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(Created page with "{{f5samples |id=FF:11252-116F1 |name=Nucleus Pulposus Cell, donor1 |sample_id=11252 |rna_tube_id=116F1 |rna_box=116 |rna_position=F1 |sample_cell_lot= |sample_cell_cat...")
 
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{{f5samples
{{f5samples
|id=FF:11252-116F1
|DRA_sample_Accession=CAGE@SAMD00005285
|name=Nucleus Pulposus Cell, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005285
|sample_id=11252
|accession_numbers=CAGE;DRX008381;DRR009253;DRZ000678;DRZ002063;DRZ012028;DRZ013413
|rna_tube_id=116F1
|accession_numbers_RNASeq=sRNA-Seq;DRX037216;DRR041582;DRZ007224
|rna_box=116
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004905,UBERON:0011135,UBERON:0000075,UBERON:0002216,UBERON:0004765,UBERON:0011134,UBERON:0002209,UBERON:0002213,UBERON:0000982,UBERON:0010317,UBERON:0007844,UBERON:0002242,UBERON:0002204,UBERON:0001434,UBERON:0004770,UBERON:0011138,UBERON:0001130,UBERON:0001066,UBERON:0001468
|rna_position=F1
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002564
|sample_cell_lot=
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=lot:4769
|rna_catalog_number=SC4805
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=spinal cord
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=nucleus pulposus cell of intervertebral disc
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=0.90000
|sample_note=
|profile_hcage=CNhs10881,LSID703,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10013,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000144,CL:0000255,CL:0000548,CL:0002320,CL:0002371,CL:0002564
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000468,UBERON:0000479,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002242,UBERON:0002328,UBERON:0002384,UBERON:0002532,UBERON:0003068,UBERON:0004120,UBERON:0004880,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000123
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr14:61116183..61116208,-!p1@SIX1!2.06!408.19!SIX1;;chr14:37131058..37131139,+!p1@PAX9!1.76!57.17!PAX9;;chr14:37126765..37126799,+!p2@PAX9!1.72!51.41!PAX9;;chr6:85474299..85474324,-!p1@TBX18!1.71!88.71!TBX18;;chr20:21686317..21686350,+!p1@PAX1!1.69!47.85!PAX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.67!45.64!HOXC5;;chr7:19157248..19157268,-!p1@TWIST1!1.66!120.11!TWIST1;;chr3:25470156..25470227,+!p2@RARB!1.57!35.83!RARB;;chr20:21686290..21686311,+!p2@PAX1!1.55!34.35!PAX1;;chr12:54393880..54393962,+!p1@HOXC9!1.54!33.86!HOXC9;;chr12:54378923..54378966,+!p1@HOXC10!1.53!33.00!HOXC10;;chr16:86544113..86544145,+!p1@FOXF1!1.52!39.75!FOXF1;;chr7:15726296..15726315,-!p1@MEOX2!1.52!32.02!MEOX2;;chr7:27192185..27192209,-!p1@HOXA3!1.50!30.80!HOXA3;;chr9:132427883..132427951,+!p2@PRRX2!1.49!29.94!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.44!34.72!PRRX2;;chr6:1389789..1389821,+!p1@FOXF2!1.42!34.84!FOXF2;;chr17:46682321..46682362,-!p1@HOXB6!1.41!24.78!HOXB6;;chr5:158526917..158526932,-!p1@EBF1!1.37!54.60!EBF1;;chr6:1610293..1610310,+!p1@FOXC1!1.37!37.30!FOXC1;;chr1:170633348..170633399,+!p2@PRRX1!1.37!30.67!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.36!24.54!PRRX1;;chr7:27196217..27196246,-!p2@HOXA7!1.34!20.73!HOXA7;;chr15:57511609..57511651,+!p2@TCF12!1.33!33.62!TCF12;;chr3:147127142..147127168,+!p1@ZIC1!1.31!19.63!ZIC1;;chr16:86600426..86600441,+!p1@FOXC2!1.29!45.15!FOXC2;;chr7:27205136..27205164,-!p1@HOXA9!1.26!17.30!HOXA9;;chr12:54402745..54402788,+!p1@HOXC8!1.26!17.18!HOXC8;;chr14:61116168..61116180,-!p2@SIX1!1.25!19.39!SIX1;;chr19:45971246..45971265,+!p1@FOSB!1.23!288.57!FOSB;;chr7:15726243..15726293,-!p2@MEOX2!1.22!15.46!MEOX2;;chr19:13134772..13134822,+!p2@NFIX!1.21!22.21!NFIX;;chr11:113930425..113930471,+!p1@ZBTB16!1.21!21.84!ZBTB16;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.21!16.07!GLIS1;;chr12:54379029..54379057,+!p2@HOXC10!1.20!14.97!HOXC10;;chr3:25469815..25469866,+!p3@RARB!1.19!14.48!RARB;;chr3:25469724..25469773,+!p1@RARB!1.18!20.61!RARB;;chr9:96717629..96717644,-!p1@BARX1!1.15!13.25!BARX1;;chr7:19157043..19157088,-!p2@TWIST1!1.13!31.53!TWIST1;;chr14:75745523..75745537,+!p1@FOS!1.12!1436.10!FOS;;chr8:48650715..48650735,-!p1@CEBPD!1.11!1509.35!CEBPD;;chr5:137801160..137801176,+!p1@EGR1!1.11!1186.55!EGR1;;chr5:137804484..137804498,+!p2@EGR1!1.11!47.73!EGR1;;chr1:158969752..158969780,+!p6@IFI16!1.11!20.86!IFI16;;chr8:116673894..116673913,-!p12@TRPS1!1.11!12.02!TRPS1;;chr12:54422217..54422239,+!p3@HOXC6!1.10!11.53!HOXC6;;chr14:61191018..61191048,-!p1@SIX4!1.09!24.91!SIX4;;chr14:37126814..37126834,+!p4@PAX9!1.09!11.41!PAX9;;chr1:59249688..59249703,-!p3@JUN!1.07!65.15!JUN;;chr8:77593474..77593612,+!p1@ZFHX4!1.07!46.13!ZFHX4;;chr1:170632959..170632987,+!p4@PRRX1!1.06!11.53!PRRX1;;chr7:27213893..27213954,-!p1@HOXA10!1.06!10.55!HOXA10;;chr8:99956662..99956684,+!p1@OSR2!1.05!15.83!OSR2;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.18!KDM5D;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.05!10.18!HOXC5;;chr2:214015111..214015179,-!p1@IKZF2!1.03!17.67!IKZF2;;chr2:85981107..85981120,+!p3@ATOH8!1.03!9.82!ATOH8;;chr3:147127177..147127194,+!p2@ZIC1!1.03!9.69!ZIC1;;chr7:27205106..27205134,-!p2@HOXA9!1.01!9.32!HOXA9;;chr8:49833948..49833973,-!p2@SNAI2!0.99!57.67!SNAI2;;chr21:47063625..47063658,+!p1@PCBP3!0.98!38.16!PCBP3;;chr22:19748231..19748317,+!p1@TBX1!0.98!8.59!TBX1;;chr17:46675558..46675577,-!p2@HOXB6!0.98!8.59!HOXB6;;chr1:59249707..59249727,-!p1@JUN!0.97!357.28!JUN;;chr12:54402790..54402805,+!p2@HOXC8!0.96!8.22!HOXC8;;chr7:15725757..15725828,-!p5@MEOX2!0.96!8.10!MEOX2;;chr12:115121962..115121987,-!p1@TBX3!0.95!68.09!TBX3;;chr17:46688334..46688385,-!p1@HOXB7!0.95!11.66!HOXB7;;chr19:45260775..45260838,+!p5@BCL3!0.95!10.31!BCL3;;chr4:13546632..13546662,-!p1@NKX3-2!0.95!7.85!NKX3-2;;chr11:46299539..46299620,+!p2@CREB3L1!0.94!13.25!CREB3L1;;chr9:73029219..73029289,-!p2@KLF9!0.93!23.68!KLF9;;chr10:28034739..28034756,-!p1@MKX!0.93!7.61!MKX;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.61!PRRX1;;chr2:214014959..214015006,-!p4@IKZF2!0.93!7.48!IKZF2;;chr5:92918919..92918942,+!p1@NR2F1!0.92!34.23!NR2F1;;chr2:45236540..45236577,-!p1@SIX2!0.92!7.36!SIX2;;chr3:147111231..147111281,+!p3@ZIC1!0.91!7.12!ZIC1;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.79!CREB3L1;;chr12:54402729..54402743,+!p3@HOXC8!0.90!6.87!HOXC8;;chr12:54422245..54422263,+!p7@HOXC6!0.89!6.75!HOXC6;;chr14:24837368..24837401,+!p1@NFATC4!0.87!15.70!NFATC4;;chr7:113726357..113726443,+!p1@FOXP2!0.86!11.04!FOXP2;;chr1:170633262..170633285,+!p3@PRRX1!0.86!7.24!PRRX1;;chr6:85474198..85474212,-!p3@TBX18!0.86!6.26!TBX18;;chr7:44143925..44143970,+!p1@AEBP1!0.85!145.27!AEBP1;;chr8:49833978..49833996,-!p1@SNAI2!0.85!134.47!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!0.85!20.37!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.05!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.85!6.13!ZFY;;chr3:71179699..71179744,-!p2@FOXP1!0.84!47.73!FOXP1;;chr3:12329397..12329433,+!p2@PPARG!0.84!13.99!PPARG;;chr1:158969727..158969749,+!p11@IFI16!0.84!5.89!IFI16;;chr11:113930401..113930422,+!p3@ZBTB16!0.84!5.89!ZBTB16;;chr3:12330560..12330579,+!p1@PPARG!0.83!6.75!PPARG;;chr6:134210243..134210257,+!p1@TCF21!0.83!5.77!TCF21;;chr16:79634624..79634642,-!p1@MAF!0.81!23.19!MAF;;chr2:85981222..85981259,+!p2@ATOH8!0.81!9.45!ATOH8;;chr6:45296048..45296082,+!p1@RUNX2!0.81!6.38!RUNX2;;chr15:57511589..57511608,+!p4@TCF12!0.81!5.52!TCF12;;chr11:125034640..125034655,+!p1@PKNOX2!0.81!5.40!PKNOX2;;chr2:178128149..178128198,-!p2@NFE2L2!0.80!30.43!NFE2L2;;chr7:27183291..27183324,-!p1@HOXA5!0.80!5.28!HOXA5;;chr13:45010939..45011033,-!p1@TSC22D1!0.79!374.21!TSC22D1;;chr5:72744594..72744609,-!p1@FOXD1!0.79!25.52!FOXD1;;chr9:16870659..16870675,-!p2@BNC2!0.79!6.50!BNC2;;chr9:77112244..77112262,+!p1@RORB!0.79!5.89!RORB;;chr8:77593448..77593471,+!p2@ZFHX4!0.79!5.15!ZFHX4;;chr3:25470062..25470084,+!p4@RARB!0.79!5.15!RARB;;chr5:92918894..92918912,+!p2@NR2F1!0.78!17.67!NR2F1;;chr9:73028814..73028895,-!p1@KLF9!0.77!52.51!KLF9;;chr12:115122318..115122331,-!p2@TBX3!0.77!4.91!TBX3;;chr14:61190754..61190776,-!p6@SIX4!0.77!4.91!SIX4;;chr6:19837592..19837621,+!p1@ID4!0.76!32.15!ID4;;chr7:27196267..27196311,-!p1@HOXA7!0.76!4.78!HOXA7;;chr16:86600870..86600921,+!p2@FOXC2!0.76!4.78!FOXC2;;chr3:187463220..187463232,-!p3@BCL6!0.75!14.97!BCL6;;chr19:49864746..49864780,-!p2@TEAD2!0.75!6.63!TEAD2;;chr14:75746722..75746777,+!p2@FOS!0.75!6.13!FOS;;chr20:48599506..48599526,+!p1@SNAI1!0.74!31.65!SNAI1;;chr16:73093174..73093209,-!p3@ZFHX3!0.74!6.38!ZFHX3;;chr1:59249732..59249749,-!p2@JUN!0.73!58.77!JUN;;chr13:73633131..73633149,+!p1@KLF5!0.73!52.39!KLF5;;chr5:124082322..124082364,-!p1@ZNF608!0.73!12.27!ZNF608;;chr14:61191049..61191080,-!p2@SIX4!0.73!7.97!SIX4;;chr1:47903709..47903764,+!p1@BC169308!0.73!5.03!FOXD2;;chr9:16870710..16870763,-!p1@BNC2!0.72!7.85!BNC2;;chr5:158526459..158526481,-!p2@EBF1!0.72!5.89!EBF1;;chr12:115122005..115122016,-!p3@TBX3!0.72!5.15!TBX3;;chr11:47279248..47279264,+!p3@NR1H3!0.72!4.91!NR1H3;;chr2:5832508..5832524,+!p1@SOX11!0.72!4.29!SOX11;;chr2:96012397..96012417,+!p3@KCNIP3!0.72!4.29!KCNIP3;;chr21:38071430..38071456,+!p1@SIM2!0.72!4.29!SIM2;;chr3:187463248..187463264,-!p1@BCL6!0.71!101.10!BCL6;;chr3:187463179..187463201,-!p2@BCL6!0.71!18.89!BCL6;;chr16:79633894..79633954,-!p3@MAF!0.71!8.47!MAF;;chr11:113930291..113930339,+!p2@ZBTB16!0.71!7.12!ZBTB16;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.17!CREB3L1;;chr12:54422268..54422278,+!p8@HOXC6!0.71!4.17!HOXC6;;chr7:27196196..27196210,-!p5@HOXA7!0.71!4.17!HOXA7;;chr3:71179746..71179783,-!p7@FOXP1!0.70!15.09!FOXP1;;chr2:19558373..19558392,-!p1@OSR1!0.70!12.15!OSR1;;chr14:21994337..21994442,-!p1@SALL2!0.69!11.78!SALL2;;chr13:37494365..37494381,-!p1@SMAD9!0.69!7.24!SMAD9;;chr8:57123815..57123867,-!p1@PLAG1!0.68!17.30!PLAG1;;chr2:113993052..113993097,-!p2@PAX8!0.68!9.45!PAX8;;chr2:239756739..239756755,+!p2@TWIST2!0.68!6.99!TWIST2;;chr5:92918956..92918969,+!p4@NR2F1!0.68!4.17!NR2F1;;chr6:1389989..1390019,+!p2@FOXF2!0.68!3.80!FOXF2;;chr2:176994408..176994492,+!p1@HOXD8!0.68!3.80!HOXD8;;chr12:54410948..54410992,+!p3@HOXC5!0.68!3.80!HOXC5;;chr19:13106214..13106382,+!p1@NFIX!0.67!99.13!NFIX;;chr12:57504975..57505019,-!p2@STAT6!0.67!16.93!STAT6;;chr10:8096631..8096660,+!p1@GATA3!0.67!4.54!GATA3;;chr3:169381420..169381535,-!p1@MECOM!0.67!4.42!MECOM;;chr5:137804130..137804156,+!p5@EGR1!0.67!3.93!EGR1;;chr17:46690839..46690884,-!p1@HOXB8!0.67!3.68!HOXB8;;chr11:125034605..125034636,+!p2@PKNOX2!0.67!3.68!PKNOX2;;chr12:66218598..66218645,+!p2@HMGA2!0.66!18.77!HMGA2;;chr18:22932080..22932170,-!p1@ZNF521!0.66!17.18!ZNF521;;chr15:42749722..42749739,-!p2@ZFP106!0.66!6.99!ZFP106;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.66!6.50!MEIS3P1;;chr10:131762504..131762555,-!p1@EBF3!0.66!3.56!EBF3;;chr10:63809013..63809041,+!p3@ARID5B!0.65!22.33!ARID5B;;chr12:54694758..54694805,-!p1@NFE2!0.65!4.29!NFE2;;chr18:53068911..53068935,-!p4@TCF4!0.65!4.05!TCF4;;chr5:158527104..158527135,-!p4@EBF1!0.65!3.44!EBF1;;chr7:15726220..15726236,-!p4@MEOX2!0.65!3.44!MEOX2;;chr19:46801639..46801699,+!p1@HIF3A!0.65!3.44!HIF3A;;chr17:59477233..59477263,+!p1@TBX2!0.64!11.90!TBX2;;chr3:12329358..12329393,+!p3@PPARG!0.64!9.20!PPARG;;chr20:30193083..30193098,+!p1@ID1!0.63!313.84!ID1;;chr17:70117153..70117174,+!p1@SOX9!0.63!39.38!SOX9;;chr8:116681409..116681431,-!p2@TRPS1!0.63!10.06!TRPS1;;chr7:27183263..27183284,-!p2@HOXA5!0.63!3.31!HOXA5;;chr15:67391010..67391046,+!p13@SMAD3!0.63!3.31!SMAD3;;chr11:125034586..125034604,+!p3@PKNOX2!0.63!3.31!PKNOX2;;chr1:61547894..61547968,+!p2@NFIA!0.62!10.67!NFIA;;chr3:147111198..147111225,+!p4@ZIC1!0.62!3.19!ZIC1;;chr10:63661437..63661465,+!p2@ARID5B!0.61!71.28!ARID5B;;chr10:63809106..63809127,+!p1@ARID5B!0.61!50.30!ARID5B;;chr10:63853436..63853442,+!p4@ARID5B!0.61!19.63!ARID5B;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.61!17.18!GLIS2;;chr19:13134457..13134462,+!p5@NFIX!0.61!6.01!NFIX;;chr7:137564372..137564394,-!p7@CREB3L2!0.61!5.52!CREB3L2;;chr5:92919100..92919135,+!p3@NR2F1!0.61!3.93!NR2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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000982;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002242;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007844;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10881.11252-116F1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10881.11252-116F1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10881.11252-116F1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10881.11252-116F1.hg38.nobarcode.ctss.bed.gz
|id=FF:11252-116F1
|is_a=EFO:0002091;;FF:0000123
|is_obsolete=
|library_id=CNhs10881
|library_id_phase_based=2:CNhs10881
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11252
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.ATGTCA.11252
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11252
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.ATGTCA.11252
|name=Nucleus Pulposus Cell, donor1
|namespace=FANTOM5
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|profile_srnaseq=SRhi10013,,,
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|rna_box=116
|rna_catalog_number=SC4805
|rna_concentration=0.9
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=lot:4769
|rna_od260/230=
|rna_od260/280=
|rna_position=F1
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=116F1
|rna_weight_ug=10
|rnaseq_library_id=SRhi10013.ATGTCA
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=nucleus pulposus cell of intervertebral disc
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.17483872578185e-227!GO:0043231;intracellular membrane-bound organelle;8.21447215242818e-183!GO:0043227;membrane-bound organelle;1.71062820946644e-182!GO:0043226;organelle;3.20108133815169e-181!GO:0043229;intracellular organelle;6.35084101140717e-181!GO:0005737;cytoplasm;6.06242210651115e-175!GO:0044444;cytoplasmic part;2.96827429532428e-128!GO:0044422;organelle part;5.98717629030862e-110!GO:0044446;intracellular organelle part;1.30669017405487e-108!GO:0044238;primary metabolic process;1.12903278016992e-89!GO:0044237;cellular metabolic process;2.00252891576909e-88!GO:0043170;macromolecule metabolic process;2.83115209614735e-82!GO:0032991;macromolecular complex;7.42732485350761e-77!GO:0005515;protein binding;5.81047504483359e-76!GO:0030529;ribonucleoprotein complex;7.35396923780911e-76!GO:0005634;nucleus;2.27302629514317e-70!GO:0043233;organelle lumen;6.21803076464959e-65!GO:0031974;membrane-enclosed lumen;6.21803076464959e-65!GO:0003723;RNA binding;2.35090501726853e-61!GO:0044428;nuclear part;2.7476682455024e-59!GO:0005739;mitochondrion;5.06052483751673e-56!GO:0010467;gene expression;2.02731360175156e-50!GO:0005840;ribosome;2.13354960268597e-47!GO:0031090;organelle membrane;6.427386400334e-47!GO:0043283;biopolymer metabolic process;1.61193205211414e-45!GO:0019538;protein metabolic process;1.80499249201654e-45!GO:0016043;cellular component organization and biogenesis;2.87349712345375e-44!GO:0006412;translation;8.20229969031294e-43!GO:0015031;protein transport;2.49165123797358e-42!GO:0033036;macromolecule localization;4.5711695884583e-42!GO:0003735;structural constituent of ribosome;2.1027984028263e-41!GO:0044260;cellular macromolecule metabolic process;2.50348360596853e-41!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.58212434761859e-40!GO:0044267;cellular protein metabolic process;1.16099013123548e-39!GO:0045184;establishment of protein localization;1.86868343932631e-39!GO:0008104;protein localization;2.51162848898477e-39!GO:0006396;RNA processing;8.9436632407218e-39!GO:0031981;nuclear lumen;1.38225811798535e-38!GO:0044429;mitochondrial part;7.2389823266155e-38!GO:0043234;protein complex;2.12630673485214e-36!GO:0009059;macromolecule biosynthetic process;7.88183396753849e-36!GO:0033279;ribosomal subunit;1.15980242235578e-35!GO:0009058;biosynthetic process;1.3343360614547e-35!GO:0005829;cytosol;2.24803352027241e-35!GO:0016071;mRNA metabolic process;8.74485796658967e-35!GO:0044249;cellular biosynthetic process;8.11228363297476e-32!GO:0008380;RNA splicing;2.34549108378036e-31!GO:0031967;organelle envelope;1.45459863447828e-30!GO:0031975;envelope;3.19607032218006e-30!GO:0006397;mRNA processing;2.41770779993895e-29!GO:0046907;intracellular transport;2.28370753082496e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.31837476352823e-28!GO:0003676;nucleic acid binding;1.20637035302249e-27!GO:0006886;intracellular protein transport;6.64575379787405e-27!GO:0065003;macromolecular complex assembly;7.10786451679388e-27!GO:0016070;RNA metabolic process;1.03994173120588e-25!GO:0005654;nucleoplasm;2.58569575048291e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.45331106769328e-25!GO:0005740;mitochondrial envelope;5.54232524420065e-24!GO:0022607;cellular component assembly;8.01360299268357e-24!GO:0031966;mitochondrial membrane;7.04139839751772e-23!GO:0005681;spliceosome;3.9426030496922e-22!GO:0019866;organelle inner membrane;5.94686908388416e-22!GO:0044451;nucleoplasm part;6.80287755090834e-22!GO:0008134;transcription factor binding;2.59295595661855e-21!GO:0006996;organelle organization and biogenesis;3.12636480592476e-21!GO:0005783;endoplasmic reticulum;3.56581977692952e-21!GO:0005743;mitochondrial inner membrane;1.17895109864576e-20!GO:0044445;cytosolic part;2.76709436285542e-20!GO:0006457;protein folding;2.44280381421703e-19!GO:0015935;small ribosomal subunit;2.9217792374461e-19!GO:0006119;oxidative phosphorylation;6.31687442831485e-19!GO:0012505;endomembrane system;8.87263135990026e-19!GO:0048770;pigment granule;3.50318124493715e-18!GO:0042470;melanosome;3.50318124493715e-18!GO:0043228;non-membrane-bound organelle;5.08663412287167e-18!GO:0043232;intracellular non-membrane-bound organelle;5.08663412287167e-18!GO:0005794;Golgi apparatus;5.18684694440523e-18!GO:0051649;establishment of cellular localization;1.98992882566822e-17!GO:0015934;large ribosomal subunit;2.16155586289482e-17!GO:0051641;cellular localization;3.61168593558142e-17!GO:0031980;mitochondrial lumen;3.67972962358778e-17!GO:0005759;mitochondrial matrix;3.67972962358778e-17!GO:0022618;protein-RNA complex assembly;4.37101467920439e-17!GO:0044432;endoplasmic reticulum part;5.50393121749331e-17!GO:0044455;mitochondrial membrane part;1.87682619306228e-16!GO:0006512;ubiquitin cycle;2.62251058346001e-16!GO:0016874;ligase activity;1.86318342971161e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.72688983257975e-15!GO:0050794;regulation of cellular process;6.98316453515035e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;8.01839144908507e-15!GO:0044265;cellular macromolecule catabolic process;1.28236914181585e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.28236914181585e-14!GO:0006259;DNA metabolic process;1.42708125103103e-14!GO:0019941;modification-dependent protein catabolic process;1.76903882222366e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.76903882222366e-14!GO:0006605;protein targeting;1.80306367222368e-14!GO:0016192;vesicle-mediated transport;2.46678739524365e-14!GO:0044257;cellular protein catabolic process;2.6642111300919e-14!GO:0016462;pyrophosphatase activity;2.98620001885757e-14!GO:0043285;biopolymer catabolic process;3.48744106868216e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.66213785916867e-14!GO:0005746;mitochondrial respiratory chain;3.81844621763737e-14!GO:0008135;translation factor activity, nucleic acid binding;3.8402572156179e-14!GO:0005730;nucleolus;3.90274092434777e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;4.30570201218541e-14!GO:0051186;cofactor metabolic process;4.80002366681793e-14!GO:0048193;Golgi vesicle transport;1.11019763905185e-13!GO:0017111;nucleoside-triphosphatase activity;1.24129421020747e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.74546474915323e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.08462759872854e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.35985412795683e-13!GO:0000166;nucleotide binding;9.42796096424698e-13!GO:0003712;transcription cofactor activity;1.14023551726422e-12!GO:0051082;unfolded protein binding;1.21640380897287e-12!GO:0005793;ER-Golgi intermediate compartment;1.21640380897287e-12!GO:0030163;protein catabolic process;1.50326009051718e-12!GO:0009057;macromolecule catabolic process;1.56351155845e-12!GO:0050136;NADH dehydrogenase (quinone) activity;2.44184974590955e-12!GO:0003954;NADH dehydrogenase activity;2.44184974590955e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.44184974590955e-12!GO:0044248;cellular catabolic process;2.44184974590955e-12!GO:0050789;regulation of biological process;3.13707486401959e-12!GO:0005761;mitochondrial ribosome;3.13707486401959e-12!GO:0000313;organellar ribosome;3.13707486401959e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.57847723869638e-12!GO:0005789;endoplasmic reticulum membrane;7.85174818642864e-12!GO:0006366;transcription from RNA polymerase II promoter;1.15401847702311e-11!GO:0003743;translation initiation factor activity;1.34308977564588e-11!GO:0006732;coenzyme metabolic process;2.51959318943757e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.47355626192098e-11!GO:0000375;RNA splicing, via transesterification reactions;3.47355626192098e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.47355626192098e-11!GO:0042775;organelle ATP synthesis coupled electron transport;5.13461228627745e-11!GO:0042773;ATP synthesis coupled electron transport;5.13461228627745e-11!GO:0006413;translational initiation;9.38810587366251e-11!GO:0043412;biopolymer modification;9.68324363862459e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.22853611717144e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.33009011465592e-10!GO:0045271;respiratory chain complex I;1.33009011465592e-10!GO:0005747;mitochondrial respiratory chain complex I;1.33009011465592e-10!GO:0019222;regulation of metabolic process;1.40952628092355e-10!GO:0016604;nuclear body;1.8784651469117e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.86400987583469e-10!GO:0006446;regulation of translational initiation;7.04805636785763e-10!GO:0048523;negative regulation of cellular process;7.39597500617509e-10!GO:0006913;nucleocytoplasmic transport;1.51399836816998e-09!GO:0006464;protein modification process;1.5410101420541e-09!GO:0012501;programmed cell death;3.84709091432755e-09!GO:0051169;nuclear transport;3.87703284570262e-09!GO:0045333;cellular respiration;3.90565487467085e-09!GO:0042254;ribosome biogenesis and assembly;4.63733011943713e-09!GO:0005768;endosome;4.7733014786829e-09!GO:0008565;protein transporter activity;6.61195719363105e-09!GO:0017038;protein import;6.86976828040787e-09!GO:0006915;apoptosis;7.8523619022625e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;8.1177192083122e-09!GO:0009060;aerobic respiration;8.51652735776242e-09!GO:0016607;nuclear speck;1.41564414064005e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.47364024899686e-08!GO:0008639;small protein conjugating enzyme activity;1.53277922855632e-08!GO:0008219;cell death;1.72492179216679e-08!GO:0016265;death;1.72492179216679e-08!GO:0019787;small conjugating protein ligase activity;2.0436405755765e-08!GO:0009150;purine ribonucleotide metabolic process;2.50782979817911e-08!GO:0006163;purine nucleotide metabolic process;2.545524571051e-08!GO:0004842;ubiquitin-protein ligase activity;2.55544547551877e-08!GO:0009259;ribonucleotide metabolic process;2.66254184534264e-08!GO:0009055;electron carrier activity;2.82584495792328e-08!GO:0006323;DNA packaging;3.1300713503836e-08!GO:0048519;negative regulation of biological process;3.98872740914119e-08!GO:0006461;protein complex assembly;4.78372193249258e-08!GO:0043687;post-translational protein modification;6.05137792095743e-08!GO:0016563;transcription activator activity;7.35035980812141e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.40859571138481e-08!GO:0031965;nuclear membrane;8.48836881528861e-08!GO:0009152;purine ribonucleotide biosynthetic process;8.48836881528861e-08!GO:0006164;purine nucleotide biosynthetic process;9.00421351847691e-08!GO:0065007;biological regulation;9.15682600029648e-08!GO:0006888;ER to Golgi vesicle-mediated transport;9.7250170841488e-08!GO:0031323;regulation of cellular metabolic process;9.83576619474409e-08!GO:0005635;nuclear envelope;1.02615706204697e-07!GO:0003713;transcription coactivator activity;1.04279015279389e-07!GO:0017076;purine nucleotide binding;1.17719902952657e-07!GO:0016491;oxidoreductase activity;1.21277155208956e-07!GO:0048475;coated membrane;1.48784253563999e-07!GO:0030117;membrane coat;1.48784253563999e-07!GO:0007049;cell cycle;1.75377922353095e-07!GO:0030120;vesicle coat;1.83331246224468e-07!GO:0030662;coated vesicle membrane;1.83331246224468e-07!GO:0044431;Golgi apparatus part;1.87351817218572e-07!GO:0006350;transcription;1.87498417382091e-07!GO:0009260;ribonucleotide biosynthetic process;1.95583957487557e-07!GO:0006099;tricarboxylic acid cycle;2.13195567211685e-07!GO:0046356;acetyl-CoA catabolic process;2.13195567211685e-07!GO:0016564;transcription repressor activity;2.39330638883075e-07!GO:0032553;ribonucleotide binding;2.44083615026683e-07!GO:0032555;purine ribonucleotide binding;2.44083615026683e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.5882664948389e-07!GO:0051276;chromosome organization and biogenesis;2.88746471596448e-07!GO:0009056;catabolic process;2.9498020690266e-07!GO:0031324;negative regulation of cellular metabolic process;2.95332035747862e-07!GO:0015986;ATP synthesis coupled proton transport;2.95332035747862e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.95332035747862e-07!GO:0003924;GTPase activity;3.2028201518392e-07!GO:0006974;response to DNA damage stimulus;3.96055015380455e-07!GO:0051246;regulation of protein metabolic process;4.10441855731576e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.54125551882824e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.54125551882824e-07!GO:0044440;endosomal part;4.68902337882e-07!GO:0010008;endosome membrane;4.68902337882e-07!GO:0005667;transcription factor complex;4.70667949878784e-07!GO:0016881;acid-amino acid ligase activity;5.24354674197893e-07!GO:0015980;energy derivation by oxidation of organic compounds;5.37412973919319e-07!GO:0005788;endoplasmic reticulum lumen;5.56961192198464e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.56961192198464e-07!GO:0010468;regulation of gene expression;6.89505799004577e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.08162544802782e-07!GO:0051187;cofactor catabolic process;7.10286128156252e-07!GO:0031982;vesicle;7.11801238526948e-07!GO:0009141;nucleoside triphosphate metabolic process;7.80360890177201e-07!GO:0031410;cytoplasmic vesicle;7.80360890177201e-07!GO:0009109;coenzyme catabolic process;8.58072552481934e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.58072552481934e-07!GO:0004386;helicase activity;8.58072552481934e-07!GO:0019829;cation-transporting ATPase activity;9.02866884368085e-07!GO:0006084;acetyl-CoA metabolic process;9.25166625586314e-07!GO:0031988;membrane-bound vesicle;9.45901147681325e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.50167067710483e-07!GO:0043566;structure-specific DNA binding;9.59993221500619e-07!GO:0044453;nuclear membrane part;1.06741076666068e-06!GO:0016568;chromatin modification;1.07306325940268e-06!GO:0005770;late endosome;1.07554228254723e-06!GO:0016887;ATPase activity;1.0808448803747e-06!GO:0046034;ATP metabolic process;1.15835780452979e-06!GO:0008026;ATP-dependent helicase activity;1.211762735526e-06!GO:0008361;regulation of cell size;1.42936860230286e-06!GO:0042623;ATPase activity, coupled;1.48213376898359e-06!GO:0051170;nuclear import;1.79487378733277e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.90070726365063e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.90070726365063e-06!GO:0016481;negative regulation of transcription;2.00504496467776e-06!GO:0051188;cofactor biosynthetic process;2.09940627864757e-06!GO:0006606;protein import into nucleus;2.10220674932288e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.14836157699699e-06!GO:0016049;cell growth;2.20451323166737e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.36468632927198e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.39254777179391e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.39254777179391e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.52250923881325e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.82459448031493e-06!GO:0009892;negative regulation of metabolic process;3.14642184689976e-06!GO:0005773;vacuole;3.70770963200443e-06!GO:0000151;ubiquitin ligase complex;3.73805263904444e-06!GO:0006754;ATP biosynthetic process;4.30092973690381e-06!GO:0006753;nucleoside phosphate metabolic process;4.30092973690381e-06!GO:0065002;intracellular protein transport across a membrane;4.52248845542414e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.55341089947213e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.61924448079842e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.76415752581432e-06!GO:0000245;spliceosome assembly;4.90319017230847e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.9341700581857e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.61440834385351e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.00590156654075e-06!GO:0004812;aminoacyl-tRNA ligase activity;6.00590156654075e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.00590156654075e-06!GO:0065004;protein-DNA complex assembly;6.09157827166203e-06!GO:0030532;small nuclear ribonucleoprotein complex;6.74492216270599e-06!GO:0001558;regulation of cell growth;7.22788713239593e-06!GO:0005798;Golgi-associated vesicle;7.25629779612577e-06!GO:0031252;leading edge;7.50144256629153e-06!GO:0006364;rRNA processing;7.87622722965776e-06!GO:0045786;negative regulation of progression through cell cycle;8.36253761094358e-06!GO:0032774;RNA biosynthetic process;8.94356567985883e-06!GO:0016859;cis-trans isomerase activity;8.94356567985883e-06!GO:0006091;generation of precursor metabolites and energy;8.94356567985883e-06!GO:0006613;cotranslational protein targeting to membrane;9.4786257484104e-06!GO:0006351;transcription, DNA-dependent;9.6754008220493e-06!GO:0042981;regulation of apoptosis;9.72897766929991e-06!GO:0043038;amino acid activation;9.83281219094677e-06!GO:0006418;tRNA aminoacylation for protein translation;9.83281219094677e-06!GO:0043039;tRNA aminoacylation;9.83281219094677e-06!GO:0045259;proton-transporting ATP synthase complex;1.01976314062606e-05!GO:0008654;phospholipid biosynthetic process;1.05998840087407e-05!GO:0043067;regulation of programmed cell death;1.12890946771372e-05!GO:0030133;transport vesicle;1.15258610413592e-05!GO:0016072;rRNA metabolic process;1.26047663670666e-05!GO:0032446;protein modification by small protein conjugation;1.26442867689438e-05!GO:0043069;negative regulation of programmed cell death;1.30146503517611e-05!GO:0003697;single-stranded DNA binding;1.37978731633499e-05!GO:0003714;transcription corepressor activity;1.49745517153603e-05!GO:0043066;negative regulation of apoptosis;1.58498219592469e-05!GO:0016853;isomerase activity;1.59894801588232e-05!GO:0000139;Golgi membrane;1.60438387545568e-05!GO:0006399;tRNA metabolic process;1.60438387545568e-05!GO:0000323;lytic vacuole;1.65520344179717e-05!GO:0005764;lysosome;1.65520344179717e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.73668937620276e-05!GO:0016567;protein ubiquitination;1.86520824849294e-05!GO:0006281;DNA repair;1.8790950783533e-05!GO:0005643;nuclear pore;1.97835740390296e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.33227034700348e-05!GO:0009117;nucleotide metabolic process;2.49970351700843e-05!GO:0009719;response to endogenous stimulus;2.53372356694578e-05!GO:0050657;nucleic acid transport;2.68361112110695e-05!GO:0051236;establishment of RNA localization;2.68361112110695e-05!GO:0050658;RNA transport;2.68361112110695e-05!GO:0000074;regulation of progression through cell cycle;2.69672461130267e-05!GO:0004298;threonine endopeptidase activity;2.74854031465327e-05!GO:0045449;regulation of transcription;2.85025619227571e-05!GO:0051726;regulation of cell cycle;2.91247064190451e-05!GO:0006333;chromatin assembly or disassembly;2.93365593115804e-05!GO:0009108;coenzyme biosynthetic process;3.15362208807074e-05!GO:0030554;adenyl nucleotide binding;3.37996330731837e-05!GO:0019843;rRNA binding;3.49217539112637e-05!GO:0006403;RNA localization;3.7958355947678e-05!GO:0006916;anti-apoptosis;4.18172334492659e-05!GO:0005525;GTP binding;4.21881882551783e-05!GO:0005524;ATP binding;4.24693248140603e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.3516262915072e-05!GO:0032559;adenyl ribonucleotide binding;5.62216463319458e-05!GO:0022402;cell cycle process;5.79136601404494e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.79752297356701e-05!GO:0051789;response to protein stimulus;5.95830479231626e-05!GO:0006986;response to unfolded protein;5.95830479231626e-05!GO:0007005;mitochondrion organization and biogenesis;6.16238489374115e-05!GO:0046930;pore complex;6.16238489374115e-05!GO:0005769;early endosome;6.379817099545e-05!GO:0030867;rough endoplasmic reticulum membrane;6.48845641315036e-05!GO:0051427;hormone receptor binding;7.86520487444372e-05!GO:0003724;RNA helicase activity;0.000100244717622388!GO:0019867;outer membrane;0.00011231803179947!GO:0043021;ribonucleoprotein binding;0.000120503542914431!GO:0045892;negative regulation of transcription, DNA-dependent;0.000148491035293818!GO:0031968;organelle outer membrane;0.000149039079864063!GO:0035257;nuclear hormone receptor binding;0.000156943836215019!GO:0005905;coated pit;0.000166808267216336!GO:0048522;positive regulation of cellular process;0.000173311154602827!GO:0019899;enzyme binding;0.000180110660215217!GO:0007243;protein kinase cascade;0.000183339344958215!GO:0040008;regulation of growth;0.000186515291014314!GO:0005741;mitochondrial outer membrane;0.000200619878481339!GO:0005791;rough endoplasmic reticulum;0.0002048507311422!GO:0032561;guanyl ribonucleotide binding;0.000213325885482015!GO:0019001;guanyl nucleotide binding;0.000213325885482015!GO:0006355;regulation of transcription, DNA-dependent;0.000232695680198616!GO:0006752;group transfer coenzyme metabolic process;0.000246494223257284!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000247194613424023!GO:0005762;mitochondrial large ribosomal subunit;0.000254300471202587!GO:0000315;organellar large ribosomal subunit;0.000254300471202587!GO:0033116;ER-Golgi intermediate compartment membrane;0.000280399800518985!GO:0051028;mRNA transport;0.000420473558867599!GO:0045893;positive regulation of transcription, DNA-dependent;0.000431654166053701!GO:0007264;small GTPase mediated signal transduction;0.000445213318514579!GO:0030029;actin filament-based process;0.000447686714567083!GO:0044262;cellular carbohydrate metabolic process;0.000463698563638704!GO:0016044;membrane organization and biogenesis;0.000465088573451942!GO:0006612;protein targeting to membrane;0.000511529479671422!GO:0000785;chromatin;0.000567532029053996!GO:0030663;COPI coated vesicle membrane;0.000583123826797349!GO:0030126;COPI vesicle coat;0.000583123826797349!GO:0005694;chromosome;0.00059089886662956!GO:0000314;organellar small ribosomal subunit;0.000592138607347706!GO:0005763;mitochondrial small ribosomal subunit;0.000592138607347706!GO:0008250;oligosaccharyl transferase complex;0.000592138607347706!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000669192916829287!GO:0004576;oligosaccharyl transferase activity;0.000688993622125422!GO:0005048;signal sequence binding;0.000706891322174396!GO:0016787;hydrolase activity;0.000720652336280551!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000747228235458894!GO:0030521;androgen receptor signaling pathway;0.000760884497436749!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000775663841721654!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000776932800407114!GO:0030027;lamellipodium;0.000782005936753183!GO:0045941;positive regulation of transcription;0.00084034157534319!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000841196752145455!GO:0003729;mRNA binding;0.000849137906556059!GO:0043623;cellular protein complex assembly;0.000918605715112041!GO:0003690;double-stranded DNA binding;0.000923581514729734!GO:0045454;cell redox homeostasis;0.00095178485948878!GO:0046474;glycerophospholipid biosynthetic process;0.000996927390738264!GO:0008186;RNA-dependent ATPase activity;0.00104367648935256!GO:0046467;membrane lipid biosynthetic process;0.00106007456700112!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00111791468458431!GO:0030137;COPI-coated vesicle;0.00112559893087009!GO:0006793;phosphorus metabolic process;0.00115683374148677!GO:0006796;phosphate metabolic process;0.00115683374148677!GO:0005581;collagen;0.00115683374148677!GO:0003702;RNA polymerase II transcription factor activity;0.00118126167131775!GO:0005885;Arp2/3 protein complex;0.00119117217930109!GO:0051920;peroxiredoxin activity;0.00121491192831361!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00144600713605337!GO:0046914;transition metal ion binding;0.00148609412476355!GO:0006891;intra-Golgi vesicle-mediated transport;0.0016014468581567!GO:0008610;lipid biosynthetic process;0.00160265880296722!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00160335206829238!GO:0051287;NAD binding;0.00161460329065248!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00180497422681514!GO:0018196;peptidyl-asparagine modification;0.00198754186911282!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00198754186911282!GO:0006414;translational elongation;0.00199039904932162!GO:0000278;mitotic cell cycle;0.00207012017681424!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00214545064811288!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00214545064811288!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00214545064811288!GO:0043488;regulation of mRNA stability;0.00215852352234666!GO:0043487;regulation of RNA stability;0.00215852352234666!GO:0016740;transferase activity;0.00217576169789979!GO:0048500;signal recognition particle;0.00219766255734179!GO:0004177;aminopeptidase activity;0.00223494265900077!GO:0008154;actin polymerization and/or depolymerization;0.00224428429585296!GO:0048471;perinuclear region of cytoplasm;0.00224663859436274!GO:0006260;DNA replication;0.00234591573282041!GO:0043284;biopolymer biosynthetic process;0.00239489301344817!GO:0051252;regulation of RNA metabolic process;0.00244725259633995!GO:0006352;transcription initiation;0.00254351504643626!GO:0006402;mRNA catabolic process;0.00256275210949488!GO:0016779;nucleotidyltransferase activity;0.00266249427372867!GO:0046489;phosphoinositide biosynthetic process;0.00267153994532296!GO:0043681;protein import into mitochondrion;0.00271028808918617!GO:0007050;cell cycle arrest;0.00275403553207269!GO:0050662;coenzyme binding;0.00284644044634632!GO:0004004;ATP-dependent RNA helicase activity;0.0028727599424051!GO:0006334;nucleosome assembly;0.00306754739824501!GO:0031072;heat shock protein binding;0.00321403176273448!GO:0030118;clathrin coat;0.00322540724618618!GO:0008092;cytoskeletal protein binding;0.00343746519063397!GO:0051128;regulation of cellular component organization and biogenesis;0.00349056208637657!GO:0003899;DNA-directed RNA polymerase activity;0.00363886077455045!GO:0030041;actin filament polymerization;0.00383603388760791!GO:0031497;chromatin assembly;0.00393383599487296!GO:0030134;ER to Golgi transport vesicle;0.0039878406432431!GO:0016126;sterol biosynthetic process;0.00410108739961202!GO:0031901;early endosome membrane;0.00413423142926861!GO:0005813;centrosome;0.0042831989667955!GO:0016197;endosome transport;0.00428772198831357!GO:0031902;late endosome membrane;0.00428772198831357!GO:0008270;zinc ion binding;0.0043136672813349!GO:0006509;membrane protein ectodomain proteolysis;0.00434204102541341!GO:0033619;membrane protein proteolysis;0.00434204102541341!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00438565199799697!GO:0006979;response to oxidative stress;0.00440293784150658!GO:0051101;regulation of DNA binding;0.00470721044652904!GO:0048518;positive regulation of biological process;0.00484810690953085!GO:0030658;transport vesicle membrane;0.00486535457498323!GO:0030518;steroid hormone receptor signaling pathway;0.0049562648685592!GO:0030199;collagen fibril organization;0.00507159002800629!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00511257943526595!GO:0045047;protein targeting to ER;0.00511257943526595!GO:0045045;secretory pathway;0.00511257943526595!GO:0016310;phosphorylation;0.00570825775675009!GO:0008312;7S RNA binding;0.00585306902201867!GO:0044427;chromosomal part;0.0059022732261984!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00592665870441108!GO:0030132;clathrin coat of coated pit;0.00615508591723424!GO:0005869;dynactin complex;0.00657019763188032!GO:0030127;COPII vesicle coat;0.00661289977495093!GO:0012507;ER to Golgi transport vesicle membrane;0.00661289977495093!GO:0016408;C-acyltransferase activity;0.00666716257930892!GO:0031625;ubiquitin protein ligase binding;0.00681610339880975!GO:0035258;steroid hormone receptor binding;0.00689842226925365!GO:0016363;nuclear matrix;0.00703498822678882!GO:0003711;transcription elongation regulator activity;0.00710730274611045!GO:0005815;microtubule organizing center;0.00788181308403241!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00810013070213609!GO:0030880;RNA polymerase complex;0.00811020342742149!GO:0009165;nucleotide biosynthetic process;0.00819380429523765!GO:0051168;nuclear export;0.00849254230792379!GO:0001726;ruffle;0.00858032101512853!GO:0006626;protein targeting to mitochondrion;0.00859290641998607!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00885166827000334!GO:0048487;beta-tubulin binding;0.00891861970822959!GO:0033673;negative regulation of kinase activity;0.00910742554477926!GO:0006469;negative regulation of protein kinase activity;0.00910742554477926!GO:0006897;endocytosis;0.00912335397467938!GO:0010324;membrane invagination;0.00912335397467938!GO:0006740;NADPH regeneration;0.00913453554113636!GO:0006098;pentose-phosphate shunt;0.00913453554113636!GO:0051087;chaperone binding;0.00935096602788103!GO:0005520;insulin-like growth factor binding;0.00974741826877912!GO:0006383;transcription from RNA polymerase III promoter;0.00985086188293637!GO:0042158;lipoprotein biosynthetic process;0.00987110004225268!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00991422857047735!GO:0033043;regulation of organelle organization and biogenesis;0.00991422857047735!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00996643728559026!GO:0017166;vinculin binding;0.0101088620799559!GO:0044420;extracellular matrix part;0.0101088620799559!GO:0006650;glycerophospholipid metabolic process;0.010485025015933!GO:0065009;regulation of a molecular function;0.0107094222271491!GO:0016251;general RNA polymerase II transcription factor activity;0.0107605158901646!GO:0050681;androgen receptor binding;0.0107820061642508!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0108482584877349!GO:0015002;heme-copper terminal oxidase activity;0.0108482584877349!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0108482584877349!GO:0004129;cytochrome-c oxidase activity;0.0108482584877349!GO:0015630;microtubule cytoskeleton;0.0108815156461385!GO:0009967;positive regulation of signal transduction;0.011379488346948!GO:0008180;signalosome;0.011647565333427!GO:0030176;integral to endoplasmic reticulum membrane;0.0117848478570996!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0118921545422662!GO:0015399;primary active transmembrane transporter activity;0.0118921545422662!GO:0000059;protein import into nucleus, docking;0.0118936107694382!GO:0006338;chromatin remodeling;0.0124819367440571!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0125506191660287!GO:0006497;protein amino acid lipidation;0.0125855523212706!GO:0043022;ribosome binding;0.0126894707446528!GO:0008047;enzyme activator activity;0.01303135281673!GO:0051539;4 iron, 4 sulfur cluster binding;0.0130792615701674!GO:0030384;phosphoinositide metabolic process;0.0132721697619711!GO:0030119;AP-type membrane coat adaptor complex;0.0132721697619711!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0132721697619711!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0132721697619711!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0135020890033196!GO:0006695;cholesterol biosynthetic process;0.0135574324582305!GO:0030660;Golgi-associated vesicle membrane;0.0135600636992243!GO:0006595;polyamine metabolic process;0.0139199139456987!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0139986424642308!GO:0006376;mRNA splice site selection;0.0144370323659361!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0144370323659361!GO:0005774;vacuolar membrane;0.0148251962605767!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0150491617855779!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0157241433009815!GO:0000428;DNA-directed RNA polymerase complex;0.0157241433009815!GO:0031543;peptidyl-proline dioxygenase activity;0.0163668548823746!GO:0051348;negative regulation of transferase activity;0.016464424401167!GO:0008139;nuclear localization sequence binding;0.0170665823214064!GO:0030659;cytoplasmic vesicle membrane;0.0170916012875362!GO:0000339;RNA cap binding;0.0171500843303879!GO:0008286;insulin receptor signaling pathway;0.0171736117586315!GO:0003677;DNA binding;0.0174853597783689!GO:0051059;NF-kappaB binding;0.0176175342626104!GO:0022890;inorganic cation transmembrane transporter activity;0.0178364254455249!GO:0006892;post-Golgi vesicle-mediated transport;0.0178364254455249!GO:0031124;mRNA 3'-end processing;0.0180098915986479!GO:0035035;histone acetyltransferase binding;0.018420770135544!GO:0051540;metal cluster binding;0.0189915502458745!GO:0051536;iron-sulfur cluster binding;0.0189915502458745!GO:0050811;GABA receptor binding;0.0202854017266644!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0210051308020284!GO:0006607;NLS-bearing substrate import into nucleus;0.0210473110434855!GO:0051329;interphase of mitotic cell cycle;0.0210473110434855!GO:0005862;muscle thin filament tropomyosin;0.0211140477179439!GO:0006401;RNA catabolic process;0.0211140477179439!GO:0031406;carboxylic acid binding;0.0212369004223334!GO:0016584;nucleosome positioning;0.0215255820719648!GO:0030522;intracellular receptor-mediated signaling pathway;0.0216394870568126!GO:0030131;clathrin adaptor complex;0.0216733136971886!GO:0005100;Rho GTPase activator activity;0.0219727003966086!GO:0005832;chaperonin-containing T-complex;0.0225638924089453!GO:0007040;lysosome organization and biogenesis;0.0227268223813544!GO:0007010;cytoskeleton organization and biogenesis;0.0227268223813544!GO:0032984;macromolecular complex disassembly;0.0228152333161694!GO:0031529;ruffle organization and biogenesis;0.022967435559233!GO:0008097;5S rRNA binding;0.0235813800253513!GO:0048468;cell development;0.0236621269504726!GO:0007006;mitochondrial membrane organization and biogenesis;0.0240039167457092!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0247663529248941!GO:0030833;regulation of actin filament polymerization;0.0247663529248941!GO:0006739;NADP metabolic process;0.0248428584355499!GO:0006818;hydrogen transport;0.0248650749344281!GO:0045792;negative regulation of cell size;0.0250970115046643!GO:0015992;proton transport;0.0251753929859741!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0254062759728583!GO:0008147;structural constituent of bone;0.0257550998863227!GO:0006506;GPI anchor biosynthetic process;0.026055879789015!GO:0016407;acetyltransferase activity;0.0262033985534598!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0264562138993156!GO:0005669;transcription factor TFIID complex;0.0265096612377803!GO:0019798;procollagen-proline dioxygenase activity;0.0266216788252839!GO:0005586;collagen type III;0.0266563268162218!GO:0000118;histone deacetylase complex;0.0267469967437268!GO:0007265;Ras protein signal transduction;0.0268287810375878!GO:0051098;regulation of binding;0.0271592924855186!GO:0006289;nucleotide-excision repair;0.0275982397486446!GO:0006505;GPI anchor metabolic process;0.0279368141905388!GO:0005583;fibrillar collagen;0.0282777532474371!GO:0007033;vacuole organization and biogenesis;0.0289345351890864!GO:0005096;GTPase activator activity;0.0291464876485231!GO:0006635;fatty acid beta-oxidation;0.0291464876485231!GO:0007034;vacuolar transport;0.0296063236530126!GO:0031418;L-ascorbic acid binding;0.0296063236530126!GO:0006643;membrane lipid metabolic process;0.0296680960441083!GO:0030308;negative regulation of cell growth;0.0296864070606476!GO:0032940;secretion by cell;0.030221345048448!GO:0000209;protein polyubiquitination;0.0309084458054531!GO:0043087;regulation of GTPase activity;0.0317178526472886!GO:0005765;lysosomal membrane;0.0325973552770074!GO:0006417;regulation of translation;0.0325973552770074!GO:0004860;protein kinase inhibitor activity;0.0330130803946885!GO:0003746;translation elongation factor activity;0.0330802807325234!GO:0031272;regulation of pseudopodium formation;0.0332766181817737!GO:0031269;pseudopodium formation;0.0332766181817737!GO:0031344;regulation of cell projection organization and biogenesis;0.0332766181817737!GO:0031268;pseudopodium organization and biogenesis;0.0332766181817737!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0332766181817737!GO:0031274;positive regulation of pseudopodium formation;0.0332766181817737!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.033510933358331!GO:0006839;mitochondrial transport;0.0336971810311892!GO:0043624;cellular protein complex disassembly;0.0340053650474263!GO:0044437;vacuolar part;0.0340053650474263!GO:0005637;nuclear inner membrane;0.0348117770192906!GO:0006118;electron transport;0.0352348366309972!GO:0016860;intramolecular oxidoreductase activity;0.0352348366309972!GO:0019752;carboxylic acid metabolic process;0.0355044359586789!GO:0000902;cell morphogenesis;0.0355131583664154!GO:0032989;cellular structure morphogenesis;0.0355131583664154!GO:0004722;protein serine/threonine phosphatase activity;0.0355608640028509!GO:0009303;rRNA transcription;0.0355608640028509!GO:0006769;nicotinamide metabolic process;0.0355608640028509!GO:0044433;cytoplasmic vesicle part;0.0356791329945091!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0359122163555903!GO:0030100;regulation of endocytosis;0.0359824268752046!GO:0008234;cysteine-type peptidase activity;0.0360301637746323!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.03626768787172!GO:0042802;identical protein binding;0.03626768787172!GO:0032535;regulation of cellular component size;0.0364000315333928!GO:0032906;transforming growth factor-beta2 production;0.0366803432976748!GO:0032909;regulation of transforming growth factor-beta2 production;0.0366803432976748!GO:0015631;tubulin binding;0.0371009197701997!GO:0009081;branched chain family amino acid metabolic process;0.0374845388854063!GO:0030125;clathrin vesicle coat;0.0377543736449587!GO:0030665;clathrin coated vesicle membrane;0.0377543736449587!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0379553198060623!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0379553198060623!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0382806659467078!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0392016250670228!GO:0004784;superoxide dismutase activity;0.0392016250670228!GO:0005811;lipid particle;0.039220356516272!GO:0043241;protein complex disassembly;0.039634311501594!GO:0051235;maintenance of localization;0.0400453351465535!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0401051954315521!GO:0051325;interphase;0.0402948857102202!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0403700665226883!GO:0006082;organic acid metabolic process;0.0404856860632919!GO:0030832;regulation of actin filament length;0.0407382631599154!GO:0030032;lamellipodium biogenesis;0.0410318521992395!GO:0044452;nucleolar part;0.0410848989595022!GO:0006693;prostaglandin metabolic process;0.0412233245329114!GO:0006692;prostanoid metabolic process;0.0412233245329114!GO:0009966;regulation of signal transduction;0.0427981104236718!GO:0040029;regulation of gene expression, epigenetic;0.0429688140922024!GO:0005684;U2-dependent spliceosome;0.043222655443527!GO:0006354;RNA elongation;0.0434210755167221!GO:0030145;manganese ion binding;0.04361558463273!GO:0016791;phosphoric monoester hydrolase activity;0.0438062400492389!GO:0048037;cofactor binding;0.0440810700364555!GO:0017134;fibroblast growth factor binding;0.0444336571316692!GO:0030934;anchoring collagen;0.0445114257293489!GO:0030031;cell projection biogenesis;0.0448359043615017!GO:0017091;AU-rich element binding;0.0452171581678834!GO:0050779;RNA destabilization;0.0452171581678834!GO:0000289;poly(A) tail shortening;0.0452171581678834!GO:0012506;vesicle membrane;0.0452171581678834!GO:0045185;maintenance of protein localization;0.0459300651754963!GO:0005017;platelet-derived growth factor receptor activity;0.0459571091396909!GO:0009112;nucleobase metabolic process;0.0461470587803496!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0461470587803496!GO:0007021;tubulin folding;0.0463631658300267!GO:0043492;ATPase activity, coupled to movement of substances;0.0464381320158304!GO:0007569;cell aging;0.0466931938424617!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0469863562484664!GO:0004300;enoyl-CoA hydratase activity;0.0474547953451617!GO:0046620;regulation of organ growth;0.0477052614533152!GO:0031123;RNA 3'-end processing;0.0479339069326749!GO:0046483;heterocycle metabolic process;0.0482828380722397!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0491661227926347!GO:0005784;translocon complex;0.0493637462914731!GO:0000049;tRNA binding;0.0494749542884554!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0494749542884554!GO:0003923;GPI-anchor transamidase activity;0.0498800019625776!GO:0016255;attachment of GPI anchor to protein;0.0498800019625776!GO:0042765;GPI-anchor transamidase complex;0.0498800019625776!GO:0008430;selenium binding;0.0499351287533497
|sample_id=11252
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=spinal cord
|top_motifs=RXR{A,B,G}:2.12980632281;ATF6:1.81646133565;ZNF238:1.72012135982;FOXL1:1.67922778419;NKX6-1,2:1.50256264308;PATZ1:1.44460740172;TAL1_TCF{3,4,12}:1.43239177531;NR3C1:1.31043779343;GZF1:1.30513826296;MYBL2:1.30037005789;SOX5:1.2709778008;ZNF423:1.26964796969;NR1H4:1.24284856898;EBF1:1.14894579499;NANOG{mouse}:1.146367387;MZF1:1.08985304621;TFAP4:1.07229972722;GFI1B:1.02501224255;KLF4:0.993960954076;MAZ:0.99130200645;NFATC1..3:0.957602693528;GTF2I:0.942194656936;GTF2A1,2:0.93494122119;TLX1..3_NFIC{dimer}:0.930793871064;GLI1..3:0.878520630007;ESR1:0.871073408776;EN1,2:0.835105188167;AIRE:0.833805091995;NR6A1:0.830716794916;PAX5:0.83049406295;TEAD1:0.797027427841;DMAP1_NCOR{1,2}_SMARC:0.796249451141;ZIC1..3:0.790247761842;ZNF384:0.775231527895;UFEwm:0.760521701758;PDX1:0.739698411192;AHR_ARNT_ARNT2:0.735689081937;STAT2,4,6:0.720871643939;NFIX:0.713382356709;STAT1,3:0.707532315656;NKX2-2,8:0.703630695215;MED-1{core}:0.7010661746;HAND1,2:0.698307284206;PAX1,9:0.674138181991;NKX2-3_NKX2-5:0.670963263256;BPTF:0.663936620323;SRF:0.652445445229;PAX4:0.646536837039;RBPJ:0.632233373921;FOXD3:0.627714829933;TFCP2:0.626384089625;NKX2-1,4:0.617603061992;YY1:0.616980287083;PRDM1:0.604919142054;FOXO1,3,4:0.596741101526;ALX4:0.596561035059;MAFB:0.594470849382;MYFfamily:0.573473371716;GATA4:0.572974432047;FOX{I1,J2}:0.569134472117;HOX{A5,B5}:0.556839350804;IKZF1:0.553343692263;ZBTB6:0.552827622805;SMAD1..7,9:0.52630948375;SPZ1:0.501130357218;RREB1:0.49123824487;NHLH1,2:0.479629855129;HES1:0.470591015023;HSF1,2:0.4590617406;DBP:0.42621868747;GCM1,2:0.421402134569;MTE{core}:0.418667650414;PRRX1,2:0.405148380283;EGR1..3:0.403519885931;SP1:0.359248827192;FOX{D1,D2}:0.359058870477;XBP1:0.358258538277;MTF1:0.346444886199;HOX{A6,A7,B6,B7}:0.340977734209;TEF:0.321643300594;TBX4,5:0.298485148721;EVI1:0.297278365481;HMGA1,2:0.242991391244;LHX3,4:0.239752924708;LEF1_TCF7_TCF7L1,2:0.230136906387;MEF2{A,B,C,D}:0.223741762366;RFX2..5_RFXANK_RFXAP:0.223008185689;AR:0.206175071016;CDX1,2,4:0.200944899532;TFAP2{A,C}:0.198711786575;TBP:0.175880353314;ARID5B:0.172157290751;ESRRA:0.163737881893;NFE2L2:0.150323598525;SREBF1,2:0.121545563321;FOXN1:0.114268353041;HNF1A:0.103604831627;HMX1:0.100968645041;RFX1:0.0956038658676;HOX{A4,D4}:0.0898017193567;STAT5{A,B}:0.0809738525727;RUNX1..3:0.07828820894;TFAP2B:0.0693682241809;HNF4A_NR2F1,2:0.0688708277302;HIF1A:0.0661835212898;RXRA_VDR{dimer}:0.0502127434837;SOX17:0.0411772733817;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0332605964062;FOXP3:0.0270060201098;HIC1:0.022511311376;HLF:0.0154342612976;BREu{core}:-0.0058107524859;FOXA2:-0.00906555463974;PAX8:-0.0128631737633;NKX3-2:-0.0177802224837;NFE2:-0.0363260970057;ZFP161:-0.0384549651862;ADNP_IRX_SIX_ZHX:-0.0496064500637;NFE2L1:-0.0515218362176;POU6F1:-0.0560544872994;BACH2:-0.0589023569964;FOXQ1:-0.059007581863;TGIF1:-0.0735888761317;ZNF143:-0.0751179739198;NKX3-1:-0.0754392238664;FOX{F1,F2,J1}:-0.0914676950081;ATF2:-0.0945410041792;ONECUT1,2:-0.0985937381353;GFI1:-0.100295065619;EP300:-0.111801301038;IRF1,2:-0.117608122672;NFIL3:-0.125227533872;TP53:-0.1265344565;TOPORS:-0.141506611875;CDC5L:-0.142207449254;REST:-0.153208763279;CUX2:-0.157315304009;PAX6:-0.158130015921;ELK1,4_GABP{A,B1}:-0.167916413465;POU5F1:-0.170066593648;XCPE1{core}:-0.202759248497;CEBPA,B_DDIT3:-0.213206627369;FOSL2:-0.213556200868;IKZF2:-0.216608898171;FOS_FOS{B,L1}_JUN{B,D}:-0.229780824078;T:-0.238597484807;bHLH_family:-0.247570438593;PBX1:-0.261467635931;ATF4:-0.267350855906;CRX:-0.291527666382;NR5A1,2:-0.312283178897;IRF7:-0.329661165206;NRF1:-0.330854770849;NFKB1_REL_RELA:-0.335828679092;SOX2:-0.340019383527;RORA:-0.354261467603;CREB1:-0.358155813325;ZNF148:-0.366002322756;ATF5_CREB3:-0.381289500048;POU2F1..3:-0.393936836473;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.415983588606;FOXM1:-0.442604864234;SNAI1..3:-0.495612907441;JUN:-0.510319844874;POU3F1..4:-0.521159659447;HBP1_HMGB_SSRP1_UBTF:-0.523684564459;ETS1,2:-0.530236738235;SPI1:-0.546096488547;GATA6:-0.550699410648;TFDP1:-0.553036061934;ELF1,2,4:-0.59792877401;SPIB:-0.650794833553;PAX2:-0.672894205657;MYB:-0.675741191356;E2F1..5:-0.711350847851;FOXP1:-0.721035170954;ZBTB16:-0.754705478094;POU1F1:-0.757238124276;ZEB1:-0.769030909033;PPARG:-0.854662730769;NFY{A,B,C}:-0.943155167789;PAX3,7:-0.944887550873;SOX{8,9,10}:-0.986386566843;VSX1,2:-0.986872961502;LMO2:-1.05333782159;NANOG:-1.05988697046;TLX2:-1.08916683936;HOXA9_MEIS1:-1.08944303223;OCT4_SOX2{dimer}:-1.10739857045;ALX1:-1.13934212611;PITX1..3:-1.37172971577;MYOD1:-1.3983883299
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11252-116F1;search_select_hide=table117:FF:11252-116F1
}}
}}

Latest revision as of 16:28, 3 June 2020

Name:Nucleus Pulposus Cell, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10881
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuespinal cord
dev stageNA
sexunknown
ageNA
cell typenucleus pulposus cell of intervertebral disc
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:4769
catalog numberSC4805
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005285
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10881 CAGE DRX008381 DRR009253
Accession ID Hg19

Library idBAMCTSS
CNhs10881 DRZ000678 DRZ002063
Accession ID Hg38

Library idBAMCTSS
CNhs10881 DRZ012028 DRZ013413
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005285
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.ATGTCA sRNA-Seq DRX037216 DRR041582
Accession ID Hg19

Library idBAMCTSS
SRhi10013.ATGTCA DRZ007224


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.391
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0953
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.393
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.00156
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.435
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.173
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.538
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.187
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.18
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.208
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.429
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.206
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.136
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0953
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0481
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.516
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0257
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0503
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.489
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.322
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.323
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.269
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.434
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10881

Jaspar motifP-value
MA0002.20.0371
MA0003.10.676
MA0004.10.0724
MA0006.10.449
MA0007.10.978
MA0009.10.414
MA0014.10.227
MA0017.10.88
MA0018.20.0037
MA0019.10.534
MA0024.12.56633e-4
MA0025.10.0229
MA0027.10.619
MA0028.10.0137
MA0029.10.563
MA0030.10.582
MA0031.10.132
MA0035.20.139
MA0038.10.689
MA0039.20.00555
MA0040.10.11
MA0041.10.239
MA0042.10.221
MA0043.10.0892
MA0046.10.884
MA0047.20.236
MA0048.10.424
MA0050.10.0283
MA0051.10.324
MA0052.10.928
MA0055.10.0805
MA0057.10.319
MA0058.10.0922
MA0059.10.0159
MA0060.13.2945e-8
MA0061.10.269
MA0062.25.57062e-9
MA0065.20.275
MA0066.10.836
MA0067.10.0325
MA0068.10.00549
MA0069.10.129
MA0070.10.88
MA0071.10.649
MA0072.10.377
MA0073.10.483
MA0074.10.235
MA0076.10.00914
MA0077.10.0465
MA0078.10.384
MA0079.20.475
MA0080.25.36553e-9
MA0081.10.0108
MA0083.13.66125e-4
MA0084.10.0523
MA0087.10.153
MA0088.10.906
MA0090.10.00318
MA0091.10.00326
MA0092.10.641
MA0093.10.06
MA0099.20.00426
MA0100.10.472
MA0101.10.00932
MA0102.20.272
MA0103.18.4184e-4
MA0104.20.0164
MA0105.10.967
MA0106.10.739
MA0107.10.0141
MA0108.20.144
MA0111.10.544
MA0112.20.568
MA0113.10.0235
MA0114.10.599
MA0115.10.519
MA0116.10.975
MA0117.10.141
MA0119.10.265
MA0122.10.977
MA0124.10.0537
MA0125.10.822
MA0131.10.699
MA0135.10.175
MA0136.11.8159e-10
MA0137.20.00512
MA0138.20.995
MA0139.10.84
MA0140.10.0313
MA0141.10.985
MA0142.10.335
MA0143.10.518
MA0144.10.091
MA0145.10.418
MA0146.10.708
MA0147.10.00344
MA0148.10.0631
MA0149.10.0218
MA0150.10.0116
MA0152.10.015
MA0153.10.158
MA0154.10.487
MA0155.10.295
MA0156.11.45992e-9
MA0157.10.116
MA0159.10.392
MA0160.10.0886
MA0162.10.726
MA0163.10.693
MA0164.10.823
MA0258.10.277
MA0259.10.0887



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10881

Novel motifP-value
10.248
100.272
1000.417
1010.576
1020.0155
1030.355
1040.661
1050.717
1060.765
1070.0205
1080.954
1090.0474
110.32
1100.454
1110.143
1120.217
1130.103
1140.414
1150.634
1160.295
1170.151
1180.545
1190.138
120.114
1200.236
1210.161
1220.0153
1239.37425e-6
1240.261
1250.125
1260.875
1270.0873
1280.319
1290.653
130.0696
1300.25
1310.0577
1320.0109
1330.819
1340.64
1350.554
1360.8
1370.0751
1380.21
1390.461
140.912
1400.217
1410.03
1420.893
1430.264
1440.151
1450.654
1460.549
1470.482
1480.958
1490.117
150.147
1500.895
1510.633
1520.683
1530.549
1540.278
1550.113
1560.252
1570.764
1580.0449
1590.472
160.584
1600.436
1610.775
1620.159
1630.835
1640.811
1650.556
1660.323
1670.102
1680.696
1690.236
170.87
180.932
190.0998
20.174
200.822
210.752
220.217
230.818
240.85
250.235
260.345
270.551
280.383
290.617
30.913
300.104
310.436
327.96639e-6
330.947
340.666
350.769
360.0372
370.619
380.337
390.363
40.0146
400.0043
410.0165
420.757
430.497
440.836
450.232
460.988
470.0938
480.207
490.286
50.741
500.457
510.606
520.566
530.121
540.718
550.708
560.844
570.447
580.373
590.12
60.385
600.591
610.381
620.563
630.832
640.266
650.907
660.271
670.515
680.556
690.606
70.245
700.546
710.13
720.794
730.815
740.338
750.208
760.633
770.449
780.353
790.052
80.98
800.974
810.585
820.661
830.982
840.294
850.789
860.741
870.11
880.2
890.147
90.308
900.464
910.497
920.581
930.303
940.58
950.031
960.679
970.448
980.343
990.00273



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10881


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002564 (nucleus pulposus cell of intervertebral disc)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004905 (articulation)
0011135 (intervertebral cartilage)
0000075 (subdivision of skeletal system)
0002216 (symphysis)
0004765 (skeletal element)
0011134 (nonsynovial joint)
0002209 (fibrous joint)
0002213 (cartilaginous joint)
0000982 (skeletal joint)
0010317 (germ layer / neural crest derived structure)
0007844 (cartilage element)
0002242 (nucleus pulposus)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
0011138 (post-cranial axial skeletal system)
0001130 (vertebral column)
0001066 (intervertebral disk)
0001468 (intervertebral joint)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000123 (human nucleus pulposus cell of intervertebral disc sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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