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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008393
|DRA_sample_Accession=CAGE@SAMD00005800
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005800
|accession_numbers=CAGE;DRX008501;DRR009373;DRZ000798;DRZ002183;DRZ012148;DRZ013533
|accession_numbers_RNASeq=sRNA-Seq;DRX037048;DRR041414;DRZ007056
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0003834,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0001533,UBERON:0004535,UBERON:0004571,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0003834,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0001533,UBERON:0004535,UBERON:0004571,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002595
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002595
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr9:132427883..132427951,+!p2@PRRX2!1.78!59.00!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.75!70.57!PRRX2;;chr8:55370487..55370503,+!p1@SOX17!1.69!47.97!SOX17;;chr7:27153454..27153469,-!p2@HOXA3!1.65!43.56!HOXA3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!36.94!ZBED1;;chr7:27170359..27170381,-!p1@HOXA4!1.50!30.88!HOXA4;;chr18:19749541..19749557,+!p1@GATA6!1.46!84.91!GATA6;;chr11:46299199..46299233,+!p1@CREB3L1!1.44!131.22!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.44!44.66!CREB3L1;;chr18:53068911..53068935,-!p4@TCF4!1.42!28.67!TCF4;;chr2:239756671..239756732,+!p1@TWIST2!1.41!78.29!TWIST2;;chr11:65686802..65686818,+!p6@DRAP1!1.39!40.80!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!1.39!23.71!HAND2;;chr19:13134772..13134822,+!p2@NFIX!1.38!33.63!NFIX;;chr1:170632285..170632309,+!p1@PRRX1!1.38!25.91!PRRX1;;chr22:19748231..19748317,+!p1@TBX1!1.38!23.16!TBX1;;chr19:47523058..47523114,+!p1@NPAS1!1.33!20.40!NPAS1;;chr16:86600426..86600441,+!p1@FOXC2!1.32!48.52!FOXC2;;chr16:86544113..86544145,+!p1@FOXF1!1.32!24.81!FOXF1;;chr20:6748325..6748352,+!p1@BMP2!1.31!28.12!BMP2;;chr18:19749386..19749404,+!p2@GATA6!1.31!27.57!GATA6;;chr7:27183291..27183324,-!p1@HOXA5!1.27!17.64!HOXA5;;chr6:10415276..10415341,-!p2@TFAP2A!1.26!20.95!TFAP2A;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.50!PRRX1;;chr3:25470156..25470227,+!p2@RARB!1.22!15.44!RARB;;chr7:27183263..27183284,-!p2@HOXA5!1.22!15.44!HOXA5;;chr6:10412600..10412637,-!p1@TFAP2A!1.21!25.36!TFAP2A;;chr7:27153428..27153440,-!p3@HOXA3!1.19!14.34!HOXA3;;chr4:174450089..174450153,-!p2@HAND2!1.19!14.34!HAND2;;chr15:57511609..57511651,+!p2@TCF12!1.18!23.71!TCF12;;chr1:170633262..170633285,+!p3@PRRX1!1.18!15.99!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.13!375.48!HMGA1;;chr12:124873357..124873401,-!p1@NCOR2!1.13!144.46!NCOR2;;chr2:239756739..239756755,+!p2@TWIST2!1.11!20.40!TWIST2;;chr7:27142290..27142310,-!p1@HOXA2!1.10!11.58!HOXA2;;chr2:121493425..121493474,+!p1@GLI2!1.09!24.81!GLI2;;chr11:65687362..65687436,+!p3@DRAP1!1.08!50.73!DRAP1;;chr3:25469815..25469866,+!p3@RARB!1.08!11.03!RARB;;chr7:27170274..27170308,-!p3@HOXA4!1.08!11.03!HOXA4;;chr8:106330656..106330684,+!p1@ZFPM2!1.07!28.67!ZFPM2;;chr5:72744445..72744466,-!p2@FOXD1!1.06!17.64!FOXD1;;chr12:53614115..53614154,-!p1@RARG!1.05!55.69!RARG;;chr17:1959369..1959388,+!p2@HIC1!1.05!27.57!HIC1;;chr2:121493492..121493537,+!p2@GLI2!1.02!15.99!GLI2;;chr8:106330696..106330719,+!p2@ZFPM2!1.00!11.58!ZFPM2;;chr4:81104985..81105005,+!p4@PRDM8!1.00!11.03!PRDM8;;chr4:81105027..81105039,+!p3@PRDM8!1.00!10.48!PRDM8;;chr14:62162258..62162269,+!p2@HIF1A!0.99!87.12!HIF1A;;chr11:65686732..65686756,+!p2@DRAP1!0.99!38.04!DRAP1;;chr15:96869114..96869160,+!p11@NR2F2!0.99!12.13!NR2F2;;chr2:172967621..172967637,-!p1@DLX2!0.98!23.71!DLX2;;chr2:85981073..85981091,+!p5@ATOH8!0.97!8.27!ATOH8;;chr11:46299443..46299459,+!p4@CREB3L1!0.97!8.27!CREB3L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.97!8.27!TFAP2A;;chr7:27153590..27153608,-!p7@HOXA3!0.97!8.27!HOXA3;;chr7:27169801..27169844,-!p2@HOXA4!0.97!8.27!HOXA4;;chr1:8938709..8938720,-!p3@ENO1!0.94!385.96!ENO1;;chr15:67430351..67430366,+!p10@SMAD3!0.94!7.72!SMAD3;;chr15:67458491..67458505,+!p18@SMAD3!0.94!7.72!SMAD3;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.84!FOXD1;;chr5:321810..321877,+!p1@AHRR!0.92!24.26!AHRR;;chr19:13134457..13134462,+!p5@NFIX!0.92!13.23!NFIX;;chr3:128206762..128206781,-!p2@GATA2!0.91!46.87!GATA2;;chr12:124873852..124873881,-!p3@NCOR2!0.91!45.21!NCOR2;;chr7:27183191..27183214,-!p4@HOXA5!0.91!7.17!HOXA5;;chr17:46622070..46622109,-!p1@HOXB2!0.90!15.99!HOXB2;;chr20:30193083..30193098,+!p1@ID1!0.89!568.46!ID1;;chr14:62162285..62162296,+!p3@HIF1A!0.89!36.94!HIF1A;;chr10:131762504..131762555,-!p1@EBF3!0.88!6.62!EBF3;;chr16:86600870..86600921,+!p2@FOXC2!0.88!6.62!FOXC2;;chr2:85981107..85981120,+!p3@ATOH8!0.88!6.62!ATOH8;;chr7:27183325..27183338,-!p5@HOXA5!0.88!6.62!HOXA5;;chr1:23885981..23886002,-!p1@ID3!0.87!1190.95!ID3;;chr1:170632959..170632987,+!p4@PRRX1!0.87!7.17!PRRX1;;chr11:46299186..46299195,+!p3@CREB3L1!0.87!7.17!CREB3L1;;chr17:46622114..46622138,-!p4@HOXB2!0.86!9.92!HOXB2;;chr11:65667884..65667895,-!p2@FOSL1!0.85!24.81!FOSL1;;chr2:19558373..19558392,-!p1@OSR1!0.85!17.64!OSR1;;chr7:137686763..137686784,-!p5@CREB3L2!0.85!11.03!CREB3L2;;chr7:27170324..27170335,-!p7@HOXA4!0.85!6.07!HOXA4;;chr13:37494248..37494260,-!p3@SMAD9!0.85!6.07!SMAD9;;chr19:13135386..13135435,+!p4@NFIX!0.85!6.07!NFIX;;chr1:170632439..170632465,+!p11@PRRX1!0.85!6.07!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.85!6.07!PRRX1;;chr2:172967242..172967265,-!p2@DLX2!0.85!6.07!DLX2;;chr14:24837368..24837401,+!p1@NFATC4!0.83!14.34!NFATC4;;chr19:13136130..13136165,+!p6@NFIX!0.83!7.72!NFIX;;chr3:141105705..141105770,+!p4@ZBTB38!0.83!7.17!ZBTB38;;chr11:65687243..65687276,+!p8@DRAP1!0.82!7.72!DRAP1;;chr15:67418177..67418204,+!p9@SMAD3!0.81!5.51!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!0.81!5.51!ETV4;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.51!GATA6;;chr1:170632115..170632136,+!p9@PRRX1!0.81!5.51!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.80!152.73!FOSL1;;chr2:185463247..185463263,+!p1@ZNF804A!0.80!9.92!ZNF804A;;chr21:36260295..36260310,-!p3@RUNX1!0.80!8.82!RUNX1;;chr12:54447599..54447630,+!p3@HOXC4!0.80!6.62!HOXC4;;chr1:151032860..151032918,+!p1@MLLT11!0.79!66.72!MLLT11;;chr12:115121962..115121987,-!p1@TBX3!0.79!47.42!TBX3;;chr3:141121847..141121868,+!p5@ZBTB38!0.79!8.27!ZBTB38;;chr2:200322654..200322707,-!p2@SATB2!0.79!7.72!SATB2;;chr17:41623692..41623715,-!p1@ETV4!0.78!23.16!ETV4;;chr18:19749517..19749531,+!p3@GATA6!0.78!9.37!GATA6;;chr7:1577899..1577943,+!p3@MAFK!0.78!4.96!MAFK;;chr1:170633058..170633084,+!p5@PRRX1!0.78!4.96!PRRX1;;chr19:45251943..45252006,+!p1@BCL3!0.76!138.94!BCL3;;chr12:66218598..66218645,+!p2@HMGA2!0.76!24.26!HMGA2;;chr2:85981222..85981259,+!p2@ATOH8!0.76!8.27!ATOH8;;chr11:65687222..65687240,+!p7@DRAP1!0.75!6.07!DRAP1;;chr10:77161504..77161530,-!p1@ZNF503!0.74!66.16!ZNF503;;chr2:85980951..85981004,+!p1@ATOH8!0.74!7.72!ATOH8;;chr2:66662281..66662308,+!p1@MEIS1!0.73!16.54!MEIS1;;chr6:1610293..1610310,+!p1@FOXC1!0.73!7.72!FOXC1;;chr4:81118647..81118666,+!p1@PRDM8!0.73!6.07!PRDM8;;chr15:67418119..67418162,+!p5@SMAD3!0.73!4.96!SMAD3;;chr15:96869165..96869183,+!p20@NR2F2!0.73!4.41!NR2F2;;chr2:172949484..172949522,+!p1@DLX1!0.73!4.41!DLX1;;chr2:172950227..172950249,+!p2@DLX1!0.73!4.41!DLX1;;chr2:172967276..172967296,-!p3@DLX2!0.73!4.41!DLX2;;chr1:170632683..170632696,+!p12@PRRX1!0.73!4.41!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.73!4.41!PRRX1;;chr7:27170042..27170064,-!p4@HOXA4!0.73!4.41!HOXA4;;chr8:40755333..40755352,-!p1@ZMAT4!0.73!4.41!ZMAT4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!341.30!TAX1BP3;;chr4:81104895..81104920,+!p2@PRDM8!0.72!6.62!PRDM8;;chr19:38720294..38720348,-!p1@DPF1!0.72!5.51!DPF1;;chr3:141087393..141087426,+!p3@ZBTB38!0.71!18.20!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.71!6.62!ETV4;;chr4:81104958..81104981,+!p5@PRDM8!0.71!4.96!PRDM8;;chr6:85474299..85474324,-!p1@TBX18!0.70!7.72!TBX18;;chr17:46621937..46621966,-!p2@HOXB2!0.69!11.58!HOXB2;;chr6:85473156..85473210,-!p2@TBX18!0.69!4.96!TBX18;;chr7:27153443..27153450,-!p8@HOXA3!0.69!3.86!HOXA3;;chr7:27153613..27153630,-!p6@HOXA3!0.69!3.86!HOXA3;;chr7:35293685..35293718,-!p1@TBX20!0.69!3.86!TBX20;;chr1:170632250..170632277,+!p7@PRRX1!0.69!3.86!PRRX1;;chr2:172967353..172967365,-!p5@DLX2!0.69!3.86!DLX2;;chr2:8819364..8819390,+!p2@ID2!0.69!3.86!ID2;;chr12:54447637..54447659,+!p4@HOXC4!0.69!3.86!HOXC4;;chr15:67418047..67418093,+!p4@SMAD3!0.68!4.96!SMAD3;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.41!TFAP2A;;chr1:8938766..8938774,-!p2@ENO1!0.67!293.33!ENO1;;chr19:13106214..13106382,+!p1@NFIX!0.67!99.25!NFIX;;chr6:34204973..34204990,+!p4@HMGA1!0.67!56.79!HMGA1;;chr20:48599506..48599526,+!p1@SNAI1!0.67!27.02!SNAI1;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.16!DRAP1;;chr2:71127699..71127744,+!p1@VAX2!0.67!8.27!VAX2;;chr19:45250948..45250998,+!p3@BCL3!0.66!9.92!BCL3;;chr3:25469724..25469773,+!p1@RARB!0.66!5.51!RARB;;chr8:72756267..72756296,-!p4@MSC!0.66!5.51!MSC;;chr1:8938736..8938756,-!p1@ENO1!0.65!4439.59!ENO1;;chr19:47922750..47922795,-!p1@MEIS3!0.65!6.07!MEIS3;;chr7:137686552..137686564,-!p9@CREB3L2!0.65!5.51!CREB3L2;;chr16:88519669..88519726,+!p1@ZFPM1!0.64!35.29!ZFPM1;;chr2:85360499..85360598,+!p1@TCF7L1!0.63!21.50!TCF7L1;;chr8:77593474..77593612,+!p1@ZFHX4!0.63!15.99!ZFHX4;;chr12:66218255..66218304,+!p3@HMGA2!0.63!9.92!HMGA2;;chr12:125002827..125002855,-!p5@NCOR2!0.63!4.96!NCOR2;;chr2:176994408..176994492,+!p1@HOXD8!0.63!3.31!HOXD8;;chr19:52076425..52076440,+!p2@ZNF175!0.63!3.31!ZNF175;;chr11:65687158..65687216,+!p4@DRAP1!0.62!21.50!DRAP1;;chr3:170076314..170076334,+!p2@SKIL!0.62!4.41!SKIL;;chr11:65686776..65686787,+!p9@DRAP1!0.62!3.86!DRAP1;;chr9:4300050..4300118,-!p1@GLIS3!0.61!23.71!GLIS3;;chr15:96873861..96873872,+!p9@NR2F2!0.61!7.17!NR2F2;;chr6:34204672..34204692,+!p1@HMGA1!0.60!406.36!HMGA1;;chr15:96874244..96874259,+!p5@NR2F2!0.60!8.27!NR2F2;;chr6:1389789..1389821,+!p1@FOXF2!0.60!4.41!FOXF2;;chr3:52001426..52001447,-!p3@PCBP4!0.59!9.37!PCBP4;;chr8:72756063..72756125,-!p1@MSC!0.59!6.62!MSC;;chr1:37940102..37940131,+!p2@ZC3H12A!0.59!6.62!ZC3H12A;;chr8:145159846..145159889,+!p6@MAF1!0.59!4.41!MAF1;;chr15:66994615..66994630,+!p3@SMAD6!0.59!4.41!SMAD6;;chr12:26277929..26277955,-!p3@BHLHE41!0.59!4.41!BHLHE41;;chr12:66218443..66218461,+!p8@HMGA2!0.59!3.86!HMGA2;;chr15:96874145..96874166,+!p7@NR2F2!0.58!6.07!NR2F2;;chr12:80085061..80085119,-!p6@PAWR!0.58!4.96!PAWR;;chr6:126070769..126070801,+!p1@HEY2!0.58!3.31!HEY2;;chr1:164528445..164528459,+!p2@PBX1!0.57!9.92!PBX1;;chr17:59477233..59477263,+!p1@TBX2!0.57!9.92!TBX2;;chr17:46655704..46655718,-!p2@HOXB4!0.57!4.41!HOXB4;;chr15:67458861..67458879,+!p17@SMAD3!0.57!2.76!SMAD3;;chr16:31076332..31076388,-!p3@ZNF668!0.57!2.76!ZNF668;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.76!NR3C1;;chr6:10415484..10415508,-!p3@TFAP2A!0.57!2.76!TFAP2A;;chr7:27183114..27183138,-!p3@HOXA5!0.57!2.76!HOXA5;;chr8:106330543..106330554,+!p4@ZFPM2!0.57!2.76!ZFPM2;;chr8:2590287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hr7:96654133..96654150,-!p1@DLX5!0.19!0.55!DLX5;;chr7:99680193..99680204,-!p2@ZNF3!0.19!0.55!ZNF3;;chr7:99680302..99680329,-!p5@ZNF3!0.19!0.55!ZNF3;;chr8:103666204..103666218,-!p8@KLF10!0.19!0.55!KLF10;;chr8:128747846..128747860,+!p15@MYC!0.19!0.55!MYC;;chr8:55370693..55370704,+!p4@SOX17!0.19!0.55!SOX17;;chr8:55370720..55370733,+!p2@SOX17!0.19!0.55!SOX17;;chr8:72755203..72755239,-!p10@MSC!0.19!0.55!MSC;;chr8:72755345..72755349,-!p14@MSC!0.19!0.55!MSC;;chr8:77593750..77593757,+!p3@ZFHX4!0.19!0.55!ZFHX4;;chr8:93031384..93031395,-!p34@RUNX1T1!0.19!0.55!RUNX1T1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.19!0.55!RUNX1T1;;chr9:115819058..115819082,-!p2@ZFP37!0.19!0.55!ZFP37;;chr15:31618889..31618902,+!p15@KLF13!0.19!0.55!KLF13;;chr15:31684663..31684717,+!p10@KLF13!0.19!0.55!KLF13;;chr15:35280823..35280852,-!p6@ZNF770!0.19!0.55!ZNF770;;chr15:57211275..57211290,+!p14@TCF12!0.19!0.55!TCF12;;chr15:57212066..57212091,+!p13@TCF12!0.19!0.55!TCF12;;chr15:57511589..57511608,+!p4@TCF12!0.19!0.55!TCF12;;chr15:61521462..61521482,-!p4@RORA!0.19!0.55!RORA;;chr15:61521495..61521506,-!p5@RORA!0.19!0.55!RORA;;chr15:66994718..66994729,+!p4@SMAD6!0.19!0.55!SMAD6;;chr15:67459116..67459123,+!p23@SMAD3!0.19!0.55!SMAD3;;chr15:80696666..80696700,+!p4@ARNT2!0.19!0.55!ARNT2;;chr15:83953474..83953483,-!p3@BNC1!0.19!0.55!BNC1;;chr15:90294087..90294115,-!p1@MESP1!0.19!0.55!MESP1;;chr15:90545434..90545449,+!p9@ZNF710!0.19!0.55!ZNF710;;chr15:96880438..96880445,+!p23@NR2F2!0.19!0.55!NR2F2;;chr16:29819630..29819645,+!p37@MAZ!0.19!0.55!MAZ;;chr16:30406101..30406114,+!p6@ZNF48!0.19!0.55!ZNF48;;chr16:67197654..67197716,+!p3@HSF4!0.19!0.55!HSF4;;chr16:67198633..67198671,+!p1@HSF4!0.19!0.55!HSF4;;chr16:86601088..86601105,+!p5@FOXC2!0.19!0.55!FOXC2;;chr16:8963020..8963054,-!p6@CARHSP1!0.19!0.55!CARHSP1;;chr17:17740823..17740833,-!p8@SREBF1!0.19!0.55!SREBF1;;chr17:38497715..38497734,+!p8@RARA!0.19!0.55!RARA;;chr17:40440446..40440464,+!p5@STAT5A!0.19!0.55!STAT5A;;chr17:40540591..40540600,-!p3@STAT3!0.19!0.55!STAT3;;chr17:41622901..41622913,-!p16@ETV4!0.19!0.55!ETV4;;chr17:46621146..46621180,-!p10@HOXB2!0.19!0.55!HOXB2;;chr17:46622143..46622152,-!p14@HOXB2!0.19!0.55!HOXB2;;chr17:46667594..46667619,-!p1@HOXB3!0.19!0.55!HOXB3;;chr17:46667628..46667642,-!p2@HOXB3!0.19!0.55!HOXB3;;chr17:59477266..59477273,+!p6@TBX2!0.19!0.55!TBX2;;chr17:7382810..7382822,-!p12@ZBTB4!0.19!0.55!ZBTB4;;chr17:7578548..7578563,-!p7@TP53!0.19!0.55!TP53;;chr18:19751305..19751324,+!p9@GATA6!0.19!0.55!GATA6;;chr18:22931979..22931992,-!p3@ZNF521!0.19!0.55!ZNF521;;chr18:22932004..22932021,-!p2@ZNF521!0.19!0.55!ZNF521;;chr18:22932208..22932219,-!p6@ZNF521!0.19!0.55!ZNF521;;chr18:46477549..46477578,-!p7@SMAD7!0.19!0.55!SMAD7;;chr18:53069201..53069216,-!p39@TCF4!0.19!0.55!TCF4;;chr18:53177899..53177918,-!p33@TCF4!0.19!0.55!TCF4;;chr18:53255323..53255332,-!p31@TCF4!0.19!0.55!TCF4;;chr18:72922730..72922733,+!p5@TSHZ1!0.19!0.55!TSHZ1;;chr19:10416315..10416333,-!p1@ZGLP1!0.19!0.55!ZGLP1;;chr19:11750543..11750565,+!p2@ZNF833P!0.19!0.55!ZNF833P;;chr19:12444399..12444415,-!p5@ZNF563!0.19!0.55!ZNF563;;chr19:13136166..13136177,+!p40@NFIX!0.19!0.55!NFIX;;chr19:13213634..13213645,-!p8@LYL1!0.19!0.55!LYL1;;chr19:2867325..2867348,+!p1@ZNF556!0.19!0.55!ZNF556;;chr19:32836483..32836490,+!p4@ZNF507!0.19!0.55!ZNF507;;
|expression_enrichment_score=chr9:132427883..132427951,+!p2@PRRX2!1.78!59.00!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.75!70.57!PRRX2;;chr8:55370487..55370503,+!p1@SOX17!1.69!47.97!SOX17;;chr7:27153454..27153469,-!p2@HOXA3!1.65!43.56!HOXA3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!36.94!ZBED1;;chr7:27170359..27170381,-!p1@HOXA4!1.50!30.88!HOXA4;;chr18:19749541..19749557,+!p1@GATA6!1.46!84.91!GATA6;;chr11:46299199..46299233,+!p1@CREB3L1!1.44!131.22!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.44!44.66!CREB3L1;;chr18:53068911..53068935,-!p4@TCF4!1.42!28.67!TCF4;;chr2:239756671..239756732,+!p1@TWIST2!1.41!78.29!TWIST2;;chr11:65686802..65686818,+!p6@DRAP1!1.39!40.80!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!1.39!23.71!HAND2;;chr19:13134772..13134822,+!p2@NFIX!1.38!33.63!NFIX;;chr1:170632285..170632309,+!p1@PRRX1!1.38!25.91!PRRX1;;chr22:19748231..19748317,+!p1@TBX1!1.38!23.16!TBX1;;chr19:47523058..47523114,+!p1@NPAS1!1.33!20.40!NPAS1;;chr16:86600426..86600441,+!p1@FOXC2!1.32!48.52!FOXC2;;chr16:86544113..86544145,+!p1@FOXF1!1.32!24.81!FOXF1;;chr20:6748325..6748352,+!p1@BMP2!1.31!28.12!BMP2;;chr18:19749386..19749404,+!p2@GATA6!1.31!27.57!GATA6;;chr7:27183291..27183324,-!p1@HOXA5!1.27!17.64!HOXA5;;chr6:10415276..10415341,-!p2@TFAP2A!1.26!20.95!TFAP2A;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.50!PRRX1;;chr3:25470156..25470227,+!p2@RARB!1.22!15.44!RARB;;chr7:27183263..27183284,-!p2@HOXA5!1.22!15.44!HOXA5;;chr6:10412600..10412637,-!p1@TFAP2A!1.21!25.36!TFAP2A;;chr7:27153428..27153440,-!p3@HOXA3!1.19!14.34!HOXA3;;chr4:174450089..174450153,-!p2@HAND2!1.19!14.34!HAND2;;chr15:57511609..57511651,+!p2@TCF12!1.18!23.71!TCF12;;chr1:170633262..170633285,+!p3@PRRX1!1.18!15.99!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.13!375.48!HMGA1;;chr12:124873357..124873401,-!p1@NCOR2!1.13!144.46!NCOR2;;chr2:239756739..239756755,+!p2@TWIST2!1.11!20.40!TWIST2;;chr7:27142290..27142310,-!p1@HOXA2!1.10!11.58!HOXA2;;chr2:121493425..121493474,+!p1@GLI2!1.09!24.81!GLI2;;chr11:65687362..65687436,+!p3@DRAP1!1.08!50.73!DRAP1;;chr3:25469815..25469866,+!p3@RARB!1.08!11.03!RARB;;chr7:27170274..27170308,-!p3@HOXA4!1.08!11.03!HOXA4;;chr8:106330656..106330684,+!p1@ZFPM2!1.07!28.67!ZFPM2;;chr5:72744445..72744466,-!p2@FOXD1!1.06!17.64!FOXD1;;chr12:53614115..53614154,-!p1@RARG!1.05!55.69!RARG;;chr17:1959369..1959388,+!p2@HIC1!1.05!27.57!HIC1;;chr2:121493492..121493537,+!p2@GLI2!1.02!15.99!GLI2;;chr8:106330696..106330719,+!p2@ZFPM2!1.00!11.58!ZFPM2;;chr4:81104985..81105005,+!p4@PRDM8!1.00!11.03!PRDM8;;chr4:81105027..81105039,+!p3@PRDM8!1.00!10.48!PRDM8;;chr14:62162258..62162269,+!p2@HIF1A!0.99!87.12!HIF1A;;chr11:65686732..65686756,+!p2@DRAP1!0.99!38.04!DRAP1;;chr15:96869114..96869160,+!p11@NR2F2!0.99!12.13!NR2F2;;chr2:172967621..172967637,-!p1@DLX2!0.98!23.71!DLX2;;chr2:85981073..85981091,+!p5@ATOH8!0.97!8.27!ATOH8;;chr11:46299443..46299459,+!p4@CREB3L1!0.97!8.27!CREB3L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.97!8.27!TFAP2A;;chr7:27153590..27153608,-!p7@HOXA3!0.97!8.27!HOXA3;;chr7:27169801..27169844,-!p2@HOXA4!0.97!8.27!HOXA4;;chr1:8938709..8938720,-!p3@ENO1!0.94!385.96!ENO1;;chr15:67430351..67430366,+!p10@SMAD3!0.94!7.72!SMAD3;;chr15:67458491..67458505,+!p18@SMAD3!0.94!7.72!SMAD3;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.84!FOXD1;;chr5:321810..321877,+!p1@AHRR!0.92!24.26!AHRR;;chr19:13134457..13134462,+!p5@NFIX!0.92!13.23!NFIX;;chr3:128206762..128206781,-!p2@GATA2!0.91!46.87!GATA2;;chr12:124873852..124873881,-!p3@NCOR2!0.91!45.21!NCOR2;;chr7:27183191..27183214,-!p4@HOXA5!0.91!7.17!HOXA5;;chr17:46622070..46622109,-!p1@HOXB2!0.90!15.99!HOXB2;;chr20:30193083..30193098,+!p1@ID1!0.89!568.46!ID1;;chr14:62162285..62162296,+!p3@HIF1A!0.89!36.94!HIF1A;;chr10:131762504..131762555,-!p1@EBF3!0.88!6.62!EBF3;;chr16:86600870..86600921,+!p2@FOXC2!0.88!6.62!FOXC2;;chr2:85981107..85981120,+!p3@ATOH8!0.88!6.62!ATOH8;;chr7:27183325..27183338,-!p5@HOXA5!0.88!6.62!HOXA5;;chr1:23885981..23886002,-!p1@ID3!0.87!1190.95!ID3;;chr1:170632959..170632987,+!p4@PRRX1!0.87!7.17!PRRX1;;chr11:46299186..46299195,+!p3@CREB3L1!0.87!7.17!CREB3L1;;chr17:46622114..46622138,-!p4@HOXB2!0.86!9.92!HOXB2;;chr11:65667884..65667895,-!p2@FOSL1!0.85!24.81!FOSL1;;chr2:19558373..19558392,-!p1@OSR1!0.85!17.64!OSR1;;chr7:137686763..137686784,-!p5@CREB3L2!0.85!11.03!CREB3L2;;chr7:27170324..27170335,-!p7@HOXA4!0.85!6.07!HOXA4;;chr13:37494248..37494260,-!p3@SMAD9!0.85!6.07!SMAD9;;chr19:13135386..13135435,+!p4@NFIX!0.85!6.07!NFIX;;chr1:170632439..170632465,+!p11@PRRX1!0.85!6.07!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.85!6.07!PRRX1;;chr2:172967242..172967265,-!p2@DLX2!0.85!6.07!DLX2;;chr14:24837368..24837401,+!p1@NFATC4!0.83!14.34!NFATC4;;chr19:13136130..13136165,+!p6@NFIX!0.83!7.72!NFIX;;chr3:141105705..141105770,+!p4@ZBTB38!0.83!7.17!ZBTB38;;chr11:65687243..65687276,+!p8@DRAP1!0.82!7.72!DRAP1;;chr15:67418177..67418204,+!p9@SMAD3!0.81!5.51!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!0.81!5.51!ETV4;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.51!GATA6;;chr1:170632115..170632136,+!p9@PRRX1!0.81!5.51!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.80!152.73!FOSL1;;chr2:185463247..185463263,+!p1@ZNF804A!0.80!9.92!ZNF804A;;chr21:36260295..36260310,-!p3@RUNX1!0.80!8.82!RUNX1;;chr12:54447599..54447630,+!p3@HOXC4!0.80!6.62!HOXC4;;chr1:151032860..151032918,+!p1@MLLT11!0.79!66.72!MLLT11;;chr12:115121962..115121987,-!p1@TBX3!0.79!47.42!TBX3;;chr3:141121847..141121868,+!p5@ZBTB38!0.79!8.27!ZBTB38;;chr2:200322654..200322707,-!p2@SATB2!0.79!7.72!SATB2;;chr17:41623692..41623715,-!p1@ETV4!0.78!23.16!ETV4;;chr18:19749517..19749531,+!p3@GATA6!0.78!9.37!GATA6;;chr7:1577899..1577943,+!p3@MAFK!0.78!4.96!MAFK;;chr1:170633058..170633084,+!p5@PRRX1!0.78!4.96!PRRX1;;chr19:45251943..45252006,+!p1@BCL3!0.76!138.94!BCL3;;chr12:66218598..66218645,+!p2@HMGA2!0.76!24.26!HMGA2;;chr2:85981222..85981259,+!p2@ATOH8!0.76!8.27!ATOH8;;chr11:65687222..65687240,+!p7@DRAP1!0.75!6.07!DRAP1;;chr10:77161504..77161530,-!p1@ZNF503!0.74!66.16!ZNF503;;chr2:85980951..85981004,+!p1@ATOH8!0.74!7.72!ATOH8;;chr2:66662281..66662308,+!p1@MEIS1!0.73!16.54!MEIS1;;chr6:1610293..1610310,+!p1@FOXC1!0.73!7.72!FOXC1;;chr4:81118647..81118666,+!p1@PRDM8!0.73!6.07!PRDM8;;chr15:67418119..67418162,+!p5@SMAD3!0.73!4.96!SMAD3;;chr15:96869165..96869183,+!p20@NR2F2!0.73!4.41!NR2F2;;chr2:172949484..172949522,+!p1@DLX1!0.73!4.41!DLX1;;chr2:172950227..172950249,+!p2@DLX1!0.73!4.41!DLX1;;chr2:172967276..172967296,-!p3@DLX2!0.73!4.41!DLX2;;chr1:170632683..170632696,+!p12@PRRX1!0.73!4.41!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.73!4.41!PRRX1;;chr7:27170042..27170064,-!p4@HOXA4!0.73!4.41!HOXA4;;chr8:40755333..40755352,-!p1@ZMAT4!0.73!4.41!ZMAT4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!341.30!TAX1BP3;;chr4:81104895..81104920,+!p2@PRDM8!0.72!6.62!PRDM8;;chr19:38720294..38720348,-!p1@DPF1!0.72!5.51!DPF1;;chr3:141087393..141087426,+!p3@ZBTB38!0.71!18.20!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.71!6.62!ETV4;;chr4:81104958..81104981,+!p5@PRDM8!0.71!4.96!PRDM8;;chr6:85474299..85474324,-!p1@TBX18!0.70!7.72!TBX18;;chr17:46621937..46621966,-!p2@HOXB2!0.69!11.58!HOXB2;;chr6:85473156..85473210,-!p2@TBX18!0.69!4.96!TBX18;;chr7:27153443..27153450,-!p8@HOXA3!0.69!3.86!HOXA3;;chr7:27153613..27153630,-!p6@HOXA3!0.69!3.86!HOXA3;;chr7:35293685..35293718,-!p1@TBX20!0.69!3.86!TBX20;;chr1:170632250..170632277,+!p7@PRRX1!0.69!3.86!PRRX1;;chr2:172967353..172967365,-!p5@DLX2!0.69!3.86!DLX2;;chr2:8819364..8819390,+!p2@ID2!0.69!3.86!ID2;;chr12:54447637..54447659,+!p4@HOXC4!0.69!3.86!HOXC4;;chr15:67418047..67418093,+!p4@SMAD3!0.68!4.96!SMAD3;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.41!TFAP2A;;chr1:8938766..8938774,-!p2@ENO1!0.67!293.33!ENO1;;chr19:13106214..13106382,+!p1@NFIX!0.67!99.25!NFIX;;chr6:34204973..34204990,+!p4@HMGA1!0.67!56.79!HMGA1;;chr20:48599506..48599526,+!p1@SNAI1!0.67!27.02!SNAI1;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.16!DRAP1;;chr2:71127699..71127744,+!p1@VAX2!0.67!8.27!VAX2;;chr19:45250948..45250998,+!p3@BCL3!0.66!9.92!BCL3;;chr3:25469724..25469773,+!p1@RARB!0.66!5.51!RARB;;chr8:72756267..72756296,-!p4@MSC!0.66!5.51!MSC;;chr1:8938736..8938756,-!p1@ENO1!0.65!4439.59!ENO1;;chr19:47922750..47922795,-!p1@MEIS3!0.65!6.07!MEIS3;;chr7:137686552..137686564,-!p9@CREB3L2!0.65!5.51!CREB3L2;;chr16:88519669..88519726,+!p1@ZFPM1!0.64!35.29!ZFPM1;;chr2:85360499..85360598,+!p1@TCF7L1!0.63!21.50!TCF7L1;;chr8:77593474..77593612,+!p1@ZFHX4!0.63!15.99!ZFHX4;;chr12:66218255..66218304,+!p3@HMGA2!0.63!9.92!HMGA2;;chr12:125002827..125002855,-!p5@NCOR2!0.63!4.96!NCOR2;;chr2:176994408..176994492,+!p1@HOXD8!0.63!3.31!HOXD8;;chr19:52076425..52076440,+!p2@ZNF175!0.63!3.31!ZNF175;;chr11:65687158..65687216,+!p4@DRAP1!0.62!21.50!DRAP1;;chr3:170076314..170076334,+!p2@SKIL!0.62!4.41!SKIL;;chr11:65686776..65686787,+!p9@DRAP1!0.62!3.86!DRAP1;;chr9:4300050..4300118,-!p1@GLIS3!0.61!23.71!GLIS3;;chr15:96873861..96873872,+!p9@NR2F2!0.61!7.17!NR2F2;;chr6:34204672..34204692,+!p1@HMGA1!0.60!406.36!HMGA1;;chr15:96874244..96874259,+!p5@NR2F2!0.60!8.27!NR2F2;;chr6:1389789..1389821,+!p1@FOXF2!0.60!4.41!FOXF2;;chr3:52001426..52001447,-!p3@PCBP4!0.59!9.37!PCBP4;;chr8:72756063..72756125,-!p1@MSC!0.59!6.62!MSC;;chr1:37940102..37940131,+!p2@ZC3H12A!0.59!6.62!ZC3H12A;;chr8:145159846..145159889,+!p6@MAF1!0.59!4.41!MAF1;;chr15:66994615..66994630,+!p3@SMAD6!0.59!4.41!SMAD6;;chr12:26277929..26277955,-!p3@BHLHE41!0.59!4.41!BHLHE41;;chr12:66218443..66218461,+!p8@HMGA2!0.59!3.86!HMGA2;;chr15:96874145..96874166,+!p7@NR2F2!0.58!6.07!NR2F2;;chr12:80085061..80085119,-!p6@PAWR!0.58!4.96!PAWR;;chr6:126070769..126070801,+!p1@HEY2!0.58!3.31!HEY2;;chr1:164528445..164528459,+!p2@PBX1!0.57!9.92!PBX1;;chr17:59477233..59477263,+!p1@TBX2!0.57!9.92!TBX2;;chr17:46655704..46655718,-!p2@HOXB4!0.57!4.41!HOXB4;;chr15:67458861..67458879,+!p17@SMAD3!0.57!2.76!SMAD3;;chr16:31076332..31076388,-!p3@ZNF668!0.57!2.76!ZNF668;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.76!NR3C1;;chr6:10415484..10415508,-!p3@TFAP2A!0.57!2.76!TFAP2A;;chr7:27183114..27183138,-!p3@HOXA5!0.57!2.76!HOXA5;;chr8:106330543..106330554,+!p4@ZFPM2!0.57!2.76!ZFPM2;;chr8:2590287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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002595;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003513;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
Line 39: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg38.nobarcode.ctss.bed.gz
|id=FF:11289-117A2
|id=FF:11289-117A2
|is_a=EFO:0002091;;FF:0000175
|is_a=EFO:0002091;;FF:0000175
|is_obsolete=
|is_obsolete=
|library_ids=CNhs11090
|library_id=CNhs11090
|library_id_phase_based=2:CNhs11090
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11289
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GTCCGC.11289
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11289
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GTCCGC.11289
|name=Smooth Muscle Cells - Subclavian Artery, donor1
|name=Smooth Muscle Cells - Subclavian Artery, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 48: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11090,LSID724,release008,COMPLETED
|profile_hcage=CNhs11090,LSID724,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
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|profile_srnaseq=SRhi10004,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 87: Line 106:
|top_motifs=HIF1A:1.88352492585;GZF1:1.63750191134;FOX{I1,J2}:1.62282103579;GTF2A1,2:1.58431770983;PBX1:1.34378735214;GLI1..3:1.25376873606;NKX3-1:1.15186440892;XCPE1{core}:1.09992013701;ZNF238:1.07273769672;IKZF1:1.02742595874;NFE2L1:0.990620592241;PPARG:0.978784295557;ZNF423:0.930757182078;POU2F1..3:0.892618740704;HOX{A5,B5}:0.84927131626;TFAP4:0.82319091584;TLX1..3_NFIC{dimer}:0.820525088395;EBF1:0.813222328921;TBP:0.78294130712;POU6F1:0.778953552521;TAL1_TCF{3,4,12}:0.761353542078;HMX1:0.751607358433;ESR1:0.746662743918;TP53:0.729624876403;ZIC1..3:0.724652627074;ATF6:0.717008858244;GCM1,2:0.70674415486;AHR_ARNT_ARNT2:0.702288414189;NANOG{mouse}:0.698061068548;HIC1:0.68542507562;SRF:0.673876802747;HES1:0.660461234635;NFIX:0.658825583611;MAFB:0.63378380946;ZBTB6:0.628392099413;PAX1,9:0.59154804365;GTF2I:0.589717443507;CRX:0.557961399174;NFATC1..3:0.557771959506;NFE2L2:0.545025881683;PATZ1:0.543048283209;TFCP2:0.532917574847;RXRA_VDR{dimer}:0.52046590205;TFAP2B:0.516598024;HOX{A6,A7,B6,B7}:0.510153684848;BACH2:0.505803382643;MTE{core}:0.489639318052;TEAD1:0.486617102415;FOS_FOS{B,L1}_JUN{B,D}:0.481083416337;ALX4:0.475085148592;DBP:0.455176369815;ZNF148:0.446914231651;XBP1:0.441798537305;TBX4,5:0.436827157276;FOSL2:0.431453422843;SOX17:0.423971724953;EN1,2:0.412408521726;AR:0.396350065091;NANOG:0.393217377028;TFAP2{A,C}:0.385655177464;SMAD1..7,9:0.381730407784;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.359955348946;REST:0.356028532953;SPZ1:0.330599630563;MYBL2:0.326184120207;ONECUT1,2:0.309895574071;FOXQ1:0.304740280337;bHLH_family:0.293077737087;SOX{8,9,10}:0.292358432132;NR5A1,2:0.284909367275;LEF1_TCF7_TCF7L1,2:0.278571598029;MZF1:0.277855918534;GFI1:0.277758343466;ALX1:0.272892522843;PRRX1,2:0.268286004422;EGR1..3:0.264378072889;POU3F1..4:0.250207466015;HAND1,2:0.249304634986;POU1F1:0.2439651437;NFE2:0.224970147526;HSF1,2:0.219888563748;MTF1:0.208666554142;HLF:0.205483702399;PAX6:0.204691774667;NHLH1,2:0.19820444722;PAX5:0.165878451175;E2F1..5:0.161268235373;SOX2:0.154252331534;MED-1{core}:0.145085142658;TFDP1:0.128819743713;STAT5{A,B}:0.122418209941;VSX1,2:0.122242736948;ELK1,4_GABP{A,B1}:0.0994088842696;MAZ:0.0968749594776;ARID5B:0.093866740056;HOXA9_MEIS1:0.0917510956366;MYFfamily:0.0736594122008;JUN:0.055484562448;KLF4:0.0535465390285;LHX3,4:0.0530250201547;NR6A1:0.0465509812367;YY1:0.0384169195663;HNF1A:0.0376242415705;PAX8:0.0322581517213;GFI1B:0.0227942995407;RREB1:0.00527036784753;SP1:0.00433268394219;NFY{A,B,C}:0.00425211904223;POU5F1:0.00311772663494;ZFP161:0.000357185790636;UFEwm:-0.00143345692033;ZNF143:-0.0219901551569;RFX1:-0.0345034752963;EP300:-0.0568830179088;MYB:-0.103370716447;ZNF384:-0.104758967678;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.105610550374;RXR{A,B,G}:-0.112199024804;HOX{A4,D4}:-0.120349593374;CEBPA,B_DDIT3:-0.136446412785;NR3C1:-0.14750033482;NRF1:-0.148202310787;CREB1:-0.161171707086;ATF2:-0.187816928427;NKX6-1,2:-0.189172262291;EVI1:-0.190020609702;HBP1_HMGB_SSRP1_UBTF:-0.198504885573;NR1H4:-0.203979651351;RUNX1..3:-0.210735012333;FOXL1:-0.221687919524;NFIL3:-0.24570514449;STAT2,4,6:-0.247003732968;PAX3,7:-0.252827135872;GATA4:-0.271407341518;PAX2:-0.279175746008;CDC5L:-0.280969663229;NFKB1_REL_RELA:-0.288177490136;ADNP_IRX_SIX_ZHX:-0.292271476715;LMO2:-0.296769386603;HNF4A_NR2F1,2:-0.299551806113;PRDM1:-0.31088814729;ETS1,2:-0.313605527535;SOX5:-0.338420643786;MEF2{A,B,C,D}:-0.341181544005;HMGA1,2:-0.364218399549;GATA6:-0.368729022941;ATF5_CREB3:-0.378446601929;TOPORS:-0.387047637754;PDX1:-0.405435892893;ELF1,2,4:-0.418358681837;NKX2-3_NKX2-5:-0.443997300584;NKX3-2:-0.453770763314;FOXM1:-0.47524260625;SPIB:-0.491916787337;SPI1:-0.515484960637;DMAP1_NCOR{1,2}_SMARC:-0.521597541972;BREu{core}:-0.52814545792;TLX2:-0.5334480593;FOX{D1,D2}:-0.552500064427;TGIF1:-0.564768988164;NKX2-2,8:-0.62585483668;FOXN1:-0.654182288855;TEF:-0.697405974094;RORA:-0.722388363201;FOX{F1,F2,J1}:-0.723708916418;CUX2:-0.765404531645;SNAI1..3:-0.796516149535;T:-0.809210557681;IRF1,2:-0.810759839084;ESRRA:-0.864986750955;BPTF:-0.865995998587;IRF7:-0.90991309453;ATF4:-0.945866715655;SREBF1,2:-0.954312029268;FOXP3:-0.954427951079;OCT4_SOX2{dimer}:-0.961228042851;ZEB1:-0.993734535604;NKX2-1,4:-1.0043313653;STAT1,3:-1.01578054532;FOXA2:-1.04645223295;FOXO1,3,4:-1.0633400036;AIRE:-1.10133441986;RFX2..5_RFXANK_RFXAP:-1.20329362474;MYOD1:-1.23711814837;ZBTB16:-1.25225956272;PITX1..3:-1.32163801386;IKZF2:-1.48158612156;FOXP1:-1.50712457951;PAX4:-1.5515525447;FOXD3:-1.5558892206;RBPJ:-1.75417978175;CDX1,2,4:-1.81413989232
|top_motifs=HIF1A:1.88352492585;GZF1:1.63750191134;FOX{I1,J2}:1.62282103579;GTF2A1,2:1.58431770983;PBX1:1.34378735214;GLI1..3:1.25376873606;NKX3-1:1.15186440892;XCPE1{core}:1.09992013701;ZNF238:1.07273769672;IKZF1:1.02742595874;NFE2L1:0.990620592241;PPARG:0.978784295557;ZNF423:0.930757182078;POU2F1..3:0.892618740704;HOX{A5,B5}:0.84927131626;TFAP4:0.82319091584;TLX1..3_NFIC{dimer}:0.820525088395;EBF1:0.813222328921;TBP:0.78294130712;POU6F1:0.778953552521;TAL1_TCF{3,4,12}:0.761353542078;HMX1:0.751607358433;ESR1:0.746662743918;TP53:0.729624876403;ZIC1..3:0.724652627074;ATF6:0.717008858244;GCM1,2:0.70674415486;AHR_ARNT_ARNT2:0.702288414189;NANOG{mouse}:0.698061068548;HIC1:0.68542507562;SRF:0.673876802747;HES1:0.660461234635;NFIX:0.658825583611;MAFB:0.63378380946;ZBTB6:0.628392099413;PAX1,9:0.59154804365;GTF2I:0.589717443507;CRX:0.557961399174;NFATC1..3:0.557771959506;NFE2L2:0.545025881683;PATZ1:0.543048283209;TFCP2:0.532917574847;RXRA_VDR{dimer}:0.52046590205;TFAP2B:0.516598024;HOX{A6,A7,B6,B7}:0.510153684848;BACH2:0.505803382643;MTE{core}:0.489639318052;TEAD1:0.486617102415;FOS_FOS{B,L1}_JUN{B,D}:0.481083416337;ALX4:0.475085148592;DBP:0.455176369815;ZNF148:0.446914231651;XBP1:0.441798537305;TBX4,5:0.436827157276;FOSL2:0.431453422843;SOX17:0.423971724953;EN1,2:0.412408521726;AR:0.396350065091;NANOG:0.393217377028;TFAP2{A,C}:0.385655177464;SMAD1..7,9:0.381730407784;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.359955348946;REST:0.356028532953;SPZ1:0.330599630563;MYBL2:0.326184120207;ONECUT1,2:0.309895574071;FOXQ1:0.304740280337;bHLH_family:0.293077737087;SOX{8,9,10}:0.292358432132;NR5A1,2:0.284909367275;LEF1_TCF7_TCF7L1,2:0.278571598029;MZF1:0.277855918534;GFI1:0.277758343466;ALX1:0.272892522843;PRRX1,2:0.268286004422;EGR1..3:0.264378072889;POU3F1..4:0.250207466015;HAND1,2:0.249304634986;POU1F1:0.2439651437;NFE2:0.224970147526;HSF1,2:0.219888563748;MTF1:0.208666554142;HLF:0.205483702399;PAX6:0.204691774667;NHLH1,2:0.19820444722;PAX5:0.165878451175;E2F1..5:0.161268235373;SOX2:0.154252331534;MED-1{core}:0.145085142658;TFDP1:0.128819743713;STAT5{A,B}:0.122418209941;VSX1,2:0.122242736948;ELK1,4_GABP{A,B1}:0.0994088842696;MAZ:0.0968749594776;ARID5B:0.093866740056;HOXA9_MEIS1:0.0917510956366;MYFfamily:0.0736594122008;JUN:0.055484562448;KLF4:0.0535465390285;LHX3,4:0.0530250201547;NR6A1:0.0465509812367;YY1:0.0384169195663;HNF1A:0.0376242415705;PAX8:0.0322581517213;GFI1B:0.0227942995407;RREB1:0.00527036784753;SP1:0.00433268394219;NFY{A,B,C}:0.00425211904223;POU5F1:0.00311772663494;ZFP161:0.000357185790636;UFEwm:-0.00143345692033;ZNF143:-0.0219901551569;RFX1:-0.0345034752963;EP300:-0.0568830179088;MYB:-0.103370716447;ZNF384:-0.104758967678;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.105610550374;RXR{A,B,G}:-0.112199024804;HOX{A4,D4}:-0.120349593374;CEBPA,B_DDIT3:-0.136446412785;NR3C1:-0.14750033482;NRF1:-0.148202310787;CREB1:-0.161171707086;ATF2:-0.187816928427;NKX6-1,2:-0.189172262291;EVI1:-0.190020609702;HBP1_HMGB_SSRP1_UBTF:-0.198504885573;NR1H4:-0.203979651351;RUNX1..3:-0.210735012333;FOXL1:-0.221687919524;NFIL3:-0.24570514449;STAT2,4,6:-0.247003732968;PAX3,7:-0.252827135872;GATA4:-0.271407341518;PAX2:-0.279175746008;CDC5L:-0.280969663229;NFKB1_REL_RELA:-0.288177490136;ADNP_IRX_SIX_ZHX:-0.292271476715;LMO2:-0.296769386603;HNF4A_NR2F1,2:-0.299551806113;PRDM1:-0.31088814729;ETS1,2:-0.313605527535;SOX5:-0.338420643786;MEF2{A,B,C,D}:-0.341181544005;HMGA1,2:-0.364218399549;GATA6:-0.368729022941;ATF5_CREB3:-0.378446601929;TOPORS:-0.387047637754;PDX1:-0.405435892893;ELF1,2,4:-0.418358681837;NKX2-3_NKX2-5:-0.443997300584;NKX3-2:-0.453770763314;FOXM1:-0.47524260625;SPIB:-0.491916787337;SPI1:-0.515484960637;DMAP1_NCOR{1,2}_SMARC:-0.521597541972;BREu{core}:-0.52814545792;TLX2:-0.5334480593;FOX{D1,D2}:-0.552500064427;TGIF1:-0.564768988164;NKX2-2,8:-0.62585483668;FOXN1:-0.654182288855;TEF:-0.697405974094;RORA:-0.722388363201;FOX{F1,F2,J1}:-0.723708916418;CUX2:-0.765404531645;SNAI1..3:-0.796516149535;T:-0.809210557681;IRF1,2:-0.810759839084;ESRRA:-0.864986750955;BPTF:-0.865995998587;IRF7:-0.90991309453;ATF4:-0.945866715655;SREBF1,2:-0.954312029268;FOXP3:-0.954427951079;OCT4_SOX2{dimer}:-0.961228042851;ZEB1:-0.993734535604;NKX2-1,4:-1.0043313653;STAT1,3:-1.01578054532;FOXA2:-1.04645223295;FOXO1,3,4:-1.0633400036;AIRE:-1.10133441986;RFX2..5_RFXANK_RFXAP:-1.20329362474;MYOD1:-1.23711814837;ZBTB16:-1.25225956272;PITX1..3:-1.32163801386;IKZF2:-1.48158612156;FOXP1:-1.50712457951;PAX4:-1.5515525447;FOXD3:-1.5558892206;RBPJ:-1.75417978175;CDX1,2,4:-1.81413989232
|xref=
|xref=
}} {{DRAAccessionNumbers
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11289-117A2;search_select_hide=table117:FF:11289-117A2
|DRA_sample_Accession=CAGE@DRS008393
|accession_numbers=DRX008501;DRR009373;DRZ000798;DRZ002183;CAGE
|library_id=CNhs11090
}}
}}

Latest revision as of 16:31, 3 June 2020

Name:Smooth Muscle Cells - Subclavian Artery, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11090
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuesubclavian artery
dev stage27 years old adult
sexfemale
age27
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2105
catalog numberCA3010-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005800
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11090 CAGE DRX008501 DRR009373
Accession ID Hg19

Library idBAMCTSS
CNhs11090 DRZ000798 DRZ002183
Accession ID Hg38

Library idBAMCTSS
CNhs11090 DRZ012148 DRZ013533
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005800
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.GTCCGC sRNA-Seq DRX037048 DRR041414
Accession ID Hg19

Library idBAMCTSS
SRhi10004.GTCCGC DRZ007056


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.17
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0414
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0969
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.266
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.297
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.191
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.323
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.994
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.957
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.191
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.725
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.216
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.323
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.323
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.781
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.506
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.424
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.191
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11090

Jaspar motifP-value
MA0002.20.605
MA0003.10.45
MA0004.10.435
MA0006.10.671
MA0007.10.187
MA0009.10.339
MA0014.10.433
MA0017.10.129
MA0018.20.12
MA0019.10.177
MA0024.10.468
MA0025.10.535
MA0027.10.611
MA0028.10.191
MA0029.10.641
MA0030.10.439
MA0031.10.538
MA0035.20.779
MA0038.10.367
MA0039.20.608
MA0040.10.579
MA0041.10.44
MA0042.10.626
MA0043.10.0706
MA0046.10.198
MA0047.20.387
MA0048.10.248
MA0050.11.29006e-5
MA0051.10.0028
MA0052.10.776
MA0055.10.305
MA0057.10.575
MA0058.10.388
MA0059.10.742
MA0060.10.209
MA0061.10.139
MA0062.20.0192
MA0065.20.0483
MA0066.10.966
MA0067.10.201
MA0068.10.731
MA0069.10.952
MA0070.10.163
MA0071.10.706
MA0072.10.515
MA0073.10.707
MA0074.10.332
MA0076.10.419
MA0077.10.219
MA0078.10.439
MA0079.20.169
MA0080.22.54584e-5
MA0081.10.22
MA0083.11.67388e-4
MA0084.10.218
MA0087.10.38
MA0088.10.969
MA0090.10.0284
MA0091.10.597
MA0092.10.555
MA0093.10.592
MA0099.25.5049e-10
MA0100.10.209
MA0101.10.0926
MA0102.20.794
MA0103.10.00105
MA0104.20.0807
MA0105.10.11
MA0106.10.805
MA0107.10.167
MA0108.24.36734e-8
MA0111.10.0379
MA0112.20.739
MA0113.10.444
MA0114.10.0405
MA0115.10.107
MA0116.10.282
MA0117.10.581
MA0119.10.672
MA0122.10.917
MA0124.10.835
MA0125.10.331
MA0131.10.607
MA0135.10.609
MA0136.10.00276
MA0137.20.541
MA0138.20.263
MA0139.10.516
MA0140.10.605
MA0141.10.623
MA0142.10.574
MA0143.10.235
MA0144.10.492
MA0145.10.474
MA0146.10.14
MA0147.10.375
MA0148.10.57
MA0149.10.583
MA0150.10.224
MA0152.10.678
MA0153.10.207
MA0154.10.47
MA0155.10.0558
MA0156.10.03
MA0157.10.26
MA0159.10.547
MA0160.10.67
MA0162.10.239
MA0163.10.367
MA0164.10.351
MA0258.10.947
MA0259.10.562



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11090

Novel motifP-value
10.158
100.0834
1000.335
1010.0533
1020.767
1030.86
1040.263
1050.973
1060.961
1070.652
1080.866
1090.8
110.874
1100.924
1110.028
1120.399
1130.0569
1140.976
1150.485
1160.115
1170.334
1180.368
1190.433
120.727
1200.968
1210.357
1220.925
1230.00132
1240.682
1250.608
1260.433
1270.621
1280.674
1290.832
130.0786
1300.0236
1310.36
1320.913
1330.344
1340.696
1350.844
1360.817
1370.483
1380.321
1390.827
140.312
1400.0863
1410.00673
1420.974
1430.126
1440.964
1450.367
1460.113
1470.23
1480.116
1490.635
150.279
1500.442
1510.835
1520.0204
1530.489
1540.481
1550.59
1560.75
1570.88
1580.023
1590.346
160.533
1600.821
1610.954
1620.352
1630.839
1640.638
1650.312
1660.813
1670.305
1680.399
1690.2
170.63
180.515
190.605
20.436
200.249
210.532
220.369
230.424
240.542
250.179
260.246
270.788
280.0595
290.257
30.544
300.217
310.919
326.66898e-6
330.817
340.358
350.454
360.0563
370.977
380.708
390.225
40.903
400.983
410.418
420.926
430.649
440.337
450.618
460.618
470.519
480.85
490.0622
50.657
500.592
510.7
520.525
530.0577
540.614
550.686
560.699
570.641
580.193
590.596
60.883
600.17
610.289
620.237
630.963
640.717
650.717
660.39
670.808
680.00748
690.321
70.269
700.422
710.85
720.658
730.0207
740.843
750.709
760.236
770.379
780.202
790.309
80.803
800.734
810.546
820.301
830.586
840.463
850.984
860.63
870.0831
880.111
890.544
90.378
900.213
910.888
920.175
930.661
940.523
950.492
960.596
970.365
980.612
990.0122



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11090


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002595 (smooth muscle cell of the subclavian artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0003834 (thoracic segment blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001533 (subclavian artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000175 (human smooth muscle cell of subclavian artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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