FF:10797-110I5: Difference between revisions

Latest revision as of 15:05, 3 June 2020

Name:	tubular adenocarcinoma cell line:SUIT-2
Species:	Human (Homo sapiens)
Library ID:	CNhs11883
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	pancreas
dev stage	NA
sex	male
age	73
cell type	duct cell
cell line	SUIT-2
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005765

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11883		CAGE		DRX008031		DRR008903

Accession ID Hg19

Library id		BAM		CTSS
CNhs11883		DRZ000328		DRZ001713

Accession ID Hg38

Library id		BAM		CTSS
CNhs11883		DRZ011678		DRZ013063

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.189
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.272
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.432
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0474
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.117
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.182
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.214
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.104
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0374
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0374
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.62
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	9.208485e-4
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0374
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.376
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0374
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11883

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00336
MA0003.1	MA0003.1	0.966
MA0004.1	MA0004.1	0.508
MA0006.1	MA0006.1	0.308
MA0007.1	MA0007.1	0.578
MA0009.1	MA0009.1	0.541
MA0014.1	MA0014.1	0.365
MA0017.1	MA0017.1	0.00181
MA0018.2	MA0018.2	2.77992e-6
MA0019.1	MA0019.1	0.698
MA0024.1	MA0024.1	0.111
MA0025.1	MA0025.1	0.0191
MA0027.1	MA0027.1	0.901
MA0028.1	MA0028.1	5.19852e-4
MA0029.1	MA0029.1	0.391
MA0030.1	MA0030.1	0.00695
MA0031.1	MA0031.1	0.041
MA0035.2	MA0035.2	0.12
MA0038.1	MA0038.1	0.136
MA0039.2	MA0039.2	0.0146
MA0040.1	MA0040.1	0.907
MA0041.1	MA0041.1	0.556
MA0042.1	MA0042.1	0.744
MA0043.1	MA0043.1	0.00657
MA0046.1	MA0046.1	1.17079e-25
MA0047.2	MA0047.2	0.0379
MA0048.1	MA0048.1	0.0478
MA0050.1	MA0050.1	0.15
MA0051.1	MA0051.1	0.00673
MA0052.1	MA0052.1	0.0154
MA0055.1	MA0055.1	0.0219
MA0057.1	MA0057.1	0.212
MA0058.1	MA0058.1	0.974
MA0059.1	MA0059.1	0.548
MA0060.1	MA0060.1	3.34774e-5
MA0061.1	MA0061.1	0.00788
MA0062.2	MA0062.2	0.00647
MA0065.2	MA0065.2	0.193
MA0066.1	MA0066.1	0.11
MA0067.1	MA0067.1	0.165
MA0068.1	MA0068.1	0.433
MA0069.1	MA0069.1	0.471
MA0070.1	MA0070.1	0.551
MA0071.1	MA0071.1	0.997
MA0072.1	MA0072.1	0.549
MA0073.1	MA0073.1	0.615
MA0074.1	MA0074.1	0.972
MA0076.1	MA0076.1	0.00303
MA0077.1	MA0077.1	0.85
MA0078.1	MA0078.1	0.535
MA0079.2	MA0079.2	0.161
MA0080.2	MA0080.2	2.71571e-5
MA0081.1	MA0081.1	0.0547
MA0083.1	MA0083.1	0.796
MA0084.1	MA0084.1	0.611
MA0087.1	MA0087.1	0.334
MA0088.1	MA0088.1	0.299
MA0090.1	MA0090.1	0.716
MA0091.1	MA0091.1	0.0959
MA0092.1	MA0092.1	0.0925
MA0093.1	MA0093.1	0.577
MA0099.2	MA0099.2	0.0915
MA0100.1	MA0100.1	0.1
MA0101.1	MA0101.1	0.0599
MA0102.2	MA0102.2	0.398
MA0103.1	MA0103.1	0.0016
MA0104.2	MA0104.2	0.296
MA0105.1	MA0105.1	1.15877e-4
MA0106.1	MA0106.1	0.67
MA0107.1	MA0107.1	0.0462
MA0108.2	MA0108.2	0.0184
MA0111.1	MA0111.1	0.89
MA0112.2	MA0112.2	0.222
MA0113.1	MA0113.1	0.53
MA0114.1	MA0114.1	1.57499e-5
MA0115.1	MA0115.1	0.127
MA0116.1	MA0116.1	0.00132
MA0117.1	MA0117.1	0.0441
MA0119.1	MA0119.1	0.52
MA0122.1	MA0122.1	0.981
MA0124.1	MA0124.1	0.268
MA0125.1	MA0125.1	0.13
MA0131.1	MA0131.1	0.379
MA0135.1	MA0135.1	0.714
MA0136.1	MA0136.1	0.00635
MA0137.2	MA0137.2	0.397
MA0138.2	MA0138.2	0.259
MA0139.1	MA0139.1	0.941
MA0140.1	MA0140.1	0.715
MA0141.1	MA0141.1	0.38
MA0142.1	MA0142.1	0.644
MA0143.1	MA0143.1	0.784
MA0144.1	MA0144.1	0.614
MA0145.1	MA0145.1	0.955
MA0146.1	MA0146.1	0.181
MA0147.1	MA0147.1	0.564
MA0148.1	MA0148.1	0.00286
MA0149.1	MA0149.1	0.216
MA0150.1	MA0150.1	0.917
MA0152.1	MA0152.1	0.251
MA0153.1	MA0153.1	7.28698e-21
MA0154.1	MA0154.1	0.0135
MA0155.1	MA0155.1	0.327
MA0156.1	MA0156.1	0.364
MA0157.1	MA0157.1	0.494
MA0159.1	MA0159.1	0.425
MA0160.1	MA0160.1	0.69
MA0162.1	MA0162.1	0.925
MA0163.1	MA0163.1	4.05799e-4
MA0164.1	MA0164.1	0.816
MA0258.1	MA0258.1	0.1
MA0259.1	MA0259.1	0.369

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11883

Novel motif	Logo	P-value
1	1	0.135
10	10	0.376
100	100	0.547
101	101	0.113
102	102	0.777
103	103	0.834
104	104	0.558
105	105	0.308
106	106	0.247
107	107	0.189
108	108	0.475
109	109	0.782
11	11	0.0483
110	110	0.723
111	111	0.573
112	112	0.433
113	113	0.00569
114	114	0.446
115	115	0.751
116	116	0.24
117	117	0.646
118	118	0.949
119	119	0.126
12	12	0.666
120	120	0.15
121	121	0.725
122	122	0.975
123	123	0.0383
124	124	0.00951
125	125	0.169
126	126	0.439
127	127	0.996
128	128	0.336
129	129	0.776
13	13	0.918
130	130	0.967
131	131	0.0135
132	132	0.19
133	133	0.077
134	134	0.0332
135	135	0.029
136	136	0.0665
137	137	0.167
138	138	0.278
139	139	0.677
14	14	0.717
140	140	0.714
141	141	0.00352
142	142	0.967
143	143	0.0279
144	144	0.989
145	145	0.52
146	146	0.144
147	147	0.293
148	148	0.948
149	149	0.462
15	15	0.847
150	150	0.457
151	151	0.817
152	152	0.015
153	153	0.759
154	154	0.617
155	155	0.517
156	156	0.924
157	157	0.317
158	158	0.572
159	159	0.831
16	16	0.314
160	160	0.0285
161	161	0.187
162	162	0.82
163	163	0.345
164	164	0.22
165	165	0.272
166	166	0.966
167	167	0.581
168	168	0.488
169	169	0.486
17	17	0.453
18	18	0.223
19	19	0.101
2	2	0.477
20	20	0.00957
21	21	0.577
22	22	0.771
23	23	0.127
24	24	0.518
25	25	0.124
26	26	0.742
27	27	0.707
28	28	0.485
29	29	0.359
3	3	0.533
30	30	0.819
31	31	0.406
32	32	5.09888e-4
33	33	0.256
34	34	0.419
35	35	0.0426
36	36	0.286
37	37	0.702
38	38	0.447
39	39	0.83
4	4	0.936
40	40	0.818
41	41	0.00347
42	42	0.919
43	43	0.192
44	44	0.916
45	45	0.869
46	46	0.224
47	47	0.484
48	48	0.407
49	49	0.12
5	5	0.313
50	50	0.235
51	51	0.869
52	52	0.776
53	53	0.292
54	54	0.766
55	55	0.921
56	56	0.353
57	57	0.69
58	58	0.332
59	59	0.109
6	6	0.237
60	60	0.856
61	61	0.628
62	62	0.206
63	63	0.677
64	64	0.243
65	65	0.291
66	66	0.86
67	67	0.0954
68	68	0.101
69	69	0.621
7	7	0.446
70	70	0.709
71	71	0.0493
72	72	0.268
73	73	0.00881
74	74	0.745
75	75	0.998
76	76	0.103
77	77	0.202
78	78	0.384
79	79	0.00147
8	8	0.783
80	80	0.0256
81	81	0.0117
82	82	0.0569
83	83	0.76
84	84	0.536
85	85	0.679
86	86	0.422
87	87	0.882
88	88	0.122
89	89	0.176
9	9	0.156
90	90	0.265
91	91	0.0547
92	92	0.343
93	93	0.47
94	94	0.0425
95	95	0.74
96	96	0.119
97	97	0.594
98	98	0.6
99	99	0.404

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11883

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000083 epithelial cell of pancreas
DOID:4929 tubular adenocarcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100167 adenocarcinoma cell line sample
FF:0103493 SUIT-2 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000083 (epithelial cell of pancreas)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
170 (endocrine gland cancer)
1793 (pancreatic cancer)
299 (adenocarcinoma)
4929 (tubular adenocarcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100794 (pancreatic cancer cell line sample)
0100167 (adenocarcinoma cell line sample)
0103493 (SUIT-2 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007924
+|DRA_sample_Accession=CAGE@SAMD00005765
-|accession_numbers=CAGE;DRX008031;DRR008903;DRZ000328;DRZ001713
+|accession_numbers=CAGE;DRX008031;DRR008903;DRZ000328;DRZ001713;DRZ011678;DRZ013063
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000083,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.10!125.22!ELF3;;chr20:42984330..42984364,+!p2@HNF4A!1.95!87.31!HNF4A;;chr3:12330560..12330579,+!p1@PPARG!1.84!77.61!PPARG;;chr11:34645791..34645836,+!p3@EHF!1.80!62.43!EHF;;chr6:34204921..34204939,+!p3@HMGA1!1.75!1563.86!HMGA1;;chr1:201979703..201979721,+!p2@ELF3!1.72!51.92!ELF3;;chr17:36105042..36105060,-!p1@HNF1B!1.64!43.12!HNF1B;;chr13:73633131..73633149,+!p1@KLF5!1.63!426.13!KLF5;;chr5:321810..321877,+!p1@AHRR!1.33!63.33!AHRR;;chr17:46687959..46688007,-!p2@HOXB7!1.31!26.86!HOXB7;;chr17:35294075..35294102,+!p1@ENST00000559335!1.28!18.23!LHX1;;chr17:46675558..46675577,-!p2@HOXB6!1.25!16.80!HOXB6;;chr18:55102628..55102646,+!p2@ONECUT2!1.25!16.71!ONECUT2;;chr17:46682321..46682362,-!p1@HOXB6!1.23!16.08!HOXB6;;chr5:134369905..134369972,-!p1@PITX1!1.22!23.98!PITX1;;chr17:46675420..46675465,-!p3@HOXB6!1.22!17.97!HOXB6;;chr16:86612046..86612065,+!p3@FOXL1!1.22!15.72!FOXL1;;chr11:61520075..61520136,+!p1@C11orf9!1.21!32.34!C11orf9;;chr13:28543285..28543314,-!p2@CDX2!1.21!15.09!CDX2;;chr11:65667884..65667895,-!p2@FOSL1!1.18!53.98!FOSL1;;chr19:4153613..4153652,+!p1@CREB3L3!1.18!14.19!CREB3L3;;chr3:138665760..138665772,-!p3@FOXL2!1.18!14.01!FOXL2;;chr11:65687362..65687436,+!p3@DRAP1!1.17!62.97!DRAP1;;chr8:76319876..76319926,+!p1@HNF4G!1.17!13.83!HNF4G;;chr3:138665937..138665968,-!p1@FOXL2!1.17!13.74!FOXL2;;chr18:55102598..55102623,+!p1@ONECUT2!1.17!13.74!ONECUT2;;chr6:34204672..34204692,+!p1@HMGA1!1.13!1385.91!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!1.13!33.77!HMGA2;;chr6:34210478..34210481,+!p8@HMGA1!1.12!12.31!HMGA1;;chr13:100634031..100634045,+!p1@ZIC2!1.12!12.04!ZIC2;;chr1:199996733..199996781,+!p1@NR5A2!1.11!11.86!NR5A2;;chr12:66218598..66218645,+!p2@HMGA2!1.10!54.16!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!1.10!36.56!GATA6;;chr16:86612149..86612161,+!p2@FOXL1!1.10!11.68!FOXL1;;chr12:66218836..66218888,+!p1@HMGA2!1.09!105.81!HMGA2;;chr16:86612320..86612394,+!p1@FOXL1!1.09!11.23!FOXL1;;chr20:42543441..42543497,+!p1@TOX2!1.05!46.62!TOX2;;chr3:193853927..193853944,+!p1@HES1!1.04!325.62!HES1;;chr7:97840743..97840786,+!p1@BHLHA15!1.04!9.88!BHLHA15;;chr11:65667846..65667868,-!p1@FOSL1!1.02!251.42!FOSL1;;chr11:120107344..120107351,+!p1@POU2F3!1.02!11.50!POU2F3;;chr13:100634130..100634143,+!p3@ZIC2!1.01!9.16!ZIC2;;chr17:46703212..46703238,-!p2@HOXB9!1.01!9.16!HOXB9;;chr2:113994526..113994556,-!p3@PAX8!0.99!8.80!PAX8;;chr3:138665774..138665786,-!p5@FOXL2!0.99!8.80!FOXL2;;chr20:42543506..42543549,+!p2@TOX2!0.98!21.20!TOX2;;chr10:114889045..114889074,+!p12@TCF7L2!0.98!8.62!TCF7L2;;chr13:28494130..28494168,+!p1@PDX1!0.98!8.62!PDX1;;chr3:138665969..138665993,-!p2@FOXL2!0.98!8.44!FOXL2;;chr6:10412600..10412637,-!p1@TFAP2A!0.97!14.01!TFAP2A;;chr3:138665702..138665729,-!p7@FOXL2!0.97!8.35!FOXL2;;chr7:27153454..27153469,-!p2@HOXA3!0.96!8.17!HOXA3;;chr10:114889016..114889037,+!p15@TCF7L2!0.96!8.08!TCF7L2;;chr10:114886551..114886601,+!p11@TCF7L2!0.95!7.99!TCF7L2;;chr17:41622765..41622821,-!p2@ETV4!0.94!11.95!ETV4;;chr6:10415276..10415341,-!p2@TFAP2A!0.94!9.43!TFAP2A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.94!7.72!HOXC5;;chr12:66218183..66218209,+!p4@HMGA2!0.93!14.64!HMGA2;;chr20:50159198..50159299,-!p1@NFATC2!0.93!11.05!NFATC2;;chr10:8096772..8096787,+!p2@GATA3!0.92!8.80!GATA3;;chr2:157189180..157189290,-!p1@NR4A2!0.91!39.07!NR4A2;;chr11:31832658..31832681,-!p1@PAX6!0.91!7.10!PAX6;;chr1:200011711..200011752,+!p3@NR5A2!0.91!7.10!NR5A2;;chr16:86612174..86612188,+!p4@FOXL1!0.90!6.92!FOXL1;;chr5:137801160..137801176,+!p1@EGR1!0.89!712.58!EGR1;;chr3:12329397..12329433,+!p2@PPARG!0.89!15.81!PPARG;;chr12:66218212..66218244,+!p5@HMGA2!0.88!9.79!HMGA2;;chr17:46675469..46675481,-!p4@HOXB6!0.88!6.65!HOXB6;;chr10:114886405..114886424,+!p26@TCF7L2!0.88!6.56!TCF7L2;;chr5:134369879..134369898,-!p2@PITX1!0.87!6.38!PITX1;;chr1:119530493..119530572,-!p1@TBX15!0.86!6.29!TBX15;;chr1:25256756..25256774,-!p1@RUNX3!0.85!11.77!RUNX3;;chr17:41622925..41622976,-!p3@ETV4!0.85!9.34!ETV4;;chr10:8096631..8096660,+!p1@GATA3!0.85!7.55!GATA3;;chr13:100623375..100623425,-!p1@ZIC5!0.85!6.11!ZIC5;;chr12:57914286..57914304,-!p1@DDIT3!0.84!228.52!DDIT3;;chr9:2158443..2158481,+!p2@SMARCA2!0.84!17.61!SMARCA2;;chr3:12329358..12329393,+!p3@PPARG!0.84!15.36!PPARG;;chr13:73636621..73636647,+!p4@KLF5!0.84!5.93!KLF5;;chr12:57916466..57916523,+!p2@MBD6!0.83!55.15!MBD6;;chr13:73636252..73636307,+!p2@KLF5!0.83!6.83!KLF5;;chr5:50679228..50679288,+!p1@ISL1!0.83!5.75!ISL1;;chr3:138665790..138665809,-!p4@FOXL2!0.82!5.66!FOXL2;;chr10:114886432..114886455,+!p20@TCF7L2!0.81!5.48!TCF7L2;;chr20:42984073..42984085,+!p5@HNF4A!0.81!5.48!HNF4A;;chr12:54394416..54394467,+!p5@HOXC9!0.81!5.39!HOXC9;;chr15:96869255..96869291,+!p6@NR2F2!0.79!9.88!NR2F2;;chr12:54393880..54393962,+!p1@HOXC9!0.78!5.03!HOXC9;;chr2:113994491..113994515,-!p7@PAX8!0.77!4.94!PAX8;;chr8:11561684..11561751,+!p1@GATA4!0.77!4.94!GATA4;;chr14:38064429..38064486,-!p1@FOXA1!0.77!4.85!FOXA1;;chr10:94449703..94449718,+!p1@HHEX!0.76!20.12!HHEX;;chr7:113726357..113726443,+!p1@FOXP2!0.76!8.53!FOXP2;;chr7:27239740..27239759,-!p2@HOXA13!0.76!4.76!HOXA13;;chr13:100634004..100634025,+!p2@ZIC2!0.75!4.67!ZIC2;;chr13:28543253..28543276,-!p5@CDX2!0.75!4.58!CDX2;;chr15:67358163..67358192,+!p1@SMAD3!0.74!116.68!SMAD3;;chr5:174151553..174151610,+!p1@MSX2!0.74!7.90!MSX2;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.74!HOXB7;;chr17:46687935..46687950,-!p3@HOXB7!0.73!4.40!HOXB7;;chr11:65687158..65687216,+!p4@DRAP1!0.72!26.86!DRAP1;;chr5:72744594..72744609,-!p1@FOXD1!0.72!21.83!FOXD1;;chr11:47279504..47279563,+!p1@NR1H3!0.72!10.42!NR1H3;;chr3:168864315..168864339,-!p2@MECOM!0.72!7.37!MECOM;;chr10:8095593..8095625,+!p3@GATA3!0.72!5.12!GATA3;;chr11:65686732..65686756,+!p2@DRAP1!0.71!19.22!DRAP1;;chr17:41623692..41623715,-!p1@ETV4!0.70!19.13!ETV4;;chr1:59249645..59249656,-!p4@JUN!0.70!11.14!JUN;;chr1:200008734..200008765,+!p2@NR5A2!0.70!4.04!NR5A2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.70!4.04!HOXC5;;chr10:94449675..94449694,+!p2@HHEX!0.69!11.50!HHEX;;chr18:19749517..19749531,+!p3@GATA6!0.69!7.46!GATA6;;chr3:18486354..18486377,-!p2@SATB1!0.69!5.03!SATB1;;chr1:8483878..8483907,-!p4@RERE!0.68!16.62!RERE;;chr17:41622834..41622883,-!p6@ETV4!0.68!4.76!ETV4;;chr17:46675539..46675551,-!p7@HOXB6!0.68!3.77!HOXB6;;chr10:114710098..114710130,+!p2@TCF7L2!0.67!31.98!TCF7L2;;chr5:137804484..137804498,+!p2@EGR1!0.67!16.80!EGR1;;chr15:67418047..67418093,+!p4@SMAD3!0.67!4.85!SMAD3;;chr13:73636516..73636532,+!p3@KLF5!0.67!4.31!KLF5;;chr2:101436564..101436647,+!p1@NPAS2!0.66!85.51!NPAS2;;chr17:70117153..70117174,+!p1@SOX9!0.66!42.22!SOX9;;chr21:30671690..30671762,+!p2@BACH1!0.66!13.74!BACH1;;chr8:116681409..116681431,-!p2@TRPS1!0.66!10.96!TRPS1;;chr11:65686802..65686818,+!p6@DRAP1!0.66!6.65!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.66!4.76!DRAP1;;chr11:34645764..34645775,+!p9@EHF!0.66!3.59!EHF;;chr5:174151612..174151633,+!p2@MSX2!0.66!3.59!MSX2;;chr16:86612112..86612123,+!p5@FOXL1!0.66!3.59!FOXL1;;chr20:48807875..48807982,+!p2@CEBPB!0.65!89.02!CEBPB;;chr12:57916584..57916682,+!p1@MBD6!0.65!81.56!MBD6;;chr3:24536253..24536328,-!p1@THRB!0.65!7.19!THRB;;chr11:47279248..47279264,+!p3@NR1H3!0.65!4.04!NR1H3;;chr1:8763440..8763460,-!p2@RERE!0.64!19.67!RERE;;chr3:138665669..138665685,-!p11@FOXL2!0.64!3.41!FOXL2;;chr7:156803329..156803362,-!p1@MNX1!0.64!3.41!MNX1;;chr8:76319850..76319870,+!p4@HNF4G!0.64!3.32!HNF4G;;chr12:66218378..66218401,+!p6@HMGA2!0.63!5.48!HMGA2;;chr13:73636334..73636351,+!p6@KLF5!0.63!3.23!KLF5;;chr6:10415484..10415508,-!p3@TFAP2A!0.63!3.23!TFAP2A;;chr17:46806067..46806097,-!p1@HOXB13!0.63!3.23!HOXB13;;chr19:1753498..1753519,+!p1@ONECUT3!0.63!3.23!ONECUT3;;chr6:34205372..34205412,+!p5@HMGA1!0.62!18.77!HMGA1;;chr1:8763296..8763339,-!p9@RERE!0.62!8.89!RERE;;chr12:66218003..66218018,+!p9@HMGA2!0.62!4.04!HMGA2;;chr3:169381420..169381535,-!p1@MECOM!0.62!3.86!MECOM;;chr6:10412392..10412409,-!p4@TFAP2A!0.62!3.68!TFAP2A;;chr2:119604456..119604501,-!p2@EN1!0.62!3.14!EN1;;chr16:69599899..69599919,+!p2@NFAT5!0.61!41.77!NFAT5;;chr12:125052112..125052172,-!p2@NCOR2!0.61!33.68!NCOR2;;chr7:14029283..14029311,-!p1@ETV1!0.61!19.49!ETV1;;chr12:53774567..53774658,+!p2@SP1!0.61!17.61!SP1;;chr12:66218904..66218913,+!p11@HMGA2!0.61!3.05!HMGA2;;chr6:34204973..34204990,+!p4@HMGA1!0.60!48.33!HMGA1;;chr15:96869114..96869160,+!p11@NR2F2!0.60!4.31!NR2F2;;chr15:67418119..67418162,+!p5@SMAD3!0.60!3.41!SMAD3;;chr13:28543316..28543329,-!p4@CDX2!0.60!2.96!CDX2;;chr13:73636310..73636330,+!p5@KLF5!0.60!2.96!KLF5;;chr12:77459306..77459365,-!p1@E2F7!0.59!43.57!E2F7;;chr15:96876966..96877017,+!p12@NR2F2!0.59!4.49!NR2F2;;chr12:66218443..66218461,+!p8@HMGA2!0.59!3.86!HMGA2;;chr2:73520667..73520683,-!p1@EGR4!0.59!2.87!EGR4;;chr4:38665810..38665827,+!p1@KLF3!0.58!49.85!KLF3;;chr2:113993052..113993097,-!p2@PAX8!0.58!7.19!PAX8;;chr15:96869511..96869525,+!p16@NR2F2!0.58!3.23!NR2F2;;chr18:55102806..55102847,+!p3@ONECUT2!0.58!2.78!ONECUT2;;chr12:54394309..54394336,+!p2@HOXC9!0.58!2.78!HOXC9;;chr12:57917037..57917052,+!p9@MBD6!0.58!2.78!MBD6;;chr19:45971246..45971265,+!p1@FOSB!0.57!62.43!FOSB;;chr5:72744445..72744466,-!p2@FOXD1!0.57!5.03!FOXD1;;chr20:55204351..55204377,+!p1@TFAP2C!0.57!3.68!TFAP2C;;chr5:137804405..137804444,+!p3@EGR1!0.57!3.41!EGR1;;chr7:27239703..27239715,-!p1@HOXA13!0.57!2.69!HOXA13;;chr16:86612092..86612099,+!p6@FOXL1!0.57!2.69!FOXL1;;chr17:46703687..46703740,-!p1@HOXB9!0.57!2.69!HOXB9;;chr1:199996702..199996732,+!p5@NR5A2!0.57!2.69!NR5A2;;chr15:66994561..66994597,+!p2@SMAD6!0.56!7.37!SMAD6;;chr2:157199008..157199023,-!p3@NR4A2!0.56!6.38!NR4A2;;chr1:214161272..214161322,+!p1@PROX1!0.56!4.04!PROX1;;chr10:114709999..114710031,+!p1@TCF7L2!0.55!75.81!TCF7L2;;chr12:66218573..66218596,+!p7@HMGA2!0.55!4.13!HMGA2;;chr20:43029862..43029900,+!p1@HNF4A!0.55!2.52!HNF4A;;chr17:46126136..46126152,+!p1@NFE2L1!0.54!160.61!NFE2L1;;chr1:204042233..204042249,+!p1@SOX13!0.54!19.58!SOX13;;chr7:14028743..14028799,-!p3@ETV1!0.54!3.32!ETV1;;chr6:126102292..126102329,+!p3@NCOA7!0.53!9.52!NCOA7;;chr18:19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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
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+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/tubular%2520adenocarcinoma%2520cell%2520line%253aSUIT-2.CNhs11883.10797-110I5.hg38.nobarcode.bam
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 |id=FF:10797-110I5
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 |is_obsolete=
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-|library_id_phase_based=1:CNhs11883
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 |name=tubular adenocarcinoma cell line:SUIT-2
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@@ Line 51: / Line 60: @@
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@@ Line 90: / Line 100: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10797-110I5;search_select_hide=table117:FF:10797-110I5
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FF:10797-110I5: Difference between revisions

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Latest revision as of 15:05, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0