FF:10783-110G9: Difference between revisions

Latest revision as of 15:04, 3 June 2020

Name:	thyroid carcinoma cell line:TCO-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11872
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	thyroid
dev stage	NA
sex	male
age	unknown
cell type	unclassifiable
cell line	TCO-1
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005528

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11872		CAGE		DRX008026		DRR008898

Accession ID Hg19

Library id		BAM		CTSS
CNhs11872		DRZ000323		DRZ001708

Accession ID Hg38

Library id		BAM		CTSS
CNhs11872		DRZ011673		DRZ013058

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.271
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.392
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.223
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0932
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0168
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.126
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.127
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0462
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.321
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0462
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0222
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0462
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0879
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.396
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.126
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.268
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.126
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0879
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.161
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11872

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	9.93538e-4
MA0003.1	MA0003.1	0.138
MA0004.1	MA0004.1	0.661
MA0006.1	MA0006.1	0.748
MA0007.1	MA0007.1	0.417
MA0009.1	MA0009.1	0.895
MA0014.1	MA0014.1	0.784
MA0017.1	MA0017.1	0.0215
MA0018.2	MA0018.2	0.396
MA0019.1	MA0019.1	0.689
MA0024.1	MA0024.1	0.00117
MA0025.1	MA0025.1	0.216
MA0027.1	MA0027.1	0.235
MA0028.1	MA0028.1	2.47809e-7
MA0029.1	MA0029.1	0.701
MA0030.1	MA0030.1	0.958
MA0031.1	MA0031.1	0.673
MA0035.2	MA0035.2	0.186
MA0038.1	MA0038.1	0.0597
MA0039.2	MA0039.2	0.574
MA0040.1	MA0040.1	0.849
MA0041.1	MA0041.1	0.827
MA0042.1	MA0042.1	0.967
MA0043.1	MA0043.1	0.451
MA0046.1	MA0046.1	0.0358
MA0047.2	MA0047.2	0.618
MA0048.1	MA0048.1	0.111
MA0050.1	MA0050.1	0.846
MA0051.1	MA0051.1	0.31
MA0052.1	MA0052.1	0.333
MA0055.1	MA0055.1	0.0215
MA0057.1	MA0057.1	0.362
MA0058.1	MA0058.1	0.937
MA0059.1	MA0059.1	0.839
MA0060.1	MA0060.1	2.84936e-6
MA0061.1	MA0061.1	0.00456
MA0062.2	MA0062.2	2.90865e-9
MA0065.2	MA0065.2	0.0169
MA0066.1	MA0066.1	0.209
MA0067.1	MA0067.1	0.264
MA0068.1	MA0068.1	0.218
MA0069.1	MA0069.1	0.795
MA0070.1	MA0070.1	0.917
MA0071.1	MA0071.1	0.0726
MA0072.1	MA0072.1	0.12
MA0073.1	MA0073.1	0.918
MA0074.1	MA0074.1	0.773
MA0076.1	MA0076.1	3.8317e-8
MA0077.1	MA0077.1	0.99
MA0078.1	MA0078.1	0.22
MA0079.2	MA0079.2	0.767
MA0080.2	MA0080.2	5.59751e-8
MA0081.1	MA0081.1	0.745
MA0083.1	MA0083.1	0.611
MA0084.1	MA0084.1	0.966
MA0087.1	MA0087.1	0.0973
MA0088.1	MA0088.1	0.122
MA0090.1	MA0090.1	0.102
MA0091.1	MA0091.1	0.0025
MA0092.1	MA0092.1	0.243
MA0093.1	MA0093.1	0.557
MA0099.2	MA0099.2	0.999
MA0100.1	MA0100.1	0.568
MA0101.1	MA0101.1	0.166
MA0102.2	MA0102.2	0.00511
MA0103.1	MA0103.1	0.0841
MA0104.2	MA0104.2	0.633
MA0105.1	MA0105.1	2.73792e-4
MA0106.1	MA0106.1	0.84
MA0107.1	MA0107.1	0.0551
MA0108.2	MA0108.2	0.0797
MA0111.1	MA0111.1	0.548
MA0112.2	MA0112.2	6.94729e-4
MA0113.1	MA0113.1	0.21
MA0114.1	MA0114.1	0.0773
MA0115.1	MA0115.1	0.755
MA0116.1	MA0116.1	0.00249
MA0117.1	MA0117.1	0.283
MA0119.1	MA0119.1	0.982
MA0122.1	MA0122.1	0.772
MA0124.1	MA0124.1	0.2
MA0125.1	MA0125.1	0.677
MA0131.1	MA0131.1	0.108
MA0135.1	MA0135.1	0.129
MA0136.1	MA0136.1	0.0377
MA0137.2	MA0137.2	0.652
MA0138.2	MA0138.2	0.223
MA0139.1	MA0139.1	0.868
MA0140.1	MA0140.1	0.654
MA0141.1	MA0141.1	0.174
MA0142.1	MA0142.1	0.0564
MA0143.1	MA0143.1	0.0115
MA0144.1	MA0144.1	0.444
MA0145.1	MA0145.1	0.094
MA0146.1	MA0146.1	0.0227
MA0147.1	MA0147.1	0.61
MA0148.1	MA0148.1	0.46
MA0149.1	MA0149.1	0.103
MA0150.1	MA0150.1	0.0596
MA0152.1	MA0152.1	0.48
MA0153.1	MA0153.1	0.193
MA0154.1	MA0154.1	0.00152
MA0155.1	MA0155.1	0.0819
MA0156.1	MA0156.1	0.0679
MA0157.1	MA0157.1	0.925
MA0159.1	MA0159.1	0.143
MA0160.1	MA0160.1	0.0628
MA0162.1	MA0162.1	0.73
MA0163.1	MA0163.1	1.87462e-4
MA0164.1	MA0164.1	0.279
MA0258.1	MA0258.1	0.00646
MA0259.1	MA0259.1	0.202

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11872

Novel motif	Logo	P-value
1	1	0.249
10	10	0.671
100	100	0.41
101	101	0.678
102	102	0.959
103	103	0.084
104	104	0.941
105	105	0.0701
106	106	0.0413
107	107	0.117
108	108	0.859
109	109	0.682
11	11	0.159
110	110	0.575
111	111	0.12
112	112	0.0358
113	113	0.12
114	114	0.0182
115	115	0.79
116	116	0.592
117	117	0.446
118	118	0.641
119	119	0.0959
12	12	0.963
120	120	0.637
121	121	0.939
122	122	0.73
123	123	0.378
124	124	0.0199
125	125	0.903
126	126	0.718
127	127	0.638
128	128	0.00225
129	129	0.023
13	13	0.765
130	130	0.0744
131	131	0.533
132	132	0.774
133	133	0.214
134	134	0.177
135	135	0.111
136	136	0.116
137	137	0.168
138	138	0.522
139	139	8.94489e-5
14	14	0.361
140	140	0.165
141	141	0.0577
142	142	0.0521
143	143	0.103
144	144	0.875
145	145	0.311
146	146	0.406
147	147	0.989
148	148	0.0654
149	149	0.0589
15	15	0.143
150	150	0.826
151	151	0.294
152	152	0.477
153	153	0.634
154	154	0.549
155	155	0.334
156	156	0.22
157	157	0.173
158	158	0.0519
159	159	0.201
16	16	0.28
160	160	0.811
161	161	0.701
162	162	0.922
163	163	0.386
164	164	0.661
165	165	0.49
166	166	0.806
167	167	0.719
168	168	0.712
169	169	0.0199
17	17	0.118
18	18	0.14
19	19	0.104
2	2	0.212
20	20	0.217
21	21	0.359
22	22	0.151
23	23	0.0152
24	24	0.826
25	25	0.47
26	26	0.707
27	27	0.101
28	28	0.865
29	29	0.699
3	3	0.291
30	30	0.937
31	31	0.497
32	32	0.262
33	33	0.411
34	34	0.128
35	35	0.0752
36	36	0.836
37	37	0.208
38	38	0.378
39	39	0.867
4	4	0.698
40	40	0.795
41	41	0.0173
42	42	0.637
43	43	0.0874
44	44	0.378
45	45	0.251
46	46	0.128
47	47	0.282
48	48	0.609
49	49	0.0917
5	5	0.0473
50	50	0.893
51	51	0.248
52	52	0.11
53	53	0.62
54	54	0.271
55	55	0.248
56	56	0.281
57	57	0.574
58	58	0.287
59	59	0.0463
6	6	0.813
60	60	0.0861
61	61	0.753
62	62	0.0927
63	63	0.409
64	64	0.544
65	65	0.0552
66	66	0.063
67	67	0.979
68	68	0.56
69	69	0.482
7	7	0.303
70	70	0.336
71	71	0.23
72	72	0.28
73	73	0.505
74	74	0.568
75	75	0.196
76	76	0.462
77	77	0.197
78	78	0.384
79	79	0.209
8	8	0.556
80	80	0.0318
81	81	0.245
82	82	0.0178
83	83	0.53
84	84	0.5
85	85	0.0122
86	86	0.23
87	87	0.766
88	88	0.98
89	89	0.0399
9	9	0.181
90	90	0.177
91	91	0.347
92	92	0.0107
93	93	0.0588
94	94	0.138
95	95	0.533
96	96	0.127
97	97	0.724
98	98	0.528
99	99	0.44

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11872

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101610 thyroid cancer cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0002046 (thyroid gland)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101610 (thyroid cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0007123 (pharyngeal pouch 2)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005528
+|accession_numbers=CAGE;DRX008026;DRR008898;DRZ000323;DRZ001708;DRZ011673;DRZ013058
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002046,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002530,UBERON:0010317,UBERON:0000949
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.78!58.76!PAX8;;chr15:83953397..83953425,-!p1@BNC1!1.46!32.18!BNC1;;chr2:60780607..60780624,-!p2@BCL11A!1.34!63.24!BCL11A;;chr20:50179368..50179392,-!p2@NFATC2!1.33!26.35!NFATC2;;chr4:57522166..57522260,-!p2@HOPX!1.30!21.87!HOPX;;chr9:100615499..100615519,+!p1@FOXE1!1.29!18.61!FOXE1;;chr6:34204921..34204939,+!p3@HMGA1!1.22!463.67!HMGA1;;chr4:57522598..57522664,-!p3@HOPX!1.13!12.45!HOPX;;chr20:42543441..42543497,+!p1@TOX2!1.12!54.94!TOX2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.11!105.07!PPP1R13L;;chr2:60780753..60780800,-!p1@BCL11A!1.08!54.61!BCL11A;;chr11:65667884..65667895,-!p2@FOSL1!1.08!43.06!FOSL1;;chr8:106330656..106330684,+!p1@ZFPM2!1.08!29.38!ZFPM2;;chr12:77459306..77459365,-!p1@E2F7!1.06!133.21!E2F7;;chr17:8027418..8027432,-!p1@HES7!1.04!9.87!HES7;;chrY:21906594..21906622,-!p1@KDM5D!1.03!9.64!KDM5D;;chr13:73633131..73633149,+!p1@KLF5!1.01!101.48!KLF5;;chrY:2803415..2803468,+!p1@ZFY!1.00!9.08!ZFY;;chr3:25470156..25470227,+!p2@RARB!1.00!8.97!RARB;;chr5:50679228..50679288,+!p1@ISL1!0.98!8.63!ISL1;;chr5:2751762..2751784,-!p1@IRX2!0.98!8.52!IRX2;;chr3:25469724..25469773,+!p1@RARB!0.96!11.77!RARB;;chr11:65667846..65667868,-!p1@FOSL1!0.95!213.84!FOSL1;;chr14:36989427..36989442,-!p1@NKX2-1!0.95!7.96!NKX2-1;;chr3:24536253..24536328,-!p1@THRB!0.93!14.69!THRB;;chr19:45971246..45971265,+!p1@FOSB!0.91!137.47!FOSB;;chr4:57522674..57522699,-!p5@HOPX!0.91!7.06!HOPX;;chr19:53496768..53496799,-!p1@ZNF702P!0.90!11.10!ZNF702P;;chr3:32023232..32023273,+!p1@ZNF860!0.90!10.09!ZNF860;;chr6:10415276..10415341,-!p2@TFAP2A!0.90!8.52!TFAP2A;;chr9:14314131..14314147,-!p2@NFIB!0.89!39.47!NFIB;;chrX:55620497..55620512,+!p@chrX:55620497..55620512,+!0.89!6.73!FOXR2;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!35.66!CREB3L1;;chr20:42543506..42543549,+!p2@TOX2!0.88!16.48!TOX2;;chr15:67418119..67418162,+!p5@SMAD3!0.88!7.40!SMAD3;;chr8:67525443..67525459,-!p2@MYBL1!0.87!9.87!MYBL1;;chr14:36989358..36989378,-!p3@NKX2-1!0.86!6.28!NKX2-1;;chrX:66763856..66763896,+!p1@AR!0.84!8.86!AR;;chr8:106330696..106330719,+!p2@ZFPM2!0.83!7.40!ZFPM2;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.80!54.50!ZNF595;;chr17:17726907..17726958,-!p2@SREBF1!0.80!35.88!SREBF1;;chr12:80084167..80084197,-!p5@PAWR!0.80!13.23!PAWR;;chr4:57522513..57522548,-!p4@HOPX!0.80!5.38!HOPX;;chr5:321810..321877,+!p1@AHRR!0.78!17.16!AHRR;;chr11:120107344..120107351,+!p1@POU2F3!0.77!6.06!POU2F3;;chr14:33403881..33403924,+!p1@NPAS3!0.77!4.93!NPAS3;;chr20:30433396..30433414,-!p1@FOXS1!0.77!4.93!FOXS1;;chr7:63505799..63505904,+!p1@ZNF727!0.77!4.82!ZNF727;;chr17:7590797..7590815,-!p1@TP53!0.76!228.97!TP53;;chr11:65686732..65686756,+!p2@DRAP1!0.76!21.98!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!0.76!8.52!CREB3L1;;chr11:31832658..31832681,-!p1@PAX6!0.76!4.71!PAX6;;chr15:96869255..96869291,+!p6@NR2F2!0.75!8.86!NR2F2;;chr15:83953373..83953386,-!p2@BNC1!0.75!4.60!BNC1;;chr4:109089095..109089144,-!p6@LEF1!0.75!4.60!LEF1;;chr15:67418047..67418093,+!p4@SMAD3!0.74!5.83!SMAD3;;chr3:24536332..24536358,-!p2@THRB!0.74!4.49!THRB;;chr17:41622765..41622821,-!p2@ETV4!0.73!6.95!ETV4;;chr3:169381420..169381535,-!p1@MECOM!0.73!5.27!MECOM;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.37!ETV4;;chr19:22605136..22605154,-!p1@ZNF98!0.73!4.37!ZNF98;;chr6:34204672..34204692,+!p1@HMGA1!0.72!542.61!HMGA1;;chr19:22817119..22817145,+!p1@ZNF492!0.72!7.51!ZNF492;;chr3:25469815..25469866,+!p3@RARB!0.72!4.26!RARB;;chr11:65686802..65686818,+!p6@DRAP1!0.71!7.74!DRAP1;;chr10:28032421..28032494,-!p2@MKX!0.71!4.15!MKX;;chr14:36989379..36989390,-!p8@NKX2-1!0.71!4.15!NKX2-1;;chr19:46271505..46271575,-!p2@SIX5!0.70!11.21!SIX5;;chr1:59249645..59249656,-!p4@JUN!0.70!11.10!JUN;;chr5:150284532..150284549,-!p1@ZNF300!0.70!8.97!ZNF300;;chr13:72441315..72441454,-!p1@DACH1!0.70!8.75!DACH1;;chr17:7388010..7388017,-!p5@ZBTB4!0.70!7.18!ZBTB4;;chr3:24536485..24536500,-!p3@THRB!0.70!4.04!THRB;;chr20:55204351..55204377,+!p1@TFAP2C!0.69!5.16!TFAP2C;;chr8:93115584..93115642,-!p5@RUNX1T1!0.69!3.92!RUNX1T1;;chr9:127533519..127533573,-!p2@NR6A1!0.67!4.60!NR6A1;;chr17:5015129..5015187,-!p1@ZNF232!0.66!21.98!ZNF232;;chr12:26277956..26277980,-!p1@BHLHE41!0.66!14.69!BHLHE41;;chr9:14314106..14314119,-!p5@NFIB!0.66!6.95!NFIB;;chr4:109088940..109089037,-!p4@LEF1!0.66!3.59!LEF1;;chr12:80084737..80084763,-!p3@PAWR!0.65!14.80!PAWR;;chr15:96875657..96875760,+!p14@NR2F2!0.65!6.17!NR2F2;;chr19:13136057..13136085,+!p11@NFIX!0.65!3.48!NFIX;;chr12:115121962..115121987,-!p1@TBX3!0.64!32.85!TBX3;;chr18:3448455..3448480,+!p5@TGIF1!0.64!6.84!TGIF1;;chr9:14313893..14313908,-!p7@NFIB!0.64!5.16!NFIB;;chrX:55620469..55620479,+!p@chrX:55620469..55620479,+!0.64!3.36!FOXR2;;chr19:58545454..58545498,+!p1@ZSCAN1!0.64!3.36!ZSCAN1;;chr14:36989336..36989354,-!p5@NKX2-1!0.64!3.36!NKX2-1;;chr5:176738887..176738934,-!p1@MXD3!0.63!25.34!MXD3;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.63!7.96!SOHLH2;;chr20:50159198..50159299,-!p1@NFATC2!0.63!5.16!NFATC2;;chr5:43067636..43067674,+!p6@ZNF131!0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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0007123,UBERON:0010316
 |fonse_cell_line=FF:0101610
 |fonse_cell_line_closure=FF:0101610
@@ Line 37: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/thyroid%2520carcinoma%2520cell%2520line%253aTCO-1.CNhs11872.10783-110G9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/thyroid%2520carcinoma%2520cell%2520line%253aTCO-1.CNhs11872.10783-110G9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/thyroid%2520carcinoma%2520cell%2520line%253aTCO-1.CNhs11872.10783-110G9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/thyroid%2520carcinoma%2520cell%2520line%253aTCO-1.CNhs11872.10783-110G9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/thyroid%2520carcinoma%2520cell%2520line%253aTCO-1.CNhs11872.10783-110G9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10783-110G9
 |is_a=EFO:0002091;;FF:0000210;;FF:0101610
 |is_obsolete=
+|library_id=CNhs11872
+|library_id_phase_based=2:CNhs11872
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10783
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10783
 |name=thyroid carcinoma cell line:TCO-1
 |namespace=FANTOM5
@@ Line 45: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11872,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=110
 |rna_catalog_number=
@@ Line 60: / Line 78: @@
 |rna_weight_ug=58.86351
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=jcrb0239
 |sample_cell_line=TCO-1
@@ Line 81: / Line 100: @@
 |top_motifs=NKX2-1,4:1.82611185439;ELK1,4_GABP{A,B1}:1.76532009911;TFDP1:1.45391933772;VSX1,2:1.19511573407;bHLH_family:1.13942418123;NKX3-1:1.13647567163;PAX6:1.09989403717;HBP1_HMGB_SSRP1_UBTF:0.960110376032;STAT1,3:0.904579553332;E2F1..5:0.904182588166;HIF1A:0.887450846179;ZNF143:0.843159384389;GFI1:0.832190964169;POU2F1..3:0.815848295114;NFY{A,B,C}:0.755175300602;ARID5B:0.696581751942;PITX1..3:0.604551626176;PPARG:0.598676310683;CDC5L:0.566367706569;POU1F1:0.560234802786;TEAD1:0.548218462788;FOXL1:0.544105809887;PAX5:0.513591959463;HIC1:0.481186270111;TLX1..3_NFIC{dimer}:0.471161821645;GCM1,2:0.458356860403;NRF1:0.449874101966;MTE{core}:0.443181676709;HOX{A4,D4}:0.428047297054;POU5F1:0.42468238825;FOXP1:0.419175960325;FOX{I1,J2}:0.416630923223;ZNF384:0.390348946393;YY1:0.367170963787;ELF1,2,4:0.357117638439;MYOD1:0.312527406868;AIRE:0.301001284214;TFAP2B:0.281218067218;NKX3-2:0.273605240349;AHR_ARNT_ARNT2:0.263195313472;NKX6-1,2:0.258720692691;RFX1:0.251204074194;EVI1:0.24553118808;TFAP2{A,C}:0.225591844914;GFI1B:0.218859937163;MYBL2:0.197335090136;FOX{D1,D2}:0.17812419836;POU3F1..4:0.1780310451;ONECUT1,2:0.173195541809;CDX1,2,4:0.169476698113;HMGA1,2:0.167584882822;ZNF148:0.166841966574;BREu{core}:0.155785736158;ZFP161:0.146483626606;XCPE1{core}:0.134142937778;PAX3,7:0.131742375801;EP300:0.129993944323;ZBTB16:0.128080052551;UFEwm:0.1264357631;HOXA9_MEIS1:0.125217693433;BACH2:0.124712193314;XBP1:0.122382169125;TP53:0.117093015048;FOXQ1:0.11705470723;PAX2:0.0885742042837;GLI1..3:0.0683952502997;FOS_FOS{B,L1}_JUN{B,D}:0.0648282432113;ZIC1..3:0.0636552764976;HOX{A5,B5}:0.0635775318946;SRF:0.060046253032;MTF1:0.0570665691456;MYB:0.0395504874072;ZBTB6:0.0357568480709;ADNP_IRX_SIX_ZHX:0.0252913894027;GTF2A1,2:0.0199170129195;LHX3,4:0.00660092427648;MAZ:-0.00329020400025;MEF2{A,B,C,D}:-0.00443330040647;SP1:-0.0180469628468;EGR1..3:-0.0430722216;FOXM1:-0.0482017580984;TEF:-0.0490913796561;NR6A1:-0.0631278068789;PRDM1:-0.0682158518929;TOPORS:-0.0710155489647;LEF1_TCF7_TCF7L1,2:-0.0728051591499;GATA4:-0.0776474976405;MED-1{core}:-0.0844755584202;FOSL2:-0.0907938564837;TBP:-0.0965660361623;EN1,2:-0.115544924769;GZF1:-0.117681169032;ATF4:-0.119187870223;NFE2:-0.127426076272;FOXA2:-0.131071523578;ATF5_CREB3:-0.158583437809;REST:-0.163337251835;POU6F1:-0.167459276701;PAX4:-0.192772526295;FOXO1,3,4:-0.208310178347;HLF:-0.225988993233;STAT2,4,6:-0.232722681809;NR3C1:-0.245619710147;STAT5{A,B}:-0.250910609959;MZF1:-0.252049600693;PAX1,9:-0.254181551429;SNAI1..3:-0.256043916216;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.258309113965;CEBPA,B_DDIT3:-0.267575923159;LMO2:-0.274985039543;KLF4:-0.281547106973;PDX1:-0.288950176611;SOX{8,9,10}:-0.292843034914;CREB1:-0.295227455055;NFATC1..3:-0.29654907284;IKZF2:-0.297756410035;RXRA_VDR{dimer}:-0.301767770732;IRF1,2:-0.301820391323;FOXD3:-0.310793923238;IKZF1:-0.311996984233;NFIL3:-0.315440665302;RXR{A,B,G}:-0.319483524036;TBX4,5:-0.326290208878;BPTF:-0.326731532595;NKX2-3_NKX2-5:-0.333612774307;DBP:-0.337481192859;PATZ1:-0.35123417806;SPI1:-0.357481314244;RREB1:-0.368589070516;ZEB1:-0.379497540119;HNF1A:-0.388954034846;GTF2I:-0.389696962545;RBPJ:-0.392886125439;HES1:-0.417026175796;IRF7:-0.421187740196;OCT4_SOX2{dimer}:-0.427779796983;ETS1,2:-0.428499350622;TFCP2:-0.429238313123;TFAP4:-0.432599547335;FOXN1:-0.435152321071;GATA6:-0.435748200433;NHLH1,2:-0.440125440531;AR:-0.443441110612;NFKB1_REL_RELA:-0.44538218093;SPIB:-0.449135681922;HNF4A_NR2F1,2:-0.451744125521;HOX{A6,A7,B6,B7}:-0.45248657193;RUNX1..3:-0.460846736117;SPZ1:-0.474806286253;SOX5:-0.477768869925;NANOG:-0.478878422586;NFIX:-0.502628100564;NKX2-2,8:-0.536916851022;SOX17:-0.543642736877;CUX2:-0.544151630145;MYFfamily:-0.564395677361;PRRX1,2:-0.567520648351;SREBF1,2:-0.572749600456;RFX2..5_RFXANK_RFXAP:-0.600227812154;HMX1:-0.610369999887;ALX4:-0.613540490412;ALX1:-0.621982707317;JUN:-0.686078244517;PAX8:-0.689675497609;DMAP1_NCOR{1,2}_SMARC:-0.717103452379;SOX2:-0.732849547387;TAL1_TCF{3,4,12}:-0.743048249909;NFE2L2:-0.745432173556;ATF2:-0.748665212278;CRX:-0.779120926339;TLX2:-0.786604578591;ATF6:-0.828816528207;T:-0.849311819389;ZNF423:-0.857332358926;EBF1:-0.875579790951;NR5A1,2:-0.879160077628;SMAD1..7,9:-0.889393876609;PBX1:-0.889539812478;NFE2L1:-0.955115363849;HSF1,2:-0.959299441157;FOXP3:-0.989729268671;MAFB:-1.02219421877;NR1H4:-1.02455358577;ZNF238:-1.03017405272;HAND1,2:-1.04652202993;ESRRA:-1.07026956115;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.09206098855;RORA:-1.24462324366;ESR1:-1.33855361898;NANOG{mouse}:-1.3979898548;TGIF1:-1.41341819801;FOX{F1,F2,J1}:-1.45571060634
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10783-110G9;search_select_hide=table117:FF:10783-110G9
 }}

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FF:10783-110G9: Difference between revisions

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Latest revision as of 15:04, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0