FF:11230-116C6: Difference between revisions

Latest revision as of 16:26, 3 June 2020

Name:	Natural Killer Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs10859
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	47 years old adult
sex	male
age	47
cell type	natural killer cell
cell line	NA
company	3HBiomedical
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NK725
catalog number	3H100-50-10
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005732

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10859		CAGE		DRX008370		DRR009242

Accession ID Hg19

Library id		BAM		CTSS
CNhs10859		DRZ000667		DRZ002052

Accession ID Hg38

Library id		BAM		CTSS
CNhs10859		DRZ012017		DRZ013402

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005732

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10010.ATGTCA		sRNA-Seq		DRX037156		DRR041522

Accession ID Hg19

Library id		BAM		CTSS
SRhi10010.ATGTCA		DRZ007164

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.0781
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.202
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.128
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0781
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.22
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.527
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.773
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0781
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.411
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.847
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.144
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.842
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.581
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.144
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.527
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.13
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0781
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.202
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.144
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0418
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.875
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.758
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.00101
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.501
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.376
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0088
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.583
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.592
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.202
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.739
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.376
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.043
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.443
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.209
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.859
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.528
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.707
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.144
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.144
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.779
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.173
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.109
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.0781
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.871
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.144
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.852
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0.773
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.252
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.758
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10859

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.51098e-7
MA0003.1	MA0003.1	0.488
MA0004.1	MA0004.1	0.948
MA0006.1	MA0006.1	0.189
MA0007.1	MA0007.1	0.314
MA0009.1	MA0009.1	0.00446
MA0014.1	MA0014.1	0.841
MA0017.1	MA0017.1	0.132
MA0018.2	MA0018.2	3.04124e-10
MA0019.1	MA0019.1	0.77
MA0024.1	MA0024.1	0.677
MA0025.1	MA0025.1	0.00471
MA0027.1	MA0027.1	0.699
MA0028.1	MA0028.1	0.00393
MA0029.1	MA0029.1	0.584
MA0030.1	MA0030.1	0.00253
MA0031.1	MA0031.1	6.62906e-5
MA0035.2	MA0035.2	0.67
MA0038.1	MA0038.1	0.268
MA0039.2	MA0039.2	0.423
MA0040.1	MA0040.1	0.848
MA0041.1	MA0041.1	0.305
MA0042.1	MA0042.1	0.824
MA0043.1	MA0043.1	2.18678e-8
MA0046.1	MA0046.1	0.0425
MA0047.2	MA0047.2	0.546
MA0048.1	MA0048.1	0.954
MA0050.1	MA0050.1	1.6634e-10
MA0051.1	MA0051.1	2.18228e-4
MA0052.1	MA0052.1	0.336
MA0055.1	MA0055.1	0.527
MA0057.1	MA0057.1	0.136
MA0058.1	MA0058.1	0.937
MA0059.1	MA0059.1	0.511
MA0060.1	MA0060.1	0.174
MA0061.1	MA0061.1	1.24487e-20
MA0062.2	MA0062.2	2.86028e-15
MA0065.2	MA0065.2	0.812
MA0066.1	MA0066.1	0.486
MA0067.1	MA0067.1	5.07221e-5
MA0068.1	MA0068.1	0.807
MA0069.1	MA0069.1	0.826
MA0070.1	MA0070.1	0.343
MA0071.1	MA0071.1	0.733
MA0072.1	MA0072.1	0.00218
MA0073.1	MA0073.1	0.535
MA0074.1	MA0074.1	0.765
MA0076.1	MA0076.1	0.00101
MA0077.1	MA0077.1	0.284
MA0078.1	MA0078.1	0.91
MA0079.2	MA0079.2	0.835
MA0080.2	MA0080.2	5.04126e-13
MA0081.1	MA0081.1	4.01043e-4
MA0083.1	MA0083.1	0.282
MA0084.1	MA0084.1	0.14
MA0087.1	MA0087.1	0.729
MA0088.1	MA0088.1	0.202
MA0090.1	MA0090.1	2.49064e-4
MA0091.1	MA0091.1	0.257
MA0092.1	MA0092.1	0.828
MA0093.1	MA0093.1	0.865
MA0099.2	MA0099.2	3.0888e-6
MA0100.1	MA0100.1	0.561
MA0101.1	MA0101.1	1.13079e-15
MA0102.2	MA0102.2	0.00372
MA0103.1	MA0103.1	0.155
MA0104.2	MA0104.2	0.751
MA0105.1	MA0105.1	4.2297e-11
MA0106.1	MA0106.1	0.027
MA0107.1	MA0107.1	1.42638e-15
MA0108.2	MA0108.2	0.00567
MA0111.1	MA0111.1	0.361
MA0112.2	MA0112.2	0.157
MA0113.1	MA0113.1	0.248
MA0114.1	MA0114.1	0.131
MA0115.1	MA0115.1	0.0568
MA0116.1	MA0116.1	0.155
MA0117.1	MA0117.1	0.0035
MA0119.1	MA0119.1	0.173
MA0122.1	MA0122.1	0.932
MA0124.1	MA0124.1	0.209
MA0125.1	MA0125.1	0.0739
MA0131.1	MA0131.1	0.106
MA0135.1	MA0135.1	0.255
MA0136.1	MA0136.1	1.29e-21
MA0137.2	MA0137.2	0.952
MA0138.2	MA0138.2	0.00662
MA0139.1	MA0139.1	0.952
MA0140.1	MA0140.1	0.969
MA0141.1	MA0141.1	0.101
MA0142.1	MA0142.1	0.174
MA0143.1	MA0143.1	0.139
MA0144.1	MA0144.1	0.927
MA0145.1	MA0145.1	0.0948
MA0146.1	MA0146.1	1
MA0147.1	MA0147.1	0.818
MA0148.1	MA0148.1	0.643
MA0149.1	MA0149.1	0.934
MA0150.1	MA0150.1	0.00229
MA0152.1	MA0152.1	0.0154
MA0153.1	MA0153.1	0.0504
MA0154.1	MA0154.1	0.677
MA0155.1	MA0155.1	0.142
MA0156.1	MA0156.1	9.86036e-19
MA0157.1	MA0157.1	0.00628
MA0159.1	MA0159.1	0.804
MA0160.1	MA0160.1	0.911
MA0162.1	MA0162.1	0.183
MA0163.1	MA0163.1	0.0429
MA0164.1	MA0164.1	0.803
MA0258.1	MA0258.1	0.56
MA0259.1	MA0259.1	0.868

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10859

Novel motif	Logo	P-value
1	1	0.904
10	10	0.0169
100	100	0.792
101	101	0.56
102	102	0.992
103	103	0.798
104	104	0.694
105	105	0.402
106	106	0.25
107	107	0.038
108	108	0.36
109	109	0.857
11	11	0.891
110	110	0.36
111	111	0.536
112	112	0.896
113	113	0.277
114	114	0.934
115	115	0.215
116	116	0.112
117	117	0.0134
118	118	0.469
119	119	0.333
12	12	0.371
120	120	0.192
121	121	0.392
122	122	0.648
123	123	0.00365
124	124	0.944
125	125	0.593
126	126	0.442
127	127	0.764
128	128	0.884
129	129	0.252
13	13	0.5
130	130	0.262
131	131	0.273
132	132	0.0845
133	133	0.471
134	134	0.831
135	135	0.679
136	136	0.874
137	137	0.0231
138	138	0.479
139	139	0.18
14	14	0.475
140	140	0.733
141	141	0.875
142	142	0.519
143	143	0.00909
144	144	0.879
145	145	0.543
146	146	0.551
147	147	0.0226
148	148	0.542
149	149	0.121
15	15	0.301
150	150	0.991
151	151	0.443
152	152	0.841
153	153	0.893
154	154	0.249
155	155	0.101
156	156	0.694
157	157	0.687
158	158	0.0133
159	159	0.609
16	16	0.287
160	160	0.0307
161	161	0.924
162	162	0.00736
163	163	0.897
164	164	0.173
165	165	0.632
166	166	0.572
167	167	0.214
168	168	0.719
169	169	0.211
17	17	0.708
18	18	0.846
19	19	0.0298
2	2	0.139
20	20	0.178
21	21	0.551
22	22	0.314
23	23	0.994
24	24	0.776
25	25	0.189
26	26	0.763
27	27	0.489
28	28	0.394
29	29	0.128
3	3	0.729
30	30	0.0921
31	31	0.632
32	32	0.00241
33	33	0.365
34	34	0.518
35	35	0.431
36	36	0.0986
37	37	0.498
38	38	0.709
39	39	0.478
4	4	0.765
40	40	0.919
41	41	0.0387
42	42	0.544
43	43	0.445
44	44	0.492
45	45	0.163
46	46	0.911
47	47	0.963
48	48	0.864
49	49	0.285
5	5	0.482
50	50	0.523
51	51	0.922
52	52	0.869
53	53	0.357
54	54	0.968
55	55	0.313
56	56	0.776
57	57	0.614
58	58	0.206
59	59	0.189
6	6	0.774
60	60	0.521
61	61	0.326
62	62	0.335
63	63	0.637
64	64	0.912
65	65	0.561
66	66	0.447
67	67	0.615
68	68	0.606
69	69	0.576
7	7	0.559
70	70	0.28
71	71	0.24
72	72	0.24
73	73	0.528
74	74	0.952
75	75	0.0731
76	76	0.132
77	77	0.00315
78	78	0.983
79	79	0.893
8	8	0.215
80	80	0.00856
81	81	0.971
82	82	0.667
83	83	0.59
84	84	0.147
85	85	0.761
86	86	0.0495
87	87	0.894
88	88	0.725
89	89	0.00789
9	9	0.965
90	90	0.833
91	91	0.703
92	92	0.586
93	93	0.656
94	94	0.222
95	95	0.289
96	96	0.934
97	97	0.559
98	98	0.597
99	99	4.34782e-7

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10859

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000119 human natural killer cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000623 (natural killer cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000119 (human natural killer cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005732
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005732
+|accession_numbers=CAGE;DRX008370;DRR009242;DRZ000667;DRZ002052;DRZ012017;DRZ013402
+|accession_numbers_RNASeq=sRNA-Seq;DRX037156;DRR041522;DRZ007164
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000623
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:25256756..25256774,-!p1@RUNX3!2.43!482.92!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!2.27!250.43!STAT4;;chr17:45810594..45810608,+!p1@TBX21!2.15!139.89!TBX21;;chr2:157189180..157189290,-!p1@NR4A2!1.94!422.63!NR4A2;;chr19:45971246..45971265,+!p1@FOSB!1.90!1377.44!FOSB;;chr2:68592406..68592424,+!p1@PLEK!1.89!76.64!PLEK;;chr19:54041669..54041697,+!p2@ZNF331!1.86!71.52!ZNF331;;chr1:26697243..26697258,-!p1@ZNF683!1.85!69.35!ZNF683;;chr19:54058073..54058088,+!p1@ZNF331!1.84!68.57!ZNF331;;chr9:117150254..117150271,-!p1@AKNA!1.82!170.83!AKNA;;chr2:61108878..61108891,+!p5@REL!1.81!63.64!REL;;chr7:50343634..50343717,+!p2@IKZF1!1.81!63.05!IKZF1;;chr6:106546808..106546833,+!p3@PRDM1!1.78!73.49!PRDM1;;chr2:192015677..192015691,-!p3@STAT4!1.78!59.11!STAT4;;chr20:50159198..50159299,-!p1@NFATC2!1.77!82.56!NFATC2;;chr3:63953435..63953499,+!p1@ATXN7!1.75!54.97!ATXN7;;chr10:35484053..35484076,+!p1@CREM!1.74!131.03!CREM;;chr10:8096772..8096787,+!p2@GATA3!1.72!60.49!GATA3;;chr15:60884706..60884743,-!p1@RORA!1.71!249.44!RORA;;chr2:145271342..145271377,-!p5@ZEB2!1.68!46.70!ZEB2;;chr14:75745523..75745537,+!p1@FOS!1.67!5105.66!FOS;;chr2:192015750..192015793,-!p2@STAT4!1.67!60.88!STAT4;;chr20:56195474..56195506,-!p1@ZBP1!1.66!44.33!ZBP1;;chr10:8096631..8096660,+!p1@GATA3!1.65!53.00!GATA3;;chr3:39195075..39195088,-!p1@CSRNP1!1.61!238.80!CSRNP1;;chr17:38020392..38020477,-!p1@IKZF3!1.61!39.80!IKZF3;;chr5:133451294..133451310,+!p2@TCF7!1.61!39.80!TCF7;;chr5:133450365..133450444,+!p1@TCF7!1.58!163.93!TCF7;;chr14:64971288..64971316,-!p2@ZBTB25!1.58!110.53!ZBTB25;;chr9:3525727..3525828,-!p2@RFX3!1.56!88.27!RFX3;;chr16:85932760..85932775,+!p1@IRF8!1.56!35.47!IRF8;;chr2:231090433..231090469,+!p1@SP140!1.56!35.47!SP140;;chr9:102584262..102584276,+!p1@NR4A3!1.55!75.86!NR4A3;;chr8:67525443..67525459,-!p2@MYBL1!1.54!49.85!MYBL1;;chrY:21906594..21906622,-!p1@KDM5D!1.54!33.69!KDM5D;;chr6:391743..391759,+!p1@IRF4!1.53!32.51!IRF4;;chr2:145277640..145277771,-!p1@ZEB2!1.51!403.52!ZEB2;;chr12:72056800..72056834,+!p1@THAP2!1.51!41.77!THAP2;;chr1:25291475..25291511,-!p2@RUNX3!1.51!31.13!RUNX3;;chr8:123793988..123794016,+!p1@ZHX2!1.50!52.80!ZHX2;;chr1:26697189..26697205,-!p2@ZNF683!1.49!29.95!ZNF683;;chr2:231090471..231090504,+!p2@SP140!1.49!29.75!SP140;;chr1:59249688..59249703,-!p3@JUN!1.48!168.46!JUN;;chr17:37934365..37934387,-!p2@IKZF3!1.47!28.77!IKZF3;;chr1:59249707..59249727,-!p1@JUN!1.46!1123.86!JUN;;chr8:81397820..81397836,+!p2@ZBTB10!1.46!34.48!ZBTB10;;chr4:57522166..57522260,-!p2@HOPX!1.45!30.93!HOPX;;chr5:131826457..131826514,-!p1@IRF1!1.44!998.75!IRF1;;chr19:16435625..16435682,+!p1@KLF2!1.42!774.53!KLF2;;chr10:35484090..35484104,+!p6@CREM!1.41!24.63!CREM;;chr6:106546834..106546850,+!p4@PRDM1!1.40!23.84!PRDM1;;chr7:104654690..104654704,+!p2@MLL5!1.38!45.12!MLL5;;chr8:123793252..123793266,+!p10@ZHX2!1.38!23.25!ZHX2;;chr21:36421347..36421380,-!p8@RUNX1!1.38!23.25!RUNX1;;chrX:106960285..106960299,-!p1@TSC22D3!1.37!585.18!TSC22D3;;chr8:81397846..81397860,+!p3@ZBTB10!1.37!27.98!ZBTB10;;chr4:57522513..57522548,-!p4@HOPX!1.37!22.46!HOPX;;chr3:5020939..5020952,+!p2@BHLHE40!1.36!67.58!BHLHE40;;chr7:50343895..50343936,+!p5@IKZF1!1.36!21.67!IKZF1;;chr3:23986824..23986848,+!p2@NR1D2!1.35!117.23!NR1D2;;chr10:35416142..35416169,+!p3@CREM!1.35!55.17!CREM;;chr8:81397876..81397898,+!p5@ZBTB10!1.35!25.02!ZBTB10;;chr18:46475696..46475713,-!p1@SMAD7!1.35!24.04!SMAD7;;chr6:91006518..91006570,-!p1@BACH2!1.34!47.68!BACH2;;chr4:109087445..109087463,-!p1@LEF1!1.34!20.89!LEF1;;chr4:57522598..57522664,-!p3@HOPX!1.34!20.89!HOPX;;chr1:151030536..151030549,+!p8@MLLT11!1.34!20.69!MLLT11;;chr4:103422499..103422632,+!p1@NFKB1!1.33!412.19!NFKB1;;chr10:3824332..3824425,-!p4@KLF6!1.32!31.92!KLF6;;chr12:72056773..72056796,+!p3@THAP2!1.29!24.04!THAP2;;chr6:106546786..106546802,+!p6@PRDM1!1.29!18.32!PRDM1;;chr7:137620650..137620677,-!p3@CREB3L2!1.29!18.32!CREB3L2;;chr17:38497662..38497713,+!p4@RARA!1.28!21.08!RARA;;chr19:12902289..12902307,+!p1@JUNB!1.27!3938.05!JUNB;;chr7:104654718..104654741,+!p3@MLL5!1.27!25.61!MLL5;;chr3:71542615..71542644,-!p12@FOXP1!1.27!17.54!FOXP1;;chr14:35873947..35873965,-!p1@NFKBIA!1.26!1047.02!NFKBIA;;chr2:61108695..61108753,+!p1@REL!1.26!115.46!REL;;chr9:102584241..102584261,+!p4@NR4A3!1.26!26.60!NR4A3;;chr3:18486354..18486377,-!p2@SATB1!1.26!21.67!SATB1;;chr11:47400078..47400106,-!p1@SPI1!1.26!17.34!SPI1;;chr2:68592394..68592405,+!p2@PLEK!1.26!17.14!PLEK;;chr1:10754477..10754517,-!p1@CASZ1!1.25!27.98!CASZ1;;chr3:27763807..27763822,-!p1@EOMES!1.24!16.55!EOMES;;chr6:106546731..106546755,+!p5@PRDM1!1.24!16.35!PRDM1;;chr19:12721790..12721810,+!p2@ZNF791!1.23!43.74!ZNF791;;chr19:19729477..19729542,-!p1@PBX4!1.23!34.28!PBX4;;chr19:45972701..45972774,+!p2@FOSB!1.23!21.87!FOSB;;chr13:74707894..74707947,-!p6@KLF12!1.22!17.14!KLF12;;chr7:50344289..50344323,+!p1@IKZF1!1.22!15.57!IKZF1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.21!21.28!NFKBIZ;;chr3:39195037..39195069,-!p2@CSRNP1!1.20!91.23!CSRNP1;;chrX:106960221..106960236,-!p3@TSC22D3!1.20!40.98!TSC22D3;;chr9:102584128..102584144,+!p3@NR4A3!1.20!28.18!NR4A3;;chr11:67007611..67007622,+!p6@KDM2A!1.18!18.91!KDM2A;;chr10:104154415..104154434,+!p5@NFKB2!1.18!14.19!NFKB2;;chr2:208394817..208394834,+!p3@CREB1!1.17!55.56!CREB1;;chr3:71355163..71355209,-!p5@FOXP1!1.17!19.31!FOXP1;;chr11:85375237..85375277,-!p4@CREBZF!1.17!15.96!CREBZF;;chr10:104154246..104154347,+!p3@NFKB2!1.16!80.98!NFKB2;;chrX:106960180..106960197,-!p2@TSC22D3!1.16!50.64!TSC22D3;;chr3:39195139..39195150,-!p3@CSRNP1!1.16!16.94!CSRNP1;;chr2:214017168..214017189,-!p8@IKZF2!1.16!13.60!IKZF2;;chr19:54041645..54041661,+!p5@ZNF331!1.16!13.60!ZNF331;;chr16:89789271..89789291,+!p5@ZNF276!1.15!13.20!ZNF276;;chr7:50344251..50344288,+!p3@IKZF1!1.15!13.20!IKZF1;;chr5:133451347..133451358,+!p3@TCF7!1.15!13.00!TCF7;;chr2:43453734..43453751,-!p1@ZFP36L2!1.14!1359.12!ZFP36L2;;chr11:67007548..67007610,+!p3@KDM2A!1.14!93.79!KDM2A;;chr15:57211634..57211657,+!p5@TCF12!1.14!19.31!TCF12;;chr6:91006575..91006602,-!p2@BACH2!1.14!18.91!BACH2;;chr8:60031619..60031676,-!p1@TOX!1.13!26.99!TOX;;chr8:102218439..102218455,-!p3@ZNF706!1.13!12.61!ZNF706;;chr2:122042770..122042785,-!p1@TFCP2L1!1.13!12.61!TFCP2L1;;chr4:38665769..38665801,+!p2@KLF3!1.12!110.73!KLF3;;chr22:38597987..38598021,+!p2@MAFF!1.12!75.27!MAFF;;chr2:61108808..61108821,+!p3@REL!1.12!15.57!REL;;chr19:47616992..47617011,-!p4@ZC3H4!1.11!25.42!ZC3H4;;chr17:45810816..45810838,+!p2@TBX21!1.11!12.02!TBX21;;chr1:37940170..37940190,+!p1@ZC3H12A!1.10!143.83!ZC3H12A;;chr17:38020557..38020572,-!p4@IKZF3!1.10!11.62!IKZF3;;chr2:28616358..28616380,+!p3@FOSL2!1.09!59.11!FOSL2;;chr14:35872962..35873025,-!p3@NFKBIA!1.09!28.57!NFKBIA;;chr8:67525473..67525518,-!p1@MYBL1!1.09!26.21!MYBL1;;chr6:12009042..12009092,+!p6@HIVEP1!1.09!14.78!HIVEP1;;chr4:57522674..57522699,-!p5@HOPX!1.09!11.43!HOPX;;chr12:51158359..51158395,+!p4@ATF1!1.09!11.23!ATF1;;chr14:64971461..64971542,+!p1@ZBTB1!1.08!224.02!ZBTB1;;chr12:72056749..72056767,+!p6@THAP2!1.08!12.41!THAP2;;chr10:3827389..3827408,-!p1@KLF6!1.07!833.83!KLF6;;chr12:57914286..57914304,-!p1@DDIT3!1.07!389.33!DDIT3;;chr2:97202480..97202499,+!p1@ARID5A!1.07!109.94!ARID5A;;chr3:18487057..18487105,-!p4@SATB1!1.07!10.84!SATB1;;chr3:71542684..71542720,-!p18@FOXP1!1.07!10.84!FOXP1;;chrY:2803415..2803468,+!p1@ZFY!1.07!10.84!ZFY;;chr14:99738138..99738163,-!p1@BCL11B!1.07!10.64!BCL11B;;chr13:41593425..41593480,-!p1@ELF1!1.06!67.98!ELF1;;chr9:32550839..32550962,-!p3@TOPORS!1.06!26.40!TOPORS;;chr11:113930425..113930471,+!p1@ZBTB16!1.06!15.37!ZBTB16;;chr21:36421147..36421193,-!p10@RUNX1!1.06!10.44!RUNX1;;chr17:38020516..38020544,-!p5@IKZF3!1.06!10.44!IKZF3;;chr19:18392422..18392440,-!p1@JUND!1.05!1419.80!JUND;;chr1:59249645..59249656,-!p4@JUN!1.05!25.81!JUN;;chr17:7388010..7388017,-!p5@ZBTB4!1.05!17.54!ZBTB4;;chr7:106809470..106809481,+!p2@HBP1!1.05!14.58!HBP1;;chr16:29819579..29819591,+!p32@MAZ!1.05!10.25!MAZ;;chr16:68119324..68119364,+!p1@NFATC3!1.04!44.92!NFATC3;;chr1:91487774..91487802,-!p2@ZNF644!1.04!26.99!ZNF644;;chr9:102584159..102584174,+!p2@NR4A3!1.04!18.32!NR4A3;;chr7:50344144..50344157,+!p6@IKZF1!1.04!10.05!IKZF1;;chr8:123794038..123794056,+!p5@ZHX2!1.03!9.65!ZHX2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.02!498.29!NFKBIZ;;chr7:64838786..64838809,+!p2@ZNF92!1.02!55.37!ZNF92;;chr2:157189617..157189667,-!p4@NR4A2!1.02!9.46!NR4A2;;chr3:71179699..71179744,-!p2@FOXP1!1.01!70.93!FOXP1;;chr6:143266297..143266356,-!p1@HIVEP2!1.01!44.92!HIVEP2;;chr14:75988771..75988826,+!p1@BATF!1.01!12.41!BATF;;chr15:31619407..31619419,+!p9@KLF13!1.01!11.62!KLF13;;chr20:44600199..44600219,-!p3@ZNF335!1.00!12.41!ZNF335;;chr14:69262947..69262986,-!p3@ZFP36L1!1.00!11.03!ZFP36L1;;chr20:57757940..57757966,+!p@chr20:57757940..57757966,+!1.00!9.06!ZNF831;;chr9:102584278..102584285,+!p5@NR4A3!1.00!9.06!NR4A3;;chr11:128392085..128392232,-!p1@ETS1!0.99!302.05!ETS1;;chr2:174828545..174828644,-!p1@SP3!0.99!138.12!SP3;;chr2:145275162..145275202,-!p2@ZEB2!0.99!52.61!ZEB2;;chr21:36421535..36421610,-!p2@RUNX1!0.99!32.12!RUNX1;;chr13:74708029..74708077,-!p2@KLF12!0.99!25.61!KLF12;;chr15:60884747..60884774,-!p3@RORA!0.99!21.87!RORA;;chr5:142782823..142782854,-!p3@NR3C1!0.99!12.61!NR3C1;;chr19:18391615..18391637,-!p5@JUND!0.99!11.62!JUND;;chr4:83822199..83822239,+!p2@THAP9!0.99!10.44!THAP9;;chr7:137620684..137620711,-!p4@CREB3L2!0.99!8.87!CREB3L2;;chr7:99680193..99680204,-!p2@ZNF3!0.99!8.87!ZNF3;;chr1:151030388..151030419,+!p9@MLLT11!0.99!8.67!MLLT11;;chr1:25256175..25256228,-!p5@RUNX3!0.99!8.67!RUNX3;;chr15:31619326..31619390,+!p2@KLF13!0.98!101.08!KLF13;;chr14:90085458..90085557,-!p1@FOXN3!0.98!92.01!FOXN3;;chr6:45390300..45390335,+!p4@RUNX2!0.98!13.40!RUNX2;;chr14:75746722..75746777,+!p2@FOS!0.98!11.03!FOS;;chr4:109090075..109090095,-!p2@LEF1!0.98!8.47!LEF1;;chr19:50529028..50529040,+!p5@ZNF473!0.98!8.47!ZNF473;;chr5:172483347..172483407,+!p1@C5orf41!0.97!64.03!CREBRF;;chr19:45252008..45252024,+!p2@BCL3!0.97!27.98!BCL3;;chr8:71316428..71316459,-!p2@NCOA2!0.97!14.38!NCOA2;;chr20:52226313..52226350,-!p3@ZNF217!0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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000623;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor1.CNhs10859.11230-116C6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor1.CNhs10859.11230-116C6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor1.CNhs10859.11230-116C6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor1.CNhs10859.11230-116C6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor1.CNhs10859.11230-116C6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11230-116C6
 |is_a=EFO:0002091;;FF:0000119
 |is_obsolete=
+|library_id=CNhs10859
+|library_id_phase_based=2:CNhs10859
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11230
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.ATGTCA.11230
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11230
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.ATGTCA.11230
 |name=Natural Killer Cells, donor1
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10859,LSID702,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10010,,,
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 |rna_box=116
@@ Line 61: / Line 82: @@
 |rna_tube_id=116C6
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+|rnaseq_library_id=SRhi10010.ATGTCA
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+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 83: / Line 106: @@
 |top_motifs=RORA:4.54284170619;PAX3,7:3.87128400184;RUNX1..3:3.71473833468;CREB1:3.62516220857;ATF5_CREB3:3.50083091249;ATF4:3.42713696972;RFX2..5_RFXANK_RFXAP:3.25301354337;NFKB1_REL_RELA:2.98368455824;FOXO1,3,4:2.97329513557;FOX{D1,D2}:2.96774058542;T:2.92923002669;ELF1,2,4:2.90416625732;ETS1,2:2.74113497615;DMAP1_NCOR{1,2}_SMARC:2.65922060281;PAX2:2.59992724355;BPTF:2.56386926169;FOXN1:2.2906723776;TBX4,5:2.26163588883;RFX1:2.12691290293;TGIF1:2.11851634851;SPI1:2.11154620654;JUN:2.05658330079;FOX{F1,F2,J1}:1.90589620056;TLX2:1.80840314096;IRF1,2:1.77072984459;HMX1:1.76261447811;SPIB:1.74535098932;ATF2:1.6324684267;ATF6:1.58615782935;PITX1..3:1.40886017792;FOXP1:1.36483374814;FOX{I1,J2}:1.32814420657;NKX2-1,4:1.29923881037;HIF1A:1.2253645613;EP300:1.17991784776;FOSL2:1.16275434893;NFATC1..3:1.11604151996;FOS_FOS{B,L1}_JUN{B,D}:1.02219781072;HMGA1,2:0.967763875476;ZBTB16:0.966759448686;NANOG{mouse}:0.95500016144;BREu{core}:0.945372635986;IRF7:0.842114763137;LEF1_TCF7_TCF7L1,2:0.816278813916;PAX6:0.813257795089;BACH2:0.708037819354;IKZF2:0.696150384723;SREBF1,2:0.679652173062;FOXP3:0.667776590647;MAFB:0.667656631755;SOX2:0.659726805125;ZNF384:0.648107740381;NFIL3:0.640763281488;NFE2:0.639778752698;ELK1,4_GABP{A,B1}:0.635486765897;MYB:0.594802653735;SMAD1..7,9:0.561950372171;PAX4:0.522977413836;CDX1,2,4:0.448178264478;GATA6:0.365812077416;EGR1..3:0.349282013384;NKX6-1,2:0.330759635103;TFDP1:0.308253718498;STAT2,4,6:0.295850038061;CEBPA,B_DDIT3:0.235274466469;NFE2L1:0.18738506401;HLF:0.158961422958;RBPJ:0.14711791106;MYFfamily:0.111141622503;PDX1:0.111032405207;RREB1:0.0876750440215;HBP1_HMGB_SSRP1_UBTF:0.0861414977178;NFE2L2:0.0817217047857;NFY{A,B,C}:0.0331267686222;AHR_ARNT_ARNT2:0.0203089447346;PPARG:0.0174250194827;RXRA_VDR{dimer}:0.0120295822754;NANOG:-0.022531992828;GCM1,2:-0.110943428422;HOX{A6,A7,B6,B7}:-0.145303671584;FOXQ1:-0.221767937621;SOX5:-0.238650029298;STAT1,3:-0.24274418762;CRX:-0.244702775078;POU2F1..3:-0.329076463613;FOXL1:-0.335337834385;E2F1..5:-0.351941404592;TOPORS:-0.369867891346;GLI1..3:-0.433126127411;NRF1:-0.433921094613;AIRE:-0.434207578494;ZEB1:-0.447630929545;HOXA9_MEIS1:-0.450157459846;PBX1:-0.450483762171;ZFP161:-0.451184715643;SNAI1..3:-0.491318205558;PRRX1,2:-0.498114854138;MTE{core}:-0.513796188196;MED-1{core}:-0.517536215845;MYOD1:-0.534453168445;NKX3-1:-0.577913079392;CUX2:-0.581062184293;HSF1,2:-0.584710908721;SRF:-0.588514604228;XBP1:-0.604316252471;TAL1_TCF{3,4,12}:-0.6073801045;NFIX:-0.613113118696;HES1:-0.621327322803;PAX5:-0.642335251158;TFAP4:-0.644847746924;FOXD3:-0.648100762235;PATZ1:-0.650861953519;TFAP2B:-0.652754611785;NHLH1,2:-0.705515720092;DBP:-0.719023979973;MZF1:-0.761415166515;STAT5{A,B}:-0.765598314311;SPZ1:-0.77889311453;EVI1:-0.779799938546;HNF1A:-0.794758217689;HNF4A_NR2F1,2:-0.823075124417;SOX{8,9,10}:-0.839539787292;MTF1:-0.84203779726;NR5A1,2:-0.847074636953;NR1H4:-0.850410549119;MAZ:-0.85938291639;REST:-0.883811313835;bHLH_family:-0.895111515282;MEF2{A,B,C,D}:-0.89972933878;TFCP2:-0.908010895805;OCT4_SOX2{dimer}:-0.911938379544;GATA4:-0.912460044204;YY1:-0.944839484601;SP1:-0.987667043155;AR:-0.990852345062;LMO2:-1.00009145781;ZNF148:-1.01055227903;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01522386525;FOXA2:-1.01740249685;LHX3,4:-1.02269290169;TFAP2{A,C}:-1.02788129312;ZBTB6:-1.0455277388;ALX4:-1.07670335348;ESRRA:-1.12832431452;FOXM1:-1.13953455585;HIC1:-1.18437005189;ZNF143:-1.20555918128;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.22976466061;ZNF423:-1.25486634992;ZNF238:-1.2746573615;NKX2-2,8:-1.2977149184;MYBL2:-1.3049857755;ZIC1..3:-1.33400263286;VSX1,2:-1.35562411238;ALX1:-1.36791881712;POU5F1:-1.37448755473;TBP:-1.376184528;GFI1:-1.3874997917;PAX8:-1.47210020173;XCPE1{core}:-1.48414775416;RXR{A,B,G}:-1.48633455545;SOX17:-1.58363368953;HOX{A5,B5}:-1.586818244;TP53:-1.59178712531;CDC5L:-1.6512822012;GTF2I:-1.73812675455;GTF2A1,2:-1.80524008862;GFI1B:-1.80774554157;EN1,2:-1.8630579372;TEAD1:-1.88908533263;ARID5B:-1.88913968363;NKX2-3_NKX2-5:-1.88995981251;HAND1,2:-1.91527620615;TLX1..3_NFIC{dimer}:-1.91581302623;ESR1:-1.95678197733;GZF1:-1.95779883154;POU1F1:-1.9578916231;UFEwm:-1.96608240252;PRDM1:-2.02268532768;TEF:-2.02479109574;POU6F1:-2.04696487437;HOX{A4,D4}:-2.15369130756;POU3F1..4:-2.18809074293;IKZF1:-2.38086878413;EBF1:-2.40546640124;KLF4:-2.46571274922;ADNP_IRX_SIX_ZHX:-2.47400756013;NKX3-2:-2.63544542823;PAX1,9:-2.72343148039;NR6A1:-2.72551060221;NR3C1:-2.91884518532;ONECUT1,2:-3.07519189978
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11230-116C6;search_select_hide=table117:FF:11230-116C6
 }}

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FF:11230-116C6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:26, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0