FF:11248-116E6: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005107 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005107 | ||
|HumanCAGEScanFiles=NCig10045;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Anulus%2520Pulposus%2520Cell%252c%2520donor1.NCig10045.11248-116E6.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Anulus%2520Pulposus%2520Cell%252c%2520donor1.NCig10045.11248-116E6.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Anulus%2520Pulposus%2520Cell%252c%2520donor1.NCig10045.11248-116E6.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Anulus%2520Pulposus%2520Cell%252c%2520donor1.NCig10045.11248-116E6.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008110;DRR008982;DRZ000407;DRZ001792;DRZ011757;DRZ013142 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037033;DRR041399;DRZ007041 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0002418,UBERON:0000479,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004905,UBERON:0011135,UBERON:0000075,UBERON:0002216,UBERON:0004765,UBERON:0011134,UBERON:0002209,UBERON:0002213,UBERON:0000982,UBERON:0004755,UBERON:0006444,UBERON:0001995,UBERON:0007844,UBERON:0004715,UBERON:0002204,UBERON:0001434,UBERON:0004770,UBERON:0011138,UBERON:0001130,UBERON:0001066,UBERON:0001468 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002602 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000192 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10876.11248-116E6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10876.11248-116E6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10876.11248-116E6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10876.11248-116E6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10876.11248-116E6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11248-116E6 | |id=FF:11248-116E6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000192 | ||
|is_obsolete= | |||
|library_id=CNhs10876 | |||
|library_id_phase_based=2:CNhs10876 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11248 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.TTAGGC.11248 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11248 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.TTAGGC.11248 | |||
|name=Anulus Pulposus Cell, donor1 | |name=Anulus Pulposus Cell, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=NCig10045,,, | |profile_cagescan=NCig10045,,, | ||
|profile_hcage=CNhs10876,LSID703,release008,COMPLETED | |profile_hcage=CNhs10876,LSID703,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.110678428277012,0,-0.178781358087472,-0.213837471600121,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302510502621046,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0978737469067037,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.298881626226296,0,0,0,-0.0463163366360144,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.137132177953643,0,0,0,0,0.0506760246065907,0,0,0,0,0,0,0.0506760246065907,0,0,0,-0.103576674140745,0,0,0,-0.19351904510347,-0.00296347693129348,0,0.137132177953643,0,0,0.0390968267159362,-0.0424252606822767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261964228788373,0.137132177953643,0,0,-0.0285589446518912,0.0561624977173218,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=SC4815 | |rna_catalog_number=SC4815 | ||
| Line 54: | Line 80: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.16E+08 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.TTAGGC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.38365912356041e-231!GO:0005737;cytoplasm;1.46014838490144e-189!GO:0043231;intracellular membrane-bound organelle;2.4914341160681e-182!GO:0043227;membrane-bound organelle;5.53506978918144e-182!GO:0043226;organelle;1.6475192054868e-181!GO:0043229;intracellular organelle;3.25596388359751e-181!GO:0044444;cytoplasmic part;6.08735854754863e-144!GO:0044422;organelle part;5.86294790987631e-122!GO:0044446;intracellular organelle part;1.28679647394288e-120!GO:0044237;cellular metabolic process;5.54712132256722e-89!GO:0044238;primary metabolic process;1.29950877627631e-88!GO:0032991;macromolecular complex;6.76723691133999e-85!GO:0030529;ribonucleoprotein complex;7.01462671195748e-83!GO:0043170;macromolecule metabolic process;9.0898785734705e-78!GO:0005739;mitochondrion;6.64148542461672e-72!GO:0005515;protein binding;3.93621797642876e-69!GO:0043233;organelle lumen;1.36728716768536e-66!GO:0031974;membrane-enclosed lumen;1.36728716768536e-66!GO:0005634;nucleus;1.12129354364464e-63!GO:0003723;RNA binding;5.61014529765445e-61!GO:0044428;nuclear part;6.4574012202843e-59!GO:0005840;ribosome;5.80106421028764e-54!GO:0031090;organelle membrane;2.57563268756509e-51!GO:0006412;translation;1.49443120751405e-47!GO:0003735;structural constituent of ribosome;6.48698431475368e-47!GO:0044429;mitochondrial part;8.35483281872993e-47!GO:0019538;protein metabolic process;6.52933896753796e-46!GO:0010467;gene expression;3.44975923511265e-44!GO:0009058;biosynthetic process;9.03460064139774e-44!GO:0015031;protein transport;1.2609280845217e-43!GO:0033036;macromolecule localization;1.94733330845875e-43!GO:0016043;cellular component organization and biogenesis;1.12920506335214e-42!GO:0044260;cellular macromolecule metabolic process;6.05801219600655e-42!GO:0006396;RNA processing;7.72906535716501e-41!GO:0045184;establishment of protein localization;9.88715645898169e-41!GO:0008104;protein localization;1.06752187181004e-40!GO:0044267;cellular protein metabolic process;1.35483591369463e-40!GO:0043234;protein complex;1.3962202824307e-40!GO:0033279;ribosomal subunit;1.51364812444823e-40!GO:0005829;cytosol;2.55149629503911e-40!GO:0043283;biopolymer metabolic process;4.77839568371928e-40!GO:0009059;macromolecule biosynthetic process;5.63744953888303e-40!GO:0044249;cellular biosynthetic process;1.57590814471236e-37!GO:0031981;nuclear lumen;4.88066274919713e-37!GO:0031967;organelle envelope;1.4203323355343e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.0869260844838e-36!GO:0031975;envelope;3.40756178750541e-36!GO:0016071;mRNA metabolic process;1.62506570854922e-34!GO:0008380;RNA splicing;7.34786224340806e-32!GO:0005740;mitochondrial envelope;7.36912898125324e-30!GO:0006397;mRNA processing;1.16665577180412e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.35825858017541e-29!GO:0046907;intracellular transport;2.20230983958617e-29!GO:0031966;mitochondrial membrane;2.84666437915778e-28!GO:0006886;intracellular protein transport;9.01621826024861e-28!GO:0065003;macromolecular complex assembly;2.59670663754531e-27!GO:0019866;organelle inner membrane;6.65664196478208e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.93674713503239e-26!GO:0005743;mitochondrial inner membrane;1.13244759617432e-25!GO:0022607;cellular component assembly;6.53976259178419e-24!GO:0006996;organelle organization and biogenesis;1.66990324433728e-23!GO:0005654;nucleoplasm;4.62653640937734e-23!GO:0006119;oxidative phosphorylation;9.64816584235454e-23!GO:0044445;cytosolic part;1.17448255077479e-22!GO:0005681;spliceosome;3.95098668974601e-22!GO:0043228;non-membrane-bound organelle;7.16531578320014e-22!GO:0043232;intracellular non-membrane-bound organelle;7.16531578320014e-22!GO:0003676;nucleic acid binding;8.64315658750763e-22!GO:0015935;small ribosomal subunit;1.08067058240299e-21!GO:0006457;protein folding;2.51539532624486e-21!GO:0031980;mitochondrial lumen;3.63359070373646e-21!GO:0005759;mitochondrial matrix;3.63359070373646e-21!GO:0005783;endoplasmic reticulum;4.16380708225743e-21!GO:0044455;mitochondrial membrane part;2.49490300520591e-20!GO:0015934;large ribosomal subunit;5.94344918708762e-20!GO:0012505;endomembrane system;1.33511647421257e-19!GO:0044451;nucleoplasm part;1.39426890322506e-19!GO:0016070;RNA metabolic process;1.81135974774934e-19!GO:0048770;pigment granule;1.00707365902899e-18!GO:0042470;melanosome;1.00707365902899e-18!GO:0051649;establishment of cellular localization;1.46742070299296e-18!GO:0051641;cellular localization;2.68157229252967e-18!GO:0044432;endoplasmic reticulum part;8.62738065962258e-18!GO:0008134;transcription factor binding;1.05707261838971e-17!GO:0005746;mitochondrial respiratory chain;1.19327501745001e-17!GO:0051186;cofactor metabolic process;1.33268527710557e-17!GO:0022618;protein-RNA complex assembly;2.28772979296581e-17!GO:0005794;Golgi apparatus;7.13159709482971e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.20984858823254e-16!GO:0006259;DNA metabolic process;3.91894050272397e-16!GO:0016874;ligase activity;4.83334862033983e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.01642226762746e-16!GO:0016462;pyrophosphatase activity;9.10293106388697e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.02652640790765e-15!GO:0006512;ubiquitin cycle;1.06648179153786e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.23960723198246e-15!GO:0005761;mitochondrial ribosome;2.01311263933407e-15!GO:0000313;organellar ribosome;2.01311263933407e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.34096618549432e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.89629917338842e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.32879356660232e-15!GO:0003954;NADH dehydrogenase activity;3.32879356660232e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.32879356660232e-15!GO:0044265;cellular macromolecule catabolic process;4.08277200201193e-15!GO:0006511;ubiquitin-dependent protein catabolic process;4.93164247108406e-15!GO:0019941;modification-dependent protein catabolic process;4.95319118722087e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.95319118722087e-15!GO:0044257;cellular protein catabolic process;6.9340417513392e-15!GO:0017111;nucleoside-triphosphatase activity;1.12538621275882e-14!GO:0043285;biopolymer catabolic process;1.17553428339144e-14!GO:0008135;translation factor activity, nucleic acid binding;1.51639030524463e-14!GO:0006605;protein targeting;1.53671621000686e-14!GO:0005730;nucleolus;2.08319087306134e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.63464249454752e-14!GO:0044248;cellular catabolic process;5.35388370587327e-14!GO:0006732;coenzyme metabolic process;7.90049290349826e-14!GO:0051082;unfolded protein binding;8.48844041441157e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.54315500340367e-14!GO:0042775;organelle ATP synthesis coupled electron transport;9.6835776024686e-14!GO:0042773;ATP synthesis coupled electron transport;9.6835776024686e-14!GO:0016192;vesicle-mediated transport;1.43596407645435e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.51045203314522e-13!GO:0045271;respiratory chain complex I;1.51045203314522e-13!GO:0005747;mitochondrial respiratory chain complex I;1.51045203314522e-13!GO:0009057;macromolecule catabolic process;2.24247775611105e-13!GO:0030163;protein catabolic process;3.34082765710265e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.92746749786784e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.41265528397335e-13!GO:0005789;endoplasmic reticulum membrane;6.60753934907404e-13!GO:0000166;nucleotide binding;6.74666103749455e-13!GO:0048193;Golgi vesicle transport;9.63587376408342e-13!GO:0005793;ER-Golgi intermediate compartment;2.14255437061575e-12!GO:0003743;translation initiation factor activity;9.59805806667496e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.21529054969047e-11!GO:0000375;RNA splicing, via transesterification reactions;1.21529054969047e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.21529054969047e-11!GO:0006413;translational initiation;2.99899452133878e-11!GO:0009055;electron carrier activity;5.49004264549354e-11!GO:0003712;transcription cofactor activity;1.11145779853141e-10!GO:0016491;oxidoreductase activity;1.52917002624833e-10!GO:0043412;biopolymer modification;2.6720480285564e-10!GO:0009259;ribonucleotide metabolic process;3.48769201344246e-10!GO:0006163;purine nucleotide metabolic process;3.8774387345196e-10!GO:0006446;regulation of translational initiation;4.54288760033203e-10!GO:0009150;purine ribonucleotide metabolic process;4.81210860487887e-10!GO:0050794;regulation of cellular process;6.05332864776717e-10!GO:0007049;cell cycle;6.40729518256177e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.00188551725641e-09!GO:0042254;ribosome biogenesis and assembly;1.27549777152293e-09!GO:0045333;cellular respiration;1.28835781120288e-09!GO:0009060;aerobic respiration;1.35753357029729e-09!GO:0012501;programmed cell death;1.35753357029729e-09!GO:0006366;transcription from RNA polymerase II promoter;2.67693075265119e-09!GO:0006915;apoptosis;2.69819503481116e-09!GO:0006164;purine nucleotide biosynthetic process;2.83729902795835e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.45064325962817e-09!GO:0016604;nuclear body;3.7090664242558e-09!GO:0006464;protein modification process;3.77402984948731e-09!GO:0008565;protein transporter activity;3.97795379979319e-09!GO:0006913;nucleocytoplasmic transport;5.16752607886673e-09!GO:0009260;ribonucleotide biosynthetic process;5.77154007000704e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.17617361493377e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.12175286003751e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.12850132852957e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.12850132852957e-08!GO:0008219;cell death;1.12850132852957e-08!GO:0016265;death;1.12850132852957e-08!GO:0006974;response to DNA damage stimulus;1.16183838834157e-08!GO:0009141;nucleoside triphosphate metabolic process;1.24226849231077e-08!GO:0048523;negative regulation of cellular process;1.26891430712134e-08!GO:0017038;protein import;1.29219279712862e-08!GO:0051169;nuclear transport;1.32921325783342e-08!GO:0009056;catabolic process;1.35710039674703e-08!GO:0051188;cofactor biosynthetic process;1.39372163410988e-08!GO:0005768;endosome;1.4401165312299e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.47055441520189e-08!GO:0017076;purine nucleotide binding;1.69993181678274e-08!GO:0008639;small protein conjugating enzyme activity;1.88717979155293e-08!GO:0015986;ATP synthesis coupled proton transport;2.79375248807791e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.79375248807791e-08!GO:0004842;ubiquitin-protein ligase activity;3.20607286995901e-08!GO:0032553;ribonucleotide binding;3.56996913728718e-08!GO:0032555;purine ribonucleotide binding;3.56996913728718e-08!GO:0019787;small conjugating protein ligase activity;3.68774382676497e-08!GO:0005635;nuclear envelope;3.71764223390227e-08!GO:0030120;vesicle coat;5.5601747588513e-08!GO:0030662;coated vesicle membrane;5.5601747588513e-08!GO:0006099;tricarboxylic acid cycle;5.5601747588513e-08!GO:0046356;acetyl-CoA catabolic process;5.5601747588513e-08!GO:0031965;nuclear membrane;6.65303116934076e-08!GO:0046034;ATP metabolic process;6.65303116934076e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;6.69383191892192e-08!GO:0019829;cation-transporting ATPase activity;7.2910955354732e-08!GO:0006091;generation of precursor metabolites and energy;8.10555912809479e-08!GO:0009142;nucleoside triphosphate biosynthetic process;9.10341300086604e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.10341300086604e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.10341300086604e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.10341300086604e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.02387746293855e-07!GO:0048475;coated membrane;1.03343921197445e-07!GO:0030117;membrane coat;1.03343921197445e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.11313582096036e-07!GO:0006461;protein complex assembly;1.11640628859093e-07!GO:0003924;GTPase activity;1.1516751198469e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.30635826754575e-07!GO:0016607;nuclear speck;1.44116863127452e-07!GO:0051187;cofactor catabolic process;1.49981544316538e-07!GO:0050789;regulation of biological process;1.63280162733247e-07!GO:0042623;ATPase activity, coupled;1.9063915691741e-07!GO:0006323;DNA packaging;2.10612892011501e-07!GO:0051246;regulation of protein metabolic process;2.15095943980789e-07!GO:0009109;coenzyme catabolic process;2.27546083149624e-07!GO:0051276;chromosome organization and biogenesis;2.65327373153676e-07!GO:0043687;post-translational protein modification;2.66294541129445e-07!GO:0006084;acetyl-CoA metabolic process;2.70821349793597e-07!GO:0009117;nucleotide metabolic process;2.82668624682267e-07!GO:0015980;energy derivation by oxidation of organic compounds;3.27809248530458e-07!GO:0022402;cell cycle process;3.47048093207438e-07!GO:0006399;tRNA metabolic process;3.82517427321103e-07!GO:0044431;Golgi apparatus part;3.96578684016636e-07!GO:0044453;nuclear membrane part;4.64005308810298e-07!GO:0006754;ATP biosynthetic process;4.89514919627784e-07!GO:0006753;nucleoside phosphate metabolic process;4.89514919627784e-07!GO:0048519;negative regulation of biological process;5.45228313509825e-07!GO:0016887;ATPase activity;5.7898804312066e-07!GO:0016881;acid-amino acid ligase activity;6.17883254801013e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.19071735573762e-07!GO:0009108;coenzyme biosynthetic process;7.28460142867324e-07!GO:0016853;isomerase activity;7.84590865427902e-07!GO:0003713;transcription coactivator activity;7.96984635606333e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.23022565781357e-07!GO:0016563;transcription activator activity;8.96728418988077e-07!GO:0008654;phospholipid biosynthetic process;9.05982979709827e-07!GO:0008026;ATP-dependent helicase activity;9.10532818328391e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.07024007077351e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.14015266098929e-06!GO:0000278;mitotic cell cycle;1.14571329134711e-06!GO:0031988;membrane-bound vesicle;1.16331094280207e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.24323981081954e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.24323981081954e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.24323981081954e-06!GO:0043566;structure-specific DNA binding;1.35247474870682e-06!GO:0005773;vacuole;1.40797477206216e-06!GO:0004386;helicase activity;1.41641398244952e-06!GO:0065004;protein-DNA complex assembly;1.42847711001028e-06!GO:0019222;regulation of metabolic process;1.50094992104743e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.54843004189157e-06!GO:0006281;DNA repair;1.6228544149772e-06!GO:0044440;endosomal part;1.72230192742176e-06!GO:0010008;endosome membrane;1.72230192742176e-06!GO:0043038;amino acid activation;1.74331906629254e-06!GO:0006418;tRNA aminoacylation for protein translation;1.74331906629254e-06!GO:0043039;tRNA aminoacylation;1.74331906629254e-06!GO:0005788;endoplasmic reticulum lumen;1.7858969401174e-06!GO:0031982;vesicle;1.83021642112641e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.99468252487011e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.01016203291596e-06!GO:0031410;cytoplasmic vesicle;2.01930504236581e-06!GO:0000074;regulation of progression through cell cycle;2.18911194618847e-06!GO:0051726;regulation of cell cycle;2.34371894402132e-06!GO:0009719;response to endogenous stimulus;2.36213458990545e-06!GO:0031324;negative regulation of cellular metabolic process;2.39364252410995e-06!GO:0016859;cis-trans isomerase activity;2.39364252410995e-06!GO:0045259;proton-transporting ATP synthase complex;2.4743555043288e-06!GO:0005770;late endosome;2.5309917751582e-06!GO:0006364;rRNA processing;2.81763796604267e-06!GO:0042981;regulation of apoptosis;2.8610787234609e-06!GO:0043067;regulation of programmed cell death;3.82662485413066e-06!GO:0000151;ubiquitin ligase complex;3.91790600963707e-06!GO:0016072;rRNA metabolic process;4.20522254438844e-06!GO:0065002;intracellular protein transport across a membrane;4.27963697049536e-06!GO:0051170;nuclear import;4.33113325442495e-06!GO:0005667;transcription factor complex;4.5692765476294e-06!GO:0030554;adenyl nucleotide binding;5.57114329200523e-06!GO:0005798;Golgi-associated vesicle;5.8726401682091e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.20377394849786e-06!GO:0006606;protein import into nucleus;6.42899748008488e-06!GO:0007005;mitochondrion organization and biogenesis;6.46326200322968e-06!GO:0005524;ATP binding;6.68236132536878e-06!GO:0004298;threonine endopeptidase activity;7.22516100136896e-06!GO:0003697;single-stranded DNA binding;8.39107023702254e-06!GO:0000323;lytic vacuole;8.39107023702254e-06!GO:0005764;lysosome;8.39107023702254e-06!GO:0032446;protein modification by small protein conjugation;8.50980931820075e-06!GO:0008361;regulation of cell size;8.52216959369392e-06!GO:0032559;adenyl ribonucleotide binding;8.98570433404882e-06!GO:0000245;spliceosome assembly;9.25870690546808e-06!GO:0006613;cotranslational protein targeting to membrane;9.98229283547994e-06!GO:0016049;cell growth;1.08494984086211e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.14934616925342e-05!GO:0005762;mitochondrial large ribosomal subunit;1.15878278651148e-05!GO:0000315;organellar large ribosomal subunit;1.15878278651148e-05!GO:0030133;transport vesicle;1.18216645241344e-05!GO:0031252;leading edge;1.1916958222121e-05!GO:0043069;negative regulation of programmed cell death;1.22416317397104e-05!GO:0009892;negative regulation of metabolic process;1.23811517948697e-05!GO:0016564;transcription repressor activity;1.32942909318249e-05!GO:0005643;nuclear pore;1.34329989086222e-05!GO:0043066;negative regulation of apoptosis;1.42827463715071e-05!GO:0016567;protein ubiquitination;1.47221302600185e-05!GO:0045786;negative regulation of progression through cell cycle;1.57914561462133e-05!GO:0019867;outer membrane;1.81236256383819e-05!GO:0006333;chromatin assembly or disassembly;2.15895207194239e-05!GO:0016568;chromatin modification;2.29497900024895e-05!GO:0006752;group transfer coenzyme metabolic process;2.32402221008761e-05!GO:0005694;chromosome;2.37118180932418e-05!GO:0006916;anti-apoptosis;2.71712468016069e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.82329302156976e-05!GO:0031968;organelle outer membrane;2.94595966747534e-05!GO:0001558;regulation of cell growth;2.95699443817771e-05!GO:0019843;rRNA binding;3.05121251855139e-05!GO:0000139;Golgi membrane;3.05121251855139e-05!GO:0016481;negative regulation of transcription;3.08691329155281e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.38197844293701e-05!GO:0043021;ribonucleoprotein binding;3.43529394328737e-05!GO:0008610;lipid biosynthetic process;3.56422034015616e-05!GO:0016126;sterol biosynthetic process;3.96503343889463e-05!GO:0005525;GTP binding;4.09905501139489e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;4.31252324574029e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.56079026242623e-05!GO:0016787;hydrolase activity;5.53114597537956e-05!GO:0000314;organellar small ribosomal subunit;5.61884984333193e-05!GO:0005763;mitochondrial small ribosomal subunit;5.61884984333193e-05!GO:0030867;rough endoplasmic reticulum membrane;5.67036184129644e-05!GO:0050657;nucleic acid transport;5.85444098194475e-05!GO:0051236;establishment of RNA localization;5.85444098194475e-05!GO:0050658;RNA transport;5.85444098194475e-05!GO:0005769;early endosome;6.22268353044225e-05!GO:0051427;hormone receptor binding;6.34587349792108e-05!GO:0005741;mitochondrial outer membrane;6.7129012445593e-05!GO:0005905;coated pit;7.2005643492709e-05!GO:0046474;glycerophospholipid biosynthetic process;7.88922677067224e-05!GO:0006403;RNA localization;8.29000364068783e-05!GO:0046930;pore complex;0.000101156106090754!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000103975766155461!GO:0045454;cell redox homeostasis;0.000117222585541986!GO:0003724;RNA helicase activity;0.000121018566786048!GO:0035257;nuclear hormone receptor binding;0.000135562747259259!GO:0044262;cellular carbohydrate metabolic process;0.000149273379614007!GO:0006695;cholesterol biosynthetic process;0.000150222303914087!GO:0065007;biological regulation;0.000151389319388637!GO:0000785;chromatin;0.000188452126976088!GO:0003714;transcription corepressor activity;0.000190497518786754!GO:0051789;response to protein stimulus;0.000192497963963061!GO:0006986;response to unfolded protein;0.000192497963963061!GO:0044427;chromosomal part;0.00021150401149721!GO:0033116;ER-Golgi intermediate compartment membrane;0.000214040428848547!GO:0032561;guanyl ribonucleotide binding;0.000216913831883217!GO:0019001;guanyl nucleotide binding;0.000216913831883217!GO:0019899;enzyme binding;0.000248019877566142!GO:0046467;membrane lipid biosynthetic process;0.000281500065917055!GO:0006260;DNA replication;0.000356655374286893!GO:0016740;transferase activity;0.000361860074451076!GO:0031323;regulation of cellular metabolic process;0.0003664093378553!GO:0008250;oligosaccharyl transferase complex;0.000367931989220215!GO:0030036;actin cytoskeleton organization and biogenesis;0.000373003763256829!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00044289061352354!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000448052399629908!GO:0004576;oligosaccharyl transferase activity;0.000475989519301309!GO:0006334;nucleosome assembly;0.000477436083590873!GO:0005791;rough endoplasmic reticulum;0.000493081598349538!GO:0030663;COPI coated vesicle membrane;0.000495460441340978!GO:0030126;COPI vesicle coat;0.000495460441340978!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00051031719291678!GO:0009165;nucleotide biosynthetic process;0.000533809152236814!GO:0016779;nucleotidyltransferase activity;0.00055110829606454!GO:0006350;transcription;0.000562004577255905!GO:0005885;Arp2/3 protein complex;0.00058237229930518!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.000610586915478844!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000619032796542449!GO:0006612;protein targeting to membrane;0.000630066131552079!GO:0016044;membrane organization and biogenesis;0.000634130538195919!GO:0005048;signal sequence binding;0.000640850274568907!GO:0031497;chromatin assembly;0.000640850274568907!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000643877965467072!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000705139763371832!GO:0040008;regulation of growth;0.000733306170548339!GO:0043623;cellular protein complex assembly;0.000735791462230217!GO:0051920;peroxiredoxin activity;0.00074130398026967!GO:0006793;phosphorus metabolic process;0.000745638391201901!GO:0006796;phosphate metabolic process;0.000745638391201901!GO:0015630;microtubule cytoskeleton;0.000761156781072624!GO:0005813;centrosome;0.000800376913209038!GO:0050662;coenzyme binding;0.000823508473615609!GO:0000087;M phase of mitotic cell cycle;0.000857894857709182!GO:0051028;mRNA transport;0.000870077454557363!GO:0048522;positive regulation of cellular process;0.000876410050964089!GO:0016408;C-acyltransferase activity;0.000887356214452365!GO:0003729;mRNA binding;0.000906101017273056!GO:0006414;translational elongation;0.000935134638763662!GO:0051287;NAD binding;0.000964367476708795!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000975660664826545!GO:0007067;mitosis;0.00100949085227394!GO:0007243;protein kinase cascade;0.0010354533646754!GO:0046489;phosphoinositide biosynthetic process;0.0011884710147828!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0011956492610123!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0011956492610123!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0011956492610123!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0012093948029377!GO:0010468;regulation of gene expression;0.00123328852547168!GO:0018196;peptidyl-asparagine modification;0.00139390001682222!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00139390001682222!GO:0030137;COPI-coated vesicle;0.00142282279092735!GO:0003690;double-stranded DNA binding;0.00144046357032691!GO:0043284;biopolymer biosynthetic process;0.00146859854248485!GO:0045892;negative regulation of transcription, DNA-dependent;0.00148610663342425!GO:0030118;clathrin coat;0.00150292597341294!GO:0003899;DNA-directed RNA polymerase activity;0.00151075070952935!GO:0043488;regulation of mRNA stability;0.00153364066116104!GO:0043487;regulation of RNA stability;0.00153364066116104!GO:0005815;microtubule organizing center;0.00160945178525713!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0016720349732837!GO:0008186;RNA-dependent ATPase activity;0.00182697172244747!GO:0022403;cell cycle phase;0.00187536857324785!GO:0030027;lamellipodium;0.00192942172498735!GO:0043681;protein import into mitochondrion;0.00197840583910971!GO:0051252;regulation of RNA metabolic process;0.00217008136326069!GO:0048500;signal recognition particle;0.00233967222481974!GO:0030658;transport vesicle membrane;0.0023549339593162!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00256022493600293!GO:0030029;actin filament-based process;0.00272362047797664!GO:0006118;electron transport;0.00289996652775206!GO:0004177;aminopeptidase activity;0.00295414714480327!GO:0019752;carboxylic acid metabolic process;0.0030011519764256!GO:0031072;heat shock protein binding;0.00307199056093382!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00322074441752952!GO:0015399;primary active transmembrane transporter activity;0.00322074441752952!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00327118415027945!GO:0006979;response to oxidative stress;0.00328318562442314!GO:0006082;organic acid metabolic process;0.00338057375252071!GO:0006891;intra-Golgi vesicle-mediated transport;0.00346472037238219!GO:0006626;protein targeting to mitochondrion;0.00358570490555988!GO:0016310;phosphorylation;0.00359465478804962!GO:0006650;glycerophospholipid metabolic process;0.00363688630142662!GO:0030521;androgen receptor signaling pathway;0.00371939660387162!GO:0065009;regulation of a molecular function;0.00374616993362734!GO:0008180;signalosome;0.00374933674768216!GO:0006352;transcription initiation;0.0038437766385541!GO:0030132;clathrin coat of coated pit;0.00389679885806271!GO:0006509;membrane protein ectodomain proteolysis;0.003911305606887!GO:0033619;membrane protein proteolysis;0.003911305606887!GO:0005869;dynactin complex;0.00407673848367986!GO:0031902;late endosome membrane;0.00412698791661014!GO:0007264;small GTPase mediated signal transduction;0.00427320791905432!GO:0051329;interphase of mitotic cell cycle;0.00433066893140558!GO:0051128;regulation of cellular component organization and biogenesis;0.00441882927385729!GO:0030176;integral to endoplasmic reticulum membrane;0.00453105438400299!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00466739699289435!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00469367573217359!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00469367573217359!GO:0004004;ATP-dependent RNA helicase activity;0.00473414791615477!GO:0008154;actin polymerization and/or depolymerization;0.00479353765663165!GO:0030119;AP-type membrane coat adaptor complex;0.00479616591666874!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00479616591666874!GO:0015002;heme-copper terminal oxidase activity;0.00479616591666874!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00479616591666874!GO:0004129;cytochrome-c oxidase activity;0.00479616591666874!GO:0048471;perinuclear region of cytoplasm;0.004833908120244!GO:0030041;actin filament polymerization;0.00485938045610653!GO:0016363;nuclear matrix;0.00497952589790408!GO:0006383;transcription from RNA polymerase III promoter;0.0050795965390141!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00516059941859654!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00535535637962579!GO:0045047;protein targeting to ER;0.00535535637962579!GO:0045893;positive regulation of transcription, DNA-dependent;0.00565298288790032!GO:0051539;4 iron, 4 sulfur cluster binding;0.00571980083679756!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0057749239011108!GO:0008312;7S RNA binding;0.0057868477893357!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00598490583563673!GO:0042158;lipoprotein biosynthetic process;0.00609604155337!GO:0015992;proton transport;0.00616567126618244!GO:0045941;positive regulation of transcription;0.00626252086738714!GO:0051101;regulation of DNA binding;0.00651350198209053!GO:0051087;chaperone binding;0.0065335440425823!GO:0008092;cytoskeletal protein binding;0.00682357300987983!GO:0030660;Golgi-associated vesicle membrane;0.00700233038875108!GO:0007050;cell cycle arrest;0.00706025962694309!GO:0030880;RNA polymerase complex;0.00709670352648741!GO:0006402;mRNA catabolic process;0.0071295227000796!GO:0006818;hydrogen transport;0.00718080836091509!GO:0051325;interphase;0.00737216005519274!GO:0030131;clathrin adaptor complex;0.00740181588457081!GO:0006497;protein amino acid lipidation;0.00773971486017885!GO:0022890;inorganic cation transmembrane transporter activity;0.00781323092855095!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00806060915052724!GO:0048037;cofactor binding;0.00853258261950447!GO:0030134;ER to Golgi transport vesicle;0.00863062696852157!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00886785518720161!GO:0006289;nucleotide-excision repair;0.00897476174100586!GO:0048487;beta-tubulin binding;0.00921446049647026!GO:0046483;heterocycle metabolic process;0.00934519019901264!GO:0043022;ribosome binding;0.00957447228599276!GO:0005774;vacuolar membrane;0.00957884406919429!GO:0030518;steroid hormone receptor signaling pathway;0.00958128860597498!GO:0006740;NADPH regeneration;0.00965433121707917!GO:0006098;pentose-phosphate shunt;0.00965433121707917!GO:0007010;cytoskeleton organization and biogenesis;0.00987353730740547!GO:0001726;ruffle;0.0098941734175081!GO:0003702;RNA polymerase II transcription factor activity;0.00992970015058953!GO:0032774;RNA biosynthetic process;0.0102491189740252!GO:0006733;oxidoreduction coenzyme metabolic process;0.010281517063178!GO:0031901;early endosome membrane;0.0103950940099721!GO:0003711;transcription elongation regulator activity;0.0104609056091685!GO:0051301;cell division;0.0104789171693517!GO:0016251;general RNA polymerase II transcription factor activity;0.0105271292263755!GO:0006506;GPI anchor biosynthetic process;0.0107102843657008!GO:0006351;transcription, DNA-dependent;0.0109632537837887!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0109897558034021!GO:0033043;regulation of organelle organization and biogenesis;0.0109897558034021!GO:0030659;cytoplasmic vesicle membrane;0.0110761775671931!GO:0045045;secretory pathway;0.0110761775671931!GO:0031625;ubiquitin protein ligase binding;0.0111077961226592!GO:0017166;vinculin binding;0.0113838707080811!GO:0007006;mitochondrial membrane organization and biogenesis;0.011469903209344!GO:0030125;clathrin vesicle coat;0.0118000434143512!GO:0030665;clathrin coated vesicle membrane;0.0118000434143512!GO:0033673;negative regulation of kinase activity;0.0121823723120718!GO:0006469;negative regulation of protein kinase activity;0.0121823723120718!GO:0006505;GPI anchor metabolic process;0.0124482983513269!GO:0000339;RNA cap binding;0.0126250231493085!GO:0007040;lysosome organization and biogenesis;0.0129116881049081!GO:0005581;collagen;0.0129225763518731!GO:0031124;mRNA 3'-end processing;0.0130962824299523!GO:0009081;branched chain family amino acid metabolic process;0.0131701332393996!GO:0035258;steroid hormone receptor binding;0.0132582578382088!GO:0016860;intramolecular oxidoreductase activity;0.0132582578382088!GO:0000059;protein import into nucleus, docking;0.013275253733556!GO:0007033;vacuole organization and biogenesis;0.0133191614417726!GO:0044255;cellular lipid metabolic process;0.0135337601327519!GO:0006595;polyamine metabolic process;0.0135337601327519!GO:0030127;COPII vesicle coat;0.0138880717238491!GO:0012507;ER to Golgi transport vesicle membrane;0.0138880717238491!GO:0006769;nicotinamide metabolic process;0.0138999377264356!GO:0006897;endocytosis;0.0140765006589228!GO:0010324;membrane invagination;0.0140765006589228!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.014331776583026!GO:0000428;DNA-directed RNA polymerase complex;0.014331776583026!GO:0008139;nuclear localization sequence binding;0.0144305439997846!GO:0009967;positive regulation of signal transduction;0.0144305439997846!GO:0051168;nuclear export;0.0148077275400123!GO:0030199;collagen fibril organization;0.0151663065867273!GO:0006643;membrane lipid metabolic process;0.0160207777595275!GO:0006778;porphyrin metabolic process;0.0163742198149564!GO:0033013;tetrapyrrole metabolic process;0.0163742198149564!GO:0003746;translation elongation factor activity;0.0164792796814331!GO:0044433;cytoplasmic vesicle part;0.0167945084702289!GO:0006839;mitochondrial transport;0.0171706687086482!GO:0031529;ruffle organization and biogenesis;0.0172344109169218!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0173830978215435!GO:0051540;metal cluster binding;0.0178610887761951!GO:0051536;iron-sulfur cluster binding;0.0178610887761951!GO:0005832;chaperonin-containing T-complex;0.0178610887761951!GO:0045792;negative regulation of cell size;0.0178610887761951!GO:0051348;negative regulation of transferase activity;0.0180811600749388!GO:0007021;tubulin folding;0.0183224263455737!GO:0009303;rRNA transcription;0.018757826984225!GO:0045449;regulation of transcription;0.0189077155857638!GO:0043492;ATPase activity, coupled to movement of substances;0.0189339815489348!GO:0016407;acetyltransferase activity;0.0191753395554018!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0191753395554018!GO:0005684;U2-dependent spliceosome;0.0192464121720332!GO:0030833;regulation of actin filament polymerization;0.0194912870793506!GO:0042802;identical protein binding;0.0197690133143247!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0199835183902636!GO:0030308;negative regulation of cell growth;0.0204596640636512!GO:0043433;negative regulation of transcription factor activity;0.020934848577092!GO:0048518;positive regulation of biological process;0.020934848577092!GO:0015631;tubulin binding;0.0210680400735581!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.021304112015346!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.02148985411667!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.02148985411667!GO:0008632;apoptotic program;0.021631626730285!GO:0007034;vacuolar transport;0.0219137066564375!GO:0030384;phosphoinositide metabolic process;0.0222165136803651!GO:0044437;vacuolar part;0.022389917375284!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.022389917375284!GO:0012506;vesicle membrane;0.0228310431074336!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0229025983675413!GO:0005862;muscle thin filament tropomyosin;0.0231498775223747!GO:0016125;sterol metabolic process;0.0231881254852391!GO:0044438;microbody part;0.0231881254852391!GO:0044439;peroxisomal part;0.0231881254852391!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0232629036818392!GO:0035035;histone acetyltransferase binding;0.0233480658182553!GO:0006635;fatty acid beta-oxidation;0.0234662548211029!GO:0005765;lysosomal membrane;0.0238132053681848!GO:0000209;protein polyubiquitination;0.0239544142426033!GO:0008047;enzyme activator activity;0.0246731749805552!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0248794918625487!GO:0031406;carboxylic acid binding;0.0255014344212153!GO:0008097;5S rRNA binding;0.0256208718900936!GO:0006739;NADP metabolic process;0.0256540118265125!GO:0051059;NF-kappaB binding;0.0257737908180687!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0259157441970973!GO:0031543;peptidyl-proline dioxygenase activity;0.0263939780155521!GO:0003684;damaged DNA binding;0.0268634847214928!GO:0006066;alcohol metabolic process;0.0272514285713147!GO:0016584;nucleosome positioning;0.0273457458276614!GO:0019362;pyridine nucleotide metabolic process;0.0275157727865612!GO:0006376;mRNA splice site selection;0.0275157727865612!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0275157727865612!GO:0006401;RNA catabolic process;0.0275830415598787!GO:0016272;prefoldin complex;0.0277646201756631!GO:0015036;disulfide oxidoreductase activity;0.0280055274477529!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0280055274477529!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0282090192616776!GO:0030145;manganese ion binding;0.0285696019743485!GO:0005586;collagen type III;0.0285696019743485!GO:0016197;endosome transport;0.029007304792101!GO:0050811;GABA receptor binding;0.0290244400658812!GO:0008033;tRNA processing;0.0291129674076236!GO:0040029;regulation of gene expression, epigenetic;0.0293255399038277!GO:0048468;cell development;0.0295908122884876!GO:0000049;tRNA binding;0.0295908122884876!GO:0030031;cell projection biogenesis;0.0299689009810464!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0300732418606717!GO:0006354;RNA elongation;0.0303437089408555!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0304122697934516!GO:0005100;Rho GTPase activator activity;0.0305185077797029!GO:0050681;androgen receptor binding;0.0306704881323424!GO:0051098;regulation of binding;0.0307222939011016!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0310332313521737!GO:0006644;phospholipid metabolic process;0.0310581534414793!GO:0022408;negative regulation of cell-cell adhesion;0.031509831399247!GO:0031418;L-ascorbic acid binding;0.0317332381813212!GO:0006607;NLS-bearing substrate import into nucleus;0.0317332381813212!GO:0031272;regulation of pseudopodium formation;0.0317332381813212!GO:0031269;pseudopodium formation;0.0317332381813212!GO:0031344;regulation of cell projection organization and biogenesis;0.0317332381813212!GO:0031268;pseudopodium organization and biogenesis;0.0317332381813212!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0317332381813212!GO:0031274;positive regulation of pseudopodium formation;0.0317332381813212!GO:0009225;nucleotide-sugar metabolic process;0.0320076501396002!GO:0031903;microbody membrane;0.0324509913175845!GO:0005778;peroxisomal membrane;0.0324509913175845!GO:0032984;macromolecular complex disassembly;0.0324557212351709!GO:0008147;structural constituent of bone;0.0328232330103623!GO:0042168;heme metabolic process;0.033278184077839!GO:0019798;procollagen-proline dioxygenase activity;0.034117702667834!GO:0006417;regulation of translation;0.034117702667834!GO:0006779;porphyrin biosynthetic process;0.0349127858842519!GO:0033014;tetrapyrrole biosynthetic process;0.0349127858842519!GO:0008629;induction of apoptosis by intracellular signals;0.0350229955429502!GO:0004860;protein kinase inhibitor activity;0.0351276694945514!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0353242367446975!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0353462824275848!GO:0006338;chromatin remodeling;0.0357026736814084!GO:0044452;nucleolar part;0.0374448423698824!GO:0004300;enoyl-CoA hydratase activity;0.0375165357102093!GO:0004722;protein serine/threonine phosphatase activity;0.0377986759209882!GO:0005637;nuclear inner membrane;0.0378160928113589!GO:0005777;peroxisome;0.0378893918544142!GO:0042579;microbody;0.0378893918544142!GO:0030522;intracellular receptor-mediated signaling pathway;0.038679198420023!GO:0008234;cysteine-type peptidase activity;0.0390463518789069!GO:0008168;methyltransferase activity;0.0390805268711737!GO:0005975;carbohydrate metabolic process;0.0391029605242827!GO:0017134;fibroblast growth factor binding;0.0393577763863386!GO:0005811;lipid particle;0.0397430780999719!GO:0043624;cellular protein complex disassembly;0.0402012597766983!GO:0006629;lipid metabolic process;0.0404241101801297!GO:0005669;transcription factor TFIID complex;0.0404241101801297!GO:0006693;prostaglandin metabolic process;0.0409000733673561!GO:0006692;prostanoid metabolic process;0.0409000733673561!GO:0032940;secretion by cell;0.0410939696536964!GO:0003923;GPI-anchor transamidase activity;0.0411006064084365!GO:0016255;attachment of GPI anchor to protein;0.0411006064084365!GO:0042765;GPI-anchor transamidase complex;0.0411006064084365!GO:0046966;thyroid hormone receptor binding;0.0422247728940262!GO:0032535;regulation of cellular component size;0.0426191689351549!GO:0006767;water-soluble vitamin metabolic process;0.0431219654116282!GO:0030508;thiol-disulfide exchange intermediate activity;0.0431542710341283!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0432544878262856!GO:0010257;NADH dehydrogenase complex assembly;0.0432544878262856!GO:0033108;mitochondrial respiratory chain complex assembly;0.0432544878262856!GO:0031123;RNA 3'-end processing;0.043545231794463!GO:0000118;histone deacetylase complex;0.0436057600814404!GO:0000030;mannosyltransferase activity;0.0436057600814404!GO:0005720;nuclear heterochromatin;0.0437900860582963!GO:0000792;heterochromatin;0.0437936698547512!GO:0030032;lamellipodium biogenesis;0.0438446368705011!GO:0033559;unsaturated fatty acid metabolic process;0.0439789309244241!GO:0006636;unsaturated fatty acid biosynthetic process;0.0439789309244241!GO:0030100;regulation of endocytosis;0.0440107809521578!GO:0005017;platelet-derived growth factor receptor activity;0.0441903877448341!GO:0005784;translocon complex;0.0444541484034968!GO:0030911;TPR domain binding;0.0451509327486425!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0451509327486425!GO:0007179;transforming growth factor beta receptor signaling pathway;0.045968597711623!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0463659050360949!GO:0008022;protein C-terminus binding;0.0464146847667593!GO:0009116;nucleoside metabolic process;0.046881940074199!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0469638791737529!GO:0004784;superoxide dismutase activity;0.0469638791737529!GO:0045926;negative regulation of growth;0.0476985304944279!GO:0009112;nucleobase metabolic process;0.0479329695632117!GO:0031371;ubiquitin conjugating enzyme complex;0.0480029764216683!GO:0003678;DNA helicase activity;0.0480420502368306!GO:0030832;regulation of actin filament length;0.0480420502368306!GO:0008286;insulin receptor signaling pathway;0.0480609167040481!GO:0000279;M phase;0.0483851941628869!GO:0043065;positive regulation of apoptosis;0.0493558790634929!GO:0016741;transferase activity, transferring one-carbon groups;0.0494260773283709!GO:0050790;regulation of catalytic activity;0.0497013677203672 | |||
|sample_id=11248 | |sample_id=11248 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=spinal cord | |sample_tissue=spinal cord | ||
|top_motifs=RXR{A,B,G}:2.08726327293;ZNF238:1.89133974462;GZF1:1.61000225261;HES1:1.46669967332;ATF6:1.44060604715;TAL1_TCF{3,4,12}:1.34114991198;ZNF423:1.2680145207;PDX1:1.24916770314;GLI1..3:1.19136591572;NFIX:1.19120118775;EBF1:1.18971454619;TFAP4:1.16321895193;ESR1:1.08234124767;FOXL1:1.0787746566;HOX{A5,B5}:1.06421945743;GFI1B:1.03948750177;NR1H4:1.02432729488;NR6A1:0.919196621437;MYBL2:0.885548515931;NR3C1:0.85782309293;TLX1..3_NFIC{dimer}:0.8555578635;PATZ1:0.854383907348;MAFB:0.837744061635;NFATC1..3:0.815498661661;EN1,2:0.805288043692;YY1:0.768640459648;SOX5:0.763346994221;ALX4:0.741169747036;NANOG{mouse}:0.736955713089;NKX6-1,2:0.719497890968;AIRE:0.714993463918;GTF2A1,2:0.709070602389;KLF4:0.704882135292;DMAP1_NCOR{1,2}_SMARC:0.682466670731;ZBTB6:0.679521880067;ZNF384:0.673280692017;PAX1,9:0.662884975526;MZF1:0.652749334763;TBX4,5:0.621964268957;UFEwm:0.618712106803;ZIC1..3:0.612784591973;TEAD1:0.598018283107;DBP:0.583783277681;PAX5:0.58335218244;GTF2I:0.568811487349;ARID5B:0.562084201562;STAT1,3:0.554546639126;NKX2-2,8:0.552129674273;NKX2-3_NKX2-5:0.541071606147;NHLH1,2:0.53238352031;FOXO1,3,4:0.519985475428;SRF:0.490008435926;SPZ1:0.473040990966;HAND1,2:0.45952079625;LHX3,4:0.438538537103;MYFfamily:0.424036615691;SMAD1..7,9:0.421762570239;TFCP2:0.41471563813;NFE2L2:0.40933998922;FOXD3:0.37655299583;RREB1:0.362246953113;AHR_ARNT_ARNT2:0.361706772584;IKZF1:0.346173361927;FOXQ1:0.339333924606;STAT2,4,6:0.33228887417;MAZ:0.318372587267;BACH2:0.295570486925;SOX17:0.29109940042;NKX3-1:0.273220332664;ESRRA:0.271342951486;HSF1,2:0.266574905709;RBPJ:0.252569034995;PRRX1,2:0.248769467428;ONECUT1,2:0.247820950327;NFE2:0.242746294721;HOX{A6,A7,B6,B7}:0.234397423454;RFX1:0.222746762475;HMGA1,2:0.221800536709;SREBF1,2:0.205977976345;GATA4:0.195597565733;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.190539239997;IKZF2:0.190478515267;MEF2{A,B,C,D}:0.188332075834;HNF1A:0.166560781549;PRDM1:0.164413481033;XBP1:0.145195330732;NR5A1,2:0.140238349496;RFX2..5_RFXANK_RFXAP:0.1383102269;PAX4:0.136546425883;EVI1:0.128830814265;TBP:0.12854120779;HNF4A_NR2F1,2:0.122966132305;FOSL2:0.118845562949;LEF1_TCF7_TCF7L1,2:0.112117979378;HMX1:0.105280925608;FOX{I1,J2}:0.099739294912;MED-1{core}:0.0938258816669;POU6F1:0.0754500028036;FOXP3:0.0681682824637;RUNX1..3:0.0641962989779;TEF:0.0497510111018;GFI1:0.0484876573903;CDC5L:0.0473501899053;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0394059821572;HLF:0.0358172887736;BPTF:0.0278568385169;FOXN1:0.023654322561;PAX8:0.0120490484557;SP1:0.00937899582093;TGIF1:-0.0116255847945;MTF1:-0.0171435950791;HBP1_HMGB_SSRP1_UBTF:-0.020378149135;ATF2:-0.0374241251497;FOS_FOS{B,L1}_JUN{B,D}:-0.038718399913;TFAP2{A,C}:-0.0495058459726;STAT5{A,B}:-0.0502277327705;MTE{core}:-0.0518771701853;AR:-0.0526723526796;HOX{A4,D4}:-0.0769222733402;TP53:-0.0822132920296;HIC1:-0.106964708943;ZNF143:-0.122656037134;FOXA2:-0.123582402402;NKX3-2:-0.163621146854;ZNF148:-0.173852147021;FOX{D1,D2}:-0.175026741451;FOX{F1,F2,J1}:-0.181159876359;T:-0.195998613135;RXRA_VDR{dimer}:-0.220501759967;SOX2:-0.234112985544;EGR1..3:-0.236053996244;CRX:-0.239536688656;ADNP_IRX_SIX_ZHX:-0.24546463976;NKX2-1,4:-0.253617763052;REST:-0.258641951166;CEBPA,B_DDIT3:-0.260961313487;ELK1,4_GABP{A,B1}:-0.268279423463;ATF5_CREB3:-0.272046150152;POU3F1..4:-0.276892120382;NFE2L1:-0.279567329496;NFIL3:-0.281175376749;ATF4:-0.294490870057;JUN:-0.300577210376;CREB1:-0.320234577081;TOPORS:-0.330281823859;HIF1A:-0.353198099621;ZFP161:-0.370287992508;POU5F1:-0.379282746352;MYB:-0.384440644695;CUX2:-0.386059117861;NFKB1_REL_RELA:-0.395924069898;XCPE1{core}:-0.398077373935;RORA:-0.39914513735;CDX1,2,4:-0.423704108901;NRF1:-0.424486591803;LMO2:-0.431028930236;IRF1,2:-0.437588642862;bHLH_family:-0.443182057654;SNAI1..3:-0.450779046069;TFAP2B:-0.458970613917;POU2F1..3:-0.463185698997;PAX2:-0.488943866459;ETS1,2:-0.489282718975;PAX6:-0.501580981682;GCM1,2:-0.521104712445;IRF7:-0.526521375303;PAX3,7:-0.536284065286;FOXM1:-0.567448681237;NFY{A,B,C}:-0.569238685195;GATA6:-0.595492965201;PPARG:-0.605696185259;SPI1:-0.60908722918;SPIB:-0.609315546322;PBX1:-0.638809617409;EP300:-0.643595038488;ELF1,2,4:-0.660936916118;BREu{core}:-0.665318682213;ZEB1:-0.717313052032;NANOG:-0.721068860785;E2F1..5:-0.725451828292;SOX{8,9,10}:-0.732951003388;ZBTB16:-0.751277794935;POU1F1:-0.790026601058;VSX1,2:-0.81291369728;HOXA9_MEIS1:-0.876446875692;FOXP1:-0.888745341927;TFDP1:-0.988181981791;MYOD1:-1.03953556875;TLX2:-1.06085128149;ALX1:-1.10527909219;OCT4_SOX2{dimer}:-1.14957308231;PITX1..3:-1.473825371 | |top_motifs=RXR{A,B,G}:2.08726327293;ZNF238:1.89133974462;GZF1:1.61000225261;HES1:1.46669967332;ATF6:1.44060604715;TAL1_TCF{3,4,12}:1.34114991198;ZNF423:1.2680145207;PDX1:1.24916770314;GLI1..3:1.19136591572;NFIX:1.19120118775;EBF1:1.18971454619;TFAP4:1.16321895193;ESR1:1.08234124767;FOXL1:1.0787746566;HOX{A5,B5}:1.06421945743;GFI1B:1.03948750177;NR1H4:1.02432729488;NR6A1:0.919196621437;MYBL2:0.885548515931;NR3C1:0.85782309293;TLX1..3_NFIC{dimer}:0.8555578635;PATZ1:0.854383907348;MAFB:0.837744061635;NFATC1..3:0.815498661661;EN1,2:0.805288043692;YY1:0.768640459648;SOX5:0.763346994221;ALX4:0.741169747036;NANOG{mouse}:0.736955713089;NKX6-1,2:0.719497890968;AIRE:0.714993463918;GTF2A1,2:0.709070602389;KLF4:0.704882135292;DMAP1_NCOR{1,2}_SMARC:0.682466670731;ZBTB6:0.679521880067;ZNF384:0.673280692017;PAX1,9:0.662884975526;MZF1:0.652749334763;TBX4,5:0.621964268957;UFEwm:0.618712106803;ZIC1..3:0.612784591973;TEAD1:0.598018283107;DBP:0.583783277681;PAX5:0.58335218244;GTF2I:0.568811487349;ARID5B:0.562084201562;STAT1,3:0.554546639126;NKX2-2,8:0.552129674273;NKX2-3_NKX2-5:0.541071606147;NHLH1,2:0.53238352031;FOXO1,3,4:0.519985475428;SRF:0.490008435926;SPZ1:0.473040990966;HAND1,2:0.45952079625;LHX3,4:0.438538537103;MYFfamily:0.424036615691;SMAD1..7,9:0.421762570239;TFCP2:0.41471563813;NFE2L2:0.40933998922;FOXD3:0.37655299583;RREB1:0.362246953113;AHR_ARNT_ARNT2:0.361706772584;IKZF1:0.346173361927;FOXQ1:0.339333924606;STAT2,4,6:0.33228887417;MAZ:0.318372587267;BACH2:0.295570486925;SOX17:0.29109940042;NKX3-1:0.273220332664;ESRRA:0.271342951486;HSF1,2:0.266574905709;RBPJ:0.252569034995;PRRX1,2:0.248769467428;ONECUT1,2:0.247820950327;NFE2:0.242746294721;HOX{A6,A7,B6,B7}:0.234397423454;RFX1:0.222746762475;HMGA1,2:0.221800536709;SREBF1,2:0.205977976345;GATA4:0.195597565733;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.190539239997;IKZF2:0.190478515267;MEF2{A,B,C,D}:0.188332075834;HNF1A:0.166560781549;PRDM1:0.164413481033;XBP1:0.145195330732;NR5A1,2:0.140238349496;RFX2..5_RFXANK_RFXAP:0.1383102269;PAX4:0.136546425883;EVI1:0.128830814265;TBP:0.12854120779;HNF4A_NR2F1,2:0.122966132305;FOSL2:0.118845562949;LEF1_TCF7_TCF7L1,2:0.112117979378;HMX1:0.105280925608;FOX{I1,J2}:0.099739294912;MED-1{core}:0.0938258816669;POU6F1:0.0754500028036;FOXP3:0.0681682824637;RUNX1..3:0.0641962989779;TEF:0.0497510111018;GFI1:0.0484876573903;CDC5L:0.0473501899053;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0394059821572;HLF:0.0358172887736;BPTF:0.0278568385169;FOXN1:0.023654322561;PAX8:0.0120490484557;SP1:0.00937899582093;TGIF1:-0.0116255847945;MTF1:-0.0171435950791;HBP1_HMGB_SSRP1_UBTF:-0.020378149135;ATF2:-0.0374241251497;FOS_FOS{B,L1}_JUN{B,D}:-0.038718399913;TFAP2{A,C}:-0.0495058459726;STAT5{A,B}:-0.0502277327705;MTE{core}:-0.0518771701853;AR:-0.0526723526796;HOX{A4,D4}:-0.0769222733402;TP53:-0.0822132920296;HIC1:-0.106964708943;ZNF143:-0.122656037134;FOXA2:-0.123582402402;NKX3-2:-0.163621146854;ZNF148:-0.173852147021;FOX{D1,D2}:-0.175026741451;FOX{F1,F2,J1}:-0.181159876359;T:-0.195998613135;RXRA_VDR{dimer}:-0.220501759967;SOX2:-0.234112985544;EGR1..3:-0.236053996244;CRX:-0.239536688656;ADNP_IRX_SIX_ZHX:-0.24546463976;NKX2-1,4:-0.253617763052;REST:-0.258641951166;CEBPA,B_DDIT3:-0.260961313487;ELK1,4_GABP{A,B1}:-0.268279423463;ATF5_CREB3:-0.272046150152;POU3F1..4:-0.276892120382;NFE2L1:-0.279567329496;NFIL3:-0.281175376749;ATF4:-0.294490870057;JUN:-0.300577210376;CREB1:-0.320234577081;TOPORS:-0.330281823859;HIF1A:-0.353198099621;ZFP161:-0.370287992508;POU5F1:-0.379282746352;MYB:-0.384440644695;CUX2:-0.386059117861;NFKB1_REL_RELA:-0.395924069898;XCPE1{core}:-0.398077373935;RORA:-0.39914513735;CDX1,2,4:-0.423704108901;NRF1:-0.424486591803;LMO2:-0.431028930236;IRF1,2:-0.437588642862;bHLH_family:-0.443182057654;SNAI1..3:-0.450779046069;TFAP2B:-0.458970613917;POU2F1..3:-0.463185698997;PAX2:-0.488943866459;ETS1,2:-0.489282718975;PAX6:-0.501580981682;GCM1,2:-0.521104712445;IRF7:-0.526521375303;PAX3,7:-0.536284065286;FOXM1:-0.567448681237;NFY{A,B,C}:-0.569238685195;GATA6:-0.595492965201;PPARG:-0.605696185259;SPI1:-0.60908722918;SPIB:-0.609315546322;PBX1:-0.638809617409;EP300:-0.643595038488;ELF1,2,4:-0.660936916118;BREu{core}:-0.665318682213;ZEB1:-0.717313052032;NANOG:-0.721068860785;E2F1..5:-0.725451828292;SOX{8,9,10}:-0.732951003388;ZBTB16:-0.751277794935;POU1F1:-0.790026601058;VSX1,2:-0.81291369728;HOXA9_MEIS1:-0.876446875692;FOXP1:-0.888745341927;TFDP1:-0.988181981791;MYOD1:-1.03953556875;TLX2:-1.06085128149;ALX1:-1.10527909219;OCT4_SOX2{dimer}:-1.14957308231;PITX1..3:-1.473825371 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11248-116E6;search_select_hide=table117:FF:11248-116E6 | |||
}} | }} | ||
Latest revision as of 16:27, 3 June 2020
| Name: | Anulus Pulposus Cell, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10876 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10876
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10876
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.676 |
| 10 | 10 | 0.724 |
| 100 | 100 | 0.691 |
| 101 | 101 | 0.761 |
| 102 | 102 | 0.166 |
| 103 | 103 | 0.0613 |
| 104 | 104 | 0.421 |
| 105 | 105 | 0.429 |
| 106 | 106 | 0.252 |
| 107 | 107 | 0.0157 |
| 108 | 108 | 0.784 |
| 109 | 109 | 0.801 |
| 11 | 11 | 0.228 |
| 110 | 110 | 0.405 |
| 111 | 111 | 0.425 |
| 112 | 112 | 0.685 |
| 113 | 113 | 0.451 |
| 114 | 114 | 0.471 |
| 115 | 115 | 0.547 |
| 116 | 116 | 0.124 |
| 117 | 117 | 0.704 |
| 118 | 118 | 0.798 |
| 119 | 119 | 0.94 |
| 12 | 12 | 0.253 |
| 120 | 120 | 0.434 |
| 121 | 121 | 0.34 |
| 122 | 122 | 0.246 |
| 123 | 123 | 5.99451e-5 |
| 124 | 124 | 0.611 |
| 125 | 125 | 0.14 |
| 126 | 126 | 0.512 |
| 127 | 127 | 0.225 |
| 128 | 128 | 0.0185 |
| 129 | 129 | 0.874 |
| 13 | 13 | 0.617 |
| 130 | 130 | 0.114 |
| 131 | 131 | 0.534 |
| 132 | 132 | 0.0942 |
| 133 | 133 | 0.838 |
| 134 | 134 | 0.315 |
| 135 | 135 | 0.966 |
| 136 | 136 | 0.678 |
| 137 | 137 | 0.208 |
| 138 | 138 | 0.518 |
| 139 | 139 | 0.801 |
| 14 | 14 | 0.619 |
| 140 | 140 | 0.17 |
| 141 | 141 | 0.104 |
| 142 | 142 | 0.579 |
| 143 | 143 | 0.937 |
| 144 | 144 | 0.26 |
| 145 | 145 | 0.279 |
| 146 | 146 | 0.184 |
| 147 | 147 | 0.317 |
| 148 | 148 | 0.661 |
| 149 | 149 | 0.0609 |
| 15 | 15 | 0.701 |
| 150 | 150 | 0.445 |
| 151 | 151 | 0.612 |
| 152 | 152 | 0.28 |
| 153 | 153 | 0.748 |
| 154 | 154 | 0.266 |
| 155 | 155 | 0.111 |
| 156 | 156 | 0.1 |
| 157 | 157 | 0.728 |
| 158 | 158 | 0.0103 |
| 159 | 159 | 0.228 |
| 16 | 16 | 0.0621 |
| 160 | 160 | 0.122 |
| 161 | 161 | 0.877 |
| 162 | 162 | 0.111 |
| 163 | 163 | 0.932 |
| 164 | 164 | 0.431 |
| 165 | 165 | 0.847 |
| 166 | 166 | 0.266 |
| 167 | 167 | 0.159 |
| 168 | 168 | 0.558 |
| 169 | 169 | 0.0701 |
| 17 | 17 | 0.275 |
| 18 | 18 | 0.229 |
| 19 | 19 | 0.0226 |
| 2 | 2 | 0.167 |
| 20 | 20 | 0.654 |
| 21 | 21 | 0.352 |
| 22 | 22 | 0.0497 |
| 23 | 23 | 0.182 |
| 24 | 24 | 0.193 |
| 25 | 25 | 0.661 |
| 26 | 26 | 0.837 |
| 27 | 27 | 0.106 |
| 28 | 28 | 0.233 |
| 29 | 29 | 0.129 |
| 3 | 3 | 0.316 |
| 30 | 30 | 0.0777 |
| 31 | 31 | 0.333 |
| 32 | 32 | 3.35883e-8 |
| 33 | 33 | 0.219 |
| 34 | 34 | 0.497 |
| 35 | 35 | 0.678 |
| 36 | 36 | 0.224 |
| 37 | 37 | 0.0361 |
| 38 | 38 | 0.745 |
| 39 | 39 | 0.192 |
| 4 | 4 | 0.0055 |
| 40 | 40 | 0.383 |
| 41 | 41 | 0.0417 |
| 42 | 42 | 0.811 |
| 43 | 43 | 0.374 |
| 44 | 44 | 0.675 |
| 45 | 45 | 0.203 |
| 46 | 46 | 0.171 |
| 47 | 47 | 0.767 |
| 48 | 48 | 0.865 |
| 49 | 49 | 0.84 |
| 5 | 5 | 0.465 |
| 50 | 50 | 0.383 |
| 51 | 51 | 0.281 |
| 52 | 52 | 0.487 |
| 53 | 53 | 0.126 |
| 54 | 54 | 0.373 |
| 55 | 55 | 0.273 |
| 56 | 56 | 0.513 |
| 57 | 57 | 0.788 |
| 58 | 58 | 0.572 |
| 59 | 59 | 0.022 |
| 6 | 6 | 0.704 |
| 60 | 60 | 0.732 |
| 61 | 61 | 0.733 |
| 62 | 62 | 0.652 |
| 63 | 63 | 0.42 |
| 64 | 64 | 0.966 |
| 65 | 65 | 0.245 |
| 66 | 66 | 0.56 |
| 67 | 67 | 0.638 |
| 68 | 68 | 0.458 |
| 69 | 69 | 0.295 |
| 7 | 7 | 0.741 |
| 70 | 70 | 0.71 |
| 71 | 71 | 0.418 |
| 72 | 72 | 0.129 |
| 73 | 73 | 0.124 |
| 74 | 74 | 0.64 |
| 75 | 75 | 0.556 |
| 76 | 76 | 0.741 |
| 77 | 77 | 0.104 |
| 78 | 78 | 0.764 |
| 79 | 79 | 0.108 |
| 8 | 8 | 0.143 |
| 80 | 80 | 0.714 |
| 81 | 81 | 0.644 |
| 82 | 82 | 0.286 |
| 83 | 83 | 0.591 |
| 84 | 84 | 0.56 |
| 85 | 85 | 0.366 |
| 86 | 86 | 0.476 |
| 87 | 87 | 0.825 |
| 88 | 88 | 0.186 |
| 89 | 89 | 0.0588 |
| 9 | 9 | 0.0945 |
| 90 | 90 | 0.697 |
| 91 | 91 | 0.597 |
| 92 | 92 | 0.454 |
| 93 | 93 | 0.601 |
| 94 | 94 | 0.356 |
| 95 | 95 | 0.679 |
| 96 | 96 | 0.222 |
| 97 | 97 | 0.439 |
| 98 | 98 | 0.45 |
| 99 | 99 | 8.55568e-5 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10876
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002602 (annulus pulposus cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0002418 (cartilage tissue)
0000479 (tissue)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004905 (articulation)
0011135 (intervertebral cartilage)
0000075 (subdivision of skeletal system)
0002216 (symphysis)
0004765 (skeletal element)
0011134 (nonsynovial joint)
0002209 (fibrous joint)
0002213 (cartilaginous joint)
0000982 (skeletal joint)
0004755 (skeletal tissue)
0006444 (annulus fibrosus)
0001995 (fibrocartilage)
0007844 (cartilage element)
0004715 (annulus fibrosus disci intervertebralis)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
0011138 (post-cranial axial skeletal system)
0001130 (vertebral column)
0001066 (intervertebral disk)
0001468 (intervertebral joint)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000192 (human anulus pulposus cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
