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(Created page with "{{f5samples |id=FF:10850-111F4 |name=mesothelioma cell line:Mero-25, biol_rep1 |sample_id=10850 |rna_tube_id= |rna_box=111 |rna_position=F4 |sample_cell_lot= |sample_c...")
 
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{{f5samples
{{f5samples
|id=FF:10850-111F4
|DRA_sample_Accession=CAGE@SAMD00005468
|name=mesothelioma cell line:Mero-25, biol_rep1
|accession_numbers=CAGE;DRX007939;DRR008811;DRZ000236;DRZ001621;DRZ011586;DRZ012971
|sample_id=10850
|rna_tube_id=
|rna_box=111
|rna_position=F4
|sample_cell_lot=
|sample_cell_catalog=9100102.00000
|sample_company=ECACC
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=mesothelium
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=60
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.98000
|rna_od260/280=2.08000
|sample_cell_type=mesothelial cell
|sample_cell_line=Mero-25
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=mesothelioma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=109.10000
|rna_concentration=1.14800
|sample_note=
|profile_hcage=CNhs13066,LSID1000,,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000077,CL:0000144,CL:0000213,CL:0000215,CL:0000220,CL:0000222,CL:0000255,CL:0000548,CL:0002321
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=DOID:4,DOID:7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
|sample_description=
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566
 
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102424
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|ffid_belonging_in_development=CL:0000222
|fonse_cell_line=FF:0102424
|fonse_cell_line=FF:0102424
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Line 67: Line 40:
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|sample_cell_line=Mero-25
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|sample_cell_type=mesothelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=ECACC
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membrane;5.29208293097091e-44!GO:0033279;ribosomal subunit;2.02892190163827e-43!GO:0044260;cellular macromolecule metabolic process;3.42498439865395e-43!GO:0044249;cellular biosynthetic process;8.38192643713768e-43!GO:0016071;mRNA metabolic process;9.70185633065233e-43!GO:0015031;protein transport;1.16013339217399e-42!GO:0033036;macromolecule localization;2.00874137598308e-42!GO:0044429;mitochondrial part;2.78196521404032e-42!GO:0043228;non-membrane-bound organelle;1.32826789601495e-40!GO:0043232;intracellular non-membrane-bound organelle;1.32826789601495e-40!GO:0009058;biosynthetic process;7.21800597799699e-40!GO:0008380;RNA splicing;7.39487632257317e-40!GO:0006996;organelle organization and biogenesis;8.65422330338864e-40!GO:0009059;macromolecule biosynthetic process;1.0192208809541e-39!GO:0031967;organelle envelope;5.07920093050604e-39!GO:0031975;envelope;6.74753544500003e-39!GO:0045184;establishment of protein localization;9.97694162289342e-39!GO:0008104;protein localization;1.72939631944603e-38!GO:0006397;mRNA processing;3.01210799658445e-37!GO:0006259;DNA metabolic process;5.56921581007452e-37!GO:0016070;RNA metabolic process;6.80182460478022e-37!GO:0046907;intracellular transport;4.62609414310272e-36!GO:0005829;cytosol;9.5343275931753e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.34925610773091e-34!GO:0065003;macromolecular complex assembly;9.40582062547268e-34!GO:0005654;nucleoplasm;9.82845239278436e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.70090729147457e-31!GO:0022607;cellular component assembly;2.75573158352301e-30!GO:0005681;spliceosome;1.19847389234079e-29!GO:0006886;intracellular protein transport;3.07489706046461e-29!GO:0000166;nucleotide binding;8.84414069323239e-28!GO:0005730;nucleolus;1.98599957714754e-26!GO:0044451;nucleoplasm part;3.75175636417853e-26!GO:0005740;mitochondrial envelope;6.68301522684449e-26!GO:0007049;cell cycle;1.07096672570133e-25!GO:0044445;cytosolic part;1.09903460367964e-24!GO:0016462;pyrophosphatase activity;3.84402044162329e-24!GO:0019866;organelle inner membrane;4.35211806787135e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.35125617691718e-24!GO:0017111;nucleoside-triphosphatase activity;5.96803922051899e-24!GO:0031966;mitochondrial membrane;6.01218486299183e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;7.59739241747367e-24!GO:0005743;mitochondrial inner membrane;1.29276880083411e-22!GO:0015935;small ribosomal subunit;1.39388105166655e-22!GO:0051649;establishment of cellular localization;1.61275409157187e-22!GO:0051641;cellular localization;3.11935014973645e-22!GO:0015934;large ribosomal subunit;6.31161387509017e-22!GO:0006119;oxidative phosphorylation;3.49737347907942e-21!GO:0022402;cell cycle process;1.56267953691944e-20!GO:0016874;ligase activity;1.85292242443908e-20!GO:0006974;response to DNA damage stimulus;5.67342969085994e-20!GO:0044455;mitochondrial membrane part;6.89754024507257e-20!GO:0006457;protein folding;2.69128817795144e-19!GO:0005694;chromosome;3.84780055634571e-19!GO:0032553;ribonucleotide binding;6.93526992913198e-19!GO:0032555;purine ribonucleotide binding;6.93526992913198e-19!GO:0031980;mitochondrial lumen;1.01314057755412e-18!GO:0005759;mitochondrial matrix;1.01314057755412e-18!GO:0042254;ribosome biogenesis and assembly;1.36985456576312e-18!GO:0008134;transcription factor binding;1.42996432570841e-18!GO:0017076;purine nucleotide binding;3.92050424256561e-18!GO:0019941;modification-dependent protein catabolic process;3.92050424256561e-18!GO:0043632;modification-dependent macromolecule catabolic process;3.92050424256561e-18!GO:0006512;ubiquitin cycle;5.60468334843354e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;6.71805392997267e-18!GO:0012505;endomembrane system;7.29878562550494e-18!GO:0006511;ubiquitin-dependent protein catabolic process;1.01724361935569e-17!GO:0006281;DNA repair;1.19987035740644e-17!GO:0044257;cellular protein catabolic process;1.77950657314689e-17!GO:0044265;cellular macromolecule catabolic process;2.19196092320888e-17!GO:0044427;chromosomal part;2.54913357595848e-17!GO:0000278;mitotic cell cycle;3.24187916608256e-17!GO:0022618;protein-RNA complex assembly;7.40932478398902e-17!GO:0051276;chromosome organization and biogenesis;1.03478914201352e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.43522981179144e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.97339906407071e-16!GO:0008135;translation factor activity, nucleic acid binding;2.11408281623476e-16!GO:0005761;mitochondrial ribosome;4.47241854875187e-16!GO:0000313;organellar ribosome;4.47241854875187e-16!GO:0043285;biopolymer catabolic process;4.86239194898433e-16!GO:0005524;ATP binding;4.87291150576386e-16!GO:0006605;protein targeting;8.3990697340807e-16!GO:0032559;adenyl ribonucleotide binding;8.72128175028375e-16!GO:0050794;regulation of cellular process;1.06680315358378e-15!GO:0006366;transcription from RNA polymerase II promoter;3.84246434164818e-15!GO:0005746;mitochondrial respiratory chain;6.36998898381464e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.25956762488326e-15!GO:0030554;adenyl nucleotide binding;7.84212378978173e-15!GO:0006399;tRNA metabolic process;7.84212378978173e-15!GO:0016887;ATPase activity;7.9666114339402e-15!GO:0048770;pigment granule;7.97714931832365e-15!GO:0042470;melanosome;7.97714931832365e-15!GO:0042623;ATPase activity, coupled;8.37455016123268e-15!GO:0005783;endoplasmic reticulum;8.79738032812871e-15!GO:0051186;cofactor metabolic process;1.56130292060116e-14!GO:0009057;macromolecule catabolic process;2.16663100062014e-14!GO:0030163;protein catabolic process;2.53030813778423e-14!GO:0051082;unfolded protein binding;2.82733530976724e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;3.14187428184128e-14!GO:0000375;RNA splicing, via transesterification reactions;3.14187428184128e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.14187428184128e-14!GO:0044432;endoplasmic reticulum part;6.99030535837889e-14!GO:0006260;DNA replication;8.25853267692762e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;9.54474607275168e-14!GO:0031965;nuclear membrane;1.23102402704828e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.23157880560662e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.31351658574277e-13!GO:0003954;NADH dehydrogenase activity;1.31351658574277e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.31351658574277e-13!GO:0004386;helicase activity;1.36708377456085e-13!GO:0005635;nuclear envelope;1.41817958825837e-13!GO:0009719;response to endogenous stimulus;1.45861397335375e-13!GO:0044453;nuclear membrane part;1.59998296744447e-13!GO:0065004;protein-DNA complex assembly;1.69805747327722e-13!GO:0022403;cell cycle phase;2.87654071567326e-13!GO:0008026;ATP-dependent helicase activity;3.57639421859423e-13!GO:0012501;programmed cell death;3.60559090499537e-13!GO:0006323;DNA packaging;4.31891149673988e-13!GO:0006915;apoptosis;5.4070481433115e-13!GO:0000087;M phase of mitotic cell cycle;1.03921443746621e-12!GO:0043412;biopolymer modification;1.40816839737365e-12!GO:0005643;nuclear pore;1.45709283348848e-12!GO:0007067;mitosis;1.59324637158266e-12!GO:0006364;rRNA processing;2.10642745938448e-12!GO:0003712;transcription cofactor activity;2.25476195485915e-12!GO:0065002;intracellular protein transport across a membrane;2.5980283139918e-12!GO:0016072;rRNA metabolic process;4.1075082357508e-12!GO:0016604;nuclear body;4.23606877948476e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.68730979660378e-12!GO:0042773;ATP synthesis coupled electron transport;4.68730979660378e-12!GO:0006333;chromatin assembly or disassembly;5.97527653865913e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.35050151443547e-12!GO:0045271;respiratory chain complex I;6.35050151443547e-12!GO:0005747;mitochondrial respiratory chain complex I;6.35050151443547e-12!GO:0044248;cellular catabolic process;7.4786553005734e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.72111251713365e-12!GO:0019222;regulation of metabolic process;1.10440967681428e-11!GO:0006732;coenzyme metabolic process;1.13969672240228e-11!GO:0048193;Golgi vesicle transport;1.14778831840957e-11!GO:0008219;cell death;1.28228990549232e-11!GO:0016265;death;1.28228990549232e-11!GO:0000074;regulation of progression through cell cycle;1.37673680015247e-11!GO:0051726;regulation of cell cycle;1.53831511205788e-11!GO:0005794;Golgi apparatus;1.62131770836061e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.77896635755875e-11!GO:0003743;translation initiation factor activity;2.02892094823177e-11!GO:0050789;regulation of biological process;2.54602475391502e-11!GO:0006913;nucleocytoplasmic transport;2.9309825728385e-11!GO:0000785;chromatin;3.59662764153551e-11!GO:0051301;cell division;3.61566891216141e-11!GO:0051169;nuclear transport;5.86440801991804e-11!GO:0046930;pore complex;6.79293465065931e-11!GO:0006464;protein modification process;7.96663938752009e-11!GO:0006403;RNA localization;8.11065302948989e-11!GO:0050657;nucleic acid transport;8.64956721348528e-11!GO:0051236;establishment of RNA localization;8.64956721348528e-11!GO:0050658;RNA transport;8.64956721348528e-11!GO:0000279;M phase;1.34141211552458e-10!GO:0006413;translational initiation;2.14465501116266e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.35178490339954e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.58473674039331e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.01958069500878e-10!GO:0004812;aminoacyl-tRNA ligase activity;4.01958069500878e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.01958069500878e-10!GO:0006334;nucleosome assembly;5.16399258166675e-10!GO:0005789;endoplasmic reticulum membrane;7.00251637638082e-10!GO:0009259;ribonucleotide metabolic process;9.83812865301366e-10!GO:0016607;nuclear speck;9.93203787042047e-10!GO:0042981;regulation of apoptosis;1.10592751843844e-09!GO:0043067;regulation of programmed cell death;1.12571762945538e-09!GO:0043038;amino acid activation;1.22978281671368e-09!GO:0006418;tRNA aminoacylation for protein translation;1.22978281671368e-09!GO:0043039;tRNA aminoacylation;1.22978281671368e-09!GO:0008639;small protein conjugating enzyme activity;1.29088174153933e-09!GO:0051188;cofactor biosynthetic process;1.438421194159e-09!GO:0043687;post-translational protein modification;1.44894299220417e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.48831380392095e-09!GO:0031497;chromatin assembly;1.7385414816474e-09!GO:0008565;protein transporter activity;1.97277068024444e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.23654592752716e-09!GO:0007005;mitochondrion organization and biogenesis;2.57074580655e-09!GO:0009260;ribonucleotide biosynthetic process;2.98897310163268e-09!GO:0004842;ubiquitin-protein ligase activity;2.98897310163268e-09!GO:0006350;transcription;3.39556781136992e-09!GO:0009055;electron carrier activity;3.47175271046742e-09!GO:0019787;small conjugating protein ligase activity;4.64515979864246e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.9818363438311e-09!GO:0031323;regulation of cellular metabolic process;5.09137779040379e-09!GO:0006163;purine nucleotide metabolic process;5.17157028824304e-09!GO:0006164;purine nucleotide biosynthetic process;6.63376065067611e-09!GO:0016192;vesicle-mediated transport;6.74451629818049e-09!GO:0006446;regulation of translational initiation;6.74451629818049e-09!GO:0051028;mRNA transport;6.8106600710954e-09!GO:0005793;ER-Golgi intermediate compartment;9.655246967874e-09!GO:0017038;protein import;1.12529551026431e-08!GO:0009150;purine ribonucleotide metabolic process;1.38769057455614e-08!GO:0005667;transcription factor complex;1.40798309804156e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.68728921831494e-08!GO:0048523;negative regulation of cellular process;1.75265038630887e-08!GO:0015986;ATP synthesis coupled proton transport;1.76326808314831e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.76326808314831e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.89629225990953e-08!GO:0015630;microtubule cytoskeleton;1.92576418167826e-08!GO:0016881;acid-amino acid ligase activity;2.06884039477931e-08!GO:0006461;protein complex assembly;4.7027165383531e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.91821453878588e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.91821453878588e-08!GO:0009060;aerobic respiration;1.11581590270174e-07!GO:0016568;chromatin modification;1.12951221451615e-07!GO:0016779;nucleotidyltransferase activity;1.1302519412466e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.30692671697248e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.30692671697248e-07!GO:0009108;coenzyme biosynthetic process;1.36729257071602e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.51886649725337e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.91929991233642e-07!GO:0009141;nucleoside triphosphate metabolic process;1.93913665072261e-07!GO:0019829;cation-transporting ATPase activity;2.33070581122432e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.3699227103233e-07!GO:0045333;cellular respiration;2.48565881501831e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.77266468857036e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.77266468857036e-07!GO:0010468;regulation of gene expression;3.0972777042985e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.23647605048797e-07!GO:0006754;ATP biosynthetic process;3.3602686730027e-07!GO:0006753;nucleoside phosphate metabolic process;3.3602686730027e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.89673867559125e-07!GO:0043566;structure-specific DNA binding;4.35835787153893e-07!GO:0032774;RNA biosynthetic process;4.50600487298554e-07!GO:0003924;GTPase activity;4.50600487298554e-07!GO:0048519;negative regulation of biological process;4.92840699646912e-07!GO:0006351;transcription, DNA-dependent;5.81799393507547e-07!GO:0006888;ER to Golgi vesicle-mediated transport;5.98615545654561e-07!GO:0003697;single-stranded DNA binding;6.48858318754977e-07!GO:0003714;transcription corepressor activity;7.38634741017748e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.70364431060819e-07!GO:0006261;DNA-dependent DNA replication;8.0845449519142e-07!GO:0003724;RNA helicase activity;8.8440413874983e-07!GO:0046034;ATP metabolic process;1.04463328189596e-06!GO:0016564;transcription repressor activity;1.06618098131437e-06!GO:0005813;centrosome;1.09019101360513e-06!GO:0003677;DNA binding;1.2698455582565e-06!GO:0032446;protein modification by small protein conjugation;1.47050206718282e-06!GO:0016567;protein ubiquitination;1.64046015562279e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.65499710881261e-06!GO:0051246;regulation of protein metabolic process;1.67557626745151e-06!GO:0008033;tRNA processing;1.6972081931261e-06!GO:0043069;negative regulation of programmed cell death;1.80913839175377e-06!GO:0043623;cellular protein complex assembly;1.83322649129692e-06!GO:0004298;threonine endopeptidase activity;2.19368267525951e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.33273571341651e-06!GO:0016563;transcription activator activity;2.43534415540439e-06!GO:0045259;proton-transporting ATP synthase complex;2.76824455670379e-06!GO:0006916;anti-apoptosis;2.99704748876806e-06!GO:0043066;negative regulation of apoptosis;3.01857136398103e-06!GO:0005815;microtubule organizing center;3.20943526943298e-06!GO:0009117;nucleotide metabolic process;3.29717662868046e-06!GO:0006752;group transfer coenzyme metabolic process;3.47690503976764e-06!GO:0045454;cell redox homeostasis;3.55430482063773e-06!GO:0003899;DNA-directed RNA polymerase activity;4.10192874055548e-06!GO:0006099;tricarboxylic acid cycle;4.48290585013598e-06!GO:0046356;acetyl-CoA catabolic process;4.48290585013598e-06!GO:0006084;acetyl-CoA metabolic process;4.82055462226235e-06!GO:0005788;endoplasmic reticulum lumen;4.87766411946476e-06!GO:0005762;mitochondrial large ribosomal subunit;5.2021663045699e-06!GO:0000315;organellar large ribosomal subunit;5.2021663045699e-06!GO:0005768;endosome;5.24513218579268e-06!GO:0009056;catabolic process;5.30032094255273e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.45125756345027e-06!GO:0006414;translational elongation;5.56512674938002e-06!GO:0003713;transcription coactivator activity;6.14007496674831e-06!GO:0065007;biological regulation;6.33113780159477e-06!GO:0045786;negative regulation of progression through cell cycle;6.68545840239423e-06!GO:0045449;regulation of transcription;6.75350336823757e-06!GO:0000245;spliceosome assembly;6.90668226600726e-06!GO:0051329;interphase of mitotic cell cycle;7.40494988324339e-06!GO:0006626;protein targeting to mitochondrion;8.73669439046806e-06!GO:0051325;interphase;1.10162108108101e-05!GO:0048475;coated membrane;1.10737937039435e-05!GO:0030117;membrane coat;1.10737937039435e-05!GO:0051168;nuclear export;1.20251014647807e-05!GO:0006613;cotranslational protein targeting to membrane;1.20251014647807e-05!GO:0005819;spindle;1.86207044795748e-05!GO:0048522;positive regulation of cellular process;2.2884349030621e-05!GO:0005525;GTP binding;2.39179316003821e-05!GO:0044452;nucleolar part;2.55748955088677e-05!GO:0006839;mitochondrial transport;2.63270180978739e-05!GO:0051170;nuclear import;2.63270180978739e-05!GO:0000151;ubiquitin ligase complex;2.9440066121678e-05!GO:0051427;hormone receptor binding;3.28654938536433e-05!GO:0051187;cofactor catabolic process;3.36921076523653e-05!GO:0030120;vesicle coat;3.36921076523653e-05!GO:0030662;coated vesicle membrane;3.36921076523653e-05!GO:0008186;RNA-dependent ATPase activity;3.48645747076215e-05!GO:0008654;phospholipid biosynthetic process;4.36902744743259e-05!GO:0016740;transferase activity;4.40607852772722e-05!GO:0031324;negative regulation of cellular metabolic process;4.70105599268586e-05!GO:0006606;protein import into nucleus;5.07720574675092e-05!GO:0000314;organellar small ribosomal subunit;5.26450915327527e-05!GO:0005763;mitochondrial small ribosomal subunit;5.26450915327527e-05!GO:0009109;coenzyme catabolic process;5.42642069142051e-05!GO:0019843;rRNA binding;5.71306232972448e-05!GO:0016853;isomerase activity;6.32788650034239e-05!GO:0006355;regulation of transcription, DNA-dependent;6.68624663951896e-05!GO:0016787;hydrolase activity;6.94691028794419e-05!GO:0000786;nucleosome;6.97630246853197e-05!GO:0035257;nuclear hormone receptor binding;6.98887329870327e-05!GO:0043681;protein import into mitochondrion;7.09823791608669e-05!GO:0044431;Golgi apparatus part;9.04367925780623e-05!GO:0043021;ribonucleoprotein binding;9.1850575207318e-05!GO:0006383;transcription from RNA polymerase III promoter;9.71482278066531e-05!GO:0008094;DNA-dependent ATPase activity;9.89343492485718e-05!GO:0006793;phosphorus metabolic process;0.000104259304732457!GO:0006796;phosphate metabolic process;0.000104259304732457!GO:0004004;ATP-dependent RNA helicase activity;0.000108300740517682!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000108414389114399!GO:0005657;replication fork;0.000113761645665256!GO:0000775;chromosome, pericentric region;0.000121859363820917!GO:0006352;transcription initiation;0.000139160559065912!GO:0030880;RNA polymerase complex;0.00014851880222361!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000155967546430196!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000160358099941964!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000164469556012689!GO:0005770;late endosome;0.000169306193276749!GO:0030867;rough endoplasmic reticulum membrane;0.000180726990027822!GO:0032561;guanyl ribonucleotide binding;0.000196534048317182!GO:0019001;guanyl nucleotide binding;0.000196534048317182!GO:0007051;spindle organization and biogenesis;0.000218182424166986!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000221322073379501!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000238567186756806!GO:0033116;ER-Golgi intermediate compartment membrane;0.000242027112011965!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000262719066614802!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000276375994818497!GO:0003682;chromatin binding;0.000321122418727128!GO:0008250;oligosaccharyl transferase complex;0.000345706021025392!GO:0009892;negative regulation of metabolic process;0.000362133960091584!GO:0006612;protein targeting to membrane;0.000373524345612943!GO:0003684;damaged DNA binding;0.00037547414400602!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000394143682361087!GO:0000428;DNA-directed RNA polymerase complex;0.000394143682361087!GO:0007010;cytoskeleton organization and biogenesis;0.000403478581937451!GO:0031988;membrane-bound vesicle;0.00042321630826426!GO:0045941;positive regulation of transcription;0.000424104279027644!GO:0016023;cytoplasmic membrane-bound vesicle;0.00044600456058001!GO:0042802;identical protein binding;0.000479420935882374!GO:0016363;nuclear matrix;0.000484931305069681!GO:0005684;U2-dependent spliceosome;0.000494470870682325!GO:0000049;tRNA binding;0.000505659223633663!GO:0044440;endosomal part;0.000522647379839248!GO:0010008;endosome membrane;0.000522647379839248!GO:0015631;tubulin binding;0.00052412141407134!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000536028443065429!GO:0051052;regulation of DNA metabolic process;0.000566745808983607!GO:0003746;translation elongation factor activity;0.000601021490246558!GO:0009165;nucleotide biosynthetic process;0.000606908064303915!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000617511108304412!GO:0031982;vesicle;0.000683429550736191!GO:0016310;phosphorylation;0.000767099807395417!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000779245472102485!GO:0015399;primary active transmembrane transporter activity;0.000779245472102485!GO:0045893;positive regulation of transcription, DNA-dependent;0.000784679317939686!GO:0005769;early endosome;0.000797801290813291!GO:0046474;glycerophospholipid biosynthetic process;0.000821203015757118!GO:0048471;perinuclear region of cytoplasm;0.000821203015757118!GO:0043065;positive regulation of apoptosis;0.000822503203175736!GO:0005048;signal sequence binding;0.000822503203175736!GO:0005885;Arp2/3 protein complex;0.000822503203175736!GO:0007006;mitochondrial membrane organization and biogenesis;0.000848504183424999!GO:0048487;beta-tubulin binding;0.000858430526929188!GO:0000075;cell cycle checkpoint;0.000863788906074305!GO:0003678;DNA helicase activity;0.000879949285807652!GO:0003702;RNA polymerase II transcription factor activity;0.000887399372861667!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000894160567500918!GO:0031410;cytoplasmic vesicle;0.000974271962747901!GO:0015992;proton transport;0.000975467762041714!GO:0006302;double-strand break repair;0.00101907585739946!GO:0016859;cis-trans isomerase activity;0.00101907585739946!GO:0018196;peptidyl-asparagine modification;0.00102567978379472!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00102567978379472!GO:0043068;positive regulation of programmed cell death;0.00103953188718529!GO:0005905;coated pit;0.00104186925573733!GO:0006818;hydrogen transport;0.00105966214746169!GO:0004527;exonuclease activity;0.00108109615297969!GO:0008632;apoptotic program;0.00109794345193101!GO:0051920;peroxiredoxin activity;0.00110639338990829!GO:0046489;phosphoinositide biosynthetic process;0.00110639338990829!GO:0004576;oligosaccharyl transferase activity;0.00110639338990829!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00110748287480156!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00110920227688156!GO:0016481;negative regulation of transcription;0.0011330776872985!GO:0006401;RNA catabolic process;0.0011356697132668!GO:0006402;mRNA catabolic process;0.00115384324333156!GO:0005798;Golgi-associated vesicle;0.00117930530136422!GO:0006091;generation of precursor metabolites and energy;0.00123417574290148!GO:0048468;cell development;0.00132265121803851!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0013755981185029!GO:0030176;integral to endoplasmic reticulum membrane;0.00140184181572156!GO:0030036;actin cytoskeleton organization and biogenesis;0.00142110046143753!GO:0003729;mRNA binding;0.00143941463830928!GO:0031252;leading edge;0.00148458518799617!GO:0048518;positive regulation of biological process;0.00153579298713774!GO:0005874;microtubule;0.00156697689601047!GO:0015980;energy derivation by oxidation of organic compounds;0.00159789143081449!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00163205957354863!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00163205957354863!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00163205957354863!GO:0006310;DNA recombination;0.00166310293697967!GO:0006405;RNA export from nucleus;0.00170394295923844!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00170494186225427!GO:0000139;Golgi membrane;0.00188702791143787!GO:0051087;chaperone binding;0.00188943559163322!GO:0000059;protein import into nucleus, docking;0.00191205508729244!GO:0016272;prefoldin complex;0.00201827578626854!GO:0043284;biopolymer biosynthetic process;0.00202515878467414!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00206052660252072!GO:0019867;outer membrane;0.00220638927737426!GO:0009451;RNA modification;0.002207775803512!GO:0031968;organelle outer membrane;0.00223144307337981!GO:0051789;response to protein stimulus;0.00234198300388572!GO:0006986;response to unfolded protein;0.00234198300388572!GO:0003711;transcription elongation regulator activity;0.00251891483886808!GO:0048500;signal recognition particle;0.00256621294236169!GO:0003690;double-stranded DNA binding;0.00284704522007229!GO:0016741;transferase activity, transferring one-carbon groups;0.00288806592355806!GO:0006611;protein export from nucleus;0.00294592439793654!GO:0051101;regulation of DNA binding;0.00296410678727652!GO:0005791;rough endoplasmic reticulum;0.00299851680422851!GO:0006891;intra-Golgi vesicle-mediated transport;0.00303975519488768!GO:0032508;DNA duplex unwinding;0.00325028335974154!GO:0032392;DNA geometric change;0.00325028335974154!GO:0008312;7S RNA binding;0.0033222927060511!GO:0006520;amino acid metabolic process;0.00357779683430755!GO:0008168;methyltransferase activity;0.0037397106151091!GO:0019899;enzyme binding;0.0038890529439115!GO:0005741;mitochondrial outer membrane;0.00401853136843221!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00401853136843221!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00401853136843221!GO:0004532;exoribonuclease activity;0.00428546166315064!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00428546166315064!GO:0008139;nuclear localization sequence binding;0.00446876690897724!GO:0016197;endosome transport;0.00456083613484923!GO:0006497;protein amino acid lipidation;0.0045912902473879!GO:0051252;regulation of RNA metabolic process;0.00468984958070679!GO:0000776;kinetochore;0.00489249536542761!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00501243761894707!GO:0016491;oxidoreductase activity;0.0051738157111075!GO:0005758;mitochondrial intermembrane space;0.0052874394127653!GO:0007088;regulation of mitosis;0.00531900868944261!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0053675110990066!GO:0045047;protein targeting to ER;0.0053675110990066!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0054674763665851!GO:0007017;microtubule-based process;0.00549691018446296!GO:0046467;membrane lipid biosynthetic process;0.00557974465695119!GO:0046983;protein dimerization activity;0.00565064963338937!GO:0035258;steroid hormone receptor binding;0.00581106412710499!GO:0000228;nuclear chromosome;0.00582918103962281!GO:0051540;metal cluster binding;0.00596935013580601!GO:0051536;iron-sulfur cluster binding;0.00596935013580601!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00605698464490684!GO:0005669;transcription factor TFIID complex;0.00605739632300561!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00620519319033848!GO:0004674;protein serine/threonine kinase activity;0.00636425393914586!GO:0017166;vinculin binding;0.00648549419392375!GO:0030118;clathrin coat;0.00685677231095632!GO:0008022;protein C-terminus binding;0.00709868558160761!GO:0000123;histone acetyltransferase complex;0.00724696553347445!GO:0006595;polyamine metabolic process;0.00772066915833521!GO:0016251;general RNA polymerase II transcription factor activity;0.00780964980635613!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00795502797542142!GO:0030029;actin filament-based process;0.00806986329356106!GO:0046483;heterocycle metabolic process;0.00806986329356106!GO:0043022;ribosome binding;0.0081255934548771!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00814684445529758!GO:0031970;organelle envelope lumen;0.00842964072596837!GO:0051098;regulation of binding;0.00858416122479793!GO:0000096;sulfur amino acid metabolic process;0.00884253250418501!GO:0030137;COPI-coated vesicle;0.00887890035308099!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00899333427747209!GO:0032200;telomere organization and biogenesis;0.00899333427747209!GO:0000723;telomere maintenance;0.00899333427747209!GO:0007052;mitotic spindle organization and biogenesis;0.00902902784384801!GO:0006268;DNA unwinding during replication;0.00904797637516719!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00909737286000394!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00918289568478791!GO:0042158;lipoprotein biosynthetic process;0.00921904347590994!GO:0008408;3'-5' exonuclease activity;0.00935846313438347!GO:0030663;COPI coated vesicle membrane;0.0093963191625314!GO:0030126;COPI vesicle coat;0.0093963191625314!GO:0042393;histone binding;0.00947459299101263!GO:0031124;mRNA 3'-end processing;0.00964503771548037!GO:0007059;chromosome segregation;0.0097295210348411!GO:0008361;regulation of cell size;0.00982928209723212!GO:0016044;membrane organization and biogenesis;0.00994075088335777!GO:0051539;4 iron, 4 sulfur cluster binding;0.0103749149262089!GO:0005832;chaperonin-containing T-complex;0.0104904181477401!GO:0031072;heat shock protein binding;0.0109397806586462!GO:0006740;NADPH regeneration;0.0111972634852729!GO:0006098;pentose-phosphate shunt;0.0111972634852729!GO:0006778;porphyrin metabolic process;0.0112309470168413!GO:0033013;tetrapyrrole metabolic process;0.0112309470168413!GO:0045892;negative regulation of transcription, DNA-dependent;0.0113262594965122!GO:0006506;GPI anchor biosynthetic process;0.0114060402540734!GO:0001558;regulation of cell growth;0.0115186106305189!GO:0006144;purine base metabolic process;0.0118820290692804!GO:0006650;glycerophospholipid metabolic process;0.0120634378136539!GO:0043492;ATPase activity, coupled to movement of substances;0.0121123482155701!GO:0030384;phosphoinositide metabolic process;0.0122527002218895!GO:0000922;spindle pole;0.0122970006005824!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0129952398377369!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0130096691810343!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0131120127006312!GO:0005773;vacuole;0.0131265700947856!GO:0030521;androgen receptor signaling pathway;0.0131489261260576!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0132606696504266!GO:0006289;nucleotide-excision repair;0.0136686699623976!GO:0006917;induction of apoptosis;0.0138150483918703!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0138763708614941!GO:0051287;NAD binding;0.0139641578630795!GO:0000082;G1/S transition of mitotic cell cycle;0.0140154170400067!GO:0008270;zinc ion binding;0.014298291934036!GO:0000792;heterochromatin;0.0145705622584924!GO:0046966;thyroid hormone receptor binding;0.0146472266105373!GO:0006275;regulation of DNA replication;0.0146506010803531!GO:0044454;nuclear chromosome part;0.0147908360867768!GO:0016584;nucleosome positioning;0.0148398454741621!GO:0007243;protein kinase cascade;0.0149548225584618!GO:0007264;small GTPase mediated signal transduction;0.0149751788908164!GO:0043189;H4/H2A histone acetyltransferase complex;0.015153817177217!GO:0006354;RNA elongation;0.0152115372996301!GO:0008538;proteasome activator activity;0.0152514300514872!GO:0000305;response to oxygen radical;0.0152514300514872!GO:0009112;nucleobase metabolic process;0.0152514300514872!GO:0008637;apoptotic mitochondrial changes;0.0152522881374249!GO:0004518;nuclease activity;0.0152522881374249!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.015466724233718!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0155186041271726!GO:0015002;heme-copper terminal oxidase activity;0.0155186041271726!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0155186041271726!GO:0004129;cytochrome-c oxidase activity;0.0155186041271726!GO:0005862;muscle thin filament tropomyosin;0.0155186041271726!GO:0007021;tubulin folding;0.0156518304353366!GO:0004003;ATP-dependent DNA helicase activity;0.0157016949146436!GO:0043488;regulation of mRNA stability;0.0159327762715236!GO:0043487;regulation of RNA stability;0.0159327762715236!GO:0030132;clathrin coat of coated pit;0.0159327762715236!GO:0022884;macromolecule transmembrane transporter activity;0.0160315445398076!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0160315445398076!GO:0006284;base-excision repair;0.0161313633419363!GO:0016407;acetyltransferase activity;0.0162402511802696!GO:0000178;exosome (RNase complex);0.0164701489786472!GO:0006505;GPI anchor metabolic process;0.016569778686318!GO:0016049;cell growth;0.0166952825693301!GO:0008652;amino acid biosynthetic process;0.0168260527641315!GO:0009303;rRNA transcription;0.0172162211048768!GO:0008320;protein transmembrane transporter activity;0.0172924030628892!GO:0003756;protein disulfide isomerase activity;0.0173009144473708!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0173009144473708!GO:0012502;induction of programmed cell death;0.0175730222498866!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0177509635014523!GO:0000781;chromosome, telomeric region;0.0178394071756778!GO:0007004;telomere maintenance via telomerase;0.0180201616351501!GO:0007346;regulation of progression through mitotic cell cycle;0.0181988365321512!GO:0006360;transcription from RNA polymerase I promoter;0.0182221925351356!GO:0007093;mitotic cell cycle checkpoint;0.0182731367951431!GO:0006378;mRNA polyadenylation;0.0187403773038228!GO:0006400;tRNA modification;0.0187403773038228!GO:0000175;3'-5'-exoribonuclease activity;0.0187403773038228!GO:0008287;protein serine/threonine phosphatase complex;0.0194648532756096!GO:0006779;porphyrin biosynthetic process;0.0198450846311949!GO:0033014;tetrapyrrole biosynthetic process;0.0198450846311949!GO:0030433;ER-associated protein catabolic process;0.0199132985430778!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0199132985430778!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0200314174795646!GO:0045039;protein import into mitochondrial inner membrane;0.0200314174795646!GO:0000209;protein polyubiquitination;0.0200355602616992!GO:0007050;cell cycle arrest;0.0200355602616992!GO:0035267;NuA4 histone acetyltransferase complex;0.0208105734905223!GO:0046822;regulation of nucleocytoplasmic transport;0.0210202119518329!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0212418275736031!GO:0022415;viral reproductive process;0.0212580394038409!GO:0030134;ER to Golgi transport vesicle;0.021282351273286!GO:0043495;protein anchor;0.0213697629592947!GO:0006509;membrane protein ectodomain proteolysis;0.0213697629592947!GO:0033619;membrane protein proteolysis;0.0213697629592947!GO:0030032;lamellipodium biogenesis;0.0216095808715523!GO:0005637;nuclear inner membrane;0.0218757015158039!GO:0006376;mRNA splice site selection;0.0225079567647634!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0225079567647634!GO:0008234;cysteine-type peptidase activity;0.0228054670913512!GO:0006739;NADP metabolic process;0.0231158374793672!GO:0065009;regulation of a molecular function;0.0232448936552291!GO:0046426;negative regulation of JAK-STAT cascade;0.0232716123587687!GO:0042168;heme metabolic process;0.0236533611942991!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0240493194108187!GO:0042770;DNA damage response, signal transduction;0.0252633785938823!GO:0050178;phenylpyruvate tautomerase activity;0.0253511543389503!GO:0005869;dynactin complex;0.025395622531546!GO:0007040;lysosome organization and biogenesis;0.0257661472552133!GO:0001726;ruffle;0.0261573460479995!GO:0043130;ubiquitin binding;0.0261875947107256!GO:0032182;small conjugating protein binding;0.0261875947107256!GO:0043624;cellular protein complex disassembly;0.0277510506161771!GO:0008092;cytoskeletal protein binding;0.0285121583005614!GO:0006007;glucose catabolic process;0.0285121583005614!GO:0030833;regulation of actin filament polymerization;0.0288257669264481!GO:0006338;chromatin remodeling;0.029399604029176!GO:0007030;Golgi organization and biogenesis;0.029888116955488!GO:0046979;TAP2 binding;0.0302760959143684!GO:0046977;TAP binding;0.0302760959143684!GO:0046978;TAP1 binding;0.0302760959143684!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0302760959143684!GO:0050681;androgen receptor binding;0.0308795920175477!GO:0009116;nucleoside metabolic process;0.0310884758006362!GO:0031123;RNA 3'-end processing;0.0311361670111043!GO:0006270;DNA replication initiation;0.0316415274492399!GO:0031570;DNA integrity checkpoint;0.0316578604394857!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0316758694868521!GO:0050662;coenzyme binding;0.0324875723084026!GO:0009893;positive regulation of metabolic process;0.0328857330590511!GO:0031902;late endosome membrane;0.0330886895021949!GO:0000030;mannosyltransferase activity;0.0332547624015751!GO:0031625;ubiquitin protein ligase binding;0.0333243159779846!GO:0030911;TPR domain binding;0.0336298409190823!GO:0005784;translocon complex;0.0343739610956859!GO:0006984;ER-nuclear signaling pathway;0.0348777268719999!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.035186187186975!GO:0051053;negative regulation of DNA metabolic process;0.0355517878369189!GO:0009396;folic acid and derivative biosynthetic process;0.0356438995312425!GO:0019783;small conjugating protein-specific protease activity;0.0360346595054979!GO:0030659;cytoplasmic vesicle membrane;0.0368109205222346!GO:0051128;regulation of cellular component organization and biogenesis;0.037127819688408!GO:0016654;oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor;0.0377708780152244!GO:0050811;GABA receptor binding;0.0382456033368663!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0382456033368663!GO:0008017;microtubule binding;0.0383740677335869!GO:0004680;casein kinase activity;0.0389095822719722!GO:0032507;maintenance of cellular protein localization;0.0394871575039493!GO:0046982;protein heterodimerization activity;0.0395890914801956!GO:0022890;inorganic cation transmembrane transporter activity;0.0400244752153291!GO:0003725;double-stranded RNA binding;0.0401133047142079!GO:0000339;RNA cap binding;0.0401133047142079!GO:0006733;oxidoreduction coenzyme metabolic process;0.0408398186255528!GO:0006220;pyrimidine nucleotide metabolic process;0.0408513482256535!GO:0006082;organic acid metabolic process;0.0414606378071724!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0417398316290587!GO:0010257;NADH dehydrogenase complex assembly;0.0417398316290587!GO:0033108;mitochondrial respiratory chain complex assembly;0.0417398316290587!GO:0008180;signalosome;0.0422577392141151!GO:0005844;polysome;0.0424934460225546!GO:0006783;heme biosynthetic process;0.0424937130549161!GO:0030968;unfolded protein response;0.0425659797128967!GO:0046914;transition metal ion binding;0.0427478800820662!GO:0004843;ubiquitin-specific protease activity;0.0427851626756083!GO:0000790;nuclear chromatin;0.042787900035332!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0428025846107143!GO:0019752;carboxylic acid metabolic process;0.0428263659762022!GO:0044433;cytoplasmic vesicle part;0.0428263659762022!GO:0016311;dephosphorylation;0.0429631105184556!GO:0030127;COPII vesicle coat;0.0431342871362259!GO:0012507;ER to Golgi transport vesicle membrane;0.0431342871362259!GO:0005876;spindle microtubule;0.0441532776503644!GO:0005732;small nucleolar ribonucleoprotein complex;0.0444151886352035!GO:0043596;nuclear replication fork;0.0449799460155342!GO:0000303;response to superoxide;0.0451448989892018!GO:0007033;vacuole organization and biogenesis;0.0455842000935436!GO:0008537;proteasome activator complex;0.0465822329400843!GO:0030503;regulation of cell redox homeostasis;0.0478435196296074!GO:0030119;AP-type membrane coat adaptor complex;0.0482850082138335!GO:0017134;fibroblast growth factor binding;0.0487824883048894!GO:0001836;release of cytochrome c from mitochondria;0.0495811963731395!GO:0031901;early endosome membrane;0.0495963296218249!GO:0046519;sphingoid metabolic process;0.0498324423805937
|sample_id=10850
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=mesothelium
|top_motifs=NKX3-1:1.99357304368;ELK1,4_GABP{A,B1}:1.96479837922;bHLH_family:1.61149083975;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.43481251279;ZIC1..3:1.2597314202;HIF1A:1.19422523282;ZNF384:1.07528226017;RXR{A,B,G}:1.04392250262;NR6A1:1.00602156915;POU2F1..3:0.852026270251;TFDP1:0.837500324225;CDX1,2,4:0.81629252756;RBPJ:0.774830152419;PBX1:0.763489031288;ATF4:0.742252039551;LMO2:0.73923244063;MYOD1:0.735733809683;ZNF143:0.691999638468;IRF7:0.649148216048;LHX3,4:0.647387125282;E2F1..5:0.642017863654;TEAD1:0.591728818609;POU1F1:0.56450910177;UFEwm:0.558001601906;HOX{A6,A7,B6,B7}:0.5060563769;NFE2L1:0.49400342943;NKX3-2:0.439403394166;CRX:0.42968631129;PAX5:0.402651134121;GTF2A1,2:0.400339209236;STAT5{A,B}:0.395959047847;GCM1,2:0.38657176454;AIRE:0.38486021274;RFX1:0.381501078417;GFI1:0.373019779288;TEF:0.338337096478;HLF:0.333640186693;PPARG:0.326005518294;ONECUT1,2:0.308281193564;ZNF423:0.291900395962;TOPORS:0.285207804865;NRF1:0.275872508221;YY1:0.270601264739;ZEB1:0.264941347285;CREB1:0.24129686448;TFAP2B:0.239311160509;ESRRA:0.222921324475;FOXM1:0.222564707787;CEBPA,B_DDIT3:0.213503573224;NFY{A,B,C}:0.210591696374;RREB1:0.20817025798;IRF1,2:0.196984756249;SRF:0.1801275684;RXRA_VDR{dimer}:0.157174331869;EN1,2:0.152025054003;PAX4:0.136301953863;ZNF148:0.134357276547;SNAI1..3:0.129027988249;ESR1:0.12212049332;HOXA9_MEIS1:0.118298631326;NFE2:0.109988321377;NFKB1_REL_RELA:0.0810003812546;RORA:0.0796752913898;MYB:0.0779632155061;REST:0.0724913722901;XCPE1{core}:0.069043078491;HES1:0.0675778258158;FOXQ1:0.0634884093018;TBX4,5:0.0596226817176;GFI1B:0.056405945227;SOX2:0.0485679986744;HOX{A5,B5}:0.0311849666693;CUX2:0.0302438127355;EBF1:0.0299047832626;AHR_ARNT_ARNT2:0.0289100496534;SOX17:0.0244516857957;ADNP_IRX_SIX_ZHX:0.0194065579615;ELF1,2,4:0.0135454607017;IKZF1:0.012992185398;NFIX:-0.00844796291885;FOS_FOS{B,L1}_JUN{B,D}:-0.0275220821999;TLX1..3_NFIC{dimer}:-0.0343772900531;GLI1..3:-0.0355011688248;BREu{core}:-0.0554750856314;TBP:-0.0672092559906;ALX4:-0.0683797209552;HNF4A_NR2F1,2:-0.0779523433064;MZF1:-0.0787408764036;BACH2:-0.0911364449834;TP53:-0.114275613767;HIC1:-0.120399635056;KLF4:-0.152316661929;JUN:-0.153601565232;EVI1:-0.162692910233;PRRX1,2:-0.175686729676;MAZ:-0.18632372929;SOX{8,9,10}:-0.187994831356;GZF1:-0.199759646882;TFCP2:-0.205098845563;T:-0.215001549798;HAND1,2:-0.222629704128;HMGA1,2:-0.233844054019;ATF5_CREB3:-0.242804847904;PAX6:-0.244555908827;FOXA2:-0.255288808399;ATF2:-0.259743553683;ATF6:-0.276824716025;NR3C1:-0.280209015242;STAT2,4,6:-0.284483533317;PRDM1:-0.289787292622;MTE{core}:-0.299715594041;FOXP3:-0.300279196129;HNF1A:-0.306233787277;NR1H4:-0.307778797769;LEF1_TCF7_TCF7L1,2:-0.312869401529;NANOG:-0.313178257879;ARID5B:-0.319818974349;STAT1,3:-0.321471914529;PATZ1:-0.330056024463;HOX{A4,D4}:-0.348653324292;MAFB:-0.351550714614;GATA6:-0.367591913328;OCT4_SOX2{dimer}:-0.376853968317;SMAD1..7,9:-0.377251775515;DMAP1_NCOR{1,2}_SMARC:-0.3837220226;EGR1..3:-0.396278922728;NKX2-2,8:-0.39655540121;XBP1:-0.397376530377;FOXL1:-0.399980666953;MEF2{A,B,C,D}:-0.404420498031;POU3F1..4:-0.411108796234;TFAP2{A,C}:-0.418935974968;SPIB:-0.428293446417;RUNX1..3:-0.444569865387;FOX{F1,F2,J1}:-0.462128878992;SPI1:-0.463489665414;ETS1,2:-0.478113668456;FOSL2:-0.481678645053;GTF2I:-0.491995479006;TAL1_TCF{3,4,12}:-0.500516908805;PAX8:-0.508637023866;ZBTB6:-0.511175522901;MTF1:-0.525021100489;ALX1:-0.533848832123;AR:-0.544043178215;ZBTB16:-0.570456849336;SOX5:-0.573312175308;NKX6-1,2:-0.577727936341;TFAP4:-0.592761681499;FOX{I1,J2}:-0.593273721343;EP300:-0.602979518156;NFE2L2:-0.610447696974;NANOG{mouse}:-0.64745790271;SPZ1:-0.658749061097;ZFP161:-0.659499565952;MYFfamily:-0.663329989021;PITX1..3:-0.672552285269;PAX1,9:-0.674039536315;NFIL3:-0.688675916139;MED-1{core}:-0.691665182158;NR5A1,2:-0.693117811378;GATA4:-0.734565427099;SP1:-0.739957711123;PAX2:-0.740154828318;NKX2-3_NKX2-5:-0.769656330213;FOXP1:-0.777117960392;RFX2..5_RFXANK_RFXAP:-0.791496884957;POU5F1:-0.81336774992;ZNF238:-0.818725552416;NKX2-1,4:-0.821799035582;MYBL2:-0.831327015147;NFATC1..3:-0.832510072279;FOXN1:-0.862075389672;SREBF1,2:-0.873434225832;IKZF2:-0.887094718157;POU6F1:-0.892133187954;CDC5L:-0.963055279593;HSF1,2:-0.967467325639;HMX1:-0.9776830385;FOXD3:-1.04460640719;PDX1:-1.05380558323;FOX{D1,D2}:-1.09239887899;HBP1_HMGB_SSRP1_UBTF:-1.11699504073;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.16588521937;VSX1,2:-1.17078689575;FOXO1,3,4:-1.17308371853;NHLH1,2:-1.18751201287;PAX3,7:-1.26526255956;TLX2:-1.43622443077;TGIF1:-1.46856978502;BPTF:-1.56300782927;DBP:-1.87858200755
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10850-111F4;search_select_hide=table117:FF:10850-111F4
}}
}}

Latest revision as of 15:09, 3 June 2020

Name:mesothelioma cell line:Mero-25
Species:Human (Homo sapiens)
Library ID:CNhs13066
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexmale
age60
cell typemesothelial cell
cell lineMero-25
companyECACC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005468
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13066 CAGE DRX007939 DRR008811
Accession ID Hg19

Library idBAMCTSS
CNhs13066 DRZ000236 DRZ001621
Accession ID Hg38

Library idBAMCTSS
CNhs13066 DRZ011586 DRZ012971
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.155
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.169
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0281
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.144
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.125
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.101
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.00425
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0263
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.522
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.279
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.114
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.101
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.101
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13066

Jaspar motifP-value
MA0002.20.069
MA0003.10.941
MA0004.10.00949
MA0006.10.763
MA0007.10.934
MA0009.10.357
MA0014.10.248
MA0017.10.223
MA0018.20.0124
MA0019.10.531
MA0024.10.0197
MA0025.10.384
MA0027.10.574
MA0028.11.55755e-14
MA0029.10.82
MA0030.10.473
MA0031.10.00487
MA0035.20.167
MA0038.10.455
MA0039.20.174
MA0040.10.484
MA0041.10.61
MA0042.10.595
MA0043.10.00397
MA0046.10.316
MA0047.20.0536
MA0048.10.00301
MA0050.15.67887e-4
MA0051.11.91751e-7
MA0052.10.0954
MA0055.10.00235
MA0057.10.635
MA0058.10.00811
MA0059.12.42819e-4
MA0060.10.0157
MA0061.10.813
MA0062.22.16146e-16
MA0065.20.0331
MA0066.10.413
MA0067.10.53
MA0068.10.417
MA0069.10.914
MA0070.10.0485
MA0071.10.751
MA0072.10.498
MA0073.10.847
MA0074.10.663
MA0076.11.24193e-12
MA0077.10.337
MA0078.10.617
MA0079.20.312
MA0080.21.7572e-7
MA0081.10.901
MA0083.10.997
MA0084.10.416
MA0087.10.272
MA0088.10.0121
MA0090.10.253
MA0091.10.113
MA0092.10.871
MA0093.10.00534
MA0099.20.0653
MA0100.10.368
MA0101.10.273
MA0102.20.72
MA0103.10.115
MA0104.20.00409
MA0105.10.485
MA0106.10.72
MA0107.10.37
MA0108.20.319
MA0111.10.353
MA0112.20.316
MA0113.10.179
MA0114.10.551
MA0115.10.596
MA0116.10.579
MA0117.10.581
MA0119.10.0905
MA0122.10.439
MA0124.10.0306
MA0125.10.344
MA0131.10.284
MA0135.10.837
MA0136.10.0297
MA0137.20.751
MA0138.20.381
MA0139.10.684
MA0140.10.286
MA0141.10.467
MA0142.10.238
MA0143.10.0496
MA0144.10.0678
MA0145.10.611
MA0146.10.0412
MA0147.10.00102
MA0148.10.212
MA0149.10.158
MA0150.10.111
MA0152.10.608
MA0153.10.738
MA0154.10.162
MA0155.10.102
MA0156.10.0499
MA0157.10.0137
MA0159.10.067
MA0160.10.709
MA0162.10.0877
MA0163.10.875
MA0164.10.159
MA0258.10.421
MA0259.10.0525



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13066

Novel motifP-value
10.566
100.883
1000.047
1010.279
1020.82
1030.989
1040.725
1050.122
1060.259
1070.493
1080.6
1090.15
110.715
1100.403
1110.988
1120.397
1130.00315
1140.213
1150.676
1160.908
1170.196
1180.328
1190.699
120.631
1200.0311
1210.797
1220.199
1230.0605
1240.0193
1250.599
1260.874
1270.468
1280.00105
1290.137
130.00211
1300.909
1310.816
1320.768
1330.677
1340.161
1350.00415
1360.00709
1370.0202
1380.317
1390.0682
140.249
1400.302
1410.434
1420.793
1430.149
1440.685
1450.0776
1460.459
1470.929
1480.0433
1490.299
150.726
1500.306
1510.213
1520.00617
1530.0798
1540.0835
1550.945
1560.631
1570.588
1580.296
1590.992
160.93
1600.541
1610.319
1620.8
1630.934
1640.0275
1650.15
1660.302
1670.488
1680.092
1690.458
170.695
180.25
190.379
20.319
200.117
210.826
220.619
230.0213
240.799
250.424
260.645
270.287
280.809
290.123
30.309
300.485
310.972
320.153
330.159
340.344
350.735
360.515
370.125
380.601
390.661
40.861
400.0149
410.0416
420.762
430.261
440.704
450.537
460.751
470.581
480.629
490.233
50.0272
500.782
510.643
520.129
530.111
540.336
550.0397
560.914
570.765
580.104
590.778
60.305
600.13
610.388
620.0814
630.632
640.914
650.172
660.0884
670.896
680.446
690.945
70.575
700.338
710.83
720.41
730.0101
740.036
750.0511
760.393
770.76
780.717
790.44
80.833
800.0715
810.416
820.115
830.366
840.0899
850.0672
860.928
870.0269
880.85
890.794
90.189
900.00206
910.0175
920.0143
930.559
940.969
950.0417
960.215
970.782
980.374
990.901



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13066


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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