FF:10850-111F4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005468 | |||
|accession_numbers=CAGE;DRX007939;DRR008811;DRZ000236;DRZ001621;DRZ011586;DRZ012971 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077 | ||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102424 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0102424 | |fonse_cell_line=FF:0102424 | ||
|fonse_cell_line_closure=FF:0102424 | |fonse_cell_line_closure=FF:0102424 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-25.CNhs13066.10850-111F4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-25.CNhs13066.10850-111F4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-25.CNhs13066.10850-111F4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-25.CNhs13066.10850-111F4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-25.CNhs13066.10850-111F4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10850-111F4 | |id=FF:10850-111F4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102424 | ||
|is_obsolete= | |||
|library_id=CNhs13066 | |||
|library_id_phase_based=2:CNhs13066 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10850 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10850 | |||
|name=mesothelioma cell line:Mero-25 | |name=mesothelioma cell line:Mero-25 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13066,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13066,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.248932825418101,0,-0.0295656390046002,0.36736717936275,0,0,0,0.090256725407311,0,0,0,0,0,0,0,0,0,-0.0526098896545067,0,0,0,0,0,0.15318927588108,0,0,0.276294265725625,0,0,0,0,0,0,0,0,0,0,0.182411394908525,0,0.0037475706972852,0.0530760100330021,0,0,0,0,0,0,0,0.320049602694007,0,0,0,0,0,-0.00403016369841624,0,0.154154810906532,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.205237303686883,0,0,0,0.20108016368723,0.101613400444133,0,0.100713120693921,0,0,-0.0980353512377064,-0.0129036147263267,0,0,0,0,0,0,0.100713120693921,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.100713120693921,0,0,0,-0.0021434264078792,0,0,0.0636402706113196,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0.100713120693921,0.100713120693921,0,0,-0.247178875285564,0.0912056974542625,-0.0227665485358209,0.107632029625665,0.0503565603469605,0,0.198033757054731,0,0,0,0.0951612854668544,0.100713120693921,0.182411394908525,0,0,0,0.0542915279559602,0,-0.0504125515893149,0,0,0,0,0.0317312792631098,0.184198638520886,0,-0.0830523636952475,0.0323688596165527,0,0,0,0,0.155927541536032,0,-0.0201663630998197,-0.0827201683234173,-0.00395384543975141,-0.607307042055542,-0.04680465889238,0,0,0,-0.0698291065443958,-0.304392308761244,0,0,0.208419162074938,-0.080636497866738,0,0,-0.391044581551635,0,-0.492121228113239,-0.062854722410814,0,0.0727038639080312,0,0,0,0,0,0,0,0,0,0,0,-0.00713690647447601,-0.0758414245298318,0.0438713248897633,0.310476040226166,0.587816126919762,0,-0.396009092717932,0,0,0.116384713462726,-0.0184848043357237,-0.0082060502376048,0.269365729842987,0,-0.201676606315992,-0.0199660030204598,0.0620092977809571,0.308167632548122,0.0350095455373863,-0.189981719549847,0,-0.270035084593761,-0.296601759694719,0.0229615363629854,0.0655450814596747,-0.00310021891094741,-0.236923921532891,0.0954233366346722,0,0,0.0232041942146178,0.217706645062593,0,0.100713120693921,-0.238967542327637,-0.01409550008949,-0.109605462977287,0.11737004120119,0.129375218575643,-0.107315826064527,0.177246755072161,-0.457436452896595,-0.047029906412741,-0.0913733110768875,0,0,-0.0182344400607739,-0.0978214944258302,-0.296241237688029,0.0519927485631537,0,-0.38326434111706,0.382975409138819,0,0.032757017397271,0.0203750777405383,0.489670869419293,0,-0.327630058722275,0,0,0,0,0.182411394908525,-0.0787170520152911,-0.176826590708747,-0.05044416664702,0,0.087217590227949,0,0.246298465031602,0,0.0172229716147254,0.10830527861536,0,-0.186310628480633,0,0.0472527394203468,-0.287411013443626,-0.0835139287413322,0.102513680194345,-0.0584468268118252,0.20244981942188,-0.183472166164243,0.390907331835745,-0.478463824564061,0.030450730794665,0.98008746054479,0,-0.326044415614411,0.0120178249628957,0,0.0354858529841665,0.100713120693921,0.145262719225526,0,0.108506217404864,0,-0.428646460450683,-0.0155252658871572,-0.12881333435452,-0.0591099923649823,0,0.0610360055044084,0.484815015631391,0,0.0195827085337152,0,0.251147172149137,-0.150367083334639,-0.288445111008095,0.174307776048364,-0.0886328963322342,0,-0.265171672803574,0,0,-0.150833305129937,-0.134762917070468,0,-0.0097365409379806,-0.0842944286273133,0.0872999153891255,-0.0152579527410131,0.489670869419293,0,-0.0882000030887553,0,0,0.490416958936424,-0.0636048451378017,-0.257117771637214,-0.152613220792835,0.0161340355606824,0.0673073369672735,0,0,0.00488362894334918,0,-0.071161827236271,0,0,0.209601750346661,0,0,0.125573586074569,0,0.0271602638744653,0,0,0,0,0.18133277616071,0,-0.0117357948240728,-0.0381850132182018,-0.103686158067311,0,0.271247123556745,0,0,0,0,0.100713120693921,-0.0532008708647105,0,0,-0.159370695525043,0.11964230124205,0.0593939792321046,0,0,0,0,-0.215723402553475,-0.203236562094724,0,0.0505486884108931,0.100713120693921,0,0,0,-0.0861409897892114,0,0,0,0,0.0429826636402569,0.286722351657104,0,0,0,-0.0258072294526533,0,0,0,0,-0.431251747362484,0,0,0.0595857831980402,0,-0.184354899238247,-0.0815818795468414,0,-0.224454626601162,-0.0139704632336275,0.958777334506608,0,0,0.101318420531532,0,0,-0.224310332707432,0,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0.100713120693921,0,0,0,0,0,-0.445617434655752,0.270441495662909,-0.0640596705171081,0,0,0,0,0,0,-0.0241060230789031,-0.0354777932616335,0,0,0,0,0,0,0,0,0.0860743952407274,0,0,0,0,0,0.154154810906532,0,0.100713120693921,0,0,0.483587186576363,0,0,-0.176649011499593,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.0295656390046002,0,0,0,0,0,0,0,0.312982828713672,0,0.251147172149137,0,0,-0.113884373708977,0,0,0,-0.0040832640952355,0,0.248932825418101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279517430243329,-0.0247755787802223,-0.104796121064385,-0.0255694264402384,0,0,-0.006968517524948,0,0,0,0,0,0,0.0598652734257355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100713120693921,0,0,0,0,0,0,-0.0676146188630243,0,0,0,0,0,0,0,0.15318927588108,0,0,0.124746473728305,0,0,0,0,0,0,-0.132738820543627,0.5245008431228,-0.104058942095085,0,0,0,-0.0040290121354945,0,0,0,0,0.0339357332750196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0526098896545067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0503565603469605,0,0,0,0,0,0,0,0.100713120693921,0.0503565603469605,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102392926639886,0,0,0,-0.112373108963123,0,0,0,0,0,0,0,0,0.100713120693921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00382198855409299,0,0,0,0,0,0,0,0,0.182411394908525,0,0,0,0,0.0524910454548667,0,0.0980347626784977,0,0,0,0,0,0,0,0,0,0,0,0.100713120693921,0,0,0,0,0.224661438760589,0,0,0,0,0.0530760100330021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414208313453328,0,0,0.0679297251899987,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=109.1 | |rna_weight_ug=109.1 | ||
|sample_age=60 | |sample_age=60 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=9100102 | |sample_cell_catalog=9100102 | ||
|sample_cell_line=Mero-25 | |sample_cell_line=Mero-25 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.46117525352748e-274!GO:0043226;organelle;4.688504128271e-233!GO:0043231;intracellular membrane-bound organelle;8.56698179586224e-233!GO:0043227;membrane-bound organelle;1.34740222019383e-232!GO:0043229;intracellular organelle;1.47472605454294e-232!GO:0005737;cytoplasm;6.10744986267622e-167!GO:0044422;organelle part;4.69939910581953e-153!GO:0044446;intracellular organelle part;1.29882933390323e-151!GO:0044444;cytoplasmic part;1.75678602121901e-118!GO:0005634;nucleus;7.921973757011e-118!GO:0044237;cellular metabolic process;3.72156188454999e-110!GO:0032991;macromolecular complex;6.50322948815752e-108!GO:0044238;primary metabolic process;2.26440281373095e-107!GO:0043170;macromolecule metabolic process;4.18006021205934e-107!GO:0030529;ribonucleoprotein complex;2.26956324597362e-100!GO:0044428;nuclear part;2.73782881061864e-89!GO:0003723;RNA binding;1.58334887393039e-87!GO:0043233;organelle lumen;3.82620982164004e-85!GO:0031974;membrane-enclosed lumen;3.82620982164004e-85!GO:0005515;protein binding;3.19195672882412e-73!GO:0043283;biopolymer metabolic process;1.05365693213043e-70!GO:0005739;mitochondrion;3.49082655925453e-69!GO:0010467;gene expression;7.08282741503512e-68!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.00311616584379e-67!GO:0006396;RNA processing;2.10254590719466e-60!GO:0005840;ribosome;3.38670464590166e-59!GO:0006412;translation;9.54496801991392e-56!GO:0031981;nuclear lumen;2.34071264979323e-55!GO:0016043;cellular component organization and biogenesis;3.05108452273646e-53!GO:0043234;protein complex;6.63718916057716e-52!GO:0003735;structural constituent of ribosome;6.79314819322773e-51!GO:0003676;nucleic acid binding;1.47922480890223e-49!GO:0019538;protein metabolic process;6.89961424110351e-49!GO:0044267;cellular protein metabolic process;5.23213614528479e-44!GO:0031090;organelle membrane;5.29208293097091e-44!GO:0033279;ribosomal subunit;2.02892190163827e-43!GO:0044260;cellular macromolecule metabolic process;3.42498439865395e-43!GO:0044249;cellular biosynthetic process;8.38192643713768e-43!GO:0016071;mRNA metabolic process;9.70185633065233e-43!GO:0015031;protein transport;1.16013339217399e-42!GO:0033036;macromolecule localization;2.00874137598308e-42!GO:0044429;mitochondrial part;2.78196521404032e-42!GO:0043228;non-membrane-bound organelle;1.32826789601495e-40!GO:0043232;intracellular non-membrane-bound organelle;1.32826789601495e-40!GO:0009058;biosynthetic process;7.21800597799699e-40!GO:0008380;RNA splicing;7.39487632257317e-40!GO:0006996;organelle organization and biogenesis;8.65422330338864e-40!GO:0009059;macromolecule biosynthetic process;1.0192208809541e-39!GO:0031967;organelle envelope;5.07920093050604e-39!GO:0031975;envelope;6.74753544500003e-39!GO:0045184;establishment of protein localization;9.97694162289342e-39!GO:0008104;protein localization;1.72939631944603e-38!GO:0006397;mRNA processing;3.01210799658445e-37!GO:0006259;DNA metabolic process;5.56921581007452e-37!GO:0016070;RNA metabolic process;6.80182460478022e-37!GO:0046907;intracellular transport;4.62609414310272e-36!GO:0005829;cytosol;9.5343275931753e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.34925610773091e-34!GO:0065003;macromolecular complex assembly;9.40582062547268e-34!GO:0005654;nucleoplasm;9.82845239278436e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.70090729147457e-31!GO:0022607;cellular component assembly;2.75573158352301e-30!GO:0005681;spliceosome;1.19847389234079e-29!GO:0006886;intracellular protein transport;3.07489706046461e-29!GO:0000166;nucleotide binding;8.84414069323239e-28!GO:0005730;nucleolus;1.98599957714754e-26!GO:0044451;nucleoplasm part;3.75175636417853e-26!GO:0005740;mitochondrial envelope;6.68301522684449e-26!GO:0007049;cell cycle;1.07096672570133e-25!GO:0044445;cytosolic part;1.09903460367964e-24!GO:0016462;pyrophosphatase activity;3.84402044162329e-24!GO:0019866;organelle inner membrane;4.35211806787135e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.35125617691718e-24!GO:0017111;nucleoside-triphosphatase activity;5.96803922051899e-24!GO:0031966;mitochondrial membrane;6.01218486299183e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;7.59739241747367e-24!GO:0005743;mitochondrial inner membrane;1.29276880083411e-22!GO:0015935;small ribosomal subunit;1.39388105166655e-22!GO:0051649;establishment of cellular localization;1.61275409157187e-22!GO:0051641;cellular localization;3.11935014973645e-22!GO:0015934;large ribosomal subunit;6.31161387509017e-22!GO:0006119;oxidative phosphorylation;3.49737347907942e-21!GO:0022402;cell cycle process;1.56267953691944e-20!GO:0016874;ligase activity;1.85292242443908e-20!GO:0006974;response to DNA damage stimulus;5.67342969085994e-20!GO:0044455;mitochondrial membrane part;6.89754024507257e-20!GO:0006457;protein folding;2.69128817795144e-19!GO:0005694;chromosome;3.84780055634571e-19!GO:0032553;ribonucleotide binding;6.93526992913198e-19!GO:0032555;purine ribonucleotide binding;6.93526992913198e-19!GO:0031980;mitochondrial lumen;1.01314057755412e-18!GO:0005759;mitochondrial matrix;1.01314057755412e-18!GO:0042254;ribosome biogenesis and assembly;1.36985456576312e-18!GO:0008134;transcription factor binding;1.42996432570841e-18!GO:0017076;purine nucleotide binding;3.92050424256561e-18!GO:0019941;modification-dependent protein catabolic process;3.92050424256561e-18!GO:0043632;modification-dependent macromolecule catabolic process;3.92050424256561e-18!GO:0006512;ubiquitin cycle;5.60468334843354e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;6.71805392997267e-18!GO:0012505;endomembrane system;7.29878562550494e-18!GO:0006511;ubiquitin-dependent protein catabolic process;1.01724361935569e-17!GO:0006281;DNA repair;1.19987035740644e-17!GO:0044257;cellular protein catabolic process;1.77950657314689e-17!GO:0044265;cellular macromolecule catabolic process;2.19196092320888e-17!GO:0044427;chromosomal part;2.54913357595848e-17!GO:0000278;mitotic cell cycle;3.24187916608256e-17!GO:0022618;protein-RNA complex assembly;7.40932478398902e-17!GO:0051276;chromosome organization and biogenesis;1.03478914201352e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.43522981179144e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.97339906407071e-16!GO:0008135;translation factor activity, nucleic acid binding;2.11408281623476e-16!GO:0005761;mitochondrial ribosome;4.47241854875187e-16!GO:0000313;organellar ribosome;4.47241854875187e-16!GO:0043285;biopolymer catabolic process;4.86239194898433e-16!GO:0005524;ATP binding;4.87291150576386e-16!GO:0006605;protein targeting;8.3990697340807e-16!GO:0032559;adenyl ribonucleotide binding;8.72128175028375e-16!GO:0050794;regulation of cellular process;1.06680315358378e-15!GO:0006366;transcription from RNA polymerase II promoter;3.84246434164818e-15!GO:0005746;mitochondrial respiratory chain;6.36998898381464e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.25956762488326e-15!GO:0030554;adenyl nucleotide binding;7.84212378978173e-15!GO:0006399;tRNA metabolic process;7.84212378978173e-15!GO:0016887;ATPase activity;7.9666114339402e-15!GO:0048770;pigment granule;7.97714931832365e-15!GO:0042470;melanosome;7.97714931832365e-15!GO:0042623;ATPase activity, coupled;8.37455016123268e-15!GO:0005783;endoplasmic reticulum;8.79738032812871e-15!GO:0051186;cofactor metabolic process;1.56130292060116e-14!GO:0009057;macromolecule catabolic process;2.16663100062014e-14!GO:0030163;protein catabolic process;2.53030813778423e-14!GO:0051082;unfolded protein binding;2.82733530976724e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;3.14187428184128e-14!GO:0000375;RNA splicing, via transesterification reactions;3.14187428184128e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.14187428184128e-14!GO:0044432;endoplasmic reticulum part;6.99030535837889e-14!GO:0006260;DNA replication;8.25853267692762e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;9.54474607275168e-14!GO:0031965;nuclear membrane;1.23102402704828e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.23157880560662e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.31351658574277e-13!GO:0003954;NADH dehydrogenase activity;1.31351658574277e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.31351658574277e-13!GO:0004386;helicase activity;1.36708377456085e-13!GO:0005635;nuclear envelope;1.41817958825837e-13!GO:0009719;response to endogenous stimulus;1.45861397335375e-13!GO:0044453;nuclear membrane part;1.59998296744447e-13!GO:0065004;protein-DNA complex assembly;1.69805747327722e-13!GO:0022403;cell cycle phase;2.87654071567326e-13!GO:0008026;ATP-dependent helicase activity;3.57639421859423e-13!GO:0012501;programmed cell death;3.60559090499537e-13!GO:0006323;DNA packaging;4.31891149673988e-13!GO:0006915;apoptosis;5.4070481433115e-13!GO:0000087;M phase of mitotic cell cycle;1.03921443746621e-12!GO:0043412;biopolymer modification;1.40816839737365e-12!GO:0005643;nuclear pore;1.45709283348848e-12!GO:0007067;mitosis;1.59324637158266e-12!GO:0006364;rRNA processing;2.10642745938448e-12!GO:0003712;transcription cofactor activity;2.25476195485915e-12!GO:0065002;intracellular protein transport across a membrane;2.5980283139918e-12!GO:0016072;rRNA metabolic process;4.1075082357508e-12!GO:0016604;nuclear body;4.23606877948476e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.68730979660378e-12!GO:0042773;ATP synthesis coupled electron transport;4.68730979660378e-12!GO:0006333;chromatin assembly or disassembly;5.97527653865913e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.35050151443547e-12!GO:0045271;respiratory chain complex I;6.35050151443547e-12!GO:0005747;mitochondrial respiratory chain complex I;6.35050151443547e-12!GO:0044248;cellular catabolic process;7.4786553005734e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.72111251713365e-12!GO:0019222;regulation of metabolic process;1.10440967681428e-11!GO:0006732;coenzyme metabolic process;1.13969672240228e-11!GO:0048193;Golgi vesicle transport;1.14778831840957e-11!GO:0008219;cell death;1.28228990549232e-11!GO:0016265;death;1.28228990549232e-11!GO:0000074;regulation of progression through cell cycle;1.37673680015247e-11!GO:0051726;regulation of cell cycle;1.53831511205788e-11!GO:0005794;Golgi apparatus;1.62131770836061e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.77896635755875e-11!GO:0003743;translation initiation factor activity;2.02892094823177e-11!GO:0050789;regulation of biological process;2.54602475391502e-11!GO:0006913;nucleocytoplasmic transport;2.9309825728385e-11!GO:0000785;chromatin;3.59662764153551e-11!GO:0051301;cell division;3.61566891216141e-11!GO:0051169;nuclear transport;5.86440801991804e-11!GO:0046930;pore complex;6.79293465065931e-11!GO:0006464;protein modification process;7.96663938752009e-11!GO:0006403;RNA localization;8.11065302948989e-11!GO:0050657;nucleic acid transport;8.64956721348528e-11!GO:0051236;establishment of RNA localization;8.64956721348528e-11!GO:0050658;RNA transport;8.64956721348528e-11!GO:0000279;M phase;1.34141211552458e-10!GO:0006413;translational initiation;2.14465501116266e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.35178490339954e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.58473674039331e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.01958069500878e-10!GO:0004812;aminoacyl-tRNA ligase activity;4.01958069500878e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.01958069500878e-10!GO:0006334;nucleosome assembly;5.16399258166675e-10!GO:0005789;endoplasmic reticulum membrane;7.00251637638082e-10!GO:0009259;ribonucleotide metabolic process;9.83812865301366e-10!GO:0016607;nuclear speck;9.93203787042047e-10!GO:0042981;regulation of apoptosis;1.10592751843844e-09!GO:0043067;regulation of programmed cell death;1.12571762945538e-09!GO:0043038;amino acid activation;1.22978281671368e-09!GO:0006418;tRNA aminoacylation for protein translation;1.22978281671368e-09!GO:0043039;tRNA aminoacylation;1.22978281671368e-09!GO:0008639;small protein conjugating enzyme activity;1.29088174153933e-09!GO:0051188;cofactor biosynthetic process;1.438421194159e-09!GO:0043687;post-translational protein modification;1.44894299220417e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.48831380392095e-09!GO:0031497;chromatin assembly;1.7385414816474e-09!GO:0008565;protein transporter activity;1.97277068024444e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.23654592752716e-09!GO:0007005;mitochondrion organization and biogenesis;2.57074580655e-09!GO:0009260;ribonucleotide biosynthetic process;2.98897310163268e-09!GO:0004842;ubiquitin-protein ligase activity;2.98897310163268e-09!GO:0006350;transcription;3.39556781136992e-09!GO:0009055;electron carrier activity;3.47175271046742e-09!GO:0019787;small conjugating protein ligase activity;4.64515979864246e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.9818363438311e-09!GO:0031323;regulation of cellular metabolic process;5.09137779040379e-09!GO:0006163;purine nucleotide metabolic process;5.17157028824304e-09!GO:0006164;purine nucleotide biosynthetic process;6.63376065067611e-09!GO:0016192;vesicle-mediated transport;6.74451629818049e-09!GO:0006446;regulation of translational initiation;6.74451629818049e-09!GO:0051028;mRNA transport;6.8106600710954e-09!GO:0005793;ER-Golgi intermediate compartment;9.655246967874e-09!GO:0017038;protein import;1.12529551026431e-08!GO:0009150;purine ribonucleotide metabolic process;1.38769057455614e-08!GO:0005667;transcription factor complex;1.40798309804156e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.68728921831494e-08!GO:0048523;negative regulation of cellular process;1.75265038630887e-08!GO:0015986;ATP synthesis coupled proton transport;1.76326808314831e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.76326808314831e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.89629225990953e-08!GO:0015630;microtubule cytoskeleton;1.92576418167826e-08!GO:0016881;acid-amino acid ligase activity;2.06884039477931e-08!GO:0006461;protein complex assembly;4.7027165383531e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.91821453878588e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.91821453878588e-08!GO:0009060;aerobic respiration;1.11581590270174e-07!GO:0016568;chromatin modification;1.12951221451615e-07!GO:0016779;nucleotidyltransferase activity;1.1302519412466e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.30692671697248e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.30692671697248e-07!GO:0009108;coenzyme biosynthetic process;1.36729257071602e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.51886649725337e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.91929991233642e-07!GO:0009141;nucleoside triphosphate metabolic process;1.93913665072261e-07!GO:0019829;cation-transporting ATPase activity;2.33070581122432e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.3699227103233e-07!GO:0045333;cellular respiration;2.48565881501831e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.77266468857036e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.77266468857036e-07!GO:0010468;regulation of gene expression;3.0972777042985e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.23647605048797e-07!GO:0006754;ATP biosynthetic process;3.3602686730027e-07!GO:0006753;nucleoside phosphate metabolic process;3.3602686730027e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.89673867559125e-07!GO:0043566;structure-specific DNA binding;4.35835787153893e-07!GO:0032774;RNA biosynthetic process;4.50600487298554e-07!GO:0003924;GTPase activity;4.50600487298554e-07!GO:0048519;negative regulation of biological process;4.92840699646912e-07!GO:0006351;transcription, DNA-dependent;5.81799393507547e-07!GO:0006888;ER to Golgi vesicle-mediated transport;5.98615545654561e-07!GO:0003697;single-stranded DNA binding;6.48858318754977e-07!GO:0003714;transcription corepressor activity;7.38634741017748e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.70364431060819e-07!GO:0006261;DNA-dependent DNA replication;8.0845449519142e-07!GO:0003724;RNA helicase activity;8.8440413874983e-07!GO:0046034;ATP metabolic process;1.04463328189596e-06!GO:0016564;transcription repressor activity;1.06618098131437e-06!GO:0005813;centrosome;1.09019101360513e-06!GO:0003677;DNA binding;1.2698455582565e-06!GO:0032446;protein modification by small protein conjugation;1.47050206718282e-06!GO:0016567;protein ubiquitination;1.64046015562279e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.65499710881261e-06!GO:0051246;regulation of protein metabolic process;1.67557626745151e-06!GO:0008033;tRNA processing;1.6972081931261e-06!GO:0043069;negative regulation of programmed cell death;1.80913839175377e-06!GO:0043623;cellular protein complex assembly;1.83322649129692e-06!GO:0004298;threonine endopeptidase activity;2.19368267525951e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.33273571341651e-06!GO:0016563;transcription activator activity;2.43534415540439e-06!GO:0045259;proton-transporting ATP synthase complex;2.76824455670379e-06!GO:0006916;anti-apoptosis;2.99704748876806e-06!GO:0043066;negative regulation of apoptosis;3.01857136398103e-06!GO:0005815;microtubule organizing center;3.20943526943298e-06!GO:0009117;nucleotide metabolic process;3.29717662868046e-06!GO:0006752;group transfer coenzyme metabolic process;3.47690503976764e-06!GO:0045454;cell redox homeostasis;3.55430482063773e-06!GO:0003899;DNA-directed RNA polymerase activity;4.10192874055548e-06!GO:0006099;tricarboxylic acid cycle;4.48290585013598e-06!GO:0046356;acetyl-CoA catabolic process;4.48290585013598e-06!GO:0006084;acetyl-CoA metabolic process;4.82055462226235e-06!GO:0005788;endoplasmic reticulum lumen;4.87766411946476e-06!GO:0005762;mitochondrial large ribosomal subunit;5.2021663045699e-06!GO:0000315;organellar large ribosomal subunit;5.2021663045699e-06!GO:0005768;endosome;5.24513218579268e-06!GO:0009056;catabolic process;5.30032094255273e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.45125756345027e-06!GO:0006414;translational elongation;5.56512674938002e-06!GO:0003713;transcription coactivator activity;6.14007496674831e-06!GO:0065007;biological regulation;6.33113780159477e-06!GO:0045786;negative regulation of progression through cell cycle;6.68545840239423e-06!GO:0045449;regulation of transcription;6.75350336823757e-06!GO:0000245;spliceosome assembly;6.90668226600726e-06!GO:0051329;interphase of mitotic cell cycle;7.40494988324339e-06!GO:0006626;protein targeting to mitochondrion;8.73669439046806e-06!GO:0051325;interphase;1.10162108108101e-05!GO:0048475;coated membrane;1.10737937039435e-05!GO:0030117;membrane coat;1.10737937039435e-05!GO:0051168;nuclear export;1.20251014647807e-05!GO:0006613;cotranslational protein targeting to membrane;1.20251014647807e-05!GO:0005819;spindle;1.86207044795748e-05!GO:0048522;positive regulation of cellular process;2.2884349030621e-05!GO:0005525;GTP binding;2.39179316003821e-05!GO:0044452;nucleolar part;2.55748955088677e-05!GO:0006839;mitochondrial transport;2.63270180978739e-05!GO:0051170;nuclear import;2.63270180978739e-05!GO:0000151;ubiquitin ligase complex;2.9440066121678e-05!GO:0051427;hormone receptor binding;3.28654938536433e-05!GO:0051187;cofactor catabolic process;3.36921076523653e-05!GO:0030120;vesicle coat;3.36921076523653e-05!GO:0030662;coated vesicle membrane;3.36921076523653e-05!GO:0008186;RNA-dependent ATPase activity;3.48645747076215e-05!GO:0008654;phospholipid biosynthetic process;4.36902744743259e-05!GO:0016740;transferase activity;4.40607852772722e-05!GO:0031324;negative regulation of cellular metabolic process;4.70105599268586e-05!GO:0006606;protein import into nucleus;5.07720574675092e-05!GO:0000314;organellar small ribosomal subunit;5.26450915327527e-05!GO:0005763;mitochondrial small ribosomal subunit;5.26450915327527e-05!GO:0009109;coenzyme catabolic process;5.42642069142051e-05!GO:0019843;rRNA binding;5.71306232972448e-05!GO:0016853;isomerase activity;6.32788650034239e-05!GO:0006355;regulation of transcription, DNA-dependent;6.68624663951896e-05!GO:0016787;hydrolase activity;6.94691028794419e-05!GO:0000786;nucleosome;6.97630246853197e-05!GO:0035257;nuclear hormone receptor binding;6.98887329870327e-05!GO:0043681;protein import into mitochondrion;7.09823791608669e-05!GO:0044431;Golgi apparatus part;9.04367925780623e-05!GO:0043021;ribonucleoprotein binding;9.1850575207318e-05!GO:0006383;transcription from RNA polymerase III promoter;9.71482278066531e-05!GO:0008094;DNA-dependent ATPase activity;9.89343492485718e-05!GO:0006793;phosphorus metabolic process;0.000104259304732457!GO:0006796;phosphate metabolic process;0.000104259304732457!GO:0004004;ATP-dependent RNA helicase activity;0.000108300740517682!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000108414389114399!GO:0005657;replication fork;0.000113761645665256!GO:0000775;chromosome, pericentric region;0.000121859363820917!GO:0006352;transcription initiation;0.000139160559065912!GO:0030880;RNA polymerase complex;0.00014851880222361!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000155967546430196!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000160358099941964!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000164469556012689!GO:0005770;late endosome;0.000169306193276749!GO:0030867;rough endoplasmic reticulum membrane;0.000180726990027822!GO:0032561;guanyl ribonucleotide binding;0.000196534048317182!GO:0019001;guanyl nucleotide binding;0.000196534048317182!GO:0007051;spindle organization and biogenesis;0.000218182424166986!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000221322073379501!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000238567186756806!GO:0033116;ER-Golgi intermediate compartment membrane;0.000242027112011965!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000262719066614802!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000276375994818497!GO:0003682;chromatin binding;0.000321122418727128!GO:0008250;oligosaccharyl transferase complex;0.000345706021025392!GO:0009892;negative regulation of metabolic process;0.000362133960091584!GO:0006612;protein targeting to membrane;0.000373524345612943!GO:0003684;damaged DNA binding;0.00037547414400602!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000394143682361087!GO:0000428;DNA-directed RNA polymerase complex;0.000394143682361087!GO:0007010;cytoskeleton organization and biogenesis;0.000403478581937451!GO:0031988;membrane-bound vesicle;0.00042321630826426!GO:0045941;positive regulation of transcription;0.000424104279027644!GO:0016023;cytoplasmic membrane-bound vesicle;0.00044600456058001!GO:0042802;identical protein binding;0.000479420935882374!GO:0016363;nuclear matrix;0.000484931305069681!GO:0005684;U2-dependent spliceosome;0.000494470870682325!GO:0000049;tRNA binding;0.000505659223633663!GO:0044440;endosomal part;0.000522647379839248!GO:0010008;endosome membrane;0.000522647379839248!GO:0015631;tubulin binding;0.00052412141407134!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000536028443065429!GO:0051052;regulation of DNA metabolic process;0.000566745808983607!GO:0003746;translation elongation factor activity;0.000601021490246558!GO:0009165;nucleotide biosynthetic process;0.000606908064303915!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000617511108304412!GO:0031982;vesicle;0.000683429550736191!GO:0016310;phosphorylation;0.000767099807395417!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000779245472102485!GO:0015399;primary active transmembrane transporter activity;0.000779245472102485!GO:0045893;positive regulation of transcription, DNA-dependent;0.000784679317939686!GO:0005769;early endosome;0.000797801290813291!GO:0046474;glycerophospholipid biosynthetic process;0.000821203015757118!GO:0048471;perinuclear region of cytoplasm;0.000821203015757118!GO:0043065;positive regulation of apoptosis;0.000822503203175736!GO:0005048;signal sequence binding;0.000822503203175736!GO:0005885;Arp2/3 protein complex;0.000822503203175736!GO:0007006;mitochondrial membrane organization and biogenesis;0.000848504183424999!GO:0048487;beta-tubulin binding;0.000858430526929188!GO:0000075;cell cycle checkpoint;0.000863788906074305!GO:0003678;DNA helicase activity;0.000879949285807652!GO:0003702;RNA polymerase II transcription factor activity;0.000887399372861667!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000894160567500918!GO:0031410;cytoplasmic vesicle;0.000974271962747901!GO:0015992;proton transport;0.000975467762041714!GO:0006302;double-strand break repair;0.00101907585739946!GO:0016859;cis-trans isomerase activity;0.00101907585739946!GO:0018196;peptidyl-asparagine modification;0.00102567978379472!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00102567978379472!GO:0043068;positive regulation of programmed cell death;0.00103953188718529!GO:0005905;coated pit;0.00104186925573733!GO:0006818;hydrogen transport;0.00105966214746169!GO:0004527;exonuclease activity;0.00108109615297969!GO:0008632;apoptotic program;0.00109794345193101!GO:0051920;peroxiredoxin activity;0.00110639338990829!GO:0046489;phosphoinositide biosynthetic process;0.00110639338990829!GO:0004576;oligosaccharyl transferase activity;0.00110639338990829!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00110748287480156!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00110920227688156!GO:0016481;negative regulation of transcription;0.0011330776872985!GO:0006401;RNA catabolic process;0.0011356697132668!GO:0006402;mRNA catabolic process;0.00115384324333156!GO:0005798;Golgi-associated vesicle;0.00117930530136422!GO:0006091;generation of precursor metabolites and energy;0.00123417574290148!GO:0048468;cell development;0.00132265121803851!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0013755981185029!GO:0030176;integral to endoplasmic reticulum membrane;0.00140184181572156!GO:0030036;actin cytoskeleton organization and biogenesis;0.00142110046143753!GO:0003729;mRNA binding;0.00143941463830928!GO:0031252;leading edge;0.00148458518799617!GO:0048518;positive regulation of biological process;0.00153579298713774!GO:0005874;microtubule;0.00156697689601047!GO:0015980;energy derivation by oxidation of organic compounds;0.00159789143081449!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00163205957354863!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00163205957354863!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00163205957354863!GO:0006310;DNA recombination;0.00166310293697967!GO:0006405;RNA export from nucleus;0.00170394295923844!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00170494186225427!GO:0000139;Golgi membrane;0.00188702791143787!GO:0051087;chaperone binding;0.00188943559163322!GO:0000059;protein import into nucleus, docking;0.00191205508729244!GO:0016272;prefoldin complex;0.00201827578626854!GO:0043284;biopolymer biosynthetic process;0.00202515878467414!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00206052660252072!GO:0019867;outer membrane;0.00220638927737426!GO:0009451;RNA modification;0.002207775803512!GO:0031968;organelle outer membrane;0.00223144307337981!GO:0051789;response to protein stimulus;0.00234198300388572!GO:0006986;response to unfolded protein;0.00234198300388572!GO:0003711;transcription elongation regulator activity;0.00251891483886808!GO:0048500;signal recognition particle;0.00256621294236169!GO:0003690;double-stranded DNA binding;0.00284704522007229!GO:0016741;transferase activity, transferring one-carbon groups;0.00288806592355806!GO:0006611;protein export from nucleus;0.00294592439793654!GO:0051101;regulation of DNA binding;0.00296410678727652!GO:0005791;rough endoplasmic reticulum;0.00299851680422851!GO:0006891;intra-Golgi vesicle-mediated transport;0.00303975519488768!GO:0032508;DNA duplex unwinding;0.00325028335974154!GO:0032392;DNA geometric change;0.00325028335974154!GO:0008312;7S RNA binding;0.0033222927060511!GO:0006520;amino acid metabolic process;0.00357779683430755!GO:0008168;methyltransferase activity;0.0037397106151091!GO:0019899;enzyme binding;0.0038890529439115!GO:0005741;mitochondrial outer membrane;0.00401853136843221!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00401853136843221!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00401853136843221!GO:0004532;exoribonuclease activity;0.00428546166315064!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00428546166315064!GO:0008139;nuclear localization sequence binding;0.00446876690897724!GO:0016197;endosome transport;0.00456083613484923!GO:0006497;protein amino acid lipidation;0.0045912902473879!GO:0051252;regulation of RNA metabolic process;0.00468984958070679!GO:0000776;kinetochore;0.00489249536542761!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00501243761894707!GO:0016491;oxidoreductase activity;0.0051738157111075!GO:0005758;mitochondrial intermembrane space;0.0052874394127653!GO:0007088;regulation of mitosis;0.00531900868944261!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0053675110990066!GO:0045047;protein targeting to ER;0.0053675110990066!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0054674763665851!GO:0007017;microtubule-based process;0.00549691018446296!GO:0046467;membrane lipid biosynthetic process;0.00557974465695119!GO:0046983;protein dimerization activity;0.00565064963338937!GO:0035258;steroid hormone receptor binding;0.00581106412710499!GO:0000228;nuclear chromosome;0.00582918103962281!GO:0051540;metal cluster binding;0.00596935013580601!GO:0051536;iron-sulfur cluster binding;0.00596935013580601!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00605698464490684!GO:0005669;transcription factor TFIID complex;0.00605739632300561!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00620519319033848!GO:0004674;protein serine/threonine kinase activity;0.00636425393914586!GO:0017166;vinculin binding;0.00648549419392375!GO:0030118;clathrin coat;0.00685677231095632!GO:0008022;protein C-terminus binding;0.00709868558160761!GO:0000123;histone acetyltransferase complex;0.00724696553347445!GO:0006595;polyamine metabolic process;0.00772066915833521!GO:0016251;general RNA polymerase II transcription factor activity;0.00780964980635613!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00795502797542142!GO:0030029;actin filament-based process;0.00806986329356106!GO:0046483;heterocycle metabolic process;0.00806986329356106!GO:0043022;ribosome binding;0.0081255934548771!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00814684445529758!GO:0031970;organelle envelope lumen;0.00842964072596837!GO:0051098;regulation of binding;0.00858416122479793!GO:0000096;sulfur amino acid metabolic process;0.00884253250418501!GO:0030137;COPI-coated vesicle;0.00887890035308099!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00899333427747209!GO:0032200;telomere organization and biogenesis;0.00899333427747209!GO:0000723;telomere maintenance;0.00899333427747209!GO:0007052;mitotic spindle organization and biogenesis;0.00902902784384801!GO:0006268;DNA unwinding during replication;0.00904797637516719!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00909737286000394!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00918289568478791!GO:0042158;lipoprotein biosynthetic process;0.00921904347590994!GO:0008408;3'-5' exonuclease activity;0.00935846313438347!GO:0030663;COPI coated vesicle membrane;0.0093963191625314!GO:0030126;COPI vesicle coat;0.0093963191625314!GO:0042393;histone binding;0.00947459299101263!GO:0031124;mRNA 3'-end processing;0.00964503771548037!GO:0007059;chromosome segregation;0.0097295210348411!GO:0008361;regulation of cell size;0.00982928209723212!GO:0016044;membrane organization and biogenesis;0.00994075088335777!GO:0051539;4 iron, 4 sulfur cluster binding;0.0103749149262089!GO:0005832;chaperonin-containing T-complex;0.0104904181477401!GO:0031072;heat shock protein binding;0.0109397806586462!GO:0006740;NADPH regeneration;0.0111972634852729!GO:0006098;pentose-phosphate shunt;0.0111972634852729!GO:0006778;porphyrin metabolic process;0.0112309470168413!GO:0033013;tetrapyrrole metabolic process;0.0112309470168413!GO:0045892;negative regulation of transcription, DNA-dependent;0.0113262594965122!GO:0006506;GPI anchor biosynthetic process;0.0114060402540734!GO:0001558;regulation of cell growth;0.0115186106305189!GO:0006144;purine base metabolic process;0.0118820290692804!GO:0006650;glycerophospholipid metabolic process;0.0120634378136539!GO:0043492;ATPase activity, coupled to movement of substances;0.0121123482155701!GO:0030384;phosphoinositide metabolic process;0.0122527002218895!GO:0000922;spindle pole;0.0122970006005824!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0129952398377369!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0130096691810343!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0131120127006312!GO:0005773;vacuole;0.0131265700947856!GO:0030521;androgen receptor signaling pathway;0.0131489261260576!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0132606696504266!GO:0006289;nucleotide-excision repair;0.0136686699623976!GO:0006917;induction of apoptosis;0.0138150483918703!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0138763708614941!GO:0051287;NAD binding;0.0139641578630795!GO:0000082;G1/S transition of mitotic cell cycle;0.0140154170400067!GO:0008270;zinc ion binding;0.014298291934036!GO:0000792;heterochromatin;0.0145705622584924!GO:0046966;thyroid hormone receptor binding;0.0146472266105373!GO:0006275;regulation of DNA replication;0.0146506010803531!GO:0044454;nuclear chromosome part;0.0147908360867768!GO:0016584;nucleosome positioning;0.0148398454741621!GO:0007243;protein kinase cascade;0.0149548225584618!GO:0007264;small GTPase mediated signal transduction;0.0149751788908164!GO:0043189;H4/H2A histone acetyltransferase complex;0.015153817177217!GO:0006354;RNA elongation;0.0152115372996301!GO:0008538;proteasome activator activity;0.0152514300514872!GO:0000305;response to oxygen radical;0.0152514300514872!GO:0009112;nucleobase metabolic process;0.0152514300514872!GO:0008637;apoptotic mitochondrial changes;0.0152522881374249!GO:0004518;nuclease activity;0.0152522881374249!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.015466724233718!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0155186041271726!GO:0015002;heme-copper terminal oxidase activity;0.0155186041271726!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0155186041271726!GO:0004129;cytochrome-c oxidase activity;0.0155186041271726!GO:0005862;muscle thin filament tropomyosin;0.0155186041271726!GO:0007021;tubulin folding;0.0156518304353366!GO:0004003;ATP-dependent DNA helicase activity;0.0157016949146436!GO:0043488;regulation of mRNA stability;0.0159327762715236!GO:0043487;regulation of RNA stability;0.0159327762715236!GO:0030132;clathrin coat of coated pit;0.0159327762715236!GO:0022884;macromolecule transmembrane transporter activity;0.0160315445398076!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0160315445398076!GO:0006284;base-excision repair;0.0161313633419363!GO:0016407;acetyltransferase activity;0.0162402511802696!GO:0000178;exosome (RNase complex);0.0164701489786472!GO:0006505;GPI anchor metabolic process;0.016569778686318!GO:0016049;cell growth;0.0166952825693301!GO:0008652;amino acid biosynthetic process;0.0168260527641315!GO:0009303;rRNA transcription;0.0172162211048768!GO:0008320;protein transmembrane transporter activity;0.0172924030628892!GO:0003756;protein disulfide isomerase activity;0.0173009144473708!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0173009144473708!GO:0012502;induction of programmed cell death;0.0175730222498866!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0177509635014523!GO:0000781;chromosome, telomeric region;0.0178394071756778!GO:0007004;telomere maintenance via telomerase;0.0180201616351501!GO:0007346;regulation of progression through mitotic cell cycle;0.0181988365321512!GO:0006360;transcription from RNA polymerase I promoter;0.0182221925351356!GO:0007093;mitotic cell cycle checkpoint;0.0182731367951431!GO:0006378;mRNA polyadenylation;0.0187403773038228!GO:0006400;tRNA modification;0.0187403773038228!GO:0000175;3'-5'-exoribonuclease activity;0.0187403773038228!GO:0008287;protein serine/threonine phosphatase complex;0.0194648532756096!GO:0006779;porphyrin biosynthetic process;0.0198450846311949!GO:0033014;tetrapyrrole biosynthetic process;0.0198450846311949!GO:0030433;ER-associated protein catabolic process;0.0199132985430778!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0199132985430778!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0200314174795646!GO:0045039;protein import into mitochondrial inner membrane;0.0200314174795646!GO:0000209;protein polyubiquitination;0.0200355602616992!GO:0007050;cell cycle arrest;0.0200355602616992!GO:0035267;NuA4 histone acetyltransferase complex;0.0208105734905223!GO:0046822;regulation of nucleocytoplasmic transport;0.0210202119518329!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0212418275736031!GO:0022415;viral reproductive process;0.0212580394038409!GO:0030134;ER to Golgi transport vesicle;0.021282351273286!GO:0043495;protein anchor;0.0213697629592947!GO:0006509;membrane protein ectodomain proteolysis;0.0213697629592947!GO:0033619;membrane protein proteolysis;0.0213697629592947!GO:0030032;lamellipodium biogenesis;0.0216095808715523!GO:0005637;nuclear inner membrane;0.0218757015158039!GO:0006376;mRNA splice site selection;0.0225079567647634!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0225079567647634!GO:0008234;cysteine-type peptidase activity;0.0228054670913512!GO:0006739;NADP metabolic process;0.0231158374793672!GO:0065009;regulation of a molecular function;0.0232448936552291!GO:0046426;negative regulation of JAK-STAT cascade;0.0232716123587687!GO:0042168;heme metabolic process;0.0236533611942991!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0240493194108187!GO:0042770;DNA damage response, signal transduction;0.0252633785938823!GO:0050178;phenylpyruvate tautomerase activity;0.0253511543389503!GO:0005869;dynactin complex;0.025395622531546!GO:0007040;lysosome organization and biogenesis;0.0257661472552133!GO:0001726;ruffle;0.0261573460479995!GO:0043130;ubiquitin binding;0.0261875947107256!GO:0032182;small conjugating protein binding;0.0261875947107256!GO:0043624;cellular protein complex disassembly;0.0277510506161771!GO:0008092;cytoskeletal protein binding;0.0285121583005614!GO:0006007;glucose catabolic process;0.0285121583005614!GO:0030833;regulation of actin filament polymerization;0.0288257669264481!GO:0006338;chromatin remodeling;0.029399604029176!GO:0007030;Golgi organization and biogenesis;0.029888116955488!GO:0046979;TAP2 binding;0.0302760959143684!GO:0046977;TAP binding;0.0302760959143684!GO:0046978;TAP1 binding;0.0302760959143684!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0302760959143684!GO:0050681;androgen receptor binding;0.0308795920175477!GO:0009116;nucleoside metabolic process;0.0310884758006362!GO:0031123;RNA 3'-end processing;0.0311361670111043!GO:0006270;DNA replication initiation;0.0316415274492399!GO:0031570;DNA integrity checkpoint;0.0316578604394857!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0316758694868521!GO:0050662;coenzyme binding;0.0324875723084026!GO:0009893;positive regulation of metabolic process;0.0328857330590511!GO:0031902;late endosome membrane;0.0330886895021949!GO:0000030;mannosyltransferase activity;0.0332547624015751!GO:0031625;ubiquitin protein ligase binding;0.0333243159779846!GO:0030911;TPR domain binding;0.0336298409190823!GO:0005784;translocon complex;0.0343739610956859!GO:0006984;ER-nuclear signaling pathway;0.0348777268719999!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.035186187186975!GO:0051053;negative regulation of DNA metabolic process;0.0355517878369189!GO:0009396;folic acid and derivative biosynthetic process;0.0356438995312425!GO:0019783;small conjugating protein-specific protease activity;0.0360346595054979!GO:0030659;cytoplasmic vesicle membrane;0.0368109205222346!GO:0051128;regulation of cellular component organization and biogenesis;0.037127819688408!GO:0016654;oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor;0.0377708780152244!GO:0050811;GABA receptor binding;0.0382456033368663!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0382456033368663!GO:0008017;microtubule binding;0.0383740677335869!GO:0004680;casein kinase activity;0.0389095822719722!GO:0032507;maintenance of cellular protein localization;0.0394871575039493!GO:0046982;protein heterodimerization activity;0.0395890914801956!GO:0022890;inorganic cation transmembrane transporter activity;0.0400244752153291!GO:0003725;double-stranded RNA binding;0.0401133047142079!GO:0000339;RNA cap binding;0.0401133047142079!GO:0006733;oxidoreduction coenzyme metabolic process;0.0408398186255528!GO:0006220;pyrimidine nucleotide metabolic process;0.0408513482256535!GO:0006082;organic acid metabolic process;0.0414606378071724!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0417398316290587!GO:0010257;NADH dehydrogenase complex assembly;0.0417398316290587!GO:0033108;mitochondrial respiratory chain complex assembly;0.0417398316290587!GO:0008180;signalosome;0.0422577392141151!GO:0005844;polysome;0.0424934460225546!GO:0006783;heme biosynthetic process;0.0424937130549161!GO:0030968;unfolded protein response;0.0425659797128967!GO:0046914;transition metal ion binding;0.0427478800820662!GO:0004843;ubiquitin-specific protease activity;0.0427851626756083!GO:0000790;nuclear chromatin;0.042787900035332!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0428025846107143!GO:0019752;carboxylic acid metabolic process;0.0428263659762022!GO:0044433;cytoplasmic vesicle part;0.0428263659762022!GO:0016311;dephosphorylation;0.0429631105184556!GO:0030127;COPII vesicle coat;0.0431342871362259!GO:0012507;ER to Golgi transport vesicle membrane;0.0431342871362259!GO:0005876;spindle microtubule;0.0441532776503644!GO:0005732;small nucleolar ribonucleoprotein complex;0.0444151886352035!GO:0043596;nuclear replication fork;0.0449799460155342!GO:0000303;response to superoxide;0.0451448989892018!GO:0007033;vacuole organization and biogenesis;0.0455842000935436!GO:0008537;proteasome activator complex;0.0465822329400843!GO:0030503;regulation of cell redox homeostasis;0.0478435196296074!GO:0030119;AP-type membrane coat adaptor complex;0.0482850082138335!GO:0017134;fibroblast growth factor binding;0.0487824883048894!GO:0001836;release of cytochrome c from mitochondria;0.0495811963731395!GO:0031901;early endosome membrane;0.0495963296218249!GO:0046519;sphingoid metabolic process;0.0498324423805937 | |||
|sample_id=10850 | |sample_id=10850 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=mesothelium | |sample_tissue=mesothelium | ||
|top_motifs=NKX3-1:1.99357304368;ELK1,4_GABP{A,B1}:1.96479837922;bHLH_family:1.61149083975;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.43481251279;ZIC1..3:1.2597314202;HIF1A:1.19422523282;ZNF384:1.07528226017;RXR{A,B,G}:1.04392250262;NR6A1:1.00602156915;POU2F1..3:0.852026270251;TFDP1:0.837500324225;CDX1,2,4:0.81629252756;RBPJ:0.774830152419;PBX1:0.763489031288;ATF4:0.742252039551;LMO2:0.73923244063;MYOD1:0.735733809683;ZNF143:0.691999638468;IRF7:0.649148216048;LHX3,4:0.647387125282;E2F1..5:0.642017863654;TEAD1:0.591728818609;POU1F1:0.56450910177;UFEwm:0.558001601906;HOX{A6,A7,B6,B7}:0.5060563769;NFE2L1:0.49400342943;NKX3-2:0.439403394166;CRX:0.42968631129;PAX5:0.402651134121;GTF2A1,2:0.400339209236;STAT5{A,B}:0.395959047847;GCM1,2:0.38657176454;AIRE:0.38486021274;RFX1:0.381501078417;GFI1:0.373019779288;TEF:0.338337096478;HLF:0.333640186693;PPARG:0.326005518294;ONECUT1,2:0.308281193564;ZNF423:0.291900395962;TOPORS:0.285207804865;NRF1:0.275872508221;YY1:0.270601264739;ZEB1:0.264941347285;CREB1:0.24129686448;TFAP2B:0.239311160509;ESRRA:0.222921324475;FOXM1:0.222564707787;CEBPA,B_DDIT3:0.213503573224;NFY{A,B,C}:0.210591696374;RREB1:0.20817025798;IRF1,2:0.196984756249;SRF:0.1801275684;RXRA_VDR{dimer}:0.157174331869;EN1,2:0.152025054003;PAX4:0.136301953863;ZNF148:0.134357276547;SNAI1..3:0.129027988249;ESR1:0.12212049332;HOXA9_MEIS1:0.118298631326;NFE2:0.109988321377;NFKB1_REL_RELA:0.0810003812546;RORA:0.0796752913898;MYB:0.0779632155061;REST:0.0724913722901;XCPE1{core}:0.069043078491;HES1:0.0675778258158;FOXQ1:0.0634884093018;TBX4,5:0.0596226817176;GFI1B:0.056405945227;SOX2:0.0485679986744;HOX{A5,B5}:0.0311849666693;CUX2:0.0302438127355;EBF1:0.0299047832626;AHR_ARNT_ARNT2:0.0289100496534;SOX17:0.0244516857957;ADNP_IRX_SIX_ZHX:0.0194065579615;ELF1,2,4:0.0135454607017;IKZF1:0.012992185398;NFIX:-0.00844796291885;FOS_FOS{B,L1}_JUN{B,D}:-0.0275220821999;TLX1..3_NFIC{dimer}:-0.0343772900531;GLI1..3:-0.0355011688248;BREu{core}:-0.0554750856314;TBP:-0.0672092559906;ALX4:-0.0683797209552;HNF4A_NR2F1,2:-0.0779523433064;MZF1:-0.0787408764036;BACH2:-0.0911364449834;TP53:-0.114275613767;HIC1:-0.120399635056;KLF4:-0.152316661929;JUN:-0.153601565232;EVI1:-0.162692910233;PRRX1,2:-0.175686729676;MAZ:-0.18632372929;SOX{8,9,10}:-0.187994831356;GZF1:-0.199759646882;TFCP2:-0.205098845563;T:-0.215001549798;HAND1,2:-0.222629704128;HMGA1,2:-0.233844054019;ATF5_CREB3:-0.242804847904;PAX6:-0.244555908827;FOXA2:-0.255288808399;ATF2:-0.259743553683;ATF6:-0.276824716025;NR3C1:-0.280209015242;STAT2,4,6:-0.284483533317;PRDM1:-0.289787292622;MTE{core}:-0.299715594041;FOXP3:-0.300279196129;HNF1A:-0.306233787277;NR1H4:-0.307778797769;LEF1_TCF7_TCF7L1,2:-0.312869401529;NANOG:-0.313178257879;ARID5B:-0.319818974349;STAT1,3:-0.321471914529;PATZ1:-0.330056024463;HOX{A4,D4}:-0.348653324292;MAFB:-0.351550714614;GATA6:-0.367591913328;OCT4_SOX2{dimer}:-0.376853968317;SMAD1..7,9:-0.377251775515;DMAP1_NCOR{1,2}_SMARC:-0.3837220226;EGR1..3:-0.396278922728;NKX2-2,8:-0.39655540121;XBP1:-0.397376530377;FOXL1:-0.399980666953;MEF2{A,B,C,D}:-0.404420498031;POU3F1..4:-0.411108796234;TFAP2{A,C}:-0.418935974968;SPIB:-0.428293446417;RUNX1..3:-0.444569865387;FOX{F1,F2,J1}:-0.462128878992;SPI1:-0.463489665414;ETS1,2:-0.478113668456;FOSL2:-0.481678645053;GTF2I:-0.491995479006;TAL1_TCF{3,4,12}:-0.500516908805;PAX8:-0.508637023866;ZBTB6:-0.511175522901;MTF1:-0.525021100489;ALX1:-0.533848832123;AR:-0.544043178215;ZBTB16:-0.570456849336;SOX5:-0.573312175308;NKX6-1,2:-0.577727936341;TFAP4:-0.592761681499;FOX{I1,J2}:-0.593273721343;EP300:-0.602979518156;NFE2L2:-0.610447696974;NANOG{mouse}:-0.64745790271;SPZ1:-0.658749061097;ZFP161:-0.659499565952;MYFfamily:-0.663329989021;PITX1..3:-0.672552285269;PAX1,9:-0.674039536315;NFIL3:-0.688675916139;MED-1{core}:-0.691665182158;NR5A1,2:-0.693117811378;GATA4:-0.734565427099;SP1:-0.739957711123;PAX2:-0.740154828318;NKX2-3_NKX2-5:-0.769656330213;FOXP1:-0.777117960392;RFX2..5_RFXANK_RFXAP:-0.791496884957;POU5F1:-0.81336774992;ZNF238:-0.818725552416;NKX2-1,4:-0.821799035582;MYBL2:-0.831327015147;NFATC1..3:-0.832510072279;FOXN1:-0.862075389672;SREBF1,2:-0.873434225832;IKZF2:-0.887094718157;POU6F1:-0.892133187954;CDC5L:-0.963055279593;HSF1,2:-0.967467325639;HMX1:-0.9776830385;FOXD3:-1.04460640719;PDX1:-1.05380558323;FOX{D1,D2}:-1.09239887899;HBP1_HMGB_SSRP1_UBTF:-1.11699504073;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.16588521937;VSX1,2:-1.17078689575;FOXO1,3,4:-1.17308371853;NHLH1,2:-1.18751201287;PAX3,7:-1.26526255956;TLX2:-1.43622443077;TGIF1:-1.46856978502;BPTF:-1.56300782927;DBP:-1.87858200755 | |top_motifs=NKX3-1:1.99357304368;ELK1,4_GABP{A,B1}:1.96479837922;bHLH_family:1.61149083975;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.43481251279;ZIC1..3:1.2597314202;HIF1A:1.19422523282;ZNF384:1.07528226017;RXR{A,B,G}:1.04392250262;NR6A1:1.00602156915;POU2F1..3:0.852026270251;TFDP1:0.837500324225;CDX1,2,4:0.81629252756;RBPJ:0.774830152419;PBX1:0.763489031288;ATF4:0.742252039551;LMO2:0.73923244063;MYOD1:0.735733809683;ZNF143:0.691999638468;IRF7:0.649148216048;LHX3,4:0.647387125282;E2F1..5:0.642017863654;TEAD1:0.591728818609;POU1F1:0.56450910177;UFEwm:0.558001601906;HOX{A6,A7,B6,B7}:0.5060563769;NFE2L1:0.49400342943;NKX3-2:0.439403394166;CRX:0.42968631129;PAX5:0.402651134121;GTF2A1,2:0.400339209236;STAT5{A,B}:0.395959047847;GCM1,2:0.38657176454;AIRE:0.38486021274;RFX1:0.381501078417;GFI1:0.373019779288;TEF:0.338337096478;HLF:0.333640186693;PPARG:0.326005518294;ONECUT1,2:0.308281193564;ZNF423:0.291900395962;TOPORS:0.285207804865;NRF1:0.275872508221;YY1:0.270601264739;ZEB1:0.264941347285;CREB1:0.24129686448;TFAP2B:0.239311160509;ESRRA:0.222921324475;FOXM1:0.222564707787;CEBPA,B_DDIT3:0.213503573224;NFY{A,B,C}:0.210591696374;RREB1:0.20817025798;IRF1,2:0.196984756249;SRF:0.1801275684;RXRA_VDR{dimer}:0.157174331869;EN1,2:0.152025054003;PAX4:0.136301953863;ZNF148:0.134357276547;SNAI1..3:0.129027988249;ESR1:0.12212049332;HOXA9_MEIS1:0.118298631326;NFE2:0.109988321377;NFKB1_REL_RELA:0.0810003812546;RORA:0.0796752913898;MYB:0.0779632155061;REST:0.0724913722901;XCPE1{core}:0.069043078491;HES1:0.0675778258158;FOXQ1:0.0634884093018;TBX4,5:0.0596226817176;GFI1B:0.056405945227;SOX2:0.0485679986744;HOX{A5,B5}:0.0311849666693;CUX2:0.0302438127355;EBF1:0.0299047832626;AHR_ARNT_ARNT2:0.0289100496534;SOX17:0.0244516857957;ADNP_IRX_SIX_ZHX:0.0194065579615;ELF1,2,4:0.0135454607017;IKZF1:0.012992185398;NFIX:-0.00844796291885;FOS_FOS{B,L1}_JUN{B,D}:-0.0275220821999;TLX1..3_NFIC{dimer}:-0.0343772900531;GLI1..3:-0.0355011688248;BREu{core}:-0.0554750856314;TBP:-0.0672092559906;ALX4:-0.0683797209552;HNF4A_NR2F1,2:-0.0779523433064;MZF1:-0.0787408764036;BACH2:-0.0911364449834;TP53:-0.114275613767;HIC1:-0.120399635056;KLF4:-0.152316661929;JUN:-0.153601565232;EVI1:-0.162692910233;PRRX1,2:-0.175686729676;MAZ:-0.18632372929;SOX{8,9,10}:-0.187994831356;GZF1:-0.199759646882;TFCP2:-0.205098845563;T:-0.215001549798;HAND1,2:-0.222629704128;HMGA1,2:-0.233844054019;ATF5_CREB3:-0.242804847904;PAX6:-0.244555908827;FOXA2:-0.255288808399;ATF2:-0.259743553683;ATF6:-0.276824716025;NR3C1:-0.280209015242;STAT2,4,6:-0.284483533317;PRDM1:-0.289787292622;MTE{core}:-0.299715594041;FOXP3:-0.300279196129;HNF1A:-0.306233787277;NR1H4:-0.307778797769;LEF1_TCF7_TCF7L1,2:-0.312869401529;NANOG:-0.313178257879;ARID5B:-0.319818974349;STAT1,3:-0.321471914529;PATZ1:-0.330056024463;HOX{A4,D4}:-0.348653324292;MAFB:-0.351550714614;GATA6:-0.367591913328;OCT4_SOX2{dimer}:-0.376853968317;SMAD1..7,9:-0.377251775515;DMAP1_NCOR{1,2}_SMARC:-0.3837220226;EGR1..3:-0.396278922728;NKX2-2,8:-0.39655540121;XBP1:-0.397376530377;FOXL1:-0.399980666953;MEF2{A,B,C,D}:-0.404420498031;POU3F1..4:-0.411108796234;TFAP2{A,C}:-0.418935974968;SPIB:-0.428293446417;RUNX1..3:-0.444569865387;FOX{F1,F2,J1}:-0.462128878992;SPI1:-0.463489665414;ETS1,2:-0.478113668456;FOSL2:-0.481678645053;GTF2I:-0.491995479006;TAL1_TCF{3,4,12}:-0.500516908805;PAX8:-0.508637023866;ZBTB6:-0.511175522901;MTF1:-0.525021100489;ALX1:-0.533848832123;AR:-0.544043178215;ZBTB16:-0.570456849336;SOX5:-0.573312175308;NKX6-1,2:-0.577727936341;TFAP4:-0.592761681499;FOX{I1,J2}:-0.593273721343;EP300:-0.602979518156;NFE2L2:-0.610447696974;NANOG{mouse}:-0.64745790271;SPZ1:-0.658749061097;ZFP161:-0.659499565952;MYFfamily:-0.663329989021;PITX1..3:-0.672552285269;PAX1,9:-0.674039536315;NFIL3:-0.688675916139;MED-1{core}:-0.691665182158;NR5A1,2:-0.693117811378;GATA4:-0.734565427099;SP1:-0.739957711123;PAX2:-0.740154828318;NKX2-3_NKX2-5:-0.769656330213;FOXP1:-0.777117960392;RFX2..5_RFXANK_RFXAP:-0.791496884957;POU5F1:-0.81336774992;ZNF238:-0.818725552416;NKX2-1,4:-0.821799035582;MYBL2:-0.831327015147;NFATC1..3:-0.832510072279;FOXN1:-0.862075389672;SREBF1,2:-0.873434225832;IKZF2:-0.887094718157;POU6F1:-0.892133187954;CDC5L:-0.963055279593;HSF1,2:-0.967467325639;HMX1:-0.9776830385;FOXD3:-1.04460640719;PDX1:-1.05380558323;FOX{D1,D2}:-1.09239887899;HBP1_HMGB_SSRP1_UBTF:-1.11699504073;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.16588521937;VSX1,2:-1.17078689575;FOXO1,3,4:-1.17308371853;NHLH1,2:-1.18751201287;PAX3,7:-1.26526255956;TLX2:-1.43622443077;TGIF1:-1.46856978502;BPTF:-1.56300782927;DBP:-1.87858200755 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10850-111F4;search_select_hide=table117:FF:10850-111F4 | |||
}} | }} | ||
Latest revision as of 15:09, 3 June 2020
| Name: | mesothelioma cell line:Mero-25 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13066 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13066
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13066
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.566 |
| 10 | 10 | 0.883 |
| 100 | 100 | 0.047 |
| 101 | 101 | 0.279 |
| 102 | 102 | 0.82 |
| 103 | 103 | 0.989 |
| 104 | 104 | 0.725 |
| 105 | 105 | 0.122 |
| 106 | 106 | 0.259 |
| 107 | 107 | 0.493 |
| 108 | 108 | 0.6 |
| 109 | 109 | 0.15 |
| 11 | 11 | 0.715 |
| 110 | 110 | 0.403 |
| 111 | 111 | 0.988 |
| 112 | 112 | 0.397 |
| 113 | 113 | 0.00315 |
| 114 | 114 | 0.213 |
| 115 | 115 | 0.676 |
| 116 | 116 | 0.908 |
| 117 | 117 | 0.196 |
| 118 | 118 | 0.328 |
| 119 | 119 | 0.699 |
| 12 | 12 | 0.631 |
| 120 | 120 | 0.0311 |
| 121 | 121 | 0.797 |
| 122 | 122 | 0.199 |
| 123 | 123 | 0.0605 |
| 124 | 124 | 0.0193 |
| 125 | 125 | 0.599 |
| 126 | 126 | 0.874 |
| 127 | 127 | 0.468 |
| 128 | 128 | 0.00105 |
| 129 | 129 | 0.137 |
| 13 | 13 | 0.00211 |
| 130 | 130 | 0.909 |
| 131 | 131 | 0.816 |
| 132 | 132 | 0.768 |
| 133 | 133 | 0.677 |
| 134 | 134 | 0.161 |
| 135 | 135 | 0.00415 |
| 136 | 136 | 0.00709 |
| 137 | 137 | 0.0202 |
| 138 | 138 | 0.317 |
| 139 | 139 | 0.0682 |
| 14 | 14 | 0.249 |
| 140 | 140 | 0.302 |
| 141 | 141 | 0.434 |
| 142 | 142 | 0.793 |
| 143 | 143 | 0.149 |
| 144 | 144 | 0.685 |
| 145 | 145 | 0.0776 |
| 146 | 146 | 0.459 |
| 147 | 147 | 0.929 |
| 148 | 148 | 0.0433 |
| 149 | 149 | 0.299 |
| 15 | 15 | 0.726 |
| 150 | 150 | 0.306 |
| 151 | 151 | 0.213 |
| 152 | 152 | 0.00617 |
| 153 | 153 | 0.0798 |
| 154 | 154 | 0.0835 |
| 155 | 155 | 0.945 |
| 156 | 156 | 0.631 |
| 157 | 157 | 0.588 |
| 158 | 158 | 0.296 |
| 159 | 159 | 0.992 |
| 16 | 16 | 0.93 |
| 160 | 160 | 0.541 |
| 161 | 161 | 0.319 |
| 162 | 162 | 0.8 |
| 163 | 163 | 0.934 |
| 164 | 164 | 0.0275 |
| 165 | 165 | 0.15 |
| 166 | 166 | 0.302 |
| 167 | 167 | 0.488 |
| 168 | 168 | 0.092 |
| 169 | 169 | 0.458 |
| 17 | 17 | 0.695 |
| 18 | 18 | 0.25 |
| 19 | 19 | 0.379 |
| 2 | 2 | 0.319 |
| 20 | 20 | 0.117 |
| 21 | 21 | 0.826 |
| 22 | 22 | 0.619 |
| 23 | 23 | 0.0213 |
| 24 | 24 | 0.799 |
| 25 | 25 | 0.424 |
| 26 | 26 | 0.645 |
| 27 | 27 | 0.287 |
| 28 | 28 | 0.809 |
| 29 | 29 | 0.123 |
| 3 | 3 | 0.309 |
| 30 | 30 | 0.485 |
| 31 | 31 | 0.972 |
| 32 | 32 | 0.153 |
| 33 | 33 | 0.159 |
| 34 | 34 | 0.344 |
| 35 | 35 | 0.735 |
| 36 | 36 | 0.515 |
| 37 | 37 | 0.125 |
| 38 | 38 | 0.601 |
| 39 | 39 | 0.661 |
| 4 | 4 | 0.861 |
| 40 | 40 | 0.0149 |
| 41 | 41 | 0.0416 |
| 42 | 42 | 0.762 |
| 43 | 43 | 0.261 |
| 44 | 44 | 0.704 |
| 45 | 45 | 0.537 |
| 46 | 46 | 0.751 |
| 47 | 47 | 0.581 |
| 48 | 48 | 0.629 |
| 49 | 49 | 0.233 |
| 5 | 5 | 0.0272 |
| 50 | 50 | 0.782 |
| 51 | 51 | 0.643 |
| 52 | 52 | 0.129 |
| 53 | 53 | 0.111 |
| 54 | 54 | 0.336 |
| 55 | 55 | 0.0397 |
| 56 | 56 | 0.914 |
| 57 | 57 | 0.765 |
| 58 | 58 | 0.104 |
| 59 | 59 | 0.778 |
| 6 | 6 | 0.305 |
| 60 | 60 | 0.13 |
| 61 | 61 | 0.388 |
| 62 | 62 | 0.0814 |
| 63 | 63 | 0.632 |
| 64 | 64 | 0.914 |
| 65 | 65 | 0.172 |
| 66 | 66 | 0.0884 |
| 67 | 67 | 0.896 |
| 68 | 68 | 0.446 |
| 69 | 69 | 0.945 |
| 7 | 7 | 0.575 |
| 70 | 70 | 0.338 |
| 71 | 71 | 0.83 |
| 72 | 72 | 0.41 |
| 73 | 73 | 0.0101 |
| 74 | 74 | 0.036 |
| 75 | 75 | 0.0511 |
| 76 | 76 | 0.393 |
| 77 | 77 | 0.76 |
| 78 | 78 | 0.717 |
| 79 | 79 | 0.44 |
| 8 | 8 | 0.833 |
| 80 | 80 | 0.0715 |
| 81 | 81 | 0.416 |
| 82 | 82 | 0.115 |
| 83 | 83 | 0.366 |
| 84 | 84 | 0.0899 |
| 85 | 85 | 0.0672 |
| 86 | 86 | 0.928 |
| 87 | 87 | 0.0269 |
| 88 | 88 | 0.85 |
| 89 | 89 | 0.794 |
| 9 | 9 | 0.189 |
| 90 | 90 | 0.00206 |
| 91 | 91 | 0.0175 |
| 92 | 92 | 0.0143 |
| 93 | 93 | 0.559 |
| 94 | 94 | 0.969 |
| 95 | 95 | 0.0417 |
| 96 | 96 | 0.215 |
| 97 | 97 | 0.782 |
| 98 | 98 | 0.374 |
| 99 | 99 | 0.901 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13066
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
