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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007899
|DRA_sample_Accession=CAGE@SAMD00005205
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005205
|accession_numbers=CAGE;DRX008006;DRR008878;DRZ000303;DRZ001688;DRZ011653;DRZ013038
|accession_numbers_RNASeq=RNA-Seq;DRX057147;DRR062906;DRZ007982
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:31832862..31832884,-!p2@PAX6!2.15!140.33!PAX6;;chr20:56100179..56100208,-!p1@CTCFL!2.09!123.32!CTCFL;;chr11:31832807..31832823,-!p4@PAX6!1.86!71.71!PAX6;;chr11:31839488..31839515,-!p3@PAX6!1.76!57.20!PAX6;;chr11:31832658..31832681,-!p1@PAX6!1.75!55.77!PAX6;;chr12:85673868..85673881,+!p2@ALX1!1.73!53.16!ALX1;;chr5:50679228..50679288,+!p1@ISL1!1.64!42.81!ISL1;;chr11:31832687..31832704,-!p6@PAX6!1.59!37.58!PAX6;;chr11:31832610..31832639,-!p5@PAX6!1.50!30.44!PAX6;;chr11:31832581..31832601,-!p7@PAX6!1.48!29.14!PAX6;;chr2:73520667..73520683,-!p1@EGR4!1.42!25.45!EGR4;;chr15:57511609..57511651,+!p2@TCF12!1.37!36.87!TCF12;;chr15:96874244..96874259,+!p5@NR2F2!1.35!50.42!NR2F2;;chr15:96874145..96874166,+!p7@NR2F2!1.34!39.48!NR2F2;;chr8:60031682..60031710,-!p2@TOX!1.34!33.42!TOX;;chr15:96874216..96874236,+!p13@NR2F2!1.32!30.32!NR2F2;;chr8:60031762..60031803,-!p3@TOX!1.30!27.47!TOX;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.30!19.15!PEG3;;chrX:84498989..84499003,+!p1@ZNF711!1.29!24.97!ZNF711;;chr15:96873984..96873999,+!p3@NR2F2!1.28!130.46!NR2F2;;chr6:122720681..122720713,+!p3@HSF2!1.27!21.64!HSF2;;chr19:22817119..22817145,+!p1@ZNF492!1.26!28.30!ZNF492;;chr20:50721803..50721857,-!p2@ZFP64!1.26!26.88!ZFP64;;chr6:10415484..10415508,-!p3@TFAP2A!1.26!17.12!TFAP2A;;chr5:92918919..92918942,+!p1@NR2F1!1.25!74.33!NR2F1;;chr2:45168834..45168847,+!p2@SIX3!1.25!16.89!SIX3;;chr19:22605136..22605154,-!p1@ZNF98!1.23!15.82!ZNF98;;chr6:10415276..10415341,-!p2@TFAP2A!1.22!18.91!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.20!24.85!TFAP2A;;chr2:45168875..45168916,+!p1@SIX3!1.20!14.75!SIX3;;chr1:47881953..47881958,+!p1@FOXE3!1.20!14.75!FOXE3;;chr19:45971246..45971265,+!p1@FOSB!1.19!265.43!FOSB;;chr5:92919100..92919135,+!p3@NR2F1!1.19!17.72!NR2F1;;chr15:96874012..96874042,+!p2@NR2F2!1.18!124.87!NR2F2;;chr8:60031809..60031835,-!p4@TOX!1.18!17.84!TOX;;chr7:27183291..27183324,-!p1@HOXA5!1.17!13.79!HOXA5;;chr6:19837592..19837621,+!p1@ID4!1.16!82.53!ID4;;chr5:137804484..137804498,+!p2@EGR1!1.16!53.51!EGR1;;chr17:59477233..59477263,+!p1@TBX2!1.15!40.91!TBX2;;chr5:137801160..137801176,+!p1@EGR1!1.14!1249.73!EGR1;;chr5:92919375..92919438,+!p6@NR2F1!1.14!14.03!NR2F1;;chr7:27183263..27183284,-!p2@HOXA5!1.14!12.72!HOXA5;;chr6:10412392..10412409,-!p4@TFAP2A!1.13!14.15!TFAP2A;;chrX:101186981..101187030,-!p1@ZMAT1!1.12!39.84!ZMAT1;;chr7:27205136..27205164,-!p1@HOXA9!1.12!12.13!HOXA9;;chr11:31832549..31832562,-!p10@PAX6!1.11!12.01!PAX6;;chr11:31833736..31833778,-!p13@PAX6!1.11!12.01!PAX6;;chr22:19748231..19748317,+!p1@TBX1!1.11!12.01!TBX1;;chr12:85673977..85674015,+!p1@ALX1!1.11!11.89!ALX1;;chr2:200323414..200323455,-!p1@SATB2!1.09!24.26!SATB2;;chr11:31832207..31832226,-!p12@PAX6!1.09!11.30!PAX6;;chr7:63505799..63505904,+!p1@ZNF727!1.08!10.94!ZNF727;;chr15:37392724..37392757,-!p1@MEIS2!1.07!49.83!MEIS2;;chr7:27196267..27196311,-!p1@HOXA7!1.05!10.35!HOXA7;;chr4:174451370..174451387,-!p1@HAND2!1.05!10.23!HAND2;;chr19:57352109..57352153,-!p2@ZIM2!1.04!9.99!ZIM2;;chr17:46806067..46806097,-!p1@HOXB13!1.04!9.87!HOXB13;;chr4:299227..299272,-!p1@ZNF732!1.02!9.51!ZNF732;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.51!IRX2;;chr2:45169143..45169167,+!p5@SIX3!1.02!9.39!SIX3;;chr7:27192185..27192209,-!p1@HOXA3!0.99!8.68!HOXA3;;chr13:72441074..72441172,-!p2@DACH1!0.97!8.32!DACH1;;chr7:27135591..27135658,-!p1@HOXA1!0.96!16.05!HOXA1;;chr5:92918956..92918969,+!p4@NR2F1!0.96!8.92!NR2F1;;chr14:75745523..75745537,+!p1@FOS!0.95!978.36!FOS;;chr13:72441315..72441454,-!p1@DACH1!0.95!16.17!DACH1;;chr15:96876966..96877017,+!p12@NR2F2!0.95!11.54!NR2F2;;chr11:31832539..31832548,-!p16@PAX6!0.95!7.97!PAX6;;chr12:85674018..85674039,+!p3@ALX1!0.95!7.97!ALX1;;chr9:96717629..96717644,-!p1@BARX1!0.95!7.97!BARX1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.95!7.97!ZSCAN1;;chr15:96874063..96874074,+!p10@NR2F2!0.94!14.39!NR2F2;;chr3:21792682..21792720,-!p1@ZNF385D!0.94!7.73!ZNF385D;;chr15:96873921..96873946,+!p1@NR2F2!0.93!220.36!NR2F2;;chr11:31832461..31832468,-!p20@PAX6!0.93!7.49!PAX6;;chr4:8873545..8873583,-!p1@HMX1!0.93!7.49!HMX1;;chr2:71127699..71127744,+!p1@VAX2!0.92!15.58!VAX2;;chr8:60031934..60031986,-!p6@TOX!0.92!7.37!TOX;;chr7:27153454..27153469,-!p2@HOXA3!0.92!7.25!HOXA3;;chr17:46806098..46806118,-!p3@HOXB13!0.92!7.25!HOXB13;;chr4:4861385..4861398,+!p1@MSX1!0.91!21.76!MSX1;;chr5:150284532..150284549,-!p1@ZNF300!0.91!15.34!ZNF300;;chr2:200322259..200322280,-!p5@SATB2!0.90!6.90!SATB2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.89!6.78!HOXC5;;chr12:66218183..66218209,+!p4@HMGA2!0.88!13.20!HMGA2;;chr19:58545369..58545404,+!p2@ZSCAN1!0.88!6.66!ZSCAN1;;chr1:197886461..197886558,+!p1@LHX9!0.88!6.66!LHX9;;chr20:50722573..50722580,-!p18@ZFP64!0.88!6.66!ZFP64;;chr20:50418947..50418964,-!p4@SALL4!0.88!6.54!SALL4;;chrX:101187036..101187056,-!p2@ZMAT1!0.87!7.14!ZMAT1;;chr20:50721883..50721896,-!p11@ZFP64!0.87!6.42!ZFP64;;chr6:122720718..122720731,+!p4@HSF2!0.87!6.42!HSF2;;chr12:66218152..66218174,+!p10@HMGA2!0.86!6.78!HMGA2;;chr8:60031840..60031869,-!p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Line 39: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aDMS%2520144.CNhs12808.10841-111E4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aDMS%2520144.CNhs12808.10841-111E4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aDMS%2520144.CNhs12808.10841-111E4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aDMS%2520144.CNhs12808.10841-111E4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aDMS%2520144.CNhs12808.10841-111E4.hg38.nobarcode.ctss.bed.gz
|id=FF:10841-111E4
|id=FF:10841-111E4
|is_a=EFO:0002091;;FF:0000210;;FF:0100189;;FF:0102206
|is_a=EFO:0002091;;FF:0000210;;FF:0100189;;FF:0102206
|is_obsolete=
|is_obsolete=
|library_ids=CNhs12808
|library_id=CNhs12808
|library_id_phase_based=2:CNhs12808
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10841
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10841
|name=small cell lung carcinoma cell line:DMS 144
|name=small cell lung carcinoma cell line:DMS 144
|namespace=FANTOM5
|namespace=FANTOM5
Line 48: Line 62:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12808,LSID972,release012,COMPLETED
|profile_hcage=CNhs12808,LSID972,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 62: Line 77:
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|sample_category=cell lines
Line 87: Line 103:
|top_motifs=NRF1:2.0144704726;YY1:1.97750521856;HOX{A6,A7,B6,B7}:1.95481266797;RFX1:1.69218433491;VSX1,2:1.66480516058;POU1F1:1.45200431006;PBX1:1.44419219657;GFI1:1.44051605217;EVI1:1.3754525115;ZNF143:1.31317879397;FOXM1:1.29363586362;RBPJ:1.26707810154;SOX17:1.24430777317;ELK1,4_GABP{A,B1}:1.19493756655;HOX{A5,B5}:1.16601077422;NFY{A,B,C}:1.15135990952;TFDP1:1.13309921466;E2F1..5:1.09345961401;STAT1,3:1.0863317733;CRX:1.07422801889;CDX1,2,4:1.05939080281;CDC5L:1.03148973466;TEF:0.974767408332;NKX6-1,2:0.971053223014;ALX1:0.934808850352;BREu{core}:0.925945662535;DBP:0.9039628844;ZBTB16:0.829369528572;STAT5{A,B}:0.822081314748;ARID5B:0.752188200067;MYB:0.748612866461;GZF1:0.747640005459;RFX2..5_RFXANK_RFXAP:0.74229690385;ONECUT1,2:0.74047114388;POU6F1:0.727621361919;PAX1,9:0.727084663687;FOXN1:0.725490515674;PITX1..3:0.700116913047;SREBF1,2:0.698522384571;PATZ1:0.639622089391;SOX{8,9,10}:0.617932116698;HBP1_HMGB_SSRP1_UBTF:0.5582515156;LEF1_TCF7_TCF7L1,2:0.550105935011;PRRX1,2:0.516864126047;FOXA2:0.484170149171;POU2F1..3:0.482111631806;HOXA9_MEIS1:0.440592618692;AIRE:0.436532584593;NKX2-1,4:0.431526522432;PAX8:0.429985102661;IKZF2:0.393119136044;FOXP1:0.384444140998;RXR{A,B,G}:0.384443936396;NANOG:0.378835176176;HSF1,2:0.374384407986;HIC1:0.362928141649;NKX2-3_NKX2-5:0.335327981322;ATF5_CREB3:0.321181570149;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.300938487108;MZF1:0.291336070634;FOXL1:0.267436347188;OCT4_SOX2{dimer}:0.266955686379;SOX5:0.255866107191;GFI1B:0.250046340532;T:0.244810592977;CUX2:0.22795584317;bHLH_family:0.221327554965;REST:0.210755651;PAX4:0.183624896758;ATF4:0.183203768899;PAX6:0.182014832723;GATA6:0.18124084265;BPTF:0.172343296747;UFEwm:0.165789831189;CREB1:0.140204272467;ATF2:0.127720268278;HOX{A4,D4}:0.120892861879;PPARG:0.0856361840436;ZFP161:0.0609489683005;ZBTB6:0.0581783326792;HIF1A:0.0499985253443;FOX{I1,J2}:0.0262628116803;POU3F1..4:0.00180230132758;FOXQ1:-0.00301838424816;FOXP3:-0.00722991182561;EGR1..3:-0.0198772067583;NANOG{mouse}:-0.0245884132258;RORA:-0.0332403786675;NR5A1,2:-0.0421836744739;HNF1A:-0.0570790668372;NR6A1:-0.0588520662602;AHR_ARNT_ARNT2:-0.0734312157645;TFAP2B:-0.0750060556817;ADNP_IRX_SIX_ZHX:-0.0776520858715;FOXD3:-0.0792952870542;NR3C1:-0.0972463592204;RREB1:-0.12094183396;ESRRA:-0.132068543168;ZNF384:-0.134451203698;MED-1{core}:-0.141937576139;SRF:-0.143830675085;ZIC1..3:-0.149968690316;NHLH1,2:-0.167161146662;HNF4A_NR2F1,2:-0.186142927626;RUNX1..3:-0.211476418027;LHX3,4:-0.2248217115;MYBL2:-0.239709037639;TGIF1:-0.272329858537;MEF2{A,B,C,D}:-0.282471563147;AR:-0.314395728723;FOX{D1,D2}:-0.329189890714;ATF6:-0.331171906304;ZNF423:-0.336401685349;TAL1_TCF{3,4,12}:-0.339815472445;JUN:-0.341716623754;TOPORS:-0.343562685999;SNAI1..3:-0.344854972599;HMGA1,2:-0.350030604267;TEAD1:-0.352298444598;NKX3-1:-0.360817309806;TLX1..3_NFIC{dimer}:-0.371379780743;TLX2:-0.379302893953;GTF2A1,2:-0.379853602648;SP1:-0.39666591819;EN1,2:-0.407213148389;POU5F1:-0.428444470092;TBX4,5:-0.428724194948;TP53:-0.441283321336;PAX3,7:-0.453286209389;HAND1,2:-0.454935673805;ZEB1:-0.457625236167;MTE{core}:-0.46670798326;PDX1:-0.469837346859;HLF:-0.472692062017;ALX4:-0.484685761111;FOS_FOS{B,L1}_JUN{B,D}:-0.510023101899;GTF2I:-0.5162186805;ZNF148:-0.527569613043;FOX{F1,F2,J1}:-0.529566719702;NKX3-2:-0.544135952294;MTF1:-0.544462292449;NKX2-2,8:-0.552474221729;ESR1:-0.574854582968;IKZF1:-0.576489309092;NFE2:-0.583346566142;NFKB1_REL_RELA:-0.588845501911;PRDM1:-0.608161966006;DMAP1_NCOR{1,2}_SMARC:-0.621466180254;BACH2:-0.626262869403;TBP:-0.630187597645;GATA4:-0.654410398383;NFIX:-0.659984598846;SPI1:-0.678248316105;FOSL2:-0.685792177081;MYOD1:-0.688956314911;LMO2:-0.692660283147;SPIB:-0.703513552648;NFE2L1:-0.729439179379;NFE2L2:-0.730709767591;KLF4:-0.738215568365;XBP1:-0.778272699902;XCPE1{core}:-0.796175144702;MYFfamily:-0.817372020753;PAX5:-0.839593557742;PAX2:-0.871380483752;NFIL3:-0.871426756758;CEBPA,B_DDIT3:-0.874828251322;EBF1:-0.875581031381;ETS1,2:-0.930461454923;HES1:-0.945981183675;FOXO1,3,4:-0.955758738147;SOX2:-0.962508103999;ELF1,2,4:-1.01012558211;NR1H4:-1.01514682915;IRF7:-1.02738050715;ZNF238:-1.06758698861;SMAD1..7,9:-1.08112496282;IRF1,2:-1.12321837037;RXRA_VDR{dimer}:-1.12465869753;TFAP2{A,C}:-1.26566575211;SPZ1:-1.30177305569;NFATC1..3:-1.3201769925;MAFB:-1.41495513476;STAT2,4,6:-1.4336660991;MAZ:-1.46612129134;GCM1,2:-1.49422905813;TFAP4:-1.56539571582;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.5744831364;TFCP2:-1.59109174721;HMX1:-1.6015745567;EP300:-1.73198641127;GLI1..3:-1.90611213033
|top_motifs=NRF1:2.0144704726;YY1:1.97750521856;HOX{A6,A7,B6,B7}:1.95481266797;RFX1:1.69218433491;VSX1,2:1.66480516058;POU1F1:1.45200431006;PBX1:1.44419219657;GFI1:1.44051605217;EVI1:1.3754525115;ZNF143:1.31317879397;FOXM1:1.29363586362;RBPJ:1.26707810154;SOX17:1.24430777317;ELK1,4_GABP{A,B1}:1.19493756655;HOX{A5,B5}:1.16601077422;NFY{A,B,C}:1.15135990952;TFDP1:1.13309921466;E2F1..5:1.09345961401;STAT1,3:1.0863317733;CRX:1.07422801889;CDX1,2,4:1.05939080281;CDC5L:1.03148973466;TEF:0.974767408332;NKX6-1,2:0.971053223014;ALX1:0.934808850352;BREu{core}:0.925945662535;DBP:0.9039628844;ZBTB16:0.829369528572;STAT5{A,B}:0.822081314748;ARID5B:0.752188200067;MYB:0.748612866461;GZF1:0.747640005459;RFX2..5_RFXANK_RFXAP:0.74229690385;ONECUT1,2:0.74047114388;POU6F1:0.727621361919;PAX1,9:0.727084663687;FOXN1:0.725490515674;PITX1..3:0.700116913047;SREBF1,2:0.698522384571;PATZ1:0.639622089391;SOX{8,9,10}:0.617932116698;HBP1_HMGB_SSRP1_UBTF:0.5582515156;LEF1_TCF7_TCF7L1,2:0.550105935011;PRRX1,2:0.516864126047;FOXA2:0.484170149171;POU2F1..3:0.482111631806;HOXA9_MEIS1:0.440592618692;AIRE:0.436532584593;NKX2-1,4:0.431526522432;PAX8:0.429985102661;IKZF2:0.393119136044;FOXP1:0.384444140998;RXR{A,B,G}:0.384443936396;NANOG:0.378835176176;HSF1,2:0.374384407986;HIC1:0.362928141649;NKX2-3_NKX2-5:0.335327981322;ATF5_CREB3:0.321181570149;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.300938487108;MZF1:0.291336070634;FOXL1:0.267436347188;OCT4_SOX2{dimer}:0.266955686379;SOX5:0.255866107191;GFI1B:0.250046340532;T:0.244810592977;CUX2:0.22795584317;bHLH_family:0.221327554965;REST:0.210755651;PAX4:0.183624896758;ATF4:0.183203768899;PAX6:0.182014832723;GATA6:0.18124084265;BPTF:0.172343296747;UFEwm:0.165789831189;CREB1:0.140204272467;ATF2:0.127720268278;HOX{A4,D4}:0.120892861879;PPARG:0.0856361840436;ZFP161:0.0609489683005;ZBTB6:0.0581783326792;HIF1A:0.0499985253443;FOX{I1,J2}:0.0262628116803;POU3F1..4:0.00180230132758;FOXQ1:-0.00301838424816;FOXP3:-0.00722991182561;EGR1..3:-0.0198772067583;NANOG{mouse}:-0.0245884132258;RORA:-0.0332403786675;NR5A1,2:-0.0421836744739;HNF1A:-0.0570790668372;NR6A1:-0.0588520662602;AHR_ARNT_ARNT2:-0.0734312157645;TFAP2B:-0.0750060556817;ADNP_IRX_SIX_ZHX:-0.0776520858715;FOXD3:-0.0792952870542;NR3C1:-0.0972463592204;RREB1:-0.12094183396;ESRRA:-0.132068543168;ZNF384:-0.134451203698;MED-1{core}:-0.141937576139;SRF:-0.143830675085;ZIC1..3:-0.149968690316;NHLH1,2:-0.167161146662;HNF4A_NR2F1,2:-0.186142927626;RUNX1..3:-0.211476418027;LHX3,4:-0.2248217115;MYBL2:-0.239709037639;TGIF1:-0.272329858537;MEF2{A,B,C,D}:-0.282471563147;AR:-0.314395728723;FOX{D1,D2}:-0.329189890714;ATF6:-0.331171906304;ZNF423:-0.336401685349;TAL1_TCF{3,4,12}:-0.339815472445;JUN:-0.341716623754;TOPORS:-0.343562685999;SNAI1..3:-0.344854972599;HMGA1,2:-0.350030604267;TEAD1:-0.352298444598;NKX3-1:-0.360817309806;TLX1..3_NFIC{dimer}:-0.371379780743;TLX2:-0.379302893953;GTF2A1,2:-0.379853602648;SP1:-0.39666591819;EN1,2:-0.407213148389;POU5F1:-0.428444470092;TBX4,5:-0.428724194948;TP53:-0.441283321336;PAX3,7:-0.453286209389;HAND1,2:-0.454935673805;ZEB1:-0.457625236167;MTE{core}:-0.46670798326;PDX1:-0.469837346859;HLF:-0.472692062017;ALX4:-0.484685761111;FOS_FOS{B,L1}_JUN{B,D}:-0.510023101899;GTF2I:-0.5162186805;ZNF148:-0.527569613043;FOX{F1,F2,J1}:-0.529566719702;NKX3-2:-0.544135952294;MTF1:-0.544462292449;NKX2-2,8:-0.552474221729;ESR1:-0.574854582968;IKZF1:-0.576489309092;NFE2:-0.583346566142;NFKB1_REL_RELA:-0.588845501911;PRDM1:-0.608161966006;DMAP1_NCOR{1,2}_SMARC:-0.621466180254;BACH2:-0.626262869403;TBP:-0.630187597645;GATA4:-0.654410398383;NFIX:-0.659984598846;SPI1:-0.678248316105;FOSL2:-0.685792177081;MYOD1:-0.688956314911;LMO2:-0.692660283147;SPIB:-0.703513552648;NFE2L1:-0.729439179379;NFE2L2:-0.730709767591;KLF4:-0.738215568365;XBP1:-0.778272699902;XCPE1{core}:-0.796175144702;MYFfamily:-0.817372020753;PAX5:-0.839593557742;PAX2:-0.871380483752;NFIL3:-0.871426756758;CEBPA,B_DDIT3:-0.874828251322;EBF1:-0.875581031381;ETS1,2:-0.930461454923;HES1:-0.945981183675;FOXO1,3,4:-0.955758738147;SOX2:-0.962508103999;ELF1,2,4:-1.01012558211;NR1H4:-1.01514682915;IRF7:-1.02738050715;ZNF238:-1.06758698861;SMAD1..7,9:-1.08112496282;IRF1,2:-1.12321837037;RXRA_VDR{dimer}:-1.12465869753;TFAP2{A,C}:-1.26566575211;SPZ1:-1.30177305569;NFATC1..3:-1.3201769925;MAFB:-1.41495513476;STAT2,4,6:-1.4336660991;MAZ:-1.46612129134;GCM1,2:-1.49422905813;TFAP4:-1.56539571582;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.5744831364;TFCP2:-1.59109174721;HMX1:-1.6015745567;EP300:-1.73198641127;GLI1..3:-1.90611213033
|xref=
|xref=
}} {{DRAAccessionNumbers
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10841-111E4;search_select_hide=table117:FF:10841-111E4
|DRA_sample_Accession=CAGE@DRS007899
|accession_numbers=DRX008006;DRR008878;DRZ000303;DRZ001688;CAGE
|library_id=CNhs12808
}}
}}

Latest revision as of 15:09, 3 June 2020

Name:small cell lung carcinoma cell line:DMS 144
Species:Human (Homo sapiens)
Library ID:CNhs12808
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexmale
age68
cell typeunclassifiable
cell lineDMS 144
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005205
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12808 CAGE DRX008006 DRR008878
Accession ID Hg19

Library idBAMCTSS
CNhs12808 DRZ000303 DRZ001688
Accession ID Hg38

Library idBAMCTSS
CNhs12808 DRZ011653 DRZ013038
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005205
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10090 RNA-Seq DRX057147 DRR062906
Accession ID Hg19

Library idBAMCTSS
RDhi10090 DRZ007982


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.054
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.353
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00168
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0026
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0.838
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.00225
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0915
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.304
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0471
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0927
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.31
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0469
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.203
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12808

Jaspar motifP-value
MA0002.20.00314
MA0003.10.189
MA0004.10.206
MA0006.10.229
MA0007.10.856
MA0009.10.841
MA0014.10.748
MA0017.10.00299
MA0018.20.128
MA0019.10.651
MA0024.13.09751e-4
MA0025.10.237
MA0027.10.578
MA0028.10.00968
MA0029.10.463
MA0030.10.192
MA0031.10.162
MA0035.20.602
MA0038.10.00261
MA0039.20.433
MA0040.10.4
MA0041.10.0943
MA0042.10.0815
MA0043.10.696
MA0046.10.129
MA0047.20.0982
MA0048.10.175
MA0050.13.14561e-12
MA0051.16.66465e-7
MA0052.10.0468
MA0055.10.0101
MA0057.10.0931
MA0058.10.169
MA0059.10.504
MA0060.14.54166e-14
MA0061.10.0227
MA0062.20.00819
MA0065.20.117
MA0066.10.238
MA0067.10.311
MA0068.10.523
MA0069.10.609
MA0070.10.0193
MA0071.10.915
MA0072.10.953
MA0073.10.43
MA0074.10.247
MA0076.11.39887e-4
MA0077.10.48
MA0078.10.483
MA0079.20.254
MA0080.23.52572e-13
MA0081.10.0344
MA0083.10.479
MA0084.10.978
MA0087.10.734
MA0088.10.0273
MA0090.10.257
MA0091.10.0432
MA0092.10.261
MA0093.10.134
MA0099.22.52898e-21
MA0100.10.1
MA0101.10.0608
MA0102.24.88478e-5
MA0103.10.459
MA0104.20.073
MA0105.10.0518
MA0106.10.515
MA0107.10.0162
MA0108.20.34
MA0111.10.862
MA0112.20.00122
MA0113.10.0234
MA0114.10.12
MA0115.10.904
MA0116.10.0892
MA0117.10.855
MA0119.10.31
MA0122.10.531
MA0124.10.946
MA0125.10.187
MA0131.10.143
MA0135.10.181
MA0136.12.28982e-10
MA0137.20.0308
MA0138.20.476
MA0139.10.159
MA0140.10.964
MA0141.10.279
MA0142.10.973
MA0143.10.75
MA0144.15.80317e-4
MA0145.10.109
MA0146.10.379
MA0147.10.082
MA0148.10.068
MA0149.10.909
MA0150.13.39755e-5
MA0152.10.787
MA0153.10.0978
MA0154.10.0256
MA0155.10.296
MA0156.10.00131
MA0157.10.397
MA0159.10.0552
MA0160.10.278
MA0162.10.224
MA0163.10.0861
MA0164.10.666
MA0258.10.0172
MA0259.10.0472



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12808

Novel motifP-value
10.827
100.888
1000.322
1010.848
1020.472
1030.231
1040.577
1050.279
1066.70058e-7
1070.00169
1080.57
1090.57
110.481
1100.797
1110.784
1120.0396
1130.468
1140.364
1150.685
1160.856
1170.941
1180.994
1190.363
120.728
1200.554
1210.23
1220.641
1230.635
1240.629
1250.00667
1260.137
1270.65
1280.00205
1290.3
130.929
1300.514
1310.0185
1320.248
1330.14
1340.953
1350.0152
1360.457
1370.182
1380.209
1390.0465
140.55
1400.903
1410.571
1420.506
1430.21
1440.688
1450.549
1460.265
1470.553
1480.0157
1490.109
150.559
1500.256
1510.258
1520.0118
1530.237
1540.672
1550.532
1560.976
1570.959
1580.535
1590.265
160.308
1600.442
1610.792
1620.318
1630.31
1640.909
1650.231
1660.262
1670.176
1680.0996
1690.0335
170.155
180.338
190.157
20.0485
200.417
210.575
220.229
231.25933e-4
240.918
250.689
260.321
270.161
280.756
290.377
30.462
300.188
310.722
320.0481
330.969
340.278
350.942
360.583
370.331
380.323
390.195
40.285
400.747
410.129
420.82
430.335
440.661
450.179
460.337
470.802
480.644
490.504
50.219
500.598
510.82
520.0127
530.319
540.359
550.814
560.47
570.911
580.256
590.0393
60.669
600.0026
610.925
620.136
630.317
640.753
650.0419
660.0363
670.426
680.098
690.768
70.72
700.207
710.206
720.218
730.0938
740.528
750.702
760.629
770.114
780.221
790.135
80.79
800.014
810.696
820.404
830.386
840.956
850.00824
860.534
870.948
880.956
890.0314
90.116
900.805
910.0783
920.208
930.935
940.18
950.405
960.459
970.898
980.687
990.72



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12808


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
5409 (lung small cell carcinoma)
3904 (bronchogenic carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102206 (small cell lung cancer cell line sample)
0100189 (small cell lung cancer cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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