562142461e-07!GO:0005798;Golgi-associated vesicle;5.9695594288637e-07!GO:0006916;anti-apoptosis;6.33654067743446e-07!GO:0030036;actin cytoskeleton organization and biogenesis;6.4509734911307e-07!GO:0009060;aerobic respiration;6.67600532311994e-07!GO:0043066;negative regulation of apoptosis;6.8944567158608e-07!GO:0042254;ribosome biogenesis and assembly;8.0535829943022e-07!GO:0006754;ATP biosynthetic process;1.12921051273864e-06!GO:0006753;nucleoside phosphate metabolic process;1.12921051273864e-06!GO:0051789;response to protein stimulus;1.42383492543858e-06!GO:0006986;response to unfolded protein;1.42383492543858e-06!GO:0043067;regulation of programmed cell death;1.44832019636168e-06!GO:0031982;vesicle;1.96977320147389e-06!GO:0031410;cytoplasmic vesicle;2.01632600399665e-06!GO:0005773;vacuole;2.2040417000926e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.34581271334553e-06!GO:0008361;regulation of cell size;2.37464152459528e-06!GO:0016310;phosphorylation;2.60700656523993e-06!GO:0045333;cellular respiration;2.75735304043948e-06!GO:0042981;regulation of apoptosis;2.88387933233158e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.36352489943044e-06!GO:0004812;aminoacyl-tRNA ligase activity;3.36352489943044e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.36352489943044e-06!GO:0030029;actin filament-based process;3.53534925719828e-06!GO:0051726;regulation of cell cycle;3.64230907516537e-06!GO:0016049;cell growth;3.67555381310218e-06!GO:0009056;catabolic process;3.71197354407009e-06!GO:0044440;endosomal part;3.72340298131284e-06!GO:0010008;endosome membrane;3.72340298131284e-06!GO:0022402;cell cycle process;3.82997260475479e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.95149572748345e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.28084704319788e-06!GO:0000074;regulation of progression through cell cycle;4.50307935427469e-06!GO:0016491;oxidoreductase activity;4.8035802500509e-06!GO:0005667;transcription factor complex;4.84359560046679e-06!GO:0016787;hydrolase activity;4.89668030248665e-06!GO:0043038;amino acid activation;5.43873380454477e-06!GO:0006418;tRNA aminoacylation for protein translation;5.43873380454477e-06!GO:0043039;tRNA aminoacylation;5.43873380454477e-06!GO:0004386;helicase activity;5.59127654096977e-06!GO:0000151;ubiquitin ligase complex;5.61483226162565e-06!GO:0051188;cofactor biosynthetic process;6.86882487263543e-06!GO:0031324;negative regulation of cellular metabolic process;6.98031418478936e-06!GO:0032446;protein modification by small protein conjugation;7.06775213970251e-06!GO:0005525;GTP binding;7.37123508714075e-06!GO:0008026;ATP-dependent helicase activity;7.58094660587543e-06!GO:0008092;cytoskeletal protein binding;8.20013448839593e-06!GO:0050789;regulation of biological process;8.68422423282352e-06!GO:0006974;response to DNA damage stimulus;8.73349694440079e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.43920248644061e-06!GO:0016567;protein ubiquitination;9.50463271299511e-06!GO:0051170;nuclear import;9.55355430230954e-06!GO:0045259;proton-transporting ATP synthase complex;1.01521348267446e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.05319194777726e-05!GO:0045786;negative regulation of progression through cell cycle;1.0748907912931e-05!GO:0005770;late endosome;1.13904331493961e-05!GO:0030133;transport vesicle;1.22346951117091e-05!GO:0001558;regulation of cell growth;1.24691565579133e-05!GO:0006399;tRNA metabolic process;1.28771819284557e-05!GO:0006606;protein import into nucleus;1.31417427047448e-05!GO:0065002;intracellular protein transport across a membrane;1.34857909278495e-05!GO:0005643;nuclear pore;1.70767243567336e-05!GO:0006099;tricarboxylic acid cycle;1.76004765802043e-05!GO:0046356;acetyl-CoA catabolic process;1.76004765802043e-05!GO:0006752;group transfer coenzyme metabolic process;1.78940464005963e-05!GO:0009117;nucleotide metabolic process;2.031011555858e-05!GO:0000323;lytic vacuole;2.05870628680523e-05!GO:0005764;lysosome;2.05870628680523e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.15486168040319e-05!GO:0006613;cotranslational protein targeting to membrane;2.15829816623466e-05!GO:0007005;mitochondrion organization and biogenesis;2.2255632981755e-05!GO:0016740;transferase activity;2.31590663614926e-05!GO:0009109;coenzyme catabolic process;2.48911115633061e-05!GO:0032561;guanyl ribonucleotide binding;2.80606515523921e-05!GO:0019001;guanyl nucleotide binding;2.80606515523921e-05!GO:0051187;cofactor catabolic process;2.83495241486823e-05!GO:0008654;phospholipid biosynthetic process;3.48105586548401e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.90276964703249e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.22494988192809e-05!GO:0006084;acetyl-CoA metabolic process;5.60447764147404e-05!GO:0048522;positive regulation of cellular process;5.87130945428317e-05!GO:0005905;coated pit;5.87130945428317e-05!GO:0016859;cis-trans isomerase activity;5.93475679292534e-05!GO:0030867;rough endoplasmic reticulum membrane;6.10881759611681e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.32352620230129e-05!GO:0016563;transcription activator activity;7.72870917444219e-05!GO:0046930;pore complex;7.87288775739877e-05!GO:0000245;spliceosome assembly;8.21269277429801e-05!GO:0006281;DNA repair;9.88017631020106e-05!GO:0009892;negative regulation of metabolic process;0.0001033265922758!GO:0005769;early endosome;0.000105300652111756!GO:0016853;isomerase activity;0.000108585009627626!GO:0003713;transcription coactivator activity;0.000110121267794447!GO:0033116;ER-Golgi intermediate compartment membrane;0.000111404722077449!GO:0006403;RNA localization;0.000114013890156048!GO:0007243;protein kinase cascade;0.000117170441817281!GO:0009108;coenzyme biosynthetic process;0.000117222030410493!GO:0004298;threonine endopeptidase activity;0.000123161723131929!GO:0050657;nucleic acid transport;0.000129505921040245!GO:0051236;establishment of RNA localization;0.000129505921040245!GO:0050658;RNA transport;0.000129505921040245!GO:0005762;mitochondrial large ribosomal subunit;0.000137715132357023!GO:0000315;organellar large ribosomal subunit;0.000137715132357023!GO:0015630;microtubule cytoskeleton;0.000140293486712075!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000140293486712075!GO:0043566;structure-specific DNA binding;0.000141971784224933!GO:0007010;cytoskeleton organization and biogenesis;0.000143482578842438!GO:0015980;energy derivation by oxidation of organic compounds;0.000152601558284642!GO:0006892;post-Golgi vesicle-mediated transport;0.000160572921506833!GO:0006612;protein targeting to membrane;0.000163283539177282!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000167103959540839!GO:0007264;small GTPase mediated signal transduction;0.000169421439405003!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000171004277523209!GO:0006091;generation of precursor metabolites and energy;0.000181647990659801!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000229529791189383!GO:0015399;primary active transmembrane transporter activity;0.000229529791189383!GO:0004576;oligosaccharyl transferase activity;0.000240407392846884!GO:0003697;single-stranded DNA binding;0.000274118248500398!GO:0044262;cellular carbohydrate metabolic process;0.000280918989182253!GO:0008250;oligosaccharyl transferase complex;0.000283871792538095!GO:0005048;signal sequence binding;0.000286540264327231!GO:0040008;regulation of growth;0.000303394487564794!GO:0030027;lamellipodium;0.000304676178179736!GO:0016481;negative regulation of transcription;0.000310691425884185!GO:0016044;membrane organization and biogenesis;0.000315907291918289!GO:0006323;DNA packaging;0.00032137627327346!GO:0045454;cell redox homeostasis;0.00032706060348359!GO:0000278;mitotic cell cycle;0.000333349331803952!GO:0030663;COPI coated vesicle membrane;0.000347610447526754!GO:0030126;COPI vesicle coat;0.000347610447526754!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000348877161608527!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000351961348078621!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000352759539212507!GO:0016568;chromatin modification;0.000380725573465885!GO:0009719;response to endogenous stimulus;0.000385170646320132!GO:0005885;Arp2/3 protein complex;0.00040949232498121!GO:0006364;rRNA processing;0.000419712584992646!GO:0003724;RNA helicase activity;0.000455973613189355!GO:0030176;integral to endoplasmic reticulum membrane;0.000480466751073385!GO:0043623;cellular protein complex assembly;0.000480565177680743!GO:0019867;outer membrane;0.000535136565497925!GO:0031968;organelle outer membrane;0.000551905847916531!GO:0006891;intra-Golgi vesicle-mediated transport;0.00061706836053563!GO:0030137;COPI-coated vesicle;0.000620013693866926!GO:0016072;rRNA metabolic process;0.000715480634988943!GO:0005813;centrosome;0.000715750460794379!GO:0009967;positive regulation of signal transduction;0.000719819738809776!GO:0018196;peptidyl-asparagine modification;0.000815767474187669!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000815767474187669!GO:0008047;enzyme activator activity;0.000863617220883818!GO:0051276;chromosome organization and biogenesis;0.000942481730581714!GO:0051427;hormone receptor binding;0.00098557817220629!GO:0001726;ruffle;0.00098557817220629!GO:0043492;ATPase activity, coupled to movement of substances;0.00103778064017926!GO:0031072;heat shock protein binding;0.00104261321515381!GO:0019899;enzyme binding;0.0010612607934421!GO:0045045;secretory pathway;0.001061769615022!GO:0016197;endosome transport;0.00106255254545676!GO:0045792;negative regulation of cell size;0.00116998260088269!GO:0030308;negative regulation of cell growth;0.00132379462300368!GO:0030134;ER to Golgi transport vesicle;0.00134479292026735!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00134479292026735!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00136097216189057!GO:0005815;microtubule organizing center;0.00141896417930717!GO:0051920;peroxiredoxin activity;0.0014443498514355!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00151107670817219!GO:0051028;mRNA transport;0.00152543755187393!GO:0065007;biological regulation;0.00162640501205712!GO:0035257;nuclear hormone receptor binding;0.00167411680122809!GO:0043021;ribonucleoprotein binding;0.00168920990718724!GO:0003779;actin binding;0.00169553354707064!GO:0004177;aminopeptidase activity;0.00172304246149517!GO:0030127;COPII vesicle coat;0.00179242849451821!GO:0012507;ER to Golgi transport vesicle membrane;0.00179242849451821!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00184293493242635!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0018632842639322!GO:0030132;clathrin coat of coated pit;0.00186671233993071!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00188341857997522!GO:0046474;glycerophospholipid biosynthetic process;0.00190537424315103!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00195666895058232!GO:0006260;DNA replication;0.00202702688706591!GO:0005791;rough endoplasmic reticulum;0.00210815156845422!GO:0005741;mitochondrial outer membrane;0.00215720302559139!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00229176361100419!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00229176361100419!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00229176361100419!GO:0030658;transport vesicle membrane;0.00238625649880565!GO:0016779;nucleotidyltransferase activity;0.00240783647877902!GO:0048518;positive regulation of biological process;0.00240783647877902!GO:0048500;signal recognition particle;0.0026546309015452!GO:0045892;negative regulation of transcription, DNA-dependent;0.00276883533670791!GO:0051168;nuclear export;0.00290880399924701!GO:0031418;L-ascorbic acid binding;0.00291772300827154!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00305944995169206!GO:0043284;biopolymer biosynthetic process;0.0030737516878185!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00341128706633316!GO:0009165;nucleotide biosynthetic process;0.00357577400422879!GO:0003899;DNA-directed RNA polymerase activity;0.00365885844317459!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00371128046727179!GO:0003729;mRNA binding;0.00377148545547382!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00378677847560375!GO:0007050;cell cycle arrest;0.00410931475630923!GO:0022890;inorganic cation transmembrane transporter activity;0.00421605907180935!GO:0051329;interphase of mitotic cell cycle;0.00425761522356159!GO:0046489;phosphoinositide biosynthetic process;0.00443913192370401!GO:0030659;cytoplasmic vesicle membrane;0.00443913192370401!GO:0031543;peptidyl-proline dioxygenase activity;0.00457870555743907!GO:0008186;RNA-dependent ATPase activity;0.00460690937654582!GO:0007030;Golgi organization and biogenesis;0.00461957626216023!GO:0004674;protein serine/threonine kinase activity;0.00466840235207372!GO:0048471;perinuclear region of cytoplasm;0.00470405252482526!GO:0019843;rRNA binding;0.00479233725547222!GO:0008139;nuclear localization sequence binding;0.00487882934161397!GO:0048487;beta-tubulin binding;0.00501175573868896!GO:0000314;organellar small ribosomal subunit;0.00516877878802766!GO:0005763;mitochondrial small ribosomal subunit;0.00516877878802766!GO:0006818;hydrogen transport;0.00530862198050618!GO:0017166;vinculin binding;0.00539769421705995!GO:0015992;proton transport;0.00566073100024545!GO:0045893;positive regulation of transcription, DNA-dependent;0.00569837504030202!GO:0051252;regulation of RNA metabolic process;0.00592231011512675!GO:0045926;negative regulation of growth;0.00592355567496983!GO:0030660;Golgi-associated vesicle membrane;0.00675830412516391!GO:0030521;androgen receptor signaling pathway;0.00686382162382118!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00686382162382118!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00698761825495999!GO:0035258;steroid hormone receptor binding;0.00698761825495999!GO:0007040;lysosome organization and biogenesis;0.00702283199071568!GO:0019798;procollagen-proline dioxygenase activity;0.00716492627809277!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00743205911163095!GO:0045047;protein targeting to ER;0.00743205911163095!GO:0043681;protein import into mitochondrion;0.00746829062815083!GO:0005096;GTPase activator activity;0.00766781209164346!GO:0044420;extracellular matrix part;0.00774721008846152!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00789390972790908!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00789390972790908!GO:0048468;cell development;0.00818512432845555!GO:0065009;regulation of a molecular function;0.00825959659950656!GO:0051325;interphase;0.0083391905370679!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00836375724456615!GO:0015002;heme-copper terminal oxidase activity;0.00836375724456615!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00836375724456615!GO:0004129;cytochrome-c oxidase activity;0.00836375724456615!GO:0032940;secretion by cell;0.00838480779493305!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00843363540979458!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00873658330358841!GO:0045941;positive regulation of transcription;0.00901166715632638!GO:0006839;mitochondrial transport;0.00913638833041542!GO:0046467;membrane lipid biosynthetic process;0.00918488591514561!GO:0006607;NLS-bearing substrate import into nucleus;0.00955865644189405!GO:0005581;collagen;0.00961796415687232!GO:0007242;intracellular signaling cascade;0.0100543566907397!GO:0044433;cytoplasmic vesicle part;0.0100707041120563!GO:0030518;steroid hormone receptor signaling pathway;0.0101182785229833!GO:0030118;clathrin coat;0.0101932839398178!GO:0031901;early endosome membrane;0.0102090075590007!GO:0008610;lipid biosynthetic process;0.0103681784378584!GO:0000059;protein import into nucleus, docking;0.010670474544337!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0110259120879465!GO:0004004;ATP-dependent RNA helicase activity;0.0111118119642668!GO:0003746;translation elongation factor activity;0.0113151552111571!GO:0006497;protein amino acid lipidation;0.0114011043861252!GO:0043488;regulation of mRNA stability;0.0114810918526951!GO:0043487;regulation of RNA stability;0.0114810918526951!GO:0006897;endocytosis;0.011503982735894!GO:0010324;membrane invagination;0.011503982735894!GO:0006595;polyamine metabolic process;0.0116589182073419!GO:0065004;protein-DNA complex assembly;0.0117837538730326!GO:0006383;transcription from RNA polymerase III promoter;0.0118240035044417!GO:0006414;translational elongation;0.011827714835191!GO:0006650;glycerophospholipid metabolic process;0.0119047668313223!GO:0051128;regulation of cellular component organization and biogenesis;0.0120719329584073!GO:0005801;cis-Golgi network;0.0124646464610793!GO:0019222;regulation of metabolic process;0.0125247642039096!GO:0005869;dynactin complex;0.0125247642039096!GO:0005774;vacuolar membrane;0.0129937599470046!GO:0006509;membrane protein ectodomain proteolysis;0.0134259006955734!GO:0033619;membrane protein proteolysis;0.0134259006955734!GO:0003711;transcription elongation regulator activity;0.0136626365730862!GO:0030880;RNA polymerase complex;0.0139188710775588!GO:0001725;stress fiber;0.0139188710775588!GO:0032432;actin filament bundle;0.0139188710775588!GO:0007265;Ras protein signal transduction;0.014105838510716!GO:0001527;microfibril;0.0141558751526784!GO:0008312;7S RNA binding;0.0143474857625998!GO:0042802;identical protein binding;0.0145151271512955!GO:0007006;mitochondrial membrane organization and biogenesis;0.0149744654064604!GO:0006402;mRNA catabolic process;0.0149744654064604!GO:0015631;tubulin binding;0.015140251125157!GO:0030041;actin filament polymerization;0.0154976191142864!GO:0009966;regulation of signal transduction;0.0155840034291462!GO:0007033;vacuole organization and biogenesis;0.0156623183752224!GO:0030833;regulation of actin filament polymerization;0.0157787740628173!GO:0050811;GABA receptor binding;0.016182261752082!GO:0000209;protein polyubiquitination;0.0161880838145865!GO:0031902;late endosome membrane;0.0169390373721204!GO:0030145;manganese ion binding;0.0169995424176395!GO:0046519;sphingoid metabolic process;0.0170510212426625!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0175616012136228!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0175616012136228!GO:0046483;heterocycle metabolic process;0.0179021811088987!GO:0016272;prefoldin complex;0.0189235733132522!GO:0051087;chaperone binding;0.019111256735303!GO:0012506;vesicle membrane;0.0192008492832196!GO:0031625;ubiquitin protein ligase binding;0.019341299234238!GO:0003690;double-stranded DNA binding;0.0200990268956868!GO:0016126;sterol biosynthetic process;0.020158389722592!GO:0006984;ER-nuclear signaling pathway;0.0202522330609784!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0203886001666979!GO:0008154;actin polymerization and/or depolymerization;0.0208026838285733!GO:0006626;protein targeting to mitochondrion;0.0210534127114887!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0210605129243476!GO:0031529;ruffle organization and biogenesis;0.0211781887893383!GO:0006950;response to stress;0.0213664883541462!GO:0031301;integral to organelle membrane;0.0213716031428579!GO:0006740;NADPH regeneration;0.0213880919271241!GO:0006098;pentose-phosphate shunt;0.0213880919271241!GO:0000339;RNA cap binding;0.0215727845994311!GO:0006333;chromatin assembly or disassembly;0.0217660666143348!GO:0051301;cell division;0.0218629743888432!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0218629743888432!GO:0050681;androgen receptor binding;0.0218629743888432!GO:0005586;collagen type III;0.0222713033572762!GO:0008022;protein C-terminus binding;0.0225956401325906!GO:0003756;protein disulfide isomerase activity;0.0228667098988116!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0228667098988116!GO:0005862;muscle thin filament tropomyosin;0.0235980168072449!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.023603113773043!GO:0016363;nuclear matrix;0.0241934584738312!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0245785611301687!GO:0000428;DNA-directed RNA polymerase complex;0.0245785611301687!GO:0042158;lipoprotein biosynthetic process;0.024613238355498!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0247809197873618!GO:0006352;transcription initiation;0.0247828224817261!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0252531788707361!GO:0000082;G1/S transition of mitotic cell cycle;0.0255705730329951!GO:0006979;response to oxidative stress;0.0256340252005195!GO:0018193;peptidyl-amino acid modification;0.0259856259877408!GO:0048144;fibroblast proliferation;0.0264486168407989!GO:0048145;regulation of fibroblast proliferation;0.0264486168407989!GO:0030032;lamellipodium biogenesis;0.0266083155878331!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0266083155878331!GO:0030384;phosphoinositide metabolic process;0.0268869447876963!GO:0030433;ER-associated protein catabolic process;0.0272751372267203!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0272751372267203!GO:0035035;histone acetyltransferase binding;0.0272751372267203!GO:0044437;vacuolar part;0.0274097422213896!GO:0008632;apoptotic program;0.0274104688227623!GO:0022415;viral reproductive process;0.0274592269404096!GO:0009112;nucleobase metabolic process;0.0285036770882592!GO:0033559;unsaturated fatty acid metabolic process;0.029590717151827!GO:0006636;unsaturated fatty acid biosynthetic process;0.029590717151827!GO:0006672;ceramide metabolic process;0.0296321016327984!GO:0007034;vacuolar transport;0.0296354554721814!GO:0030119;AP-type membrane coat adaptor complex;0.0298077261708131!GO:0006893;Golgi to plasma membrane transport;0.0301895639437752!GO:0016311;dephosphorylation;0.0301895639437752!GO:0005669;transcription factor TFIID complex;0.0305776122210672!GO:0022403;cell cycle phase;0.0307646152784625!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0308611763973732!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0309932660504751!GO:0007569;cell aging;0.0312400719975364!GO:0006354;RNA elongation;0.0312592975501985!GO:0008180;signalosome;0.031445850656522!GO:0016301;kinase activity;0.0314840009013879!GO:0005100;Rho GTPase activator activity;0.0319874353580278!GO:0004287;prolyl oligopeptidase activity;0.0319874353580278!GO:0005832;chaperonin-containing T-complex;0.0322505923571153!GO:0031371;ubiquitin conjugating enzyme complex;0.03268889645323!GO:0008286;insulin receptor signaling pathway;0.0328879531550288!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0336188118898185!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0336188118898185!GO:0005765;lysosomal membrane;0.0336188118898185!GO:0051287;NAD binding;0.0346127577173318!GO:0033673;negative regulation of kinase activity;0.0349815067339565!GO:0006469;negative regulation of protein kinase activity;0.0349815067339565!GO:0051272;positive regulation of cell motility;0.0349815067339565!GO:0040017;positive regulation of locomotion;0.0349815067339565!GO:0030125;clathrin vesicle coat;0.0351773914816899!GO:0030665;clathrin coated vesicle membrane;0.0351773914816899!GO:0005099;Ras GTPase activator activity;0.0352582027025489!GO:0000049;tRNA binding;0.0366112658220253!GO:0006506;GPI anchor biosynthetic process;0.0370723675246017!GO:0030522;intracellular receptor-mediated signaling pathway;0.0374760679046613!GO:0016251;general RNA polymerase II transcription factor activity;0.038765068248147!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0395557864610998!GO:0033043;regulation of organelle organization and biogenesis;0.0395557864610998!GO:0048146;positive regulation of fibroblast proliferation;0.0398047219754773!GO:0006505;GPI anchor metabolic process;0.0403015110602755!GO:0005684;U2-dependent spliceosome;0.0411943756819592!GO:0030911;TPR domain binding;0.0411943756819592!GO:0000902;cell morphogenesis;0.0411943756819592!GO:0032989;cellular structure morphogenesis;0.0411943756819592!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0414086627312388!GO:0051348;negative regulation of transferase activity;0.0414086627312388!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0414086627312388!GO:0019752;carboxylic acid metabolic process;0.0416261152360929!GO:0007160;cell-matrix adhesion;0.0421506723837924!GO:0031124;mRNA 3'-end processing;0.0423174555941426!GO:0005694;chromosome;0.0425902988615566!GO:0001666;response to hypoxia;0.0426085880246003!GO:0031589;cell-substrate adhesion;0.0433890586639363!GO:0006289;nucleotide-excision repair;0.0433890586639363!GO:0005083;small GTPase regulator activity;0.0433890586639363!GO:0032906;transforming growth factor-beta2 production;0.0433890586639363!GO:0032909;regulation of transforming growth factor-beta2 production;0.0433890586639363!GO:0006611;protein export from nucleus;0.0437704687519036!GO:0008234;cysteine-type peptidase activity;0.0439087300074815!GO:0005874;microtubule;0.0442227661234176!GO:0051101;regulation of DNA binding;0.0447214011718087!GO:0006082;organic acid metabolic process;0.0447214011718087!GO:0030131;clathrin adaptor complex;0.0464674298825756!GO:0030149;sphingolipid catabolic process;0.0472714866871593!GO:0005938;cell cortex;0.0477997312242965!GO:0007041;lysosomal transport;0.0479163371073356!GO:0003684;damaged DNA binding;0.0482560562571033!GO:0000785;chromatin;0.0485820760993894!GO:0006007;glucose catabolic process;0.0493463398415194 | |||
|sample_id=10778 | |sample_id=10778 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=HMGA1,2:3.76196590613;HSF1,2:2.06734380158;NKX2-2,8:1.99129792399;DBP:1.76255558389;HOX{A5,B5}:1.75887129628;MYBL2:1.75715643244;NKX3-1:1.69518805962;GLI1..3:1.65570918873;SRF:1.65377988812;EVI1:1.65003229952;TAL1_TCF{3,4,12}:1.55692687205;ZNF384:1.52786853767;XBP1:1.48535379859;FOXL1:1.4745550671;NKX3-2:1.41297492481;TEAD1:1.41086019576;POU3F1..4:1.40289148501;UFEwm:1.36695684371;HES1:1.3106913589;NFATC1..3:1.25005789086;TP53:1.23871371415;HIF1A:1.20891988765;PPARG:1.20472233871;TFAP4:1.18210369883;TOPORS:1.16255813738;KLF4:1.16220255582;ESR1:1.14423427963;TEF:1.10600037866;ADNP_IRX_SIX_ZHX:1.09033347577;PRDM1:1.06604297768;PITX1..3:1.05627946714;AIRE:1.0466550324;ALX4:1.0159436299;NR6A1:1.00554082906;HAND1,2:0.994528025236;TFAP2B:0.935830946811;PAX4:0.932022557033;TFAP2{A,C}:0.897338848464;GATA4:0.855982510149;TBX4,5:0.854606493596;NR3C1:0.843030802716;MTE{core}:0.837976960831;HMX1:0.830293508879;XCPE1{core}:0.822912122543;GCM1,2:0.807043552686;LHX3,4:0.806747999174;AHR_ARNT_ARNT2:0.795372274385;FOXA2:0.792734001172;NFIX:0.785386278322;GTF2A1,2:0.776288564353;HIC1:0.737211120065;HBP1_HMGB_SSRP1_UBTF:0.719680193344;NFE2L1:0.697713794941;EN1,2:0.6922528888;VSX1,2:0.672469938833;TFCP2:0.660411937688;POU1F1:0.650997649753;POU6F1:0.641220278924;PAX3,7:0.639463060431;HOX{A6,A7,B6,B7}:0.636231442583;ATF6:0.615559971027;HOXA9_MEIS1:0.608026750703;RXRA_VDR{dimer}:0.606469394361;ZNF423:0.573907221565;SOX17:0.551018498489;ZBTB16:0.540688440568;TLX1..3_NFIC{dimer}:0.526632257217;PAX8:0.521792742598;GTF2I:0.489633955147;MAZ:0.477633783343;EBF1:0.476697657724;HLF:0.440596781514;ZFP161:0.430910460063;MEF2{A,B,C,D}:0.401221992715;MAFB:0.391555265731;NKX2-1,4:0.373082648565;SPZ1:0.347062494994;ZNF238:0.335007820292;GZF1:0.325192607916;PAX1,9:0.303897639047;ONECUT1,2:0.299354552911;PATZ1:0.298003946178;PAX6:0.290732650786;AR:0.269663455651;ZBTB6:0.2679944866;RXR{A,B,G}:0.226266879802;TBP:0.218898802716;POU5F1:0.186034180243;IKZF1:0.177457447939;NKX2-3_NKX2-5:0.170599894378;NFE2L2:0.17010611493;NANOG{mouse}:0.168888584941;HOX{A4,D4}:0.168412711625;EGR1..3:0.165136705357;FOXP1:0.164966858656;MTF1:0.164297790727;HNF1A:0.151517826657;PAX5:0.150457968843;CRX:0.14433940388;STAT2,4,6:0.123579656547;MZF1:0.122369207561;ZIC1..3:0.117329622316;FOXD3:0.108977103587;MYFfamily:0.101939165735;MED-1{core}:0.0973765322709;ARID5B:0.0824113015667;REST:0.0498803753622;SMAD1..7,9:-0.00755929373947;ALX1:-0.00837014714901;JUN:-0.0359841183937;GFI1B:-0.0536466512155;IRF1,2:-0.0540322354737;LEF1_TCF7_TCF7L1,2:-0.0793101936501;TFDP1:-0.0834395637117;BACH2:-0.116437973931;SOX5:-0.130305798091;CREB1:-0.141613066063;ATF2:-0.148135945091;SP1:-0.14933392401;FOSL2:-0.163570394816;FOX{I1,J2}:-0.166162389499;FOS_FOS{B,L1}_JUN{B,D}:-0.173571849646;BPTF:-0.175621858963;NFKB1_REL_RELA:-0.179745619658;FOX{D1,D2}:-0.182088879385;NFE2:-0.198120048449;ZNF148:-0.218076823364;RUNX1..3:-0.265196973663;SOX2:-0.270475244873;IKZF2:-0.316337166908;CDC5L:-0.366252438561;GATA6:-0.368199993472;FOXP3:-0.408504751695;RORA:-0.415135298342;FOXN1:-0.42103772659;RREB1:-0.426423684442;ATF5_CREB3:-0.438534697321;STAT5{A,B}:-0.457167971486;ETS1,2:-0.475119253418;HNF4A_NR2F1,2:-0.487777695584;TLX2:-0.489031514798;RFX1:-0.490214721277;SPI1:-0.504776597526;PAX2:-0.507169879223;FOXO1,3,4:-0.519461372491;MYB:-0.530990010155;T:-0.530998814805;LMO2:-0.536557756278;FOXM1:-0.539508290361;TGIF1:-0.550916936802;FOX{F1,F2,J1}:-0.551359737215;CEBPA,B_DDIT3:-0.562581130981;CDX1,2,4:-0.583505355373;ELK1,4_GABP{A,B1}:-0.586001734698;PRRX1,2:-0.619115595645;ZNF143:-0.620357478063;SNAI1..3:-0.628929370991;SOX{8,9,10}:-0.631129715879;NHLH1,2:-0.633452771093;SPIB:-0.635672444108;ATF4:-0.640048882854;NKX6-1,2:-0.646450626685;IRF7:-0.660986070505;SREBF1,2:-0.708126616963;bHLH_family:-0.709845442741;BREu{core}:-0.721527325232;NRF1:-0.727179452218;DMAP1_NCOR{1,2}_SMARC:-0.772616495001;NANOG:-0.7814370945;NFIL3:-0.798540423309;ELF1,2,4:-0.821910977783;NR5A1,2:-0.886395514945;CUX2:-0.889119166655;E2F1..5:-0.940853171693;OCT4_SOX2{dimer}:-0.944220300395;ZEB1:-0.952055612191;POU2F1..3:-1.03873936586;NR1H4:-1.12803760214;RFX2..5_RFXANK_RFXAP:-1.13864024044;FOXQ1:-1.17636548402;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.20349448128;ESRRA:-1.23291448547;STAT1,3:-1.30562595952;NFY{A,B,C}:-1.33146922956;GFI1:-1.34367062905;YY1:-1.3537394608;EP300:-1.3652038981;PBX1:-1.38019152604;RBPJ:-1.52949365034;MYOD1:-1.82606482068;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.86652837228;PDX1:-1.88791334949 | |top_motifs=HMGA1,2:3.76196590613;HSF1,2:2.06734380158;NKX2-2,8:1.99129792399;DBP:1.76255558389;HOX{A5,B5}:1.75887129628;MYBL2:1.75715643244;NKX3-1:1.69518805962;GLI1..3:1.65570918873;SRF:1.65377988812;EVI1:1.65003229952;TAL1_TCF{3,4,12}:1.55692687205;ZNF384:1.52786853767;XBP1:1.48535379859;FOXL1:1.4745550671;NKX3-2:1.41297492481;TEAD1:1.41086019576;POU3F1..4:1.40289148501;UFEwm:1.36695684371;HES1:1.3106913589;NFATC1..3:1.25005789086;TP53:1.23871371415;HIF1A:1.20891988765;PPARG:1.20472233871;TFAP4:1.18210369883;TOPORS:1.16255813738;KLF4:1.16220255582;ESR1:1.14423427963;TEF:1.10600037866;ADNP_IRX_SIX_ZHX:1.09033347577;PRDM1:1.06604297768;PITX1..3:1.05627946714;AIRE:1.0466550324;ALX4:1.0159436299;NR6A1:1.00554082906;HAND1,2:0.994528025236;TFAP2B:0.935830946811;PAX4:0.932022557033;TFAP2{A,C}:0.897338848464;GATA4:0.855982510149;TBX4,5:0.854606493596;NR3C1:0.843030802716;MTE{core}:0.837976960831;HMX1:0.830293508879;XCPE1{core}:0.822912122543;GCM1,2:0.807043552686;LHX3,4:0.806747999174;AHR_ARNT_ARNT2:0.795372274385;FOXA2:0.792734001172;NFIX:0.785386278322;GTF2A1,2:0.776288564353;HIC1:0.737211120065;HBP1_HMGB_SSRP1_UBTF:0.719680193344;NFE2L1:0.697713794941;EN1,2:0.6922528888;VSX1,2:0.672469938833;TFCP2:0.660411937688;POU1F1:0.650997649753;POU6F1:0.641220278924;PAX3,7:0.639463060431;HOX{A6,A7,B6,B7}:0.636231442583;ATF6:0.615559971027;HOXA9_MEIS1:0.608026750703;RXRA_VDR{dimer}:0.606469394361;ZNF423:0.573907221565;SOX17:0.551018498489;ZBTB16:0.540688440568;TLX1..3_NFIC{dimer}:0.526632257217;PAX8:0.521792742598;GTF2I:0.489633955147;MAZ:0.477633783343;EBF1:0.476697657724;HLF:0.440596781514;ZFP161:0.430910460063;MEF2{A,B,C,D}:0.401221992715;MAFB:0.391555265731;NKX2-1,4:0.373082648565;SPZ1:0.347062494994;ZNF238:0.335007820292;GZF1:0.325192607916;PAX1,9:0.303897639047;ONECUT1,2:0.299354552911;PATZ1:0.298003946178;PAX6:0.290732650786;AR:0.269663455651;ZBTB6:0.2679944866;RXR{A,B,G}:0.226266879802;TBP:0.218898802716;POU5F1:0.186034180243;IKZF1:0.177457447939;NKX2-3_NKX2-5:0.170599894378;NFE2L2:0.17010611493;NANOG{mouse}:0.168888584941;HOX{A4,D4}:0.168412711625;EGR1..3:0.165136705357;FOXP1:0.164966858656;MTF1:0.164297790727;HNF1A:0.151517826657;PAX5:0.150457968843;CRX:0.14433940388;STAT2,4,6:0.123579656547;MZF1:0.122369207561;ZIC1..3:0.117329622316;FOXD3:0.108977103587;MYFfamily:0.101939165735;MED-1{core}:0.0973765322709;ARID5B:0.0824113015667;REST:0.0498803753622;SMAD1..7,9:-0.00755929373947;ALX1:-0.00837014714901;JUN:-0.0359841183937;GFI1B:-0.0536466512155;IRF1,2:-0.0540322354737;LEF1_TCF7_TCF7L1,2:-0.0793101936501;TFDP1:-0.0834395637117;BACH2:-0.116437973931;SOX5:-0.130305798091;CREB1:-0.141613066063;ATF2:-0.148135945091;SP1:-0.14933392401;FOSL2:-0.163570394816;FOX{I1,J2}:-0.166162389499;FOS_FOS{B,L1}_JUN{B,D}:-0.173571849646;BPTF:-0.175621858963;NFKB1_REL_RELA:-0.179745619658;FOX{D1,D2}:-0.182088879385;NFE2:-0.198120048449;ZNF148:-0.218076823364;RUNX1..3:-0.265196973663;SOX2:-0.270475244873;IKZF2:-0.316337166908;CDC5L:-0.366252438561;GATA6:-0.368199993472;FOXP3:-0.408504751695;RORA:-0.415135298342;FOXN1:-0.42103772659;RREB1:-0.426423684442;ATF5_CREB3:-0.438534697321;STAT5{A,B}:-0.457167971486;ETS1,2:-0.475119253418;HNF4A_NR2F1,2:-0.487777695584;TLX2:-0.489031514798;RFX1:-0.490214721277;SPI1:-0.504776597526;PAX2:-0.507169879223;FOXO1,3,4:-0.519461372491;MYB:-0.530990010155;T:-0.530998814805;LMO2:-0.536557756278;FOXM1:-0.539508290361;TGIF1:-0.550916936802;FOX{F1,F2,J1}:-0.551359737215;CEBPA,B_DDIT3:-0.562581130981;CDX1,2,4:-0.583505355373;ELK1,4_GABP{A,B1}:-0.586001734698;PRRX1,2:-0.619115595645;ZNF143:-0.620357478063;SNAI1..3:-0.628929370991;SOX{8,9,10}:-0.631129715879;NHLH1,2:-0.633452771093;SPIB:-0.635672444108;ATF4:-0.640048882854;NKX6-1,2:-0.646450626685;IRF7:-0.660986070505;SREBF1,2:-0.708126616963;bHLH_family:-0.709845442741;BREu{core}:-0.721527325232;NRF1:-0.727179452218;DMAP1_NCOR{1,2}_SMARC:-0.772616495001;NANOG:-0.7814370945;NFIL3:-0.798540423309;ELF1,2,4:-0.821910977783;NR5A1,2:-0.886395514945;CUX2:-0.889119166655;E2F1..5:-0.940853171693;OCT4_SOX2{dimer}:-0.944220300395;ZEB1:-0.952055612191;POU2F1..3:-1.03873936586;NR1H4:-1.12803760214;RFX2..5_RFXANK_RFXAP:-1.13864024044;FOXQ1:-1.17636548402;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.20349448128;ESRRA:-1.23291448547;STAT1,3:-1.30562595952;NFY{A,B,C}:-1.33146922956;GFI1:-1.34367062905;YY1:-1.3537394608;EP300:-1.3652038981;PBX1:-1.38019152604;RBPJ:-1.52949365034;MYOD1:-1.82606482068;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.86652837228;PDX1:-1.88791334949 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10778-110G4;search_select_hide=table117:FF:10778-110G4 | |||
}} | }} | ||
Latest revision as of 15:04, 3 June 2020
| Name: | hepatic mesenchymal tumor cell line:LI90 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11868 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11868
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11868
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.797 |
| 10 | 10 | 0.69 |
| 100 | 100 | 0.499 |
| 101 | 101 | 0.631 |
| 102 | 102 | 0.133 |
| 103 | 103 | 0.449 |
| 104 | 104 | 0.564 |
| 105 | 105 | 0.28 |
| 106 | 106 | 0.00377 |
| 107 | 107 | 0.00916 |
| 108 | 108 | 0.423 |
| 109 | 109 | 0.813 |
| 11 | 11 | 0.575 |
| 110 | 110 | 0.468 |
| 111 | 111 | 0.604 |
| 112 | 112 | 0.429 |
| 113 | 113 | 0.553 |
| 114 | 114 | 0.214 |
| 115 | 115 | 0.239 |
| 116 | 116 | 0.0206 |
| 117 | 117 | 0.261 |
| 118 | 118 | 0.757 |
| 119 | 119 | 0.0893 |
| 12 | 12 | 0.138 |
| 120 | 120 | 0.402 |
| 121 | 121 | 0.443 |
| 122 | 122 | 0.142 |
| 123 | 123 | 0.941 |
| 124 | 124 | 0.655 |
| 125 | 125 | 0.875 |
| 126 | 126 | 0.632 |
| 127 | 127 | 0.938 |
| 128 | 128 | 0.0527 |
| 129 | 129 | 0.352 |
| 13 | 13 | 0.0822 |
| 130 | 130 | 0.508 |
| 131 | 131 | 0.188 |
| 132 | 132 | 0.517 |
| 133 | 133 | 0.932 |
| 134 | 134 | 0.637 |
| 135 | 135 | 0.429 |
| 136 | 136 | 0.379 |
| 137 | 137 | 0.473 |
| 138 | 138 | 0.736 |
| 139 | 139 | 0.034 |
| 14 | 14 | 0.311 |
| 140 | 140 | 0.476 |
| 141 | 141 | 0.566 |
| 142 | 142 | 0.712 |
| 143 | 143 | 0.75 |
| 144 | 144 | 0.509 |
| 145 | 145 | 0.812 |
| 146 | 146 | 0.269 |
| 147 | 147 | 0.135 |
| 148 | 148 | 0.938 |
| 149 | 149 | 0.00502 |
| 15 | 15 | 0.692 |
| 150 | 150 | 0.0609 |
| 151 | 151 | 0.468 |
| 152 | 152 | 0.0338 |
| 153 | 153 | 0.63 |
| 154 | 154 | 0.354 |
| 155 | 155 | 0.0467 |
| 156 | 156 | 0.415 |
| 157 | 157 | 0.532 |
| 158 | 158 | 0.13 |
| 159 | 159 | 0.461 |
| 16 | 16 | 0.0937 |
| 160 | 160 | 0.655 |
| 161 | 161 | 0.978 |
| 162 | 162 | 0.864 |
| 163 | 163 | 0.551 |
| 164 | 164 | 0.0466 |
| 165 | 165 | 0.591 |
| 166 | 166 | 0.037 |
| 167 | 167 | 0.911 |
| 168 | 168 | 0.482 |
| 169 | 169 | 0.405 |
| 17 | 17 | 0.271 |
| 18 | 18 | 0.24 |
| 19 | 19 | 0.0761 |
| 2 | 2 | 0.161 |
| 20 | 20 | 0.403 |
| 21 | 21 | 0.421 |
| 22 | 22 | 0.637 |
| 23 | 23 | 0.005 |
| 24 | 24 | 0.316 |
| 25 | 25 | 0.139 |
| 26 | 26 | 0.498 |
| 27 | 27 | 0.974 |
| 28 | 28 | 0.416 |
| 29 | 29 | 0.465 |
| 3 | 3 | 0.545 |
| 30 | 30 | 0.724 |
| 31 | 31 | 0.392 |
| 32 | 32 | 2.84197e-14 |
| 33 | 33 | 0.183 |
| 34 | 34 | 0.674 |
| 35 | 35 | 0.921 |
| 36 | 36 | 0.0814 |
| 37 | 37 | 0.781 |
| 38 | 38 | 0.81 |
| 39 | 39 | 0.523 |
| 4 | 4 | 0.679 |
| 40 | 40 | 0.181 |
| 41 | 41 | 0.955 |
| 42 | 42 | 0.64 |
| 43 | 43 | 0.479 |
| 44 | 44 | 0.704 |
| 45 | 45 | 0.937 |
| 46 | 46 | 0.183 |
| 47 | 47 | 0.672 |
| 48 | 48 | 0.672 |
| 49 | 49 | 0.426 |
| 5 | 5 | 0.172 |
| 50 | 50 | 0.636 |
| 51 | 51 | 0.94 |
| 52 | 52 | 0.263 |
| 53 | 53 | 0.858 |
| 54 | 54 | 0.401 |
| 55 | 55 | 0.168 |
| 56 | 56 | 0.853 |
| 57 | 57 | 0.226 |
| 58 | 58 | 0.538 |
| 59 | 59 | 0.389 |
| 6 | 6 | 0.462 |
| 60 | 60 | 0.225 |
| 61 | 61 | 0.399 |
| 62 | 62 | 0.617 |
| 63 | 63 | 0.19 |
| 64 | 64 | 0.938 |
| 65 | 65 | 0.323 |
| 66 | 66 | 0.172 |
| 67 | 67 | 0.191 |
| 68 | 68 | 0.794 |
| 69 | 69 | 0.619 |
| 7 | 7 | 0.277 |
| 70 | 70 | 0.263 |
| 71 | 71 | 0.919 |
| 72 | 72 | 0.435 |
| 73 | 73 | 0.0756 |
| 74 | 74 | 0.0839 |
| 75 | 75 | 0.249 |
| 76 | 76 | 0.991 |
| 77 | 77 | 0.0684 |
| 78 | 78 | 0.988 |
| 79 | 79 | 0.0015 |
| 8 | 8 | 0.29 |
| 80 | 80 | 0.204 |
| 81 | 81 | 0.854 |
| 82 | 82 | 0.0927 |
| 83 | 83 | 0.592 |
| 84 | 84 | 0.789 |
| 85 | 85 | 9.40643e-4 |
| 86 | 86 | 0.916 |
| 87 | 87 | 0.832 |
| 88 | 88 | 0.608 |
| 89 | 89 | 0.352 |
| 9 | 9 | 0.778 |
| 90 | 90 | 0.452 |
| 91 | 91 | 0.538 |
| 92 | 92 | 0.0146 |
| 93 | 93 | 0.915 |
| 94 | 94 | 0.197 |
| 95 | 95 | 0.737 |
| 96 | 96 | 0.684 |
| 97 | 97 | 0.26 |
| 98 | 98 | 0.246 |
| 99 | 99 | 0.0192 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11868
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:3350 mesenchymal cell neoplasm
DOID:3571 liver cancer
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103519 LI90 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000327 (extracellular matrix secreting cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000632 (hepatic stellate cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3119 (gastrointestinal system cancer)
3350 (mesenchymal cell neoplasm)
3571 (liver cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100224 (liver cell line sample)
0103513 (hepatic stellate cell line sample)
0103519 (LI90 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)
