FF:10783-110G9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005528 | ||
|accession_numbers=CAGE;DRX008026;DRR008898;DRZ000323;DRZ001708;DRZ011673;DRZ013058 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002046,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002530,UBERON:0010317,UBERON:0000949 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101610 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101610 | |fonse_cell_line=FF:0101610 | ||
|fonse_cell_line_closure=FF:0101610 | |fonse_cell_line_closure=FF:0101610 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/thyroid%2520carcinoma%2520cell%2520line%253aTCO-1.CNhs11872.10783-110G9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/thyroid%2520carcinoma%2520cell%2520line%253aTCO-1.CNhs11872.10783-110G9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/thyroid%2520carcinoma%2520cell%2520line%253aTCO-1.CNhs11872.10783-110G9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/thyroid%2520carcinoma%2520cell%2520line%253aTCO-1.CNhs11872.10783-110G9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/thyroid%2520carcinoma%2520cell%2520line%253aTCO-1.CNhs11872.10783-110G9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10783-110G9 | |id=FF:10783-110G9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101610 | ||
|is_obsolete= | |||
|library_id=CNhs11872 | |||
|library_id_phase_based=2:CNhs11872 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10783 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10783 | |||
|name=thyroid carcinoma cell line:TCO-1 | |name=thyroid carcinoma cell line:TCO-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11872,LSID830,release010,COMPLETED | |profile_hcage=CNhs11872,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0.00261594706164349,0,0,0,-0.114161746620937,0,-0.116435402477269,-0.0972782179867565,0,0,0,0.0461562834654493,0,0,0,0,0,0,0,0,0,0.149697297961973,0,0,0.0230781417327247,0,0,0.272292788912313,0,0,0.0904851389924632,0,0,0,0,0,0,0,0,0,0,0.0878749815719147,0,-0.0326115580921665,0.0878749815719147,0.0461562834654493,0,0,0,0,0,0,0.019722469673123,0,0,0,0,0,0.0358968524794802,0.0461562834654493,0.293539019872923,0,0,-0.00946864564118223,0,0,0,0,0,0,0,0,0.0461562834654493,0,0,0,0,0,0,0,0,0.136343127846582,0,0,0.00173399178270338,0.0145320116093064,0,0,-0.0239007384411123,0,0,0,-0.0584468268118252,-0.148229886147323,0,0.0878749815719147,0,0.251619495033887,0.0278996818593848,0.0049536806057725,0,0,0,0,0,0,0.0461562834654493,0,0,0,0,0,0,0,0,0,0,0.0153472704632017,0.19330810826772,0,0,-0.0551697773280274,-0.267649497039324,0,0,0.0461562834654493,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.125935033097091,0.0278996818593848,0.0461562834654493,0.251619495033887,0,0,0.0461562834654493,0,0,0,0.0878749815719147,0,0,-0.0538707670178444,0,-0.103835533571637,-0.143515142523472,0,0,0.163567763205847,0,0,0,0,0,0,0.125935033097091,0.125935033097091,0,0.0651882413151553,0,-0.0504125515893149,0.0358081173844018,0.0461562834654493,0,0,0.044342235464695,-0.305472230898407,0,0.073549166721104,-0.0221879776119189,0,0,0,0,-0.145839813690245,0,0.130740011240146,0.665266669049712,0.168919793012722,-0.109638488910437,0.0280535688556367,0,0,0,-0.480464481629612,0.0438417636457431,0,0,0.284491713734645,0.130779608560239,0,0,-0.000513200436106143,0,-0.013309929398468,0.0257992920799648,0,0.144085984403644,0,0,0,0,0,0.0878749815719147,0,0,0.125935033097091,0,0,-0.0574934668214365,0.136343127846582,0.0330978066951137,0.223441728771325,0.479772983099827,0,0.401368192269282,0,0.0211784468323598,0.482066545318898,0.0160878458680751,0.0058330621281069,0.166602956735038,0,0.193224728731314,-0.0156215158327785,-0.289252754109778,0.275179192801089,0.155618458939262,0.390178471575887,0,-0.089703210373746,-0.0745599503293155,0.0663385562193021,-0.0239007384411123,0.068298496302663,-0.349694124507315,0.142695367455297,0,0.0461562834654493,0,-0.103499591193434,0.00878224224341995,0.145261231527497,0.249083651664157,-0.074262653205815,0.142642350573331,-0.0272890796922678,-0.0354134794095252,0.0262540830162172,0.442799723720527,-0.0669050717810662,0.0330691547453434,0.401678484814128,0,0,0,-0.00980597271351265,0.0190671080731087,0.105243018344507,0.0230781417327247,0.144597818742407,0.057590772019723,0.0230781417327247,0.0516192245083212,0.0445830250486401,0.303020308310401,0,0.049798049681976,0.0461562834654493,0.0343734042828743,0.273420879219602,0,0.0878749815719147,0.0391653034469368,0.077475903031067,-0.00941383278421931,0,-0.09275166124669,0.0439374907859574,0.0387790862400366,0,-0.16157543543901,0,0,-0.0327467073424095,0,-0.199186111729725,-0.0916198187326192,-0.0390556632419116,-0.296459772294646,-0.0584468268118252,0.066809289629189,-0.0467364557063302,-0.00401108706832587,-0.171971818728993,0.0857801710676864,-0.0881268324752877,0,0.318221987448859,-0.269591020076193,0,0.088993149923099,0,-0.0803196805075796,0,-0.0425200071870713,0,0.103847427272459,0.189794618450056,-0.010834173449992,0.168986895419418,0,-0.0246121167442889,0.0871415168141618,0.0461562834654493,0.0499365842190638,0.00718918480565315,0.125935033097091,0.0429410249330807,-0.0926539162970884,-0.16549414439914,0.426498694855065,0,-0.008616769674206,0,0,-0.059759180814619,0.244296945335438,0,-0.114962967343024,-0.306182605902996,-0.108601585454067,0.077337034832786,0.0878749815719147,0,-0.0785369138901189,0.0195119361776646,0,-0.080265427802568,0.075125916197824,-0.0396231328328988,-0.0923996117705111,0.0230781417327247,-0.085544667721531,0,0,-0.0166010362489311,0,0.196143439315104,0.00879866940677905,0.0878749815719147,0.0610003581003835,0.00930692010695844,0,0,0,0,0.0028026261014327,0,0,0,0,0,0,0.0996578133073134,0.091410138547144,0.0461562834654493,-0.073900596951113,0,0.125935033097091,0,0,0,-0.073260234412094,0,0.251619495033887,0.0461382096735201,0,0.100424313094905,0.0461562834654493,0,0,0,0.412851877999913,0.167014123085647,0.125935033097091,0.0290640232186128,0,0,0,0,0.00173399178270338,0,0,0.0439374907859574,0.0804633648581225,-0.057730457053664,-0.0805408300492899,0,0,0,-0.116027671885546,0,0,0.510898367595382,0,-0.211910966740237,0,0.000815581324260184,0.0297140226576156,0,-0.00400598444214095,0.0062931020250733,0,-5.96279939106496e-05,-0.195502458032434,0.619730957967616,0,0.0461562834654493,-0.261347131789888,0,0,0.0853650834078059,0,0.125935033097091,0,0,0,0,0,0.258713882420839,0,-0.0210064041320356,0.09665405413386,0,0.0461562834654493,0,0.0461562834654493,0.0878749815719147,0.223441728771325,0.19330810826772,0,0,0,-0.138387181809012,0.0687026730577341,0.125935033097091,0,0,0,0,0,0,0.150582357855305,-0.00456396679385785,0,0,0,0.0878749815719147,0,0.0461562834654493,0,0,0.210943298295873,0,0,0.0461562834654493,0,0,0.293539019872923,0,0.0461562834654493,0,0,-0.194556435973513,0,0,-0.116435402477269,0,0.0461562834654493,0,0,0.0460908565725651,0,9.1221425412638e-06,0,0,0,0,0,0,0.00261594706164349,-0.503389313441182,0,0.125935033097091,0,0,0,0,0,0.0281870101043102,0,0,0,0,0.109557355062348,0,0,0,0.323658816341538,0,-0.114161746620937,0,0,0,0,0,0,0.0629675165485455,0,0.479772983099827,0,0,0.0230781417327247,0,0,0,0,0,0,0,0,0,0.84427888702761,0,0.01585567995904,0.0119671392429309,0,0,0.0574517429298255,0,0,0,0,0,0,0.0125970667574303,0,0,0,0,0,0,0,0.0230781417327247,0,0,0,0,0,0,0,0,0,0,0.19330810826772,0,0,0,0,0,0.0230781417327247,0.077476465731173,0,0,0,0,0.125935033097091,0,0,0.272292788912313,0.0461562834654493,0.223441728771325,0.0339022232965651,0,0.0265548024217883,0.0461562834654493,0,0,0,0.193343206799418,-0.016161174655394,-0.0490109230717578,0,0,0.0461562834654493,0.012630060036227,0,0.00593000488671355,0.087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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=58.86351 | |rna_weight_ug=58.86351 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb0239 | |sample_cell_catalog=jcrb0239 | ||
|sample_cell_line=TCO-1 | |sample_cell_line=TCO-1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.65508034941138e-260!GO:0043226;organelle;4.09289648719921e-209!GO:0043229;intracellular organelle;7.99250398271697e-209!GO:0043231;intracellular membrane-bound organelle;1.82589111829881e-201!GO:0043227;membrane-bound organelle;1.91421126354426e-201!GO:0005737;cytoplasm;1.8387412059871e-187!GO:0044422;organelle part;7.79689328060827e-149!GO:0044446;intracellular organelle part;2.95142933752942e-147!GO:0044444;cytoplasmic part;7.97526705322388e-124!GO:0032991;macromolecular complex;7.12540462674071e-105!GO:0030529;ribonucleoprotein complex;1.93852977817976e-97!GO:0005634;nucleus;1.47696937063846e-92!GO:0044238;primary metabolic process;9.40706348885078e-91!GO:0044237;cellular metabolic process;2.73680216538316e-89!GO:0043170;macromolecule metabolic process;2.56909524615376e-86!GO:0005515;protein binding;5.02736353350448e-82!GO:0044428;nuclear part;2.2312823342514e-79!GO:0043233;organelle lumen;6.23959220287542e-79!GO:0031974;membrane-enclosed lumen;6.23959220287542e-79!GO:0003723;RNA binding;9.30933047835691e-77!GO:0005739;mitochondrion;3.40540775290658e-69!GO:0005840;ribosome;2.65522596760942e-59!GO:0006412;translation;3.32545414672973e-56!GO:0016043;cellular component organization and biogenesis;6.82514282103731e-54!GO:0006396;RNA processing;2.0638144430214e-53!GO:0003735;structural constituent of ribosome;2.22062423825316e-52!GO:0043283;biopolymer metabolic process;3.48872188497212e-52!GO:0019538;protein metabolic process;1.22953119076972e-50!GO:0043234;protein complex;1.42515524290176e-50!GO:0031981;nuclear lumen;3.5822718645017e-49!GO:0043228;non-membrane-bound organelle;1.01763489420647e-46!GO:0043232;intracellular non-membrane-bound organelle;1.01763489420647e-46!GO:0010467;gene expression;1.50978553472496e-46!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.77695689827288e-45!GO:0044267;cellular protein metabolic process;8.6372660431166e-45!GO:0044260;cellular macromolecule metabolic process;1.54106156009763e-44!GO:0031090;organelle membrane;4.64482657768884e-44!GO:0033279;ribosomal subunit;4.73437867231195e-44!GO:0044429;mitochondrial part;2.83036330018545e-43!GO:0044249;cellular biosynthetic process;1.46898691607475e-42!GO:0033036;macromolecule localization;5.01119128439641e-42!GO:0009059;macromolecule biosynthetic process;1.94624286598769e-41!GO:0009058;biosynthetic process;7.59093229684518e-41!GO:0015031;protein transport;3.37947472483911e-40!GO:0016071;mRNA metabolic process;3.92954165952414e-40!GO:0006996;organelle organization and biogenesis;3.61069340062961e-39!GO:0008380;RNA splicing;1.0637896714724e-38!GO:0031967;organelle envelope;3.23068368946685e-38!GO:0005829;cytosol;4.64814118672106e-38!GO:0031975;envelope;5.71074924934865e-38!GO:0008104;protein localization;8.99248819140971e-38!GO:0045184;establishment of protein localization;2.71397967493695e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.04520493888651e-36!GO:0046907;intracellular transport;4.18346797704328e-36!GO:0065003;macromolecular complex assembly;2.67179275093625e-35!GO:0006259;DNA metabolic process;1.29709060095956e-34!GO:0006397;mRNA processing;2.1450108095301e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.1315037517921e-32!GO:0022607;cellular component assembly;1.58907982158489e-31!GO:0005654;nucleoplasm;3.47312866288077e-29!GO:0005681;spliceosome;1.12581119612554e-28!GO:0003676;nucleic acid binding;1.59066266668608e-28!GO:0006886;intracellular protein transport;3.57419610521719e-28!GO:0007049;cell cycle;1.63530456489273e-27!GO:0005740;mitochondrial envelope;3.26075846342379e-26!GO:0044445;cytosolic part;3.5240522542255e-25!GO:0000166;nucleotide binding;9.39175723252327e-25!GO:0031966;mitochondrial membrane;9.82842392451862e-25!GO:0019866;organelle inner membrane;2.41141150698725e-24!GO:0051649;establishment of cellular localization;2.39015808250409e-23!GO:0051641;cellular localization;2.98464070971108e-23!GO:0044451;nucleoplasm part;3.75379956199038e-23!GO:0015934;large ribosomal subunit;6.53617665782789e-23!GO:0005743;mitochondrial inner membrane;1.3121934566131e-22!GO:0015935;small ribosomal subunit;3.30096882271933e-22!GO:0005730;nucleolus;7.29034692807956e-22!GO:0022402;cell cycle process;5.62841790968981e-21!GO:0016874;ligase activity;7.76045204143387e-21!GO:0006457;protein folding;1.41200379878815e-20!GO:0022618;protein-RNA complex assembly;3.16476028528728e-20!GO:0006119;oxidative phosphorylation;4.4357742002359e-20!GO:0031980;mitochondrial lumen;4.98427780343432e-20!GO:0005759;mitochondrial matrix;4.98427780343432e-20!GO:0044455;mitochondrial membrane part;8.16474876987967e-20!GO:0016070;RNA metabolic process;1.17190931898382e-19!GO:0005694;chromosome;1.57743121708649e-19!GO:0016462;pyrophosphatase activity;2.0051913984209e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.29465977966096e-19!GO:0006974;response to DNA damage stimulus;3.00423217933458e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;4.2310078995617e-19!GO:0017111;nucleoside-triphosphatase activity;6.12892782028639e-19!GO:0012505;endomembrane system;8.05407896415257e-19!GO:0000278;mitotic cell cycle;2.05615483719658e-18!GO:0044427;chromosomal part;5.54696133444075e-18!GO:0042254;ribosome biogenesis and assembly;1.20549700428481e-17!GO:0048770;pigment granule;1.59044629155811e-17!GO:0042470;melanosome;1.59044629155811e-17!GO:0032553;ribonucleotide binding;2.43333095291967e-17!GO:0032555;purine ribonucleotide binding;2.43333095291967e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;3.32278946282624e-17!GO:0019941;modification-dependent protein catabolic process;4.05505724386684e-17!GO:0043632;modification-dependent macromolecule catabolic process;4.05505724386684e-17!GO:0006511;ubiquitin-dependent protein catabolic process;4.69442873323521e-17!GO:0017076;purine nucleotide binding;5.4102644430021e-17!GO:0006281;DNA repair;6.49017219297735e-17!GO:0005746;mitochondrial respiratory chain;7.65302298440602e-17!GO:0005783;endoplasmic reticulum;7.65830552316191e-17!GO:0006512;ubiquitin cycle;1.09454352982729e-16!GO:0044257;cellular protein catabolic process;1.10943926755952e-16!GO:0044265;cellular macromolecule catabolic process;1.41081267465957e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.46648502453333e-16!GO:0043285;biopolymer catabolic process;1.85947871963929e-16!GO:0008135;translation factor activity, nucleic acid binding;3.23538259338447e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.4963517090378e-16!GO:0008134;transcription factor binding;6.96237093585752e-16!GO:0005761;mitochondrial ribosome;7.90638168134689e-16!GO:0000313;organellar ribosome;7.90638168134689e-16!GO:0006260;DNA replication;1.8452535544082e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.55894597859205e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.8733027688404e-15!GO:0051082;unfolded protein binding;4.56207083231038e-15!GO:0044432;endoplasmic reticulum part;5.51728716055321e-15!GO:0005524;ATP binding;7.60770127031123e-15!GO:0051186;cofactor metabolic process;8.90736578838827e-15!GO:0032559;adenyl ribonucleotide binding;1.33148123338507e-14!GO:0030163;protein catabolic process;2.82835990383356e-14!GO:0009057;macromolecule catabolic process;2.96447961128316e-14!GO:0043412;biopolymer modification;3.47203291975171e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.71358692190151e-14!GO:0003954;NADH dehydrogenase activity;3.71358692190151e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.71358692190151e-14!GO:0030554;adenyl nucleotide binding;4.24714542841042e-14!GO:0022403;cell cycle phase;4.30693892864499e-14!GO:0051276;chromosome organization and biogenesis;5.87755464488681e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;8.21048146193485e-14!GO:0000375;RNA splicing, via transesterification reactions;8.21048146193485e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.21048146193485e-14!GO:0006605;protein targeting;1.35918593197103e-13!GO:0048193;Golgi vesicle transport;1.67538812030692e-13!GO:0000087;M phase of mitotic cell cycle;4.25528417595766e-13!GO:0009719;response to endogenous stimulus;5.60811873910946e-13!GO:0007067;mitosis;6.60265331837845e-13!GO:0005635;nuclear envelope;8.83894851179659e-13!GO:0003743;translation initiation factor activity;8.90124557807519e-13!GO:0006413;translational initiation;1.23226872560253e-12!GO:0006399;tRNA metabolic process;1.79775621108435e-12!GO:0044248;cellular catabolic process;1.93916094294306e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.2687470291458e-12!GO:0042773;ATP synthesis coupled electron transport;2.2687470291458e-12!GO:0006464;protein modification process;3.47134331988736e-12!GO:0030964;NADH dehydrogenase complex (quinone);4.25645802285423e-12!GO:0045271;respiratory chain complex I;4.25645802285423e-12!GO:0005747;mitochondrial respiratory chain complex I;4.25645802285423e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.284854489778e-12!GO:0006732;coenzyme metabolic process;5.36989811464572e-12!GO:0051301;cell division;6.00418081567334e-12!GO:0016604;nuclear body;6.56776516182814e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.32466561365472e-11!GO:0031965;nuclear membrane;1.47671808023094e-11!GO:0006446;regulation of translational initiation;1.62895361740327e-11!GO:0006913;nucleocytoplasmic transport;1.758217128993e-11!GO:0051726;regulation of cell cycle;3.15995633925267e-11!GO:0005794;Golgi apparatus;3.43651429722213e-11!GO:0051169;nuclear transport;3.49275708441727e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.72894278709639e-11!GO:0044453;nuclear membrane part;5.33838224615515e-11!GO:0000074;regulation of progression through cell cycle;5.40822865206943e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;5.40968933729859e-11!GO:0006364;rRNA processing;6.88835366650154e-11!GO:0005789;endoplasmic reticulum membrane;8.04793686022991e-11!GO:0000279;M phase;1.0993736315979e-10!GO:0016192;vesicle-mediated transport;1.12433463710333e-10!GO:0008639;small protein conjugating enzyme activity;1.60854809188879e-10!GO:0016072;rRNA metabolic process;1.82587782876823e-10!GO:0003712;transcription cofactor activity;1.83867416795776e-10!GO:0006323;DNA packaging;1.89284315575547e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.17235887752236e-10!GO:0006461;protein complex assembly;3.41172108837981e-10!GO:0043687;post-translational protein modification;3.52767317277728e-10!GO:0000785;chromatin;3.78030700598213e-10!GO:0004842;ubiquitin-protein ligase activity;4.54188172848128e-10!GO:0016887;ATPase activity;6.81229468543334e-10!GO:0042623;ATPase activity, coupled;8.8859789241879e-10!GO:0050657;nucleic acid transport;9.03278293039529e-10!GO:0051236;establishment of RNA localization;9.03278293039529e-10!GO:0050658;RNA transport;9.03278293039529e-10!GO:0019787;small conjugating protein ligase activity;9.21080708976138e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.13814793443374e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.13814793443374e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.13814793443374e-09!GO:0005793;ER-Golgi intermediate compartment;1.1669665277267e-09!GO:0006403;RNA localization;1.20668023679472e-09!GO:0065002;intracellular protein transport across a membrane;1.53803665180225e-09!GO:0005643;nuclear pore;1.61004252182338e-09!GO:0009055;electron carrier activity;1.64818238832621e-09!GO:0004386;helicase activity;1.84053545548699e-09!GO:0006366;transcription from RNA polymerase II promoter;2.01351443287994e-09!GO:0065004;protein-DNA complex assembly;2.01351443287994e-09!GO:0009060;aerobic respiration;2.1463390918236e-09!GO:0012501;programmed cell death;2.27890596081128e-09!GO:0043038;amino acid activation;3.06023674275857e-09!GO:0006418;tRNA aminoacylation for protein translation;3.06023674275857e-09!GO:0043039;tRNA aminoacylation;3.06023674275857e-09!GO:0006163;purine nucleotide metabolic process;3.12135991152903e-09!GO:0016607;nuclear speck;3.16820683657199e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.47939477120623e-09!GO:0006915;apoptosis;4.43642421850064e-09!GO:0009259;ribonucleotide metabolic process;6.36942285319887e-09!GO:0016881;acid-amino acid ligase activity;6.51801889551972e-09!GO:0008026;ATP-dependent helicase activity;6.67104062132146e-09!GO:0050794;regulation of cellular process;7.16610076841234e-09!GO:0048523;negative regulation of cellular process;7.43295375094712e-09!GO:0006164;purine nucleotide biosynthetic process;1.03314076646447e-08!GO:0007005;mitochondrion organization and biogenesis;1.10722785133307e-08!GO:0006333;chromatin assembly or disassembly;1.69364242717209e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.80080300741032e-08!GO:0009150;purine ribonucleotide metabolic process;2.08293397263136e-08!GO:0008219;cell death;2.72651462615572e-08!GO:0016265;death;2.72651462615572e-08!GO:0045333;cellular respiration;2.73807446486185e-08!GO:0003697;single-stranded DNA binding;4.32034251994084e-08!GO:0009260;ribonucleotide biosynthetic process;4.98404720295718e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.90110093783216e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.24256041717705e-08!GO:0051028;mRNA transport;7.55448651515284e-08!GO:0051188;cofactor biosynthetic process;8.30755124596291e-08!GO:0017038;protein import;8.40834299810355e-08!GO:0015630;microtubule cytoskeleton;9.57764902452875e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.01955197940419e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.03011331213844e-07!GO:0046930;pore complex;1.15192596001984e-07!GO:0043566;structure-specific DNA binding;1.22382248926726e-07!GO:0005667;transcription factor complex;1.22651241786985e-07!GO:0009141;nucleoside triphosphate metabolic process;1.32498956376317e-07!GO:0051246;regulation of protein metabolic process;1.77999970567639e-07!GO:0048519;negative regulation of biological process;1.93424940449126e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.97914893475156e-07!GO:0016779;nucleotidyltransferase activity;2.115002449232e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.115002449232e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.115002449232e-07!GO:0009056;catabolic process;2.49229858868114e-07!GO:0030120;vesicle coat;2.61339747740656e-07!GO:0030662;coated vesicle membrane;2.61339747740656e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.67597296510246e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.8335397442324e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.8335397442324e-07!GO:0008565;protein transporter activity;2.83645279078033e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.29289362745027e-07!GO:0015986;ATP synthesis coupled proton transport;3.59349391561039e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.59349391561039e-07!GO:0006334;nucleosome assembly;3.59349391561039e-07!GO:0000775;chromosome, pericentric region;4.04788238367826e-07!GO:0006099;tricarboxylic acid cycle;5.11375231977133e-07!GO:0046356;acetyl-CoA catabolic process;5.11375231977133e-07!GO:0003924;GTPase activity;5.26132357936392e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.09413761803987e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.09413761803987e-07!GO:0032446;protein modification by small protein conjugation;6.42548442705744e-07!GO:0006261;DNA-dependent DNA replication;7.59647466681499e-07!GO:0016567;protein ubiquitination;9.08326981029646e-07!GO:0016564;transcription repressor activity;9.96714547032139e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.12767665872081e-06!GO:0005768;endosome;1.189580031863e-06!GO:0000245;spliceosome assembly;1.33760431634734e-06!GO:0006084;acetyl-CoA metabolic process;1.41941125917976e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.50428549469735e-06!GO:0003714;transcription corepressor activity;1.73658892724721e-06!GO:0031497;chromatin assembly;1.81404961813574e-06!GO:0046034;ATP metabolic process;2.06733013125967e-06!GO:0004298;threonine endopeptidase activity;2.07732657002983e-06!GO:0048475;coated membrane;2.27919415938442e-06!GO:0030117;membrane coat;2.27919415938442e-06!GO:0009109;coenzyme catabolic process;2.8855756702045e-06!GO:0045259;proton-transporting ATP synthase complex;3.37394156596721e-06!GO:0009108;coenzyme biosynthetic process;3.38511938075345e-06!GO:0016568;chromatin modification;3.89531717071121e-06!GO:0019829;cation-transporting ATPase activity;4.2293326961914e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.42084128046978e-06!GO:0007010;cytoskeleton organization and biogenesis;4.83330407192465e-06!GO:0051789;response to protein stimulus;4.86064957322392e-06!GO:0006986;response to unfolded protein;4.86064957322392e-06!GO:0009117;nucleotide metabolic process;5.10495705702268e-06!GO:0043623;cellular protein complex assembly;5.22663909905835e-06!GO:0006754;ATP biosynthetic process;5.38865080734475e-06!GO:0006753;nucleoside phosphate metabolic process;5.38865080734475e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.38891025554353e-06!GO:0005788;endoplasmic reticulum lumen;6.1884599521004e-06!GO:0043067;regulation of programmed cell death;6.38563377921159e-06!GO:0050789;regulation of biological process;6.85354622294396e-06!GO:0003899;DNA-directed RNA polymerase activity;6.98993081279475e-06!GO:0031324;negative regulation of cellular metabolic process;7.31355356450692e-06!GO:0006613;cotranslational protein targeting to membrane;7.68927406182514e-06!GO:0042981;regulation of apoptosis;8.09785994249329e-06!GO:0005819;spindle;8.1377739479858e-06!GO:0005762;mitochondrial large ribosomal subunit;8.40646078243551e-06!GO:0000315;organellar large ribosomal subunit;8.40646078243551e-06!GO:0005657;replication fork;8.69048453878348e-06!GO:0051168;nuclear export;9.07486829437449e-06!GO:0000151;ubiquitin ligase complex;9.30721101531896e-06!GO:0051325;interphase;1.05184791890528e-05!GO:0016740;transferase activity;1.13649445651648e-05!GO:0051187;cofactor catabolic process;1.53993282365007e-05!GO:0005798;Golgi-associated vesicle;1.55867863462749e-05!GO:0007051;spindle organization and biogenesis;1.56633666719569e-05!GO:0006916;anti-apoptosis;1.85271338184335e-05!GO:0051329;interphase of mitotic cell cycle;1.90523436841032e-05!GO:0006752;group transfer coenzyme metabolic process;1.93834837659188e-05!GO:0031252;leading edge;1.96760530097412e-05!GO:0043069;negative regulation of programmed cell death;1.99656025520993e-05!GO:0031988;membrane-bound vesicle;2.0175862924324e-05!GO:0016853;isomerase activity;2.13507747258098e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.13507747258098e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.23622056652387e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.32885555129213e-05!GO:0042802;identical protein binding;2.61260743982268e-05!GO:0009892;negative regulation of metabolic process;2.62519438543933e-05!GO:0019843;rRNA binding;3.04699445078591e-05!GO:0000314;organellar small ribosomal subunit;3.04699445078591e-05!GO:0005763;mitochondrial small ribosomal subunit;3.04699445078591e-05!GO:0005813;centrosome;3.15933165921136e-05!GO:0005525;GTP binding;3.22087976405396e-05!GO:0016563;transcription activator activity;3.55146338994333e-05!GO:0043681;protein import into mitochondrion;4.31382049189639e-05!GO:0043066;negative regulation of apoptosis;4.37894548630506e-05!GO:0006793;phosphorus metabolic process;4.40744858686381e-05!GO:0006796;phosphate metabolic process;4.40744858686381e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.47272068916214e-05!GO:0051170;nuclear import;4.48075861011471e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.25786281862839e-05!GO:0005815;microtubule organizing center;5.43057635498956e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.43517497044686e-05!GO:0044431;Golgi apparatus part;6.79777867563637e-05!GO:0003724;RNA helicase activity;7.9064478942015e-05!GO:0043021;ribonucleoprotein binding;8.03654093847723e-05!GO:0006606;protein import into nucleus;8.1175148014462e-05!GO:0030867;rough endoplasmic reticulum membrane;8.71182326744229e-05!GO:0045786;negative regulation of progression through cell cycle;9.06670937137855e-05!GO:0019222;regulation of metabolic process;9.85263582484814e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000100122612891642!GO:0008033;tRNA processing;0.000108027513511871!GO:0003690;double-stranded DNA binding;0.000122488954660928!GO:0019899;enzyme binding;0.000122576968219021!GO:0000075;cell cycle checkpoint;0.000128869457316907!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000129697274412719!GO:0003684;damaged DNA binding;0.0001379789369411!GO:0045454;cell redox homeostasis;0.000138778288590037!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000146563888610494!GO:0003729;mRNA binding;0.000155240843148997!GO:0016310;phosphorylation;0.000161376464231652!GO:0005770;late endosome;0.000162456568336683!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000171939709582762!GO:0030029;actin filament-based process;0.000179149182518904!GO:0008094;DNA-dependent ATPase activity;0.0002036279435634!GO:0016481;negative regulation of transcription;0.000221295238889109!GO:0016363;nuclear matrix;0.000221465992777713!GO:0051252;regulation of RNA metabolic process;0.000223158712224175!GO:0006626;protein targeting to mitochondrion;0.000223955144954201!GO:0008654;phospholipid biosynthetic process;0.000224247909929992!GO:0016859;cis-trans isomerase activity;0.000225557440301495!GO:0003713;transcription coactivator activity;0.000226177608257524!GO:0031982;vesicle;0.000242277566663402!GO:0000786;nucleosome;0.000242313203899939!GO:0016787;hydrolase activity;0.000245046323857106!GO:0032561;guanyl ribonucleotide binding;0.000259115660727493!GO:0019001;guanyl nucleotide binding;0.000259115660727493!GO:0006839;mitochondrial transport;0.000269136680424864!GO:0005769;early endosome;0.000284485971856378!GO:0051052;regulation of DNA metabolic process;0.000302630363160006!GO:0044440;endosomal part;0.000320855270880366!GO:0010008;endosome membrane;0.000320855270880366!GO:0031410;cytoplasmic vesicle;0.000348531636896337!GO:0000776;kinetochore;0.000351105016266645!GO:0008361;regulation of cell size;0.000359218969156528!GO:0051427;hormone receptor binding;0.000359506623551058!GO:0008250;oligosaccharyl transferase complex;0.000409284454690429!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000412130557829796!GO:0004576;oligosaccharyl transferase activity;0.000414937005086165!GO:0016491;oxidoreductase activity;0.000439032169008308!GO:0033116;ER-Golgi intermediate compartment membrane;0.000466634429242686!GO:0006302;double-strand break repair;0.000491687437193242!GO:0006405;RNA export from nucleus;0.000496934079298062!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000501140495741093!GO:0006383;transcription from RNA polymerase III promoter;0.000501338521005714!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000506587064138398!GO:0006612;protein targeting to membrane;0.000537746320891181!GO:0007006;mitochondrial membrane organization and biogenesis;0.000584134986908043!GO:0006402;mRNA catabolic process;0.000628715494423563!GO:0044452;nucleolar part;0.000639336293195018!GO:0016049;cell growth;0.000663271174171141!GO:0035257;nuclear hormone receptor binding;0.0006753917180761!GO:0015980;energy derivation by oxidation of organic compounds;0.000710588442547958!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000735418289120651!GO:0043488;regulation of mRNA stability;0.000827448995549449!GO:0043487;regulation of RNA stability;0.000827448995549449!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000832919052028109!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000844065405358833!GO:0000049;tRNA binding;0.000868631588663149!GO:0048471;perinuclear region of cytoplasm;0.000873073483634314!GO:0004527;exonuclease activity;0.000926927372971486!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000985465182055418!GO:0005791;rough endoplasmic reticulum;0.00103522164207647!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00104632429842031!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00104632429842031!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00104632429842031!GO:0005905;coated pit;0.00105435414383372!GO:0008092;cytoskeletal protein binding;0.00112926482162335!GO:0031968;organelle outer membrane;0.00118214190801319!GO:0030663;COPI coated vesicle membrane;0.00130865267469823!GO:0030126;COPI vesicle coat;0.00130865267469823!GO:0001726;ruffle;0.00131866485365777!GO:0005048;signal sequence binding;0.00142074018293796!GO:0005885;Arp2/3 protein complex;0.00143674892064262!GO:0009165;nucleotide biosynthetic process;0.00143759391312452!GO:0019867;outer membrane;0.00143798313738304!GO:0006310;DNA recombination;0.00148110409965573!GO:0008186;RNA-dependent ATPase activity;0.00152505003811929!GO:0001558;regulation of cell growth;0.00153626270453036!GO:0051920;peroxiredoxin activity;0.00157877476154633!GO:0005773;vacuole;0.0015900538967756!GO:0000139;Golgi membrane;0.00168046214246917!GO:0032508;DNA duplex unwinding;0.00168819393547145!GO:0032392;DNA geometric change;0.00168819393547145!GO:0018196;peptidyl-asparagine modification;0.00172027398299627!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00172027398299627!GO:0031072;heat shock protein binding;0.00172027398299627!GO:0005874;microtubule;0.00172142253151268!GO:0030880;RNA polymerase complex;0.00182946414148195!GO:0008312;7S RNA binding;0.00187719030962546!GO:0005741;mitochondrial outer membrane;0.00189259982159893!GO:0006414;translational elongation;0.00196787757106073!GO:0048500;signal recognition particle;0.00200363027530202!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00206608056890055!GO:0008168;methyltransferase activity;0.00217845958507584!GO:0046474;glycerophospholipid biosynthetic process;0.00224295868389937!GO:0008243;plasminogen activator activity;0.00226586382823032!GO:0003746;translation elongation factor activity;0.00226887809190007!GO:0030137;COPI-coated vesicle;0.00228273309166798!GO:0006401;RNA catabolic process;0.00240903687421977!GO:0016272;prefoldin complex;0.0024281537699839!GO:0003682;chromatin binding;0.00243957106728821!GO:0005684;U2-dependent spliceosome;0.00243957106728821!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00250559831124257!GO:0007088;regulation of mitosis;0.00264485242240408!GO:0048522;positive regulation of cellular process;0.00264485242240408!GO:0006352;transcription initiation;0.00264485242240408!GO:0016741;transferase activity, transferring one-carbon groups;0.00264525331855336!GO:0016197;endosome transport;0.00267536775969615!GO:0006091;generation of precursor metabolites and energy;0.00270847992677407!GO:0003678;DNA helicase activity;0.00270847992677407!GO:0030176;integral to endoplasmic reticulum membrane;0.00271169222475656!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0027157246107315!GO:0046489;phosphoinositide biosynthetic process;0.00281522002916592!GO:0006268;DNA unwinding during replication;0.00281884472921807!GO:0007059;chromosome segregation;0.00298535608949642!GO:0006595;polyamine metabolic process;0.00306563192536124!GO:0000082;G1/S transition of mitotic cell cycle;0.00323112951417294!GO:0007052;mitotic spindle organization and biogenesis;0.003231338116121!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00342464889680947!GO:0000428;DNA-directed RNA polymerase complex;0.00342464889680947!GO:0006497;protein amino acid lipidation;0.00345883661064206!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00359267335156398!GO:0045047;protein targeting to ER;0.00359267335156398!GO:0030658;transport vesicle membrane;0.00365867968211122!GO:0000323;lytic vacuole;0.00373441074436818!GO:0005764;lysosome;0.00373441074436818!GO:0030133;transport vesicle;0.00376366270342584!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00394441039324389!GO:0015002;heme-copper terminal oxidase activity;0.00394441039324389!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00394441039324389!GO:0004129;cytochrome-c oxidase activity;0.00394441039324389!GO:0004004;ATP-dependent RNA helicase activity;0.00395346238271141!GO:0043022;ribosome binding;0.00414971209775164!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00423225651427073!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00423225651427073!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0045795659578332!GO:0016251;general RNA polymerase II transcription factor activity;0.00476108506294579!GO:0030134;ER to Golgi transport vesicle;0.00502375059471783!GO:0030433;ER-associated protein catabolic process;0.00504324914485234!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00504324914485234!GO:0030132;clathrin coat of coated pit;0.00520465643776792!GO:0046483;heterocycle metabolic process;0.00521795733189683!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00539973763345959!GO:0009112;nucleobase metabolic process;0.00570927088204779!GO:0032200;telomere organization and biogenesis;0.00580624994250483!GO:0000723;telomere maintenance;0.00580624994250483!GO:0006891;intra-Golgi vesicle-mediated transport;0.00588658983982735!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0059392701810875!GO:0043596;nuclear replication fork;0.00613566594373931!GO:0006984;ER-nuclear signaling pathway;0.00626900252762803!GO:0003711;transcription elongation regulator activity;0.00626900252762803!GO:0031323;regulation of cellular metabolic process;0.00636958884409644!GO:0008408;3'-5' exonuclease activity;0.00645013559343368!GO:0043624;cellular protein complex disassembly;0.0065598642151085!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00656365417902308!GO:0008022;protein C-terminus binding;0.00657165976190541!GO:0000059;protein import into nucleus, docking;0.0065993955663637!GO:0046983;protein dimerization activity;0.00671775609368176!GO:0006509;membrane protein ectodomain proteolysis;0.0067518679130813!GO:0033619;membrane protein proteolysis;0.0067518679130813!GO:0017166;vinculin binding;0.00707510816934119!GO:0006284;base-excision repair;0.00725482747032034!GO:0030127;COPII vesicle coat;0.00725482747032034!GO:0012507;ER to Golgi transport vesicle membrane;0.00725482747032034!GO:0051540;metal cluster binding;0.00731472879180909!GO:0051536;iron-sulfur cluster binding;0.00731472879180909!GO:0031124;mRNA 3'-end processing;0.00755276228952179!GO:0030041;actin filament polymerization;0.00758742637839133!GO:0006144;purine base metabolic process;0.00776303137808741!GO:0065007;biological regulation;0.00784453341452919!GO:0008047;enzyme activator activity;0.00791743754579321!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0079280044780975!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00796271843782868!GO:0030659;cytoplasmic vesicle membrane;0.00808760885622703!GO:0006376;mRNA splice site selection;0.00823735443383239!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00823735443383239!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0082814516701274!GO:0051087;chaperone binding;0.00836779153646648!GO:0009116;nucleoside metabolic process;0.00871985218075478!GO:0008139;nuclear localization sequence binding;0.00872419863445629!GO:0051287;NAD binding;0.0088171063828302!GO:0030660;Golgi-associated vesicle membrane;0.00884018555136212!GO:0000339;RNA cap binding;0.00899806394595947!GO:0048487;beta-tubulin binding;0.00905064376305335!GO:0007093;mitotic cell cycle checkpoint;0.00918077970496231!GO:0040008;regulation of growth;0.00923424437784068!GO:0030384;phosphoinositide metabolic process;0.00939784516442794!GO:0016044;membrane organization and biogenesis;0.00959096596097769!GO:0000178;exosome (RNase complex);0.00964950129499454!GO:0006892;post-Golgi vesicle-mediated transport;0.0096613393103696!GO:0006520;amino acid metabolic process;0.00989522162968143!GO:0004518;nuclease activity;0.0105175629318725!GO:0005876;spindle microtubule;0.0105175629318725!GO:0005096;GTPase activator activity;0.01055372929573!GO:0046467;membrane lipid biosynthetic process;0.010633971856531!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0106817069188643!GO:0006611;protein export from nucleus;0.0107211606765383!GO:0005637;nuclear inner membrane;0.0110010547206677!GO:0004674;protein serine/threonine kinase activity;0.0110576032435965!GO:0051128;regulation of cellular component organization and biogenesis;0.0111387171063568!GO:0051539;4 iron, 4 sulfur cluster binding;0.0111500395623317!GO:0042158;lipoprotein biosynthetic process;0.0118643517665161!GO:0043284;biopolymer biosynthetic process;0.0119095218617017!GO:0006289;nucleotide-excision repair;0.0121638990051427!GO:0005832;chaperonin-containing T-complex;0.0121892638399604!GO:0007017;microtubule-based process;0.012268798366217!GO:0006350;transcription;0.012268798366217!GO:0006220;pyrimidine nucleotide metabolic process;0.0125363989160706!GO:0008180;signalosome;0.0126107862487542!GO:0044433;cytoplasmic vesicle part;0.0127303829246205!GO:0000096;sulfur amino acid metabolic process;0.0128323930860429!GO:0032259;methylation;0.0128475394878778!GO:0006275;regulation of DNA replication;0.0130299272491471!GO:0045941;positive regulation of transcription;0.0130887197006042!GO:0006506;GPI anchor biosynthetic process;0.0132067705688706!GO:0006650;glycerophospholipid metabolic process;0.0133377218330898!GO:0006270;DNA replication initiation;0.0136549762036216!GO:0030032;lamellipodium biogenesis;0.0136608055314367!GO:0030027;lamellipodium;0.0141800878142713!GO:0043065;positive regulation of apoptosis;0.014663993439075!GO:0016584;nucleosome positioning;0.014665893096018!GO:0032984;macromolecular complex disassembly;0.0146889743898493!GO:0044262;cellular carbohydrate metabolic process;0.0147156056587007!GO:0016126;sterol biosynthetic process;0.0147688324991273!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0149825535916077!GO:0045039;protein import into mitochondrial inner membrane;0.0149825535916077!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0153004005004364!GO:0043601;nuclear replisome;0.0153560654823364!GO:0030894;replisome;0.0153560654823364!GO:0009081;branched chain family amino acid metabolic process;0.0153620083110187!GO:0012506;vesicle membrane;0.0154804194687058!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0160445618580302!GO:0031901;early endosome membrane;0.0161442294542786!GO:0015631;tubulin binding;0.0164581864974212!GO:0008632;apoptotic program;0.0164581864974212!GO:0043414;biopolymer methylation;0.0165274532542882!GO:0008637;apoptotic mitochondrial changes;0.0166059571336213!GO:0045893;positive regulation of transcription, DNA-dependent;0.0167765441771336!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0169905614796668!GO:0043068;positive regulation of programmed cell death;0.0170247601426946!GO:0022415;viral reproductive process;0.0174298774756407!GO:0030118;clathrin coat;0.017466430999692!GO:0000781;chromosome, telomeric region;0.0176225489230816!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0179255855800856!GO:0009451;RNA modification;0.0181523706645512!GO:0006950;response to stress;0.0184046490812438!GO:0035258;steroid hormone receptor binding;0.0185116063091965!GO:0007243;protein kinase cascade;0.0185116063091965!GO:0019752;carboxylic acid metabolic process;0.0186888390509689!GO:0006505;GPI anchor metabolic process;0.0192377279937504!GO:0043241;protein complex disassembly;0.0194623806844797!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0195819703272462!GO:0006354;RNA elongation;0.0208873799618558!GO:0007050;cell cycle arrest;0.0210157597830178!GO:0045045;secretory pathway;0.0220744516456718!GO:0006082;organic acid metabolic process;0.0221850967113325!GO:0065009;regulation of a molecular function;0.0221850967113325!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0223839441527913!GO:0015399;primary active transmembrane transporter activity;0.0223839441527913!GO:0003702;RNA polymerase II transcription factor activity;0.0224838520310981!GO:0005869;dynactin complex;0.0227627563435808!GO:0006378;mRNA polyadenylation;0.0229295812714128!GO:0004532;exoribonuclease activity;0.023589564129596!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.023589564129596!GO:0031529;ruffle organization and biogenesis;0.0238001452427471!GO:0015992;proton transport;0.0239231331222253!GO:0006818;hydrogen transport;0.0241012090209796!GO:0004003;ATP-dependent DNA helicase activity;0.0242419432077388!GO:0042393;histone binding;0.0242419432077388!GO:0030521;androgen receptor signaling pathway;0.0242629420300565!GO:0008097;5S rRNA binding;0.0244286375856164!GO:0005758;mitochondrial intermembrane space;0.0250327058626459!GO:0043189;H4/H2A histone acetyltransferase complex;0.0254751575469478!GO:0030833;regulation of actin filament polymerization;0.025863875249966!GO:0031123;RNA 3'-end processing;0.0264308537234416!GO:0006406;mRNA export from nucleus;0.0265008664847276!GO:0045892;negative regulation of transcription, DNA-dependent;0.0267336069504603!GO:0006360;transcription from RNA polymerase I promoter;0.0270911761739094!GO:0022890;inorganic cation transmembrane transporter activity;0.0277085574269898!GO:0019206;nucleoside kinase activity;0.0278740079999363!GO:0030031;cell projection biogenesis;0.0279085531940469!GO:0005669;transcription factor TFIID complex;0.0280155706031885!GO:0046128;purine ribonucleoside metabolic process;0.0282663135074315!GO:0042278;purine nucleoside metabolic process;0.0282663135074315!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0283990100065503!GO:0030125;clathrin vesicle coat;0.0287700552512677!GO:0030665;clathrin coated vesicle membrane;0.0287700552512677!GO:0008652;amino acid biosynthetic process;0.0288031970232229!GO:0007264;small GTPase mediated signal transduction;0.0288907720455126!GO:0001836;release of cytochrome c from mitochondria;0.0290920925153321!GO:0006417;regulation of translation;0.0293440074688136!GO:0005811;lipid particle;0.0296448548771703!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0296772205119718!GO:0010257;NADH dehydrogenase complex assembly;0.0296772205119718!GO:0033108;mitochondrial respiratory chain complex assembly;0.0296772205119718!GO:0005850;eukaryotic translation initiation factor 2 complex;0.03037827396452!GO:0005938;cell cortex;0.03037827396452!GO:0050662;coenzyme binding;0.0308928127820708!GO:0005856;cytoskeleton;0.0309357625011129!GO:0006695;cholesterol biosynthetic process;0.0310989527313322!GO:0007040;lysosome organization and biogenesis;0.0323773263125707!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0325166904071729!GO:0046966;thyroid hormone receptor binding;0.0327827799030574!GO:0031371;ubiquitin conjugating enzyme complex;0.0338694253071767!GO:0031970;organelle envelope lumen;0.03397152487471!GO:0017134;fibroblast growth factor binding;0.0349705571302979!GO:0022411;cellular component disassembly;0.0353114532344359!GO:0000792;heterochromatin;0.035600759836148!GO:0006979;response to oxidative stress;0.0358880740754454!GO:0035267;NuA4 histone acetyltransferase complex;0.0364625846663753!GO:0007034;vacuolar transport;0.0365568965219799!GO:0042770;DNA damage response, signal transduction;0.0367881898879547!GO:0007004;telomere maintenance via telomerase;0.0371252325196219!GO:0031570;DNA integrity checkpoint;0.0371252325196219!GO:0005784;translocon complex;0.0375444822334332!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0380768647703663!GO:0006740;NADPH regeneration;0.0389091038213141!GO:0006098;pentose-phosphate shunt;0.0389091038213141!GO:0032906;transforming growth factor-beta2 production;0.0400107567171959!GO:0032909;regulation of transforming growth factor-beta2 production;0.0400107567171959!GO:0031625;ubiquitin protein ligase binding;0.0405873247686834!GO:0000118;histone deacetylase complex;0.0405873247686834!GO:0008538;proteasome activator activity;0.0411688373736486!GO:0010468;regulation of gene expression;0.0412617318290118!GO:0006779;porphyrin biosynthetic process;0.0412790852268342!GO:0033014;tetrapyrrole biosynthetic process;0.0412790852268342!GO:0046112;nucleobase biosynthetic process;0.0417705474613859!GO:0006596;polyamine biosynthetic process;0.0421443153715726!GO:0030911;TPR domain binding;0.0431115843038932!GO:0030968;unfolded protein response;0.0434998595569318!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0437864797774249!GO:0045947;negative regulation of translational initiation;0.043970539224618!GO:0004659;prenyltransferase activity;0.043970539224618!GO:0009083;branched chain family amino acid catabolic process;0.0445612748855398!GO:0006541;glutamine metabolic process;0.0445736460784494!GO:0043154;negative regulation of caspase activity;0.0445918838254855!GO:0007033;vacuole organization and biogenesis;0.0459628444695783!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0465500347461206!GO:0006400;tRNA modification;0.0467327601741558!GO:0033673;negative regulation of kinase activity;0.0467906069531856!GO:0006469;negative regulation of protein kinase activity;0.0467906069531856!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0468094991404597!GO:0030508;thiol-disulfide exchange intermediate activity;0.0469678650317817!GO:0009303;rRNA transcription;0.047041598272972!GO:0006672;ceramide metabolic process;0.0479032844295488!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0489053238318174!GO:0005100;Rho GTPase activator activity;0.0496523311586377 | |||
|sample_id=10783 | |sample_id=10783 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=thyroid | |sample_tissue=thyroid | ||
|top_motifs=NKX2-1,4:1.82611185439;ELK1,4_GABP{A,B1}:1.76532009911;TFDP1:1.45391933772;VSX1,2:1.19511573407;bHLH_family:1.13942418123;NKX3-1:1.13647567163;PAX6:1.09989403717;HBP1_HMGB_SSRP1_UBTF:0.960110376032;STAT1,3:0.904579553332;E2F1..5:0.904182588166;HIF1A:0.887450846179;ZNF143:0.843159384389;GFI1:0.832190964169;POU2F1..3:0.815848295114;NFY{A,B,C}:0.755175300602;ARID5B:0.696581751942;PITX1..3:0.604551626176;PPARG:0.598676310683;CDC5L:0.566367706569;POU1F1:0.560234802786;TEAD1:0.548218462788;FOXL1:0.544105809887;PAX5:0.513591959463;HIC1:0.481186270111;TLX1..3_NFIC{dimer}:0.471161821645;GCM1,2:0.458356860403;NRF1:0.449874101966;MTE{core}:0.443181676709;HOX{A4,D4}:0.428047297054;POU5F1:0.42468238825;FOXP1:0.419175960325;FOX{I1,J2}:0.416630923223;ZNF384:0.390348946393;YY1:0.367170963787;ELF1,2,4:0.357117638439;MYOD1:0.312527406868;AIRE:0.301001284214;TFAP2B:0.281218067218;NKX3-2:0.273605240349;AHR_ARNT_ARNT2:0.263195313472;NKX6-1,2:0.258720692691;RFX1:0.251204074194;EVI1:0.24553118808;TFAP2{A,C}:0.225591844914;GFI1B:0.218859937163;MYBL2:0.197335090136;FOX{D1,D2}:0.17812419836;POU3F1..4:0.1780310451;ONECUT1,2:0.173195541809;CDX1,2,4:0.169476698113;HMGA1,2:0.167584882822;ZNF148:0.166841966574;BREu{core}:0.155785736158;ZFP161:0.146483626606;XCPE1{core}:0.134142937778;PAX3,7:0.131742375801;EP300:0.129993944323;ZBTB16:0.128080052551;UFEwm:0.1264357631;HOXA9_MEIS1:0.125217693433;BACH2:0.124712193314;XBP1:0.122382169125;TP53:0.117093015048;FOXQ1:0.11705470723;PAX2:0.0885742042837;GLI1..3:0.0683952502997;FOS_FOS{B,L1}_JUN{B,D}:0.0648282432113;ZIC1..3:0.0636552764976;HOX{A5,B5}:0.0635775318946;SRF:0.060046253032;MTF1:0.0570665691456;MYB:0.0395504874072;ZBTB6:0.0357568480709;ADNP_IRX_SIX_ZHX:0.0252913894027;GTF2A1,2:0.0199170129195;LHX3,4:0.00660092427648;MAZ:-0.00329020400025;MEF2{A,B,C,D}:-0.00443330040647;SP1:-0.0180469628468;EGR1..3:-0.0430722216;FOXM1:-0.0482017580984;TEF:-0.0490913796561;NR6A1:-0.0631278068789;PRDM1:-0.0682158518929;TOPORS:-0.0710155489647;LEF1_TCF7_TCF7L1,2:-0.0728051591499;GATA4:-0.0776474976405;MED-1{core}:-0.0844755584202;FOSL2:-0.0907938564837;TBP:-0.0965660361623;EN1,2:-0.115544924769;GZF1:-0.117681169032;ATF4:-0.119187870223;NFE2:-0.127426076272;FOXA2:-0.131071523578;ATF5_CREB3:-0.158583437809;REST:-0.163337251835;POU6F1:-0.167459276701;PAX4:-0.192772526295;FOXO1,3,4:-0.208310178347;HLF:-0.225988993233;STAT2,4,6:-0.232722681809;NR3C1:-0.245619710147;STAT5{A,B}:-0.250910609959;MZF1:-0.252049600693;PAX1,9:-0.254181551429;SNAI1..3:-0.256043916216;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.258309113965;CEBPA,B_DDIT3:-0.267575923159;LMO2:-0.274985039543;KLF4:-0.281547106973;PDX1:-0.288950176611;SOX{8,9,10}:-0.292843034914;CREB1:-0.295227455055;NFATC1..3:-0.29654907284;IKZF2:-0.297756410035;RXRA_VDR{dimer}:-0.301767770732;IRF1,2:-0.301820391323;FOXD3:-0.310793923238;IKZF1:-0.311996984233;NFIL3:-0.315440665302;RXR{A,B,G}:-0.319483524036;TBX4,5:-0.326290208878;BPTF:-0.326731532595;NKX2-3_NKX2-5:-0.333612774307;DBP:-0.337481192859;PATZ1:-0.35123417806;SPI1:-0.357481314244;RREB1:-0.368589070516;ZEB1:-0.379497540119;HNF1A:-0.388954034846;GTF2I:-0.389696962545;RBPJ:-0.392886125439;HES1:-0.417026175796;IRF7:-0.421187740196;OCT4_SOX2{dimer}:-0.427779796983;ETS1,2:-0.428499350622;TFCP2:-0.429238313123;TFAP4:-0.432599547335;FOXN1:-0.435152321071;GATA6:-0.435748200433;NHLH1,2:-0.440125440531;AR:-0.443441110612;NFKB1_REL_RELA:-0.44538218093;SPIB:-0.449135681922;HNF4A_NR2F1,2:-0.451744125521;HOX{A6,A7,B6,B7}:-0.45248657193;RUNX1..3:-0.460846736117;SPZ1:-0.474806286253;SOX5:-0.477768869925;NANOG:-0.478878422586;NFIX:-0.502628100564;NKX2-2,8:-0.536916851022;SOX17:-0.543642736877;CUX2:-0.544151630145;MYFfamily:-0.564395677361;PRRX1,2:-0.567520648351;SREBF1,2:-0.572749600456;RFX2..5_RFXANK_RFXAP:-0.600227812154;HMX1:-0.610369999887;ALX4:-0.613540490412;ALX1:-0.621982707317;JUN:-0.686078244517;PAX8:-0.689675497609;DMAP1_NCOR{1,2}_SMARC:-0.717103452379;SOX2:-0.732849547387;TAL1_TCF{3,4,12}:-0.743048249909;NFE2L2:-0.745432173556;ATF2:-0.748665212278;CRX:-0.779120926339;TLX2:-0.786604578591;ATF6:-0.828816528207;T:-0.849311819389;ZNF423:-0.857332358926;EBF1:-0.875579790951;NR5A1,2:-0.879160077628;SMAD1..7,9:-0.889393876609;PBX1:-0.889539812478;NFE2L1:-0.955115363849;HSF1,2:-0.959299441157;FOXP3:-0.989729268671;MAFB:-1.02219421877;NR1H4:-1.02455358577;ZNF238:-1.03017405272;HAND1,2:-1.04652202993;ESRRA:-1.07026956115;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.09206098855;RORA:-1.24462324366;ESR1:-1.33855361898;NANOG{mouse}:-1.3979898548;TGIF1:-1.41341819801;FOX{F1,F2,J1}:-1.45571060634 | |top_motifs=NKX2-1,4:1.82611185439;ELK1,4_GABP{A,B1}:1.76532009911;TFDP1:1.45391933772;VSX1,2:1.19511573407;bHLH_family:1.13942418123;NKX3-1:1.13647567163;PAX6:1.09989403717;HBP1_HMGB_SSRP1_UBTF:0.960110376032;STAT1,3:0.904579553332;E2F1..5:0.904182588166;HIF1A:0.887450846179;ZNF143:0.843159384389;GFI1:0.832190964169;POU2F1..3:0.815848295114;NFY{A,B,C}:0.755175300602;ARID5B:0.696581751942;PITX1..3:0.604551626176;PPARG:0.598676310683;CDC5L:0.566367706569;POU1F1:0.560234802786;TEAD1:0.548218462788;FOXL1:0.544105809887;PAX5:0.513591959463;HIC1:0.481186270111;TLX1..3_NFIC{dimer}:0.471161821645;GCM1,2:0.458356860403;NRF1:0.449874101966;MTE{core}:0.443181676709;HOX{A4,D4}:0.428047297054;POU5F1:0.42468238825;FOXP1:0.419175960325;FOX{I1,J2}:0.416630923223;ZNF384:0.390348946393;YY1:0.367170963787;ELF1,2,4:0.357117638439;MYOD1:0.312527406868;AIRE:0.301001284214;TFAP2B:0.281218067218;NKX3-2:0.273605240349;AHR_ARNT_ARNT2:0.263195313472;NKX6-1,2:0.258720692691;RFX1:0.251204074194;EVI1:0.24553118808;TFAP2{A,C}:0.225591844914;GFI1B:0.218859937163;MYBL2:0.197335090136;FOX{D1,D2}:0.17812419836;POU3F1..4:0.1780310451;ONECUT1,2:0.173195541809;CDX1,2,4:0.169476698113;HMGA1,2:0.167584882822;ZNF148:0.166841966574;BREu{core}:0.155785736158;ZFP161:0.146483626606;XCPE1{core}:0.134142937778;PAX3,7:0.131742375801;EP300:0.129993944323;ZBTB16:0.128080052551;UFEwm:0.1264357631;HOXA9_MEIS1:0.125217693433;BACH2:0.124712193314;XBP1:0.122382169125;TP53:0.117093015048;FOXQ1:0.11705470723;PAX2:0.0885742042837;GLI1..3:0.0683952502997;FOS_FOS{B,L1}_JUN{B,D}:0.0648282432113;ZIC1..3:0.0636552764976;HOX{A5,B5}:0.0635775318946;SRF:0.060046253032;MTF1:0.0570665691456;MYB:0.0395504874072;ZBTB6:0.0357568480709;ADNP_IRX_SIX_ZHX:0.0252913894027;GTF2A1,2:0.0199170129195;LHX3,4:0.00660092427648;MAZ:-0.00329020400025;MEF2{A,B,C,D}:-0.00443330040647;SP1:-0.0180469628468;EGR1..3:-0.0430722216;FOXM1:-0.0482017580984;TEF:-0.0490913796561;NR6A1:-0.0631278068789;PRDM1:-0.0682158518929;TOPORS:-0.0710155489647;LEF1_TCF7_TCF7L1,2:-0.0728051591499;GATA4:-0.0776474976405;MED-1{core}:-0.0844755584202;FOSL2:-0.0907938564837;TBP:-0.0965660361623;EN1,2:-0.115544924769;GZF1:-0.117681169032;ATF4:-0.119187870223;NFE2:-0.127426076272;FOXA2:-0.131071523578;ATF5_CREB3:-0.158583437809;REST:-0.163337251835;POU6F1:-0.167459276701;PAX4:-0.192772526295;FOXO1,3,4:-0.208310178347;HLF:-0.225988993233;STAT2,4,6:-0.232722681809;NR3C1:-0.245619710147;STAT5{A,B}:-0.250910609959;MZF1:-0.252049600693;PAX1,9:-0.254181551429;SNAI1..3:-0.256043916216;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.258309113965;CEBPA,B_DDIT3:-0.267575923159;LMO2:-0.274985039543;KLF4:-0.281547106973;PDX1:-0.288950176611;SOX{8,9,10}:-0.292843034914;CREB1:-0.295227455055;NFATC1..3:-0.29654907284;IKZF2:-0.297756410035;RXRA_VDR{dimer}:-0.301767770732;IRF1,2:-0.301820391323;FOXD3:-0.310793923238;IKZF1:-0.311996984233;NFIL3:-0.315440665302;RXR{A,B,G}:-0.319483524036;TBX4,5:-0.326290208878;BPTF:-0.326731532595;NKX2-3_NKX2-5:-0.333612774307;DBP:-0.337481192859;PATZ1:-0.35123417806;SPI1:-0.357481314244;RREB1:-0.368589070516;ZEB1:-0.379497540119;HNF1A:-0.388954034846;GTF2I:-0.389696962545;RBPJ:-0.392886125439;HES1:-0.417026175796;IRF7:-0.421187740196;OCT4_SOX2{dimer}:-0.427779796983;ETS1,2:-0.428499350622;TFCP2:-0.429238313123;TFAP4:-0.432599547335;FOXN1:-0.435152321071;GATA6:-0.435748200433;NHLH1,2:-0.440125440531;AR:-0.443441110612;NFKB1_REL_RELA:-0.44538218093;SPIB:-0.449135681922;HNF4A_NR2F1,2:-0.451744125521;HOX{A6,A7,B6,B7}:-0.45248657193;RUNX1..3:-0.460846736117;SPZ1:-0.474806286253;SOX5:-0.477768869925;NANOG:-0.478878422586;NFIX:-0.502628100564;NKX2-2,8:-0.536916851022;SOX17:-0.543642736877;CUX2:-0.544151630145;MYFfamily:-0.564395677361;PRRX1,2:-0.567520648351;SREBF1,2:-0.572749600456;RFX2..5_RFXANK_RFXAP:-0.600227812154;HMX1:-0.610369999887;ALX4:-0.613540490412;ALX1:-0.621982707317;JUN:-0.686078244517;PAX8:-0.689675497609;DMAP1_NCOR{1,2}_SMARC:-0.717103452379;SOX2:-0.732849547387;TAL1_TCF{3,4,12}:-0.743048249909;NFE2L2:-0.745432173556;ATF2:-0.748665212278;CRX:-0.779120926339;TLX2:-0.786604578591;ATF6:-0.828816528207;T:-0.849311819389;ZNF423:-0.857332358926;EBF1:-0.875579790951;NR5A1,2:-0.879160077628;SMAD1..7,9:-0.889393876609;PBX1:-0.889539812478;NFE2L1:-0.955115363849;HSF1,2:-0.959299441157;FOXP3:-0.989729268671;MAFB:-1.02219421877;NR1H4:-1.02455358577;ZNF238:-1.03017405272;HAND1,2:-1.04652202993;ESRRA:-1.07026956115;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.09206098855;RORA:-1.24462324366;ESR1:-1.33855361898;NANOG{mouse}:-1.3979898548;TGIF1:-1.41341819801;FOX{F1,F2,J1}:-1.45571060634 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10783-110G9;search_select_hide=table117:FF:10783-110G9 | |||
}} | }} | ||
Latest revision as of 15:04, 3 June 2020
| Name: | thyroid carcinoma cell line:TCO-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11872 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11872
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11872
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.249 |
| 10 | 10 | 0.671 |
| 100 | 100 | 0.41 |
| 101 | 101 | 0.678 |
| 102 | 102 | 0.959 |
| 103 | 103 | 0.084 |
| 104 | 104 | 0.941 |
| 105 | 105 | 0.0701 |
| 106 | 106 | 0.0413 |
| 107 | 107 | 0.117 |
| 108 | 108 | 0.859 |
| 109 | 109 | 0.682 |
| 11 | 11 | 0.159 |
| 110 | 110 | 0.575 |
| 111 | 111 | 0.12 |
| 112 | 112 | 0.0358 |
| 113 | 113 | 0.12 |
| 114 | 114 | 0.0182 |
| 115 | 115 | 0.79 |
| 116 | 116 | 0.592 |
| 117 | 117 | 0.446 |
| 118 | 118 | 0.641 |
| 119 | 119 | 0.0959 |
| 12 | 12 | 0.963 |
| 120 | 120 | 0.637 |
| 121 | 121 | 0.939 |
| 122 | 122 | 0.73 |
| 123 | 123 | 0.378 |
| 124 | 124 | 0.0199 |
| 125 | 125 | 0.903 |
| 126 | 126 | 0.718 |
| 127 | 127 | 0.638 |
| 128 | 128 | 0.00225 |
| 129 | 129 | 0.023 |
| 13 | 13 | 0.765 |
| 130 | 130 | 0.0744 |
| 131 | 131 | 0.533 |
| 132 | 132 | 0.774 |
| 133 | 133 | 0.214 |
| 134 | 134 | 0.177 |
| 135 | 135 | 0.111 |
| 136 | 136 | 0.116 |
| 137 | 137 | 0.168 |
| 138 | 138 | 0.522 |
| 139 | 139 | 8.94489e-5 |
| 14 | 14 | 0.361 |
| 140 | 140 | 0.165 |
| 141 | 141 | 0.0577 |
| 142 | 142 | 0.0521 |
| 143 | 143 | 0.103 |
| 144 | 144 | 0.875 |
| 145 | 145 | 0.311 |
| 146 | 146 | 0.406 |
| 147 | 147 | 0.989 |
| 148 | 148 | 0.0654 |
| 149 | 149 | 0.0589 |
| 15 | 15 | 0.143 |
| 150 | 150 | 0.826 |
| 151 | 151 | 0.294 |
| 152 | 152 | 0.477 |
| 153 | 153 | 0.634 |
| 154 | 154 | 0.549 |
| 155 | 155 | 0.334 |
| 156 | 156 | 0.22 |
| 157 | 157 | 0.173 |
| 158 | 158 | 0.0519 |
| 159 | 159 | 0.201 |
| 16 | 16 | 0.28 |
| 160 | 160 | 0.811 |
| 161 | 161 | 0.701 |
| 162 | 162 | 0.922 |
| 163 | 163 | 0.386 |
| 164 | 164 | 0.661 |
| 165 | 165 | 0.49 |
| 166 | 166 | 0.806 |
| 167 | 167 | 0.719 |
| 168 | 168 | 0.712 |
| 169 | 169 | 0.0199 |
| 17 | 17 | 0.118 |
| 18 | 18 | 0.14 |
| 19 | 19 | 0.104 |
| 2 | 2 | 0.212 |
| 20 | 20 | 0.217 |
| 21 | 21 | 0.359 |
| 22 | 22 | 0.151 |
| 23 | 23 | 0.0152 |
| 24 | 24 | 0.826 |
| 25 | 25 | 0.47 |
| 26 | 26 | 0.707 |
| 27 | 27 | 0.101 |
| 28 | 28 | 0.865 |
| 29 | 29 | 0.699 |
| 3 | 3 | 0.291 |
| 30 | 30 | 0.937 |
| 31 | 31 | 0.497 |
| 32 | 32 | 0.262 |
| 33 | 33 | 0.411 |
| 34 | 34 | 0.128 |
| 35 | 35 | 0.0752 |
| 36 | 36 | 0.836 |
| 37 | 37 | 0.208 |
| 38 | 38 | 0.378 |
| 39 | 39 | 0.867 |
| 4 | 4 | 0.698 |
| 40 | 40 | 0.795 |
| 41 | 41 | 0.0173 |
| 42 | 42 | 0.637 |
| 43 | 43 | 0.0874 |
| 44 | 44 | 0.378 |
| 45 | 45 | 0.251 |
| 46 | 46 | 0.128 |
| 47 | 47 | 0.282 |
| 48 | 48 | 0.609 |
| 49 | 49 | 0.0917 |
| 5 | 5 | 0.0473 |
| 50 | 50 | 0.893 |
| 51 | 51 | 0.248 |
| 52 | 52 | 0.11 |
| 53 | 53 | 0.62 |
| 54 | 54 | 0.271 |
| 55 | 55 | 0.248 |
| 56 | 56 | 0.281 |
| 57 | 57 | 0.574 |
| 58 | 58 | 0.287 |
| 59 | 59 | 0.0463 |
| 6 | 6 | 0.813 |
| 60 | 60 | 0.0861 |
| 61 | 61 | 0.753 |
| 62 | 62 | 0.0927 |
| 63 | 63 | 0.409 |
| 64 | 64 | 0.544 |
| 65 | 65 | 0.0552 |
| 66 | 66 | 0.063 |
| 67 | 67 | 0.979 |
| 68 | 68 | 0.56 |
| 69 | 69 | 0.482 |
| 7 | 7 | 0.303 |
| 70 | 70 | 0.336 |
| 71 | 71 | 0.23 |
| 72 | 72 | 0.28 |
| 73 | 73 | 0.505 |
| 74 | 74 | 0.568 |
| 75 | 75 | 0.196 |
| 76 | 76 | 0.462 |
| 77 | 77 | 0.197 |
| 78 | 78 | 0.384 |
| 79 | 79 | 0.209 |
| 8 | 8 | 0.556 |
| 80 | 80 | 0.0318 |
| 81 | 81 | 0.245 |
| 82 | 82 | 0.0178 |
| 83 | 83 | 0.53 |
| 84 | 84 | 0.5 |
| 85 | 85 | 0.0122 |
| 86 | 86 | 0.23 |
| 87 | 87 | 0.766 |
| 88 | 88 | 0.98 |
| 89 | 89 | 0.0399 |
| 9 | 9 | 0.181 |
| 90 | 90 | 0.177 |
| 91 | 91 | 0.347 |
| 92 | 92 | 0.0107 |
| 93 | 93 | 0.0588 |
| 94 | 94 | 0.138 |
| 95 | 95 | 0.533 |
| 96 | 96 | 0.127 |
| 97 | 97 | 0.724 |
| 98 | 98 | 0.528 |
| 99 | 99 | 0.44 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11872
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101610 thyroid cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0002046 (thyroid gland)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101610 (thyroid cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0007123 (pharyngeal pouch 2)
UBERON:0010316 (germ layer / neural crest)
