FF:10809-111A8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00006011 | ||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00006011 | |||
|accession_numbers=CAGE;DRX007794;DRR008666;DRZ000091;DRZ001476;DRZ011441;DRZ012826 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057144;DRR062903;DRZ007979 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:4,DOID:7 | |ancestors_in_disease_facet=DOID:4,DOID:7 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100067,FF:0103192,FF:0102586 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100067 | |fonse_cell_line=FF:0100067 | ||
|fonse_cell_line_closure=FF:0100067 | |fonse_cell_line_closure=FF:0100067 | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aG-401.CNhs11892.10809-111A8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aG-401.CNhs11892.10809-111A8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aG-401.CNhs11892.10809-111A8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aG-401.CNhs11892.10809-111A8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aG-401.CNhs11892.10809-111A8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10809-111A8 | |id=FF:10809-111A8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102586 | ||
|is_obsolete= | |||
|library_id=CNhs11892 | |||
|library_id_phase_based=2:CNhs11892 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10809 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10809 | |||
|name=Wilms' tumor cell line:G-401 | |name=Wilms' tumor cell line:G-401 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11892,LSID830,release010,COMPLETED | |profile_hcage=CNhs11892,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0220392977878354,0,0,0,0,-0.0762252346371593,0.120729266806363,-0.117181961563776,0.22954476186027,0,0,0,0,0,0,0,0,0,0,0,0.0440785955756708,0,0.343119709196486,0,0,0,0.332885138805821,0,0.596865766418514,0,0,0.0529028426755415,0,0,0,0,0,0,0,0,0,0,0,0,0.0640913856667552,0.0840927954492268,0,0,0,0,0,0,0,-0.00217572332499896,0,0,0,0,0,0.0553500491360949,0.0840927954492268,0.480203586672574,0,0,0.0885158052413069,0,0,0,0,0,0,0,0,0.0840927954492268,0,0,0,0,0,0,0,0,-0.01737712964032,0,0,0,0,0,0.011279066748302,-0.0524338579378798,0,0,0,0.234123028608941,0.162641897380335,0.0220392977878354,0,0,0,0.117058521979887,0.0863398345697755,0,0,0,0.0840927954492268,0,0,0.24248390727654,0,0,0,0.120729266806363,0,0,0,0,0,0,-0.0360089605192796,0.0840927954492268,0,0,0.0429498676829354,0.053870671285941,0,0,0.120729266806363,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.215093873217593,0.117058521979887,0,0,0.154514135252951,0,0,0,0,0,0,0,0,-0.126449608479202,0.0220392977878354,0.568940390363413,0.124733372796135,0,0,-0.22609254565257,0,0,0,0,0,0.0840927954492268,0,0,0,-0.128119866952565,0,-0.0504125515893149,0.0220392977878354,0.0440785955756708,0,0,-0.0071097956719711,-0.305472230898407,0,0.050558974221161,-0.0683442610773682,0,0.111064701131181,0,0,0.194400032689233,0,0.0942143894238527,-0.0386415727477466,-0.221611588102807,0.663570097331177,0.0739246079139828,0,0,0,-0.273841220124585,-0.934286117943661,0,0,0.304972890835036,-0.120984985157478,0,0,-0.391044581551635,0,-0.0378933697001529,0.195109334592551,0,0.314777025030006,0,0,0,0,0,0,0,0,0,0,0,0.346117122147405,-0.0344187412582022,0.0824039311910169,0.0840927954492268,0.0840927954492268,0.0440785955756708,-0.466104789618584,0,0,-0.373286155956567,0.0464279992727513,0.0130780400762558,0.139347694238109,0,-0.302389727009913,-0.0414534667583345,0.390913449087866,-0.164907240627518,-0.103323253795468,-0.189981719549847,0,-0.0140340427141039,0.0231542604841367,0.14745274932897,-0.080718014926274,0.0232078417710074,-0.241977654376049,-0.0889136256394867,0,0.0840927954492268,0,-0.283750273851109,0,0,-0.174513631943304,0.180783862535344,0.161225352237232,0.0650692501540628,0.606050007461393,-0.0213961258609541,0.0445602669925562,-0.242342579679001,0.0092853222691409,0.147705605032512,0.0182297486957383,0,0.0408721140865855,-0.0653766089088535,-0.0219540586938004,0.114938901197798,0,0.0932184861041986,0.0157485343718586,0.0824039311910169,0.0319902050042192,0.0918355158192539,0,-0.039479074816955,0.278301619345332,0,0,0.185859432454404,0.0440785955756708,0,0.0550282538820033,-0.161328183622993,0.18251199142663,0,-0.0152449587147177,0,0.00712185276581995,0.0395167347447122,0.0843326012477084,0.00850423779555662,0,0.0322902926624082,0,-0.0214412254170618,-0.338367382009783,0.0944208558558488,0.325283794760671,0.234123028608941,0.000293140600745811,-0.131184703835146,0.0225026817864582,-0.573845991572633,0.0302064386595373,-0.0881268324752877,0,-0.152779676141903,-0.679498131621524,-0.0181096256397106,-0.0725420465311516,0,0.0575192666547253,0,0.0158641173568617,0.00619461044363675,-0.056382639332496,-0.0153721479613217,0.37727349578625,0.0694236026380688,0,-0.02802680772512,-0.236220330963658,0.0440785955756708,0.0151983120246562,-0.0194494829878041,0.215093873217593,-0.106288487758969,-0.0524338579378798,0.252990274158968,0.115951862965755,0,-0.0507759895248665,0,0,-0.00484891027417331,-0.0496166053099849,0.0440785955756708,-0.191591868097764,-0.231038954806223,-0.0394787705341525,-0.0318782779857073,0.120729266806363,0,-0.0563931724784645,0,0.863478713917574,-0.0949402061196104,-0.0203026060698404,0.470945513509946,-0.253326341486756,0.0169626883778959,0.996897239395199,0,0,0.180766720973155,0.0440785955756708,0.603862776078854,0,0,0.018167113295445,0,0,0.2164193422511,0,0.00331631572704069,0,0,0,0,0.000669989464824215,0,0,0.248941049925165,-0.0173611336518549,0,0.123100985733477,0,0.0440785955756708,0,0,0.0840927954492268,0,0.085992207547785,0,-0.281807859691475,0.129722610723578,0.0628420167779835,0.102411031127795,0.0220392977878354,0.0220392977878354,0,0.361472545361705,-0.01737712964032,0.0440785955756708,0.0539967259567721,0,0,0,0,-0.00204819433998457,0,0,0,0.0220392977878354,0.0263623383955628,-0.0762539750674895,0,0,0,0.172679669139551,0,0,0,0,0.0278728187410597,0,0.0091260710844323,0.0237070625541563,0,-0.0759672849841933,1.10953570335945,0,-0.311572304156144,0.0117971788510141,0.285322647108461,0,0,0.602131582127686,0,0,0.124218954446017,-0.0382916273899956,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0.0440785955756708,0,0,0.39716401256961,0,0,0,0,0,-0.370226903615893,-0.0922240566585104,0.120729266806363,0,0,0,0,0,0,-0.0241060230789031,-0.0928351347497351,0,0,0,0,0,0.0840927954492268,0,0,0.404576336817048,0.120729266806363,0,0,0,0,0.480203586672574,0,0.0440785955756708,0,0.0440785955756708,0.415010928144869,0,0,-0.156632865387151,0,0.0192257452306746,0,0,0,0,0,0,0,0,0,0,0,-0.079240490459777,-0.117181961563776,0,0.0840927954492268,0,0,0,0.120729266806363,0,-0.0889738657516867,0,0.0440785955756708,0,0,0.0068448930973856,0,0,0,0.18777347063161,0,-0.0762252346371593,0,0,0,0,0,0.0247698594327759,0,0,0,0,0,0,0,0,0,0,0,0.107546936608796,0,0,0,-0.0876037017844946,0.0220392977878354,-0.203114720523683,0.093158534624663,0,0,0.0080684040601186,0,0,0,0,0,0,-0.0093011262406917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0840927954492268,0,0,0,0,0,0,-0.0193215297603015,0,0,0,0,0,0,0,0.596865766418514,0,0,-0.0499864120759128,0,0,0,0.00418003726859897,0,0,0.058905680313612,0.335897681092307,0.132582362611239,0,0,0,0.520804277416283,0,0,0.00786264975239792,0.0840927954492268,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343119709196486,0,0,0,0,0,0,0,0,0,0,0,0,0.0420463977246134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00803503444919685,0.120729266806363,0,0.0840927954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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 79: | ||
|rna_tube_id=111A8 | |rna_tube_id=111A8 | ||
|rna_weight_ug=49.67244 | |rna_weight_ug=49.67244 | ||
|rnaseq_library_id=RDhi10087 | |||
|sample_age=3 months | |sample_age=3 months | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb9065 | |sample_cell_catalog=jcrb9065 | ||
|sample_cell_line=G-401 | |sample_cell_line=G-401 | ||
| Line 69: | Line 94: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.45047095673243e-279!GO:0043226;organelle;3.84068357695748e-237!GO:0043229;intracellular organelle;2.01364653487583e-236!GO:0043227;membrane-bound organelle;1.86905509340853e-232!GO:0043231;intracellular membrane-bound organelle;2.34302360498533e-232!GO:0005737;cytoplasm;1.96969856753585e-180!GO:0044422;organelle part;4.04939401508119e-168!GO:0044446;intracellular organelle part;2.64141150705678e-166!GO:0044444;cytoplasmic part;2.14122077271932e-128!GO:0032991;macromolecular complex;1.33134048583043e-118!GO:0005634;nucleus;4.66750579981588e-111!GO:0030529;ribonucleoprotein complex;6.33438785361973e-102!GO:0044237;cellular metabolic process;2.60583690457931e-97!GO:0044238;primary metabolic process;5.33282133923222e-97!GO:0043170;macromolecule metabolic process;8.81001931210408e-93!GO:0044428;nuclear part;1.0460341155473e-89!GO:0003723;RNA binding;2.77405587784356e-89!GO:0043233;organelle lumen;2.34228127196566e-84!GO:0031974;membrane-enclosed lumen;2.34228127196566e-84!GO:0005739;mitochondrion;1.0187807741712e-78!GO:0005515;protein binding;7.4381264707759e-65!GO:0006396;RNA processing;2.6381525982291e-63!GO:0043234;protein complex;1.07574132453062e-59!GO:0043283;biopolymer metabolic process;1.30301962413559e-57!GO:0005840;ribosome;1.57464135084124e-57!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.69588541908141e-55!GO:0016043;cellular component organization and biogenesis;8.07062647619734e-54!GO:0044429;mitochondrial part;8.93956972702206e-53!GO:0010467;gene expression;2.11664998697717e-51!GO:0006412;translation;5.61945924482513e-51!GO:0031981;nuclear lumen;8.58058927844899e-51!GO:0003735;structural constituent of ribosome;8.71057382683224e-50!GO:0016071;mRNA metabolic process;3.36342218277524e-48!GO:0031967;organelle envelope;2.57880226574678e-46!GO:0031975;envelope;4.65391841950187e-46!GO:0031090;organelle membrane;4.96776703682651e-46!GO:0043228;non-membrane-bound organelle;6.17977451869947e-46!GO:0043232;intracellular non-membrane-bound organelle;6.17977451869947e-46!GO:0006259;DNA metabolic process;1.77942382578048e-45!GO:0033279;ribosomal subunit;7.51275925667881e-45!GO:0008380;RNA splicing;6.38969010161412e-44!GO:0006996;organelle organization and biogenesis;1.7860105469648e-43!GO:0019538;protein metabolic process;1.10488758903571e-42!GO:0033036;macromolecule localization;1.28412785729241e-42!GO:0015031;protein transport;3.30330472343352e-42!GO:0006397;mRNA processing;5.58191640532514e-42!GO:0044249;cellular biosynthetic process;4.14551531436844e-39!GO:0065003;macromolecular complex assembly;8.20934685678239e-39!GO:0046907;intracellular transport;9.18218750458583e-39!GO:0008104;protein localization;1.71356661292007e-38!GO:0045184;establishment of protein localization;9.40458185683219e-38!GO:0044260;cellular macromolecule metabolic process;1.71068268907908e-37!GO:0003676;nucleic acid binding;3.01400693804437e-37!GO:0005829;cytosol;3.02320925624334e-37!GO:0044267;cellular protein metabolic process;4.35972413694751e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.35972413694751e-37!GO:0009058;biosynthetic process;2.05114173895802e-36!GO:0007049;cell cycle;2.58290277626278e-35!GO:0009059;macromolecule biosynthetic process;4.92936000757217e-34!GO:0022607;cellular component assembly;5.03983289015996e-34!GO:0005740;mitochondrial envelope;4.41494048220942e-32!GO:0019866;organelle inner membrane;4.58224131776444e-32!GO:0005681;spliceosome;9.03562034723676e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.2517215716184e-31!GO:0006886;intracellular protein transport;1.00010089428219e-30!GO:0005654;nucleoplasm;4.77537408312516e-30!GO:0031966;mitochondrial membrane;1.09685793919342e-29!GO:0005743;mitochondrial inner membrane;2.80786764829443e-29!GO:0000166;nucleotide binding;3.01138967302295e-28!GO:0006974;response to DNA damage stimulus;1.44929353289966e-27!GO:0022402;cell cycle process;8.14865860317175e-27!GO:0044445;cytosolic part;8.59333936740806e-27!GO:0051649;establishment of cellular localization;2.08921207919568e-26!GO:0000278;mitotic cell cycle;2.44375121331075e-26!GO:0016070;RNA metabolic process;7.51407797422274e-26!GO:0051641;cellular localization;1.66299742771402e-25!GO:0005694;chromosome;2.5704103522731e-25!GO:0006119;oxidative phosphorylation;1.88649756358697e-24!GO:0006281;DNA repair;3.61375172119189e-24!GO:0044451;nucleoplasm part;4.03157955172484e-24!GO:0031980;mitochondrial lumen;5.19916110035071e-24!GO:0005759;mitochondrial matrix;5.19916110035071e-24!GO:0015935;small ribosomal subunit;1.28146055558575e-23!GO:0044427;chromosomal part;2.93219366751199e-23!GO:0000087;M phase of mitotic cell cycle;5.61231574200638e-23!GO:0007067;mitosis;1.28947661288628e-22!GO:0016462;pyrophosphatase activity;1.46709778448724e-22!GO:0017111;nucleoside-triphosphatase activity;1.67535173554888e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.72551353991634e-22!GO:0015934;large ribosomal subunit;2.01105802037103e-22!GO:0044455;mitochondrial membrane part;2.63111327817859e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;2.63111327817859e-22!GO:0051301;cell division;5.93800788144559e-22!GO:0005730;nucleolus;1.33249201624029e-21!GO:0022403;cell cycle phase;1.99209302850814e-21!GO:0051276;chromosome organization and biogenesis;4.46255473909428e-21!GO:0022618;protein-RNA complex assembly;1.78738557644022e-20!GO:0006457;protein folding;1.99852749204005e-20!GO:0006512;ubiquitin cycle;4.72279736828755e-20!GO:0006260;DNA replication;3.72321333770292e-19!GO:0000279;M phase;3.72750705239442e-19!GO:0044265;cellular macromolecule catabolic process;1.78213217989289e-18!GO:0016874;ligase activity;1.82988639359208e-18!GO:0043285;biopolymer catabolic process;3.58253536551156e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.08503205721414e-18!GO:0032553;ribonucleotide binding;4.50369971503845e-18!GO:0032555;purine ribonucleotide binding;4.50369971503845e-18!GO:0005746;mitochondrial respiratory chain;8.17811235579411e-18!GO:0017076;purine nucleotide binding;8.30002102573272e-18!GO:0009719;response to endogenous stimulus;1.33098883670583e-17!GO:0005761;mitochondrial ribosome;1.91062718865267e-17!GO:0000313;organellar ribosome;1.91062718865267e-17!GO:0042254;ribosome biogenesis and assembly;3.55855438667795e-17!GO:0050136;NADH dehydrogenase (quinone) activity;4.83563561383806e-17!GO:0003954;NADH dehydrogenase activity;4.83563561383806e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.83563561383806e-17!GO:0009057;macromolecule catabolic process;6.00517826128494e-17!GO:0008135;translation factor activity, nucleic acid binding;6.99542045287415e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;7.96723721314639e-17!GO:0031965;nuclear membrane;1.23593759043881e-16!GO:0019941;modification-dependent protein catabolic process;1.41959632386526e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.41959632386526e-16!GO:0048770;pigment granule;1.56296891189794e-16!GO:0042470;melanosome;1.56296891189794e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.59527880844668e-16!GO:0044257;cellular protein catabolic process;1.84343105591753e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;2.23245692582412e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.51954875799627e-16!GO:0006605;protein targeting;2.93445895381933e-16!GO:0005524;ATP binding;3.20032587345952e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;3.20032587345952e-16!GO:0000375;RNA splicing, via transesterification reactions;3.20032587345952e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.20032587345952e-16!GO:0012505;endomembrane system;4.19278804936797e-16!GO:0044248;cellular catabolic process;5.09079932224158e-16!GO:0044453;nuclear membrane part;5.67654086392691e-16!GO:0016887;ATPase activity;6.55033775782499e-16!GO:0032559;adenyl ribonucleotide binding;7.02714403387126e-16!GO:0006323;DNA packaging;9.14006874560652e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.33608583512988e-15!GO:0030554;adenyl nucleotide binding;2.03369290437327e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.47247053044248e-15!GO:0042775;organelle ATP synthesis coupled electron transport;2.52928424049015e-15!GO:0042773;ATP synthesis coupled electron transport;2.52928424049015e-15!GO:0005635;nuclear envelope;4.15044045263368e-15!GO:0030964;NADH dehydrogenase complex (quinone);4.29894916187641e-15!GO:0045271;respiratory chain complex I;4.29894916187641e-15!GO:0005747;mitochondrial respiratory chain complex I;4.29894916187641e-15!GO:0030163;protein catabolic process;5.34944487162128e-15!GO:0042623;ATPase activity, coupled;6.71027661856361e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.32293243523252e-14!GO:0005643;nuclear pore;2.00055980092511e-14!GO:0051082;unfolded protein binding;2.31671563837333e-14!GO:0008134;transcription factor binding;3.36419368118923e-14!GO:0051186;cofactor metabolic process;7.12875180967659e-14!GO:0004386;helicase activity;9.75216723042018e-14!GO:0015630;microtubule cytoskeleton;1.55435442082638e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.68917551073892e-13!GO:0065002;intracellular protein transport across a membrane;3.16879418603669e-13!GO:0050657;nucleic acid transport;4.95111543309714e-13!GO:0051236;establishment of RNA localization;4.95111543309714e-13!GO:0050658;RNA transport;4.95111543309714e-13!GO:0006399;tRNA metabolic process;5.96831836679267e-13!GO:0006403;RNA localization;6.38162046228762e-13!GO:0005783;endoplasmic reticulum;6.39426193567349e-13!GO:0051726;regulation of cell cycle;7.5248793875041e-13!GO:0048193;Golgi vesicle transport;9.28026557745852e-13!GO:0006333;chromatin assembly or disassembly;9.41535080942142e-13!GO:0003743;translation initiation factor activity;1.02257865410198e-12!GO:0016604;nuclear body;1.03954777183944e-12!GO:0006413;translational initiation;1.09704310244063e-12!GO:0000785;chromatin;1.31314787452582e-12!GO:0000074;regulation of progression through cell cycle;1.55787764699467e-12!GO:0065004;protein-DNA complex assembly;1.8747757973929e-12!GO:0008026;ATP-dependent helicase activity;4.10097132595293e-12!GO:0046930;pore complex;5.88628419031055e-12!GO:0006364;rRNA processing;7.90211285636631e-12!GO:0044432;endoplasmic reticulum part;8.72774765286578e-12!GO:0043412;biopolymer modification;1.29552118092033e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.87294387171e-11!GO:0016072;rRNA metabolic process;2.07425494485543e-11!GO:0006732;coenzyme metabolic process;3.45952219515623e-11!GO:0008565;protein transporter activity;4.01727337815981e-11!GO:0006913;nucleocytoplasmic transport;4.95364056323412e-11!GO:0006446;regulation of translational initiation;5.09690563891531e-11!GO:0051028;mRNA transport;5.77982112041286e-11!GO:0051169;nuclear transport;1.44873778867342e-10!GO:0006461;protein complex assembly;1.78295927760282e-10!GO:0016607;nuclear speck;2.06144062258259e-10!GO:0030532;small nuclear ribonucleoprotein complex;2.3962731998418e-10!GO:0009055;electron carrier activity;2.55747957752526e-10!GO:0009259;ribonucleotide metabolic process;3.22302484066597e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.7489709959576e-10!GO:0005819;spindle;5.09661095928912e-10!GO:0006163;purine nucleotide metabolic process;6.43282911623719e-10!GO:0016192;vesicle-mediated transport;7.1720005571988e-10!GO:0009056;catabolic process;7.26077981262612e-10!GO:0016568;chromatin modification;7.86065512848909e-10!GO:0043687;post-translational protein modification;8.84247855637406e-10!GO:0005794;Golgi apparatus;1.03673318763228e-09!GO:0006464;protein modification process;1.26163270282983e-09!GO:0017038;protein import;1.36361676110348e-09!GO:0006334;nucleosome assembly;1.39094824998734e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.49660954519481e-09!GO:0003697;single-stranded DNA binding;1.76641665197024e-09!GO:0031497;chromatin assembly;2.35420816009593e-09!GO:0008639;small protein conjugating enzyme activity;2.76557993605357e-09!GO:0043566;structure-specific DNA binding;2.86811377353197e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.88623499444146e-09!GO:0006164;purine nucleotide biosynthetic process;2.9122989284053e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.08356117557531e-09!GO:0004812;aminoacyl-tRNA ligase activity;3.08356117557531e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.08356117557531e-09!GO:0000775;chromosome, pericentric region;3.2285843983023e-09!GO:0009260;ribonucleotide biosynthetic process;4.18598235750513e-09!GO:0009060;aerobic respiration;4.70967825814011e-09!GO:0004842;ubiquitin-protein ligase activity;5.14294762330716e-09!GO:0009150;purine ribonucleotide metabolic process;5.30163439682858e-09!GO:0003712;transcription cofactor activity;5.37031691264477e-09!GO:0006261;DNA-dependent DNA replication;5.5225860843496e-09!GO:0019787;small conjugating protein ligase activity;5.92687945135225e-09!GO:0043038;amino acid activation;9.49356820573857e-09!GO:0006418;tRNA aminoacylation for protein translation;9.49356820573857e-09!GO:0043039;tRNA aminoacylation;9.49356820573857e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.41955659618983e-08!GO:0015986;ATP synthesis coupled proton transport;1.53239513389123e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.53239513389123e-08!GO:0045333;cellular respiration;1.81809038648109e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.03535438474082e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.27713004559386e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.46732739518146e-08!GO:0005813;centrosome;2.63268867642447e-08!GO:0016779;nucleotidyltransferase activity;2.75997553847452e-08!GO:0005789;endoplasmic reticulum membrane;2.77077061768888e-08!GO:0005815;microtubule organizing center;2.89913704409474e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.5091989999687e-08!GO:0009141;nucleoside triphosphate metabolic process;4.49464247254039e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.38567706736581e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.38567706736581e-08!GO:0051188;cofactor biosynthetic process;5.58548516982928e-08!GO:0016881;acid-amino acid ligase activity;7.8911124335513e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.93311861191678e-08!GO:0009144;purine nucleoside triphosphate metabolic process;7.93311861191678e-08!GO:0006099;tricarboxylic acid cycle;1.23729302682094e-07!GO:0046356;acetyl-CoA catabolic process;1.23729302682094e-07!GO:0019829;cation-transporting ATPase activity;1.26514954366824e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.26634387044626e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.26634387044626e-07!GO:0046034;ATP metabolic process;1.40180623354028e-07!GO:0006754;ATP biosynthetic process;1.54346253925055e-07!GO:0006753;nucleoside phosphate metabolic process;1.54346253925055e-07!GO:0007051;spindle organization and biogenesis;1.95182124005811e-07!GO:0043623;cellular protein complex assembly;2.14709694021183e-07!GO:0000245;spliceosome assembly;2.56491010650755e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.56741258416133e-07!GO:0006084;acetyl-CoA metabolic process;2.64004179309242e-07!GO:0006366;transcription from RNA polymerase II promoter;3.02750982718318e-07!GO:0005667;transcription factor complex;3.18704336129803e-07!GO:0009117;nucleotide metabolic process;3.71688338751717e-07!GO:0007005;mitochondrion organization and biogenesis;3.79768892226688e-07!GO:0012501;programmed cell death;4.62310108292911e-07!GO:0003899;DNA-directed RNA polymerase activity;5.20847338536553e-07!GO:0032446;protein modification by small protein conjugation;6.31614371002262e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.73802827909361e-07!GO:0045259;proton-transporting ATP synthase complex;7.24446471754774e-07!GO:0051329;interphase of mitotic cell cycle;7.5992337526266e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.87168407085366e-07!GO:0008094;DNA-dependent ATPase activity;9.42345290681054e-07!GO:0006915;apoptosis;1.01009792342018e-06!GO:0050794;regulation of cellular process;1.02337590758134e-06!GO:0005793;ER-Golgi intermediate compartment;1.03693683779553e-06!GO:0005768;endosome;1.07790499637381e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.16215499310574e-06!GO:0009108;coenzyme biosynthetic process;1.17165436611961e-06!GO:0005657;replication fork;1.25294439795127e-06!GO:0016567;protein ubiquitination;1.34617224718569e-06!GO:0051187;cofactor catabolic process;1.78250662296905e-06!GO:0009109;coenzyme catabolic process;1.9520289005902e-06!GO:0000075;cell cycle checkpoint;2.00733338754868e-06!GO:0016740;transferase activity;2.10560256874063e-06!GO:0005762;mitochondrial large ribosomal subunit;2.22680040152164e-06!GO:0000315;organellar large ribosomal subunit;2.22680040152164e-06!GO:0006606;protein import into nucleus;2.49857759224903e-06!GO:0006752;group transfer coenzyme metabolic process;2.57837831880697e-06!GO:0051170;nuclear import;2.89478508639592e-06!GO:0008219;cell death;2.90119312218264e-06!GO:0016265;death;2.90119312218264e-06!GO:0000151;ubiquitin ligase complex;2.90119312218264e-06!GO:0051427;hormone receptor binding;4.56886417713653e-06!GO:0048475;coated membrane;4.85715306834784e-06!GO:0030117;membrane coat;4.85715306834784e-06!GO:0003724;RNA helicase activity;5.38560470510079e-06!GO:0051325;interphase;5.49112354436219e-06!GO:0003682;chromatin binding;5.90980470486615e-06!GO:0003684;damaged DNA binding;8.6250901565093e-06!GO:0000314;organellar small ribosomal subunit;8.80004225954953e-06!GO:0005763;mitochondrial small ribosomal subunit;8.80004225954953e-06!GO:0030120;vesicle coat;9.82664405265936e-06!GO:0030662;coated vesicle membrane;9.82664405265936e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.00723081275269e-05!GO:0035257;nuclear hormone receptor binding;1.02735453880571e-05!GO:0006302;double-strand break repair;1.31752737020974e-05!GO:0000786;nucleosome;1.47131677344784e-05!GO:0019222;regulation of metabolic process;1.47131677344784e-05!GO:0048523;negative regulation of cellular process;1.58110124734419e-05!GO:0006613;cotranslational protein targeting to membrane;1.71744436000865e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.83415188987461e-05!GO:0005770;late endosome;2.13770914340977e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.32046754393873e-05!GO:0005874;microtubule;2.48379526134298e-05!GO:0045786;negative regulation of progression through cell cycle;2.56803699171595e-05!GO:0008654;phospholipid biosynthetic process;2.78554880326134e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.89912782345122e-05!GO:0008033;tRNA processing;3.13004438882633e-05!GO:0051246;regulation of protein metabolic process;3.13629436895684e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;3.36023158300395e-05!GO:0003713;transcription coactivator activity;3.47535618934208e-05!GO:0044452;nucleolar part;3.61141264850475e-05!GO:0005788;endoplasmic reticulum lumen;3.6211864772473e-05!GO:0000776;kinetochore;4.0943901856497e-05!GO:0016853;isomerase activity;4.10016984682373e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;4.19591089791893e-05!GO:0031324;negative regulation of cellular metabolic process;4.89742295507479e-05!GO:0007088;regulation of mitosis;5.25437240356974e-05!GO:0019843;rRNA binding;5.26604223394105e-05!GO:0000059;protein import into nucleus, docking;5.47934973336564e-05!GO:0016363;nuclear matrix;5.6873693609626e-05!GO:0007010;cytoskeleton organization and biogenesis;5.87452621364878e-05!GO:0051168;nuclear export;6.66243625346691e-05!GO:0006839;mitochondrial transport;6.8306825891146e-05!GO:0016787;hydrolase activity;6.84404680136729e-05!GO:0006793;phosphorus metabolic process;7.50147564120484e-05!GO:0006796;phosphate metabolic process;7.50147564120484e-05!GO:0016563;transcription activator activity;7.5023003981169e-05!GO:0016564;transcription repressor activity;7.8512651412398e-05!GO:0016310;phosphorylation;8.0214466436735e-05!GO:0003924;GTPase activity;8.09464470652983e-05!GO:0050789;regulation of biological process;8.86732366652639e-05!GO:0048519;negative regulation of biological process;9.27682457087543e-05!GO:0006414;translational elongation;9.31031032779721e-05!GO:0006091;generation of precursor metabolites and energy;9.41858077349472e-05!GO:0043069;negative regulation of programmed cell death;9.7344596896098e-05!GO:0005798;Golgi-associated vesicle;9.86793839886961e-05!GO:0009165;nucleotide biosynthetic process;0.000104342734316438!GO:0043021;ribonucleoprotein binding;0.000109254309484974!GO:0044440;endosomal part;0.00011009024759434!GO:0010008;endosome membrane;0.00011009024759434!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000118944559233308!GO:0019899;enzyme binding;0.000118965893575915!GO:0004298;threonine endopeptidase activity;0.000119866442637458!GO:0003729;mRNA binding;0.000130646259813253!GO:0006626;protein targeting to mitochondrion;0.000135392696205937!GO:0016859;cis-trans isomerase activity;0.000138466047826446!GO:0016491;oxidoreductase activity;0.000152651370226668!GO:0006383;transcription from RNA polymerase III promoter;0.00016225901791319!GO:0007093;mitotic cell cycle checkpoint;0.000172145866973778!GO:0009892;negative regulation of metabolic process;0.000177368640913554!GO:0005525;GTP binding;0.000182346818496648!GO:0003714;transcription corepressor activity;0.000186649993709066!GO:0008186;RNA-dependent ATPase activity;0.000186818292801022!GO:0007017;microtubule-based process;0.000188703033602416!GO:0006310;DNA recombination;0.000193616937018465!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00019875972318328!GO:0006352;transcription initiation;0.000216120876095842!GO:0003690;double-stranded DNA binding;0.000216392910021821!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000216392910021821!GO:0043066;negative regulation of apoptosis;0.000219241561057221!GO:0043681;protein import into mitochondrion;0.000232567419946458!GO:0007059;chromosome segregation;0.000234276443475119!GO:0043067;regulation of programmed cell death;0.00025621952535098!GO:0006916;anti-apoptosis;0.000277570601104253!GO:0031988;membrane-bound vesicle;0.0003138365203515!GO:0005769;early endosome;0.0003138365203515!GO:0045454;cell redox homeostasis;0.000324216955115419!GO:0007006;mitochondrial membrane organization and biogenesis;0.000324774227982924!GO:0042981;regulation of apoptosis;0.000368044396115987!GO:0003678;DNA helicase activity;0.000378363473682817!GO:0051052;regulation of DNA metabolic process;0.000396038426907978!GO:0005684;U2-dependent spliceosome;0.000397022012775244!GO:0008250;oligosaccharyl transferase complex;0.000415401897058554!GO:0046474;glycerophospholipid biosynthetic process;0.000425544622100913!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000448580581648188!GO:0007052;mitotic spindle organization and biogenesis;0.000465661832021223!GO:0006401;RNA catabolic process;0.000468482935324212!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000471093905969081!GO:0016741;transferase activity, transferring one-carbon groups;0.000476550482739007!GO:0016023;cytoplasmic membrane-bound vesicle;0.000486872153105063!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000493732528951265!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000500595394236047!GO:0005048;signal sequence binding;0.000503539106893715!GO:0031982;vesicle;0.000523147747088726!GO:0030880;RNA polymerase complex;0.000523147747088726!GO:0006402;mRNA catabolic process;0.000560595909748738!GO:0004004;ATP-dependent RNA helicase activity;0.000563537278402449!GO:0006612;protein targeting to membrane;0.000587922339515718!GO:0004576;oligosaccharyl transferase activity;0.000595735678755!GO:0051252;regulation of RNA metabolic process;0.000605542840501367!GO:0032508;DNA duplex unwinding;0.000605664618835344!GO:0032392;DNA geometric change;0.000605664618835344!GO:0005637;nuclear inner membrane;0.000658934837652956!GO:0005885;Arp2/3 protein complex;0.000680208327133194!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000680208327133194!GO:0008168;methyltransferase activity;0.000706404169627246!GO:0044431;Golgi apparatus part;0.000722674545372708!GO:0031124;mRNA 3'-end processing;0.000752775832400811!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000762933556071558!GO:0015399;primary active transmembrane transporter activity;0.000762933556071558!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000769258203108203!GO:0015631;tubulin binding;0.00078081717416114!GO:0051920;peroxiredoxin activity;0.000791147182711088!GO:0000082;G1/S transition of mitotic cell cycle;0.000798289798992562!GO:0031323;regulation of cellular metabolic process;0.000813799629956757!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00081947193774146!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00081947193774146!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00081947193774146!GO:0016251;general RNA polymerase II transcription factor activity;0.000852505121592156!GO:0031252;leading edge;0.000898069667941395!GO:0031410;cytoplasmic vesicle;0.000908560337917098!GO:0005758;mitochondrial intermembrane space;0.000960448963365308!GO:0048471;perinuclear region of cytoplasm;0.000987572925038704!GO:0031072;heat shock protein binding;0.0010103117713916!GO:0043488;regulation of mRNA stability;0.00101236814249807!GO:0043487;regulation of RNA stability;0.00101236814249807!GO:0032561;guanyl ribonucleotide binding;0.00113524130119487!GO:0019001;guanyl nucleotide binding;0.00113524130119487!GO:0016481;negative regulation of transcription;0.00113806264991726!GO:0006289;nucleotide-excision repair;0.00116252660008585!GO:0043284;biopolymer biosynthetic process;0.001230059556983!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00124490537773391!GO:0000428;DNA-directed RNA polymerase complex;0.00124490537773391!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00128046121750277!GO:0033116;ER-Golgi intermediate compartment membrane;0.00129060090804443!GO:0006268;DNA unwinding during replication;0.00129868833326948!GO:0046489;phosphoinositide biosynthetic process;0.00135113069725599!GO:0003711;transcription elongation regulator activity;0.00137844662049015!GO:0006818;hydrogen transport;0.00139643708552553!GO:0006350;transcription;0.00148171753929167!GO:0015992;proton transport;0.00148506968939088!GO:0006405;RNA export from nucleus;0.00162591052570474!GO:0018196;peptidyl-asparagine modification;0.0016472981826144!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0016472981826144!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00170306462043231!GO:0006672;ceramide metabolic process;0.00172015980299202!GO:0006520;amino acid metabolic process;0.00175369592107381!GO:0051087;chaperone binding;0.00176959751910931!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00180830430453051!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00180830430453051!GO:0005773;vacuole;0.00183919492539707!GO:0000922;spindle pole;0.00187719299215919!GO:0005876;spindle microtubule;0.00192363384870132!GO:0022890;inorganic cation transmembrane transporter activity;0.00201531403314093!GO:0048500;signal recognition particle;0.00207777767226832!GO:0016272;prefoldin complex;0.00218095677172587!GO:0000792;heterochromatin;0.00225530431882907!GO:0035258;steroid hormone receptor binding;0.00234471035583535!GO:0004527;exonuclease activity;0.00253738064006831!GO:0031970;organelle envelope lumen;0.00253738064006831!GO:0043596;nuclear replication fork;0.00257414350312615!GO:0006144;purine base metabolic process;0.0026446698502079!GO:0006284;base-excision repair;0.00267664267595327!GO:0008361;regulation of cell size;0.00270873299415669!GO:0006338;chromatin remodeling;0.00303054396803657!GO:0008139;nuclear localization sequence binding;0.00303595698799656!GO:0008312;7S RNA binding;0.0031096755902992!GO:0004518;nuclease activity;0.0031634001234445!GO:0006611;protein export from nucleus;0.00341611461848728!GO:0005669;transcription factor TFIID complex;0.00341611461848728!GO:0031123;RNA 3'-end processing;0.0034969655092448!GO:0046519;sphingoid metabolic process;0.00351037498758186!GO:0048487;beta-tubulin binding;0.00375973022566328!GO:0006650;glycerophospholipid metabolic process;0.00388285495061326!GO:0050662;coenzyme binding;0.00390210584908722!GO:0003746;translation elongation factor activity;0.00394275414341778!GO:0016049;cell growth;0.00403448926227586!GO:0042393;histone binding;0.00413170197359698!GO:0006378;mRNA polyadenylation;0.00418487146777926!GO:0051789;response to protein stimulus;0.00420042557615668!GO:0006986;response to unfolded protein;0.00420042557615668!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00420484671152419!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00426454714379029!GO:0008180;signalosome;0.0043750397383438!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00445575429482134!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00446986493775581!GO:0000725;recombinational repair;0.00463151490690946!GO:0000724;double-strand break repair via homologous recombination;0.00463151490690946!GO:0006595;polyamine metabolic process;0.00467395076034816!GO:0016407;acetyltransferase activity;0.00468804963843295!GO:0007050;cell cycle arrest;0.00479137557202214!GO:0046467;membrane lipid biosynthetic process;0.00489581314658123!GO:0000049;tRNA binding;0.0049004728616917!GO:0045045;secretory pathway;0.00491825441190318!GO:0000339;RNA cap binding;0.00500670617108947!GO:0006891;intra-Golgi vesicle-mediated transport;0.00500670617108947!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00505314946377102!GO:0032200;telomere organization and biogenesis;0.00511585386241878!GO:0000723;telomere maintenance;0.00511585386241878!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00554844094623274!GO:0045047;protein targeting to ER;0.00554844094623274!GO:0030867;rough endoplasmic reticulum membrane;0.00554844094623274!GO:0030521;androgen receptor signaling pathway;0.0055717860097064!GO:0030027;lamellipodium;0.00559715216054174!GO:0000228;nuclear chromosome;0.00559715216054174!GO:0007040;lysosome organization and biogenesis;0.0056150872825437!GO:0009112;nucleobase metabolic process;0.00572490606051908!GO:0043624;cellular protein complex disassembly;0.00578826403477204!GO:0000910;cytokinesis;0.00591184227996841!GO:0000323;lytic vacuole;0.00607120454244124!GO:0005764;lysosome;0.00607120454244124!GO:0044454;nuclear chromosome part;0.00611408080369917!GO:0016126;sterol biosynthetic process;0.00616174863867144!GO:0008022;protein C-terminus binding;0.00620013814890384!GO:0009451;RNA modification;0.00635861414679442!GO:0042158;lipoprotein biosynthetic process;0.00658178965471744!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00663709462155596!GO:0006695;cholesterol biosynthetic process;0.00664620567263984!GO:0005791;rough endoplasmic reticulum;0.00689952521947975!GO:0016584;nucleosome positioning;0.00710090464348781!GO:0030658;transport vesicle membrane;0.00729507263225616!GO:0030384;phosphoinositide metabolic process;0.00745480686940651!GO:0003702;RNA polymerase II transcription factor activity;0.00749297384038571!GO:0006270;DNA replication initiation;0.0075890756476987!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00759564676007579!GO:0030137;COPI-coated vesicle;0.00768710224130952!GO:0004674;protein serine/threonine kinase activity;0.00772987683348658!GO:0043601;nuclear replisome;0.00772987683348658!GO:0030894;replisome;0.00772987683348658!GO:0032259;methylation;0.00802894854656029!GO:0030036;actin cytoskeleton organization and biogenesis;0.00824252298383868!GO:0000178;exosome (RNase complex);0.00839165690705429!GO:0006497;protein amino acid lipidation;0.00845958791427563!GO:0043492;ATPase activity, coupled to movement of substances;0.00847752177021448!GO:0004003;ATP-dependent DNA helicase activity;0.00857759636309656!GO:0046483;heterocycle metabolic process;0.00862730898203643!GO:0009303;rRNA transcription;0.00891313710047997!GO:0017166;vinculin binding;0.00893801948853356!GO:0033673;negative regulation of kinase activity;0.00902454387638773!GO:0006469;negative regulation of protein kinase activity;0.00902454387638773!GO:0016197;endosome transport;0.00931904623253408!GO:0030663;COPI coated vesicle membrane;0.00932117874827261!GO:0030126;COPI vesicle coat;0.00932117874827261!GO:0005832;chaperonin-containing T-complex;0.00952120038735608!GO:0043414;biopolymer methylation;0.0095695771093818!GO:0005741;mitochondrial outer membrane;0.0095695771093818!GO:0051348;negative regulation of transferase activity;0.0095695771093818!GO:0007264;small GTPase mediated signal transduction;0.0096217894800279!GO:0000819;sister chromatid segregation;0.00963409860258388!GO:0030132;clathrin coat of coated pit;0.00974828179620651!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00984682987339156!GO:0000070;mitotic sister chromatid segregation;0.00988901964020218!GO:0000781;chromosome, telomeric region;0.00988901964020218!GO:0031902;late endosome membrane;0.00991640811247052!GO:0000139;Golgi membrane;0.00999980371233703!GO:0031968;organelle outer membrane;0.0102574680808716!GO:0009116;nucleoside metabolic process;0.010300643323285!GO:0004532;exoribonuclease activity;0.0108591009312858!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0108591009312858!GO:0031570;DNA integrity checkpoint;0.0109157295719871!GO:0006730;one-carbon compound metabolic process;0.0110825525769966!GO:0045892;negative regulation of transcription, DNA-dependent;0.0110825525769966!GO:0007021;tubulin folding;0.0113663755360764!GO:0008632;apoptotic program;0.0117230166199021!GO:0032984;macromolecular complex disassembly;0.0117230166199021!GO:0006275;regulation of DNA replication;0.0117230166199021!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0118024971612971!GO:0000118;histone deacetylase complex;0.0118642644477838!GO:0019752;carboxylic acid metabolic process;0.011979857809906!GO:0003677;DNA binding;0.0122446547077316!GO:0043022;ribosome binding;0.0123387010336066!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0125367544462868!GO:0031625;ubiquitin protein ligase binding;0.0125367544462868!GO:0042770;DNA damage response, signal transduction;0.0125367544462868!GO:0006082;organic acid metabolic process;0.0125367544462868!GO:0030660;Golgi-associated vesicle membrane;0.0127227614039604!GO:0019867;outer membrane;0.0128310255991152!GO:0007033;vacuole organization and biogenesis;0.0131923033941629!GO:0030134;ER to Golgi transport vesicle;0.0134006042603087!GO:0008017;microtubule binding;0.0135941264728913!GO:0044450;microtubule organizing center part;0.0136822840436153!GO:0008276;protein methyltransferase activity;0.0138669669920553!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0140815941290817!GO:0000209;protein polyubiquitination;0.0140815941290817!GO:0030518;steroid hormone receptor signaling pathway;0.0144997887943539!GO:0031577;spindle checkpoint;0.0144997887943539!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0146284870185202!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0146783498417199!GO:0010468;regulation of gene expression;0.0148064436964462!GO:0044262;cellular carbohydrate metabolic process;0.0148064436964462!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0155317913448117!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0157442689512854!GO:0032774;RNA biosynthetic process;0.0162794156856721!GO:0006519;amino acid and derivative metabolic process;0.0163733758776602!GO:0043241;protein complex disassembly;0.0164058229933859!GO:0006506;GPI anchor biosynthetic process;0.016610657445131!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0167634570461888!GO:0035267;NuA4 histone acetyltransferase complex;0.0171058930358264!GO:0005862;muscle thin filament tropomyosin;0.0171105849963936!GO:0006376;mRNA splice site selection;0.0173499887935648!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0173499887935648!GO:0030118;clathrin coat;0.0175666452745992!GO:0006740;NADPH regeneration;0.0178250946536796!GO:0006098;pentose-phosphate shunt;0.0178250946536796!GO:0005869;dynactin complex;0.0182679946353488!GO:0051098;regulation of binding;0.01831994316965!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0183726364070054!GO:0046966;thyroid hormone receptor binding;0.0184717694505176!GO:0051540;metal cluster binding;0.0186158100879995!GO:0051536;iron-sulfur cluster binding;0.0186158100879995!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0186480023276128!GO:0015002;heme-copper terminal oxidase activity;0.0186480023276128!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0186480023276128!GO:0004129;cytochrome-c oxidase activity;0.0186480023276128!GO:0051539;4 iron, 4 sulfur cluster binding;0.0187100082076541!GO:0043189;H4/H2A histone acetyltransferase complex;0.0187100082076541!GO:0006351;transcription, DNA-dependent;0.0190803096142898!GO:0046128;purine ribonucleoside metabolic process;0.0192577782054721!GO:0042278;purine nucleoside metabolic process;0.0192577782054721!GO:0008415;acyltransferase activity;0.0192577782054721!GO:0030176;integral to endoplasmic reticulum membrane;0.0198285559849875!GO:0008408;3'-5' exonuclease activity;0.0198316550879212!GO:0003887;DNA-directed DNA polymerase activity;0.0204602418547936!GO:0006400;tRNA modification;0.020505614125911!GO:0050681;androgen receptor binding;0.0208566706959158!GO:0030496;midbody;0.0208566706959158!GO:0004722;protein serine/threonine phosphatase activity;0.020948442502862!GO:0000123;histone acetyltransferase complex;0.0214993530385817!GO:0048037;cofactor binding;0.0216448808351849!GO:0008287;protein serine/threonine phosphatase complex;0.0217314476857059!GO:0006007;glucose catabolic process;0.0220648528021236!GO:0006360;transcription from RNA polymerase I promoter;0.0223041455162664!GO:0030127;COPII vesicle coat;0.0223892624617919!GO:0012507;ER to Golgi transport vesicle membrane;0.0223892624617919!GO:0006505;GPI anchor metabolic process;0.0225017394442096!GO:0000152;nuclear ubiquitin ligase complex;0.0228357749408179!GO:0022411;cellular component disassembly;0.0234692271528856!GO:0000726;non-recombinational repair;0.023728339288455!GO:0016746;transferase activity, transferring acyl groups;0.0237776197604764!GO:0043631;RNA polyadenylation;0.023792794387999!GO:0008097;5S rRNA binding;0.0239115146959221!GO:0006301;postreplication repair;0.0240612912850437!GO:0005663;DNA replication factor C complex;0.0240649851932609!GO:0006892;post-Golgi vesicle-mediated transport;0.0240797738433861!GO:0043130;ubiquitin binding;0.0244536906221973!GO:0032182;small conjugating protein binding;0.0244536906221973!GO:0065009;regulation of a molecular function;0.0245196527505977!GO:0007004;telomere maintenance via telomerase;0.024552579670313!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0250455872196471!GO:0047485;protein N-terminus binding;0.0256252490531737!GO:0042802;identical protein binding;0.0256872425727185!GO:0005774;vacuolar membrane;0.0258990451284643!GO:0008538;proteasome activator activity;0.0264160783570383!GO:0043407;negative regulation of MAP kinase activity;0.026851343532345!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.026851343532345!GO:0006220;pyrimidine nucleotide metabolic process;0.0269791903065717!GO:0005905;coated pit;0.0273817266717113!GO:0031371;ubiquitin conjugating enzyme complex;0.0276946987390306!GO:0000096;sulfur amino acid metabolic process;0.0284054320436734!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0295841427174474!GO:0006643;membrane lipid metabolic process;0.0297327327150601!GO:0022884;macromolecule transmembrane transporter activity;0.0298095022420696!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0298095022420696!GO:0019783;small conjugating protein-specific protease activity;0.0302523867364207!GO:0030041;actin filament polymerization;0.0302523867364207!GO:0030029;actin filament-based process;0.0305483399699364!GO:0008320;protein transmembrane transporter activity;0.0310090129929906!GO:0006644;phospholipid metabolic process;0.0310594848357405!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0311085951025827!GO:0001558;regulation of cell growth;0.0311728893749692!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.031677495218962!GO:0005095;GTPase inhibitor activity;0.031769778234236!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0318206032030523!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0318206032030523!GO:0000077;DNA damage checkpoint;0.032058555130466!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0321355009843442!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0321355009843442!GO:0004448;isocitrate dehydrogenase activity;0.0329641707349283!GO:0008610;lipid biosynthetic process;0.0330332884168738!GO:0040029;regulation of gene expression, epigenetic;0.0330446129945098!GO:0030508;thiol-disulfide exchange intermediate activity;0.0330613082184441!GO:0005784;translocon complex;0.0331351535447415!GO:0006607;NLS-bearing substrate import into nucleus;0.033251963371748!GO:0000086;G2/M transition of mitotic cell cycle;0.0338676754196825!GO:0051881;regulation of mitochondrial membrane potential;0.0339059025394988!GO:0005875;microtubule associated complex;0.0344281846481038!GO:0065007;biological regulation;0.0350693292971328!GO:0000790;nuclear chromatin;0.0371986703141466!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0373840029398794!GO:0005732;small nucleolar ribonucleoprotein complex;0.0376289721035566!GO:0006596;polyamine biosynthetic process;0.0382733909188715!GO:0004843;ubiquitin-specific protease activity;0.0383052771984713!GO:0051287;NAD binding;0.0384731266829578!GO:0016790;thiolester hydrolase activity;0.0384731266829578!GO:0004523;ribonuclease H activity;0.0404473080127065!GO:0008536;Ran GTPase binding;0.0414157853811644!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0414157853811644!GO:0030133;transport vesicle;0.0418867025224577!GO:0001832;blastocyst growth;0.0423097414714447!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0433148869244949!GO:0045039;protein import into mitochondrial inner membrane;0.0433148869244949!GO:0005652;nuclear lamina;0.0438363996944199!GO:0000793;condensed chromosome;0.0443211148121657!GO:0042769;DNA damage response, detection of DNA damage;0.0443953904313424!GO:0000175;3'-5'-exoribonuclease activity;0.0462259054930989!GO:0009083;branched chain family amino acid catabolic process;0.0462259054930989!GO:0030911;TPR domain binding;0.0471987560776307!GO:0019887;protein kinase regulator activity;0.0472381192495033!GO:0009113;purine base biosynthetic process;0.0472431517977164!GO:0007034;vacuolar transport;0.0472431517977164!GO:0000805;X chromosome;0.0474492076065355!GO:0001740;Barr body;0.0474492076065355!GO:0030119;AP-type membrane coat adaptor complex;0.0477131863336155!GO:0051128;regulation of cellular component organization and biogenesis;0.0481173494154793!GO:0009124;nucleoside monophosphate biosynthetic process;0.0481173494154793!GO:0009123;nucleoside monophosphate metabolic process;0.0481173494154793!GO:0030262;apoptotic nuclear changes;0.0487464310376603!GO:0005765;lysosomal membrane;0.0487464310376603!GO:0006778;porphyrin metabolic process;0.0488010669703732!GO:0033013;tetrapyrrole metabolic process;0.0488010669703732!GO:0004563;beta-N-acetylhexosaminidase activity;0.0491549194107821!GO:0009119;ribonucleoside metabolic process;0.0492479380129123!GO:0009081;branched chain family amino acid metabolic process;0.0492479380129123!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0492666997203658!GO:0010257;NADH dehydrogenase complex assembly;0.0492666997203658!GO:0033108;mitochondrial respiratory chain complex assembly;0.0492666997203658!GO:0017134;fibroblast growth factor binding;0.0493413802342427!GO:0006278;RNA-dependent DNA replication;0.0499151146123429 | |||
|sample_id=10809 | |sample_id=10809 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 102: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=NANOG:1.68689143108;PDX1:1.57610119739;RXR{A,B,G}:1.55006332931;NKX2-3_NKX2-5:1.51785131903;GFI1:1.35881404194;FOXQ1:1.35750297378;ONECUT1,2:1.32885654771;NFY{A,B,C}:1.24727963675;HOX{A5,B5}:1.22150485541;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.19283821072;E2F1..5:1.13198352181;ZNF143:1.12665483041;bHLH_family:1.12590756637;YY1:1.11922481074;TFDP1:1.06714958454;ZBTB6:1.06299151565;PAX8:1.04268559777;VSX1,2:1.03445068227;HOX{A6,A7,B6,B7}:1.03037925519;TP53:1.02273490056;STAT5{A,B}:1.00737151775;RFX1:0.998784246605;HOXA9_MEIS1:0.976602401435;NRF1:0.901523772413;GTF2A1,2:0.890438690836;CDX1,2,4:0.854020677272;LHX3,4:0.78862375163;TOPORS:0.778149770511;CRX:0.770337558885;ARID5B:0.764992884659;POU2F1..3:0.750898258961;MYB:0.744099973164;OCT4_SOX2{dimer}:0.733325945045;PATZ1:0.723723916465;SOX{8,9,10}:0.69636757596;GCM1,2:0.684981016789;POU3F1..4:0.671702890133;RFX2..5_RFXANK_RFXAP:0.652561464021;NR3C1:0.562068352016;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.559522701327;TEF:0.525264936135;ZNF384:0.482472334425;KLF4:0.471534116783;PAX3,7:0.420960953278;HMGA1,2:0.413064959541;ELK1,4_GABP{A,B1}:0.408298300778;XCPE1{core}:0.341804403709;HIC1:0.328985058363;SREBF1,2:0.325742409978;RREB1:0.320721344752;POU1F1:0.309223474154;EN1,2:0.308598191048;PITX1..3:0.300351588149;BREu{core}:0.300053635797;HNF4A_NR2F1,2:0.281432101162;FOXM1:0.267223922841;PPARG:0.264063645249;FOX{I1,J2}:0.259291050537;TLX1..3_NFIC{dimer}:0.24287699882;NR5A1,2:0.230730851151;ESRRA:0.224417673604;MZF1:0.221287525223;EBF1:0.183852531042;PAX4:0.177549297598;CDC5L:0.175358106533;PRRX1,2:0.156361911307;EGR1..3:0.155921035649;RBPJ:0.142378481165;CUX2:0.124581880078;FOXA2:0.115828383573;ADNP_IRX_SIX_ZHX:0.114120542929;MYOD1:0.0995015733565;UFEwm:0.0809404923845;FOXL1:0.078935501033;SP1:0.0695594442441;TFAP2{A,C}:0.0591956905451;IKZF2:0.0478953861881;SNAI1..3:0.0422949301261;REST:0.0148368405272;ZIC1..3:0.00794042160399;TEAD1:0.00633984872365;PBX1:-0.00236565556201;NKX3-2:-0.0260634240445;NR6A1:-0.0268637437201;FOXP1:-0.0613311025843;ATF2:-0.0681245543428;HNF1A:-0.0692740351506;ALX1:-0.0832061764953;TFAP2B:-0.0927263873246;MEF2{A,B,C,D}:-0.0938867637492;POU6F1:-0.105066434201;HOX{A4,D4}:-0.106120973794;EVI1:-0.109573865322;AIRE:-0.11450220681;RXRA_VDR{dimer}:-0.129622188373;TAL1_TCF{3,4,12}:-0.138706192744;PAX5:-0.139743386651;GTF2I:-0.149169614019;CREB1:-0.152987156948;ATF4:-0.161651578215;SOX17:-0.169860077029;SRF:-0.175371232666;RORA:-0.185572783336;NKX2-1,4:-0.205852853385;ZBTB16:-0.214390707183;ESR1:-0.227094042383;ZEB1:-0.228593788614;GFI1B:-0.229603285426;NKX6-1,2:-0.232711992781;GATA6:-0.233785979872;NKX2-2,8:-0.23517666146;ZNF238:-0.269203838563;GATA4:-0.269573816388;JUN:-0.271214814702;DMAP1_NCOR{1,2}_SMARC:-0.275650791863;BACH2:-0.293395012375;MED-1{core}:-0.299011699931;LEF1_TCF7_TCF7L1,2:-0.30719141258;ZNF148:-0.322646362505;FOXD3:-0.347288391046;SPIB:-0.35889345264;ZFP161:-0.367347192197;TFCP2:-0.384253609931;NFKB1_REL_RELA:-0.388097379361;BPTF:-0.38967742353;MAZ:-0.392115440791;NANOG{mouse}:-0.399140078245;LMO2:-0.41421022949;PAX1,9:-0.416948081507;MTE{core}:-0.419760075259;FOX{F1,F2,J1}:-0.43139261956;FOXP3:-0.432874602286;FOS_FOS{B,L1}_JUN{B,D}:-0.43585301027;NKX3-1:-0.442801265815;TLX2:-0.44406528484;HES1:-0.45542991162;NFE2L2:-0.48052459321;NFE2:-0.488654411217;TGIF1:-0.49144564489;FOXN1:-0.525656333851;HAND1,2:-0.541520409888;TFAP4:-0.551691200438;MYBL2:-0.553739476117;FOX{D1,D2}:-0.58874508175;HIF1A:-0.594382250173;CEBPA,B_DDIT3:-0.59769497772;NR1H4:-0.60659991409;ATF6:-0.610662461156;PAX2:-0.624917770824;HBP1_HMGB_SSRP1_UBTF:-0.62957877056;NHLH1,2:-0.629811164469;DBP:-0.639779152201;FOSL2:-0.645579186856;RUNX1..3:-0.683567586281;MTF1:-0.684790237466;POU5F1:-0.707129921129;ELF1,2,4:-0.735371277541;NFE2L1:-0.741925905298;HLF:-0.746086225999;NFIX:-0.751639706913;IKZF1:-0.755194557044;ATF5_CREB3:-0.759808301296;SPI1:-0.763907394433;NFIL3:-0.793545475829;PRDM1:-0.846054536381;ETS1,2:-0.850502432032;TBP:-0.881739685045;AR:-0.892471037875;MYFfamily:-0.893592279938;ZNF423:-0.927160970528;SMAD1..7,9:-0.937033528624;GZF1:-0.950047969677;FOXO1,3,4:-0.958215650787;HSF1,2:-0.975452598637;AHR_ARNT_ARNT2:-1.0024036756;SPZ1:-1.04230184389;SOX5:-1.05484987535;T:-1.06768713843;STAT1,3:-1.07578412013;SOX2:-1.08542627573;NFATC1..3:-1.12406599078;ALX4:-1.12525760827;TBX4,5:-1.14922225335;IRF7:-1.19011399185;STAT2,4,6:-1.21625517321;MAFB:-1.24815162869;IRF1,2:-1.27478546732;XBP1:-1.34668963979;EP300:-1.36072934341;HMX1:-1.71348431712;GLI1..3:-1.75843586872;PAX6:-1.97350649981 | |top_motifs=NANOG:1.68689143108;PDX1:1.57610119739;RXR{A,B,G}:1.55006332931;NKX2-3_NKX2-5:1.51785131903;GFI1:1.35881404194;FOXQ1:1.35750297378;ONECUT1,2:1.32885654771;NFY{A,B,C}:1.24727963675;HOX{A5,B5}:1.22150485541;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.19283821072;E2F1..5:1.13198352181;ZNF143:1.12665483041;bHLH_family:1.12590756637;YY1:1.11922481074;TFDP1:1.06714958454;ZBTB6:1.06299151565;PAX8:1.04268559777;VSX1,2:1.03445068227;HOX{A6,A7,B6,B7}:1.03037925519;TP53:1.02273490056;STAT5{A,B}:1.00737151775;RFX1:0.998784246605;HOXA9_MEIS1:0.976602401435;NRF1:0.901523772413;GTF2A1,2:0.890438690836;CDX1,2,4:0.854020677272;LHX3,4:0.78862375163;TOPORS:0.778149770511;CRX:0.770337558885;ARID5B:0.764992884659;POU2F1..3:0.750898258961;MYB:0.744099973164;OCT4_SOX2{dimer}:0.733325945045;PATZ1:0.723723916465;SOX{8,9,10}:0.69636757596;GCM1,2:0.684981016789;POU3F1..4:0.671702890133;RFX2..5_RFXANK_RFXAP:0.652561464021;NR3C1:0.562068352016;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.559522701327;TEF:0.525264936135;ZNF384:0.482472334425;KLF4:0.471534116783;PAX3,7:0.420960953278;HMGA1,2:0.413064959541;ELK1,4_GABP{A,B1}:0.408298300778;XCPE1{core}:0.341804403709;HIC1:0.328985058363;SREBF1,2:0.325742409978;RREB1:0.320721344752;POU1F1:0.309223474154;EN1,2:0.308598191048;PITX1..3:0.300351588149;BREu{core}:0.300053635797;HNF4A_NR2F1,2:0.281432101162;FOXM1:0.267223922841;PPARG:0.264063645249;FOX{I1,J2}:0.259291050537;TLX1..3_NFIC{dimer}:0.24287699882;NR5A1,2:0.230730851151;ESRRA:0.224417673604;MZF1:0.221287525223;EBF1:0.183852531042;PAX4:0.177549297598;CDC5L:0.175358106533;PRRX1,2:0.156361911307;EGR1..3:0.155921035649;RBPJ:0.142378481165;CUX2:0.124581880078;FOXA2:0.115828383573;ADNP_IRX_SIX_ZHX:0.114120542929;MYOD1:0.0995015733565;UFEwm:0.0809404923845;FOXL1:0.078935501033;SP1:0.0695594442441;TFAP2{A,C}:0.0591956905451;IKZF2:0.0478953861881;SNAI1..3:0.0422949301261;REST:0.0148368405272;ZIC1..3:0.00794042160399;TEAD1:0.00633984872365;PBX1:-0.00236565556201;NKX3-2:-0.0260634240445;NR6A1:-0.0268637437201;FOXP1:-0.0613311025843;ATF2:-0.0681245543428;HNF1A:-0.0692740351506;ALX1:-0.0832061764953;TFAP2B:-0.0927263873246;MEF2{A,B,C,D}:-0.0938867637492;POU6F1:-0.105066434201;HOX{A4,D4}:-0.106120973794;EVI1:-0.109573865322;AIRE:-0.11450220681;RXRA_VDR{dimer}:-0.129622188373;TAL1_TCF{3,4,12}:-0.138706192744;PAX5:-0.139743386651;GTF2I:-0.149169614019;CREB1:-0.152987156948;ATF4:-0.161651578215;SOX17:-0.169860077029;SRF:-0.175371232666;RORA:-0.185572783336;NKX2-1,4:-0.205852853385;ZBTB16:-0.214390707183;ESR1:-0.227094042383;ZEB1:-0.228593788614;GFI1B:-0.229603285426;NKX6-1,2:-0.232711992781;GATA6:-0.233785979872;NKX2-2,8:-0.23517666146;ZNF238:-0.269203838563;GATA4:-0.269573816388;JUN:-0.271214814702;DMAP1_NCOR{1,2}_SMARC:-0.275650791863;BACH2:-0.293395012375;MED-1{core}:-0.299011699931;LEF1_TCF7_TCF7L1,2:-0.30719141258;ZNF148:-0.322646362505;FOXD3:-0.347288391046;SPIB:-0.35889345264;ZFP161:-0.367347192197;TFCP2:-0.384253609931;NFKB1_REL_RELA:-0.388097379361;BPTF:-0.38967742353;MAZ:-0.392115440791;NANOG{mouse}:-0.399140078245;LMO2:-0.41421022949;PAX1,9:-0.416948081507;MTE{core}:-0.419760075259;FOX{F1,F2,J1}:-0.43139261956;FOXP3:-0.432874602286;FOS_FOS{B,L1}_JUN{B,D}:-0.43585301027;NKX3-1:-0.442801265815;TLX2:-0.44406528484;HES1:-0.45542991162;NFE2L2:-0.48052459321;NFE2:-0.488654411217;TGIF1:-0.49144564489;FOXN1:-0.525656333851;HAND1,2:-0.541520409888;TFAP4:-0.551691200438;MYBL2:-0.553739476117;FOX{D1,D2}:-0.58874508175;HIF1A:-0.594382250173;CEBPA,B_DDIT3:-0.59769497772;NR1H4:-0.60659991409;ATF6:-0.610662461156;PAX2:-0.624917770824;HBP1_HMGB_SSRP1_UBTF:-0.62957877056;NHLH1,2:-0.629811164469;DBP:-0.639779152201;FOSL2:-0.645579186856;RUNX1..3:-0.683567586281;MTF1:-0.684790237466;POU5F1:-0.707129921129;ELF1,2,4:-0.735371277541;NFE2L1:-0.741925905298;HLF:-0.746086225999;NFIX:-0.751639706913;IKZF1:-0.755194557044;ATF5_CREB3:-0.759808301296;SPI1:-0.763907394433;NFIL3:-0.793545475829;PRDM1:-0.846054536381;ETS1,2:-0.850502432032;TBP:-0.881739685045;AR:-0.892471037875;MYFfamily:-0.893592279938;ZNF423:-0.927160970528;SMAD1..7,9:-0.937033528624;GZF1:-0.950047969677;FOXO1,3,4:-0.958215650787;HSF1,2:-0.975452598637;AHR_ARNT_ARNT2:-1.0024036756;SPZ1:-1.04230184389;SOX5:-1.05484987535;T:-1.06768713843;STAT1,3:-1.07578412013;SOX2:-1.08542627573;NFATC1..3:-1.12406599078;ALX4:-1.12525760827;TBX4,5:-1.14922225335;IRF7:-1.19011399185;STAT2,4,6:-1.21625517321;MAFB:-1.24815162869;IRF1,2:-1.27478546732;XBP1:-1.34668963979;EP300:-1.36072934341;HMX1:-1.71348431712;GLI1..3:-1.75843586872;PAX6:-1.97350649981 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10809-111A8;search_select_hide=table117:FF:10809-111A8 | |||
}} | }} | ||
Latest revision as of 15:06, 3 June 2020
| Name: | Wilms' tumor cell line:G-401 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11892 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11892
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11892
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.857 |
| 10 | 10 | 0.166 |
| 100 | 100 | 0.161 |
| 101 | 101 | 0.929 |
| 102 | 102 | 0.0723 |
| 103 | 103 | 0.37 |
| 104 | 104 | 0.21 |
| 105 | 105 | 0.646 |
| 106 | 106 | 0.0081 |
| 107 | 107 | 0.0947 |
| 108 | 108 | 0.636 |
| 109 | 109 | 0.76 |
| 11 | 11 | 0.863 |
| 110 | 110 | 0.929 |
| 111 | 111 | 0.43 |
| 112 | 112 | 0.202 |
| 113 | 113 | 0.0443 |
| 114 | 114 | 0.0512 |
| 115 | 115 | 0.684 |
| 116 | 116 | 0.8 |
| 117 | 117 | 0.306 |
| 118 | 118 | 0.683 |
| 119 | 119 | 0.0793 |
| 12 | 12 | 0.55 |
| 120 | 120 | 0.546 |
| 121 | 121 | 0.355 |
| 122 | 122 | 0.507 |
| 123 | 123 | 0.743 |
| 124 | 124 | 0.301 |
| 125 | 125 | 0.652 |
| 126 | 126 | 0.342 |
| 127 | 127 | 0.82 |
| 128 | 128 | 0.102 |
| 129 | 129 | 0.792 |
| 13 | 13 | 0.0542 |
| 130 | 130 | 0.0419 |
| 131 | 131 | 0.257 |
| 132 | 132 | 0.722 |
| 133 | 133 | 0.316 |
| 134 | 134 | 0.247 |
| 135 | 135 | 0.0384 |
| 136 | 136 | 0.787 |
| 137 | 137 | 0.954 |
| 138 | 138 | 0.208 |
| 139 | 139 | 0.0134 |
| 14 | 14 | 0.641 |
| 140 | 140 | 0.0511 |
| 141 | 141 | 0.423 |
| 142 | 142 | 0.68 |
| 143 | 143 | 0.167 |
| 144 | 144 | 0.46 |
| 145 | 145 | 0.745 |
| 146 | 146 | 0.194 |
| 147 | 147 | 0.723 |
| 148 | 148 | 0.0122 |
| 149 | 149 | 0.078 |
| 15 | 15 | 0.213 |
| 150 | 150 | 0.721 |
| 151 | 151 | 0.0677 |
| 152 | 152 | 0.54 |
| 153 | 153 | 0.0748 |
| 154 | 154 | 0.163 |
| 155 | 155 | 0.539 |
| 156 | 156 | 0.316 |
| 157 | 157 | 0.946 |
| 158 | 158 | 0.167 |
| 159 | 159 | 0.531 |
| 16 | 16 | 0.613 |
| 160 | 160 | 0.277 |
| 161 | 161 | 0.434 |
| 162 | 162 | 0.301 |
| 163 | 163 | 0.297 |
| 164 | 164 | 0.28 |
| 165 | 165 | 0.0938 |
| 166 | 166 | 0.631 |
| 167 | 167 | 0.686 |
| 168 | 168 | 0.0389 |
| 169 | 169 | 0.249 |
| 17 | 17 | 0.624 |
| 18 | 18 | 0.181 |
| 19 | 19 | 0.262 |
| 2 | 2 | 0.2 |
| 20 | 20 | 0.431 |
| 21 | 21 | 0.698 |
| 22 | 22 | 0.433 |
| 23 | 23 | 2.69268e-4 |
| 24 | 24 | 0.86 |
| 25 | 25 | 0.437 |
| 26 | 26 | 0.377 |
| 27 | 27 | 0.0865 |
| 28 | 28 | 0.905 |
| 29 | 29 | 0.968 |
| 3 | 3 | 0.409 |
| 30 | 30 | 0.656 |
| 31 | 31 | 0.774 |
| 32 | 32 | 0.0319 |
| 33 | 33 | 0.536 |
| 34 | 34 | 0.543 |
| 35 | 35 | 0.836 |
| 36 | 36 | 0.549 |
| 37 | 37 | 0.953 |
| 38 | 38 | 0.438 |
| 39 | 39 | 0.503 |
| 4 | 4 | 0.671 |
| 40 | 40 | 0.383 |
| 41 | 41 | 0.1 |
| 42 | 42 | 0.768 |
| 43 | 43 | 0.126 |
| 44 | 44 | 0.717 |
| 45 | 45 | 0.428 |
| 46 | 46 | 0.339 |
| 47 | 47 | 0.567 |
| 48 | 48 | 0.859 |
| 49 | 49 | 0.373 |
| 5 | 5 | 0.0641 |
| 50 | 50 | 0.907 |
| 51 | 51 | 0.735 |
| 52 | 52 | 0.409 |
| 53 | 53 | 0.103 |
| 54 | 54 | 0.585 |
| 55 | 55 | 0.257 |
| 56 | 56 | 0.811 |
| 57 | 57 | 0.816 |
| 58 | 58 | 0.0312 |
| 59 | 59 | 0.15 |
| 6 | 6 | 0.998 |
| 60 | 60 | 0.0554 |
| 61 | 61 | 0.9 |
| 62 | 62 | 0.0225 |
| 63 | 63 | 0.284 |
| 64 | 64 | 0.531 |
| 65 | 65 | 0.103 |
| 66 | 66 | 0.0089 |
| 67 | 67 | 0.637 |
| 68 | 68 | 0.059 |
| 69 | 69 | 0.419 |
| 7 | 7 | 0.969 |
| 70 | 70 | 0.054 |
| 71 | 71 | 0.319 |
| 72 | 72 | 0.26 |
| 73 | 73 | 0.5 |
| 74 | 74 | 0.336 |
| 75 | 75 | 0.298 |
| 76 | 76 | 0.891 |
| 77 | 77 | 0.829 |
| 78 | 78 | 0.703 |
| 79 | 79 | 0.18 |
| 8 | 8 | 0.674 |
| 80 | 80 | 0.00378 |
| 81 | 81 | 0.488 |
| 82 | 82 | 0.159 |
| 83 | 83 | 0.467 |
| 84 | 84 | 0.727 |
| 85 | 85 | 0.0631 |
| 86 | 86 | 0.456 |
| 87 | 87 | 0.0926 |
| 88 | 88 | 0.926 |
| 89 | 89 | 0.303 |
| 9 | 9 | 0.131 |
| 90 | 90 | 0.386 |
| 91 | 91 | 0.067 |
| 92 | 92 | 0.0069 |
| 93 | 93 | 0.122 |
| 94 | 94 | 0.0753 |
| 95 | 95 | 0.0275 |
| 96 | 96 | 0.426 |
| 97 | 97 | 0.339 |
| 98 | 98 | 0.43 |
| 99 | 99 | 0.89 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11892
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102586 G-401 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100067 (kidney cell line sample)
0103192 (renal cancer cell line sample)
0102586 (G-401 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)
