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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005394
|DRA_sample_Accession=CAGE@SAMD00005394
|accession_numbers=CAGE;DRX008127;DRR008999;DRZ000424;DRZ001809
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005394
|accession_numbers=CAGE;DRX008127;DRR008999;DRZ000424;DRZ001809;DRZ011774;DRZ013159
|accession_numbers_RNASeq=sRNA-Seq;DRX037117;DRR041483;DRZ007125
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0002393,CL:0002397
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0002393,CL:0002397
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor2.CNhs11954.11305-117B9.hg38.nobarcode.ctss.bed.gz
|id=FF:11305-117B9
|id=FF:11305-117B9
|is_a=EFO:0002091;;FF:0000024
|is_a=EFO:0002091;;FF:0000024
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|library_id=CNhs11954
|library_id=CNhs11954
|library_id_phase_based=2:CNhs11954
|library_id_phase_based=2:CNhs11954
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11305
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.CTTGTA.11305
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11305
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.CTTGTA.11305
|name=CD14+ Monocytes, donor2
|name=CD14+ Monocytes, donor2
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10008,,,
|profile_srnaseq=SRhi10008,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 68: Line 82:
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|rna_weight_ug=10
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|sample_age=57
|sample_age=57
|sample_category=primary cells
|sample_category=primary cells
Line 91: Line 106:
|top_motifs=NFKB1_REL_RELA:5.08230965593;PAX2:4.41836472384;BACH2:4.32448999431;FOS_FOS{B,L1}_JUN{B,D}:4.21059998901;NFE2:4.1175926303;FOSL2:4.02496492467;PAX3,7:3.96371083425;RUNX1..3:3.54740982429;NFIL3:3.52722077513;SPIB:3.4791065025;SPI1:3.4743005652;CREB1:3.46074257127;CEBPA,B_DDIT3:3.24569162443;ATF5_CREB3:3.19848594365;ETS1,2:3.18027418374;ATF4:3.10469233613;HLF:2.96317441423;RXRA_VDR{dimer}:2.94756982991;TGIF1:2.66078904453;HMGA1,2:2.56870515411;NANOG{mouse}:2.42008304276;NFATC1..3:2.39288527589;DMAP1_NCOR{1,2}_SMARC:2.36722411987;NFE2L2:2.34449376982;IRF1,2:2.33345403137;FOXN1:2.29228965811;MAFB:2.20530963641;BPTF:2.1988312344;NFE2L1:2.1693149549;FOXP3:2.06441199174;JUN:2.01545368279;FOXO1,3,4:1.97186414197;PITX1..3:1.94381516015;PAX8:1.92707973226;STAT2,4,6:1.88402584618;RFX2..5_RFXANK_RFXAP:1.84386237415;EP300:1.53749603885;ELF1,2,4:1.47703659239;IRF7:1.47691790397;SREBF1,2:1.47200526651;HIF1A:1.41758841898;FOX{D1,D2}:1.32886475019;FOXP1:1.30893613073;HMX1:1.30468838881;ATF2:1.15325570418;RORA:0.974713797258;RBPJ:0.902864513382;ATF6:0.835717020959;PDX1:0.648489413143;T:0.552910050878;HOX{A5,B5}:0.478892387888;HBP1_HMGB_SSRP1_UBTF:0.40331126534;HSF1,2:0.38547436618;NKX2-1,4:0.368431361393;SMAD1..7,9:0.357956955679;EGR1..3:0.35341250674;GATA4:0.333865043048;PPARG:0.270494508224;ZBTB16:0.202659964923;GLI1..3:0.0982624095947;RXR{A,B,G}:0.0823156280762;FOXL1:0.0755093948109;XBP1:-0.000291299714892;ALX4:-0.00130590285284;BREu{core}:-0.0443068387715;TFCP2:-0.0593068828367;IKZF2:-0.111772896466;MEF2{A,B,C,D}:-0.189045453915;FOX{F1,F2,J1}:-0.190513732229;SOX2:-0.197018847529;HOXA9_MEIS1:-0.213075481998;IKZF1:-0.219100282744;NANOG:-0.224545824715;ESR1:-0.271500522766;TFAP2{A,C}:-0.31106134335;POU2F1..3:-0.31890956582;MYB:-0.374937297488;TFDP1:-0.39418224385;TBX4,5:-0.410709178096;TLX2:-0.418007238004;FOXD3:-0.491098318429;ZNF384:-0.503747260213;MTE{core}:-0.520366442969;SRF:-0.523326430461;NKX6-1,2:-0.536443316948;NR1H4:-0.538546176373;RREB1:-0.540729414507;POU5F1:-0.581891072662;AHR_ARNT_ARNT2:-0.590577851567;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.641900011528;MYFfamily:-0.657501712245;ESRRA:-0.678341720931;TFAP2B:-0.685013603042;NKX3-1:-0.687225602219;ZFP161:-0.68955121157;TOPORS:-0.749493043806;EN1,2:-0.763415796958;FOXM1:-0.785715086156;MED-1{core}:-0.788913133253;MZF1:-0.820792327228;RFX1:-0.857847094305;ZNF238:-0.921976143801;TFAP4:-0.930342104912;CDX1,2,4:-0.960131413639;PRDM1:-0.982997092915;PATZ1:-0.998380007124;HNF4A_NR2F1,2:-1.0007047165;HES1:-1.01056376144;SP1:-1.01969919133;OCT4_SOX2{dimer}:-1.02719679905;GCM1,2:-1.05877315501;NHLH1,2:-1.07870733112;STAT1,3:-1.14501575957;VSX1,2:-1.17814918019;TEF:-1.17985289639;REST:-1.20902180052;NR6A1:-1.21986741576;STAT5{A,B}:-1.22142247284;E2F1..5:-1.26922134838;MTF1:-1.27818612441;GATA6:-1.29220912468;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.36111563106;HIC1:-1.38759642307;HNF1A:-1.4275302304;DBP:-1.45524875683;TAL1_TCF{3,4,12}:-1.46503108619;NR5A1,2:-1.4811854755;TBP:-1.48618832639;PAX6:-1.49777804591;FOXA2:-1.50934686066;CUX2:-1.51618558936;XCPE1{core}:-1.57071866192;PAX4:-1.59613947381;ZEB1:-1.59786219366;GZF1:-1.60385772831;MAZ:-1.61799977164;EBF1:-1.62985591695;MYOD1:-1.65781457092;TP53:-1.67558513848;SOX{8,9,10}:-1.69632706858;PRRX1,2:-1.71042244183;PAX5:-1.72880363428;SOX5:-1.77075400433;CRX:-1.83135664094;NR3C1:-1.86363844077;TEAD1:-1.88904837761;GTF2I:-1.9004463929;SPZ1:-1.91703769619;PAX1,9:-1.92006667353;NFY{A,B,C}:-1.94677196172;ZNF423:-1.96703939709;NKX2-3_NKX2-5:-1.97908565521;GTF2A1,2:-1.98827515594;ZNF148:-2.0144936474;SNAI1..3:-2.03016909559;ADNP_IRX_SIX_ZHX:-2.08731527243;NKX2-2,8:-2.09114181371;FOX{I1,J2}:-2.12634714699;LEF1_TCF7_TCF7L1,2:-2.12675761733;TLX1..3_NFIC{dimer}:-2.1269354876;NFIX:-2.14718596311;ZBTB6:-2.15872224595;AIRE:-2.16325862978;ZIC1..3:-2.16408956335;POU3F1..4:-2.20988204258;bHLH_family:-2.24783700091;POU6F1:-2.26454873063;ELK1,4_GABP{A,B1}:-2.28251089885;HOX{A4,D4}:-2.32280396702;HOX{A6,A7,B6,B7}:-2.37257364268;ALX1:-2.3980663675;MYBL2:-2.45362089229;NRF1:-2.48180476126;PBX1:-2.49357880482;CDC5L:-2.4948067781;LMO2:-2.59217185798;UFEwm:-2.66037360557;FOXQ1:-2.69331047462;ONECUT1,2:-2.71178550209;SOX17:-2.71493584647;KLF4:-2.76535775928;ARID5B:-2.83094260926;GFI1:-2.90158672203;GFI1B:-3.01520443551;LHX3,4:-3.04930490924;AR:-3.11532178074;EVI1:-3.15947788815;NKX3-2:-3.16922513239;ZNF143:-3.37854469335;YY1:-3.4660338723;HAND1,2:-3.80661182104;POU1F1:-3.90774299165
|top_motifs=NFKB1_REL_RELA:5.08230965593;PAX2:4.41836472384;BACH2:4.32448999431;FOS_FOS{B,L1}_JUN{B,D}:4.21059998901;NFE2:4.1175926303;FOSL2:4.02496492467;PAX3,7:3.96371083425;RUNX1..3:3.54740982429;NFIL3:3.52722077513;SPIB:3.4791065025;SPI1:3.4743005652;CREB1:3.46074257127;CEBPA,B_DDIT3:3.24569162443;ATF5_CREB3:3.19848594365;ETS1,2:3.18027418374;ATF4:3.10469233613;HLF:2.96317441423;RXRA_VDR{dimer}:2.94756982991;TGIF1:2.66078904453;HMGA1,2:2.56870515411;NANOG{mouse}:2.42008304276;NFATC1..3:2.39288527589;DMAP1_NCOR{1,2}_SMARC:2.36722411987;NFE2L2:2.34449376982;IRF1,2:2.33345403137;FOXN1:2.29228965811;MAFB:2.20530963641;BPTF:2.1988312344;NFE2L1:2.1693149549;FOXP3:2.06441199174;JUN:2.01545368279;FOXO1,3,4:1.97186414197;PITX1..3:1.94381516015;PAX8:1.92707973226;STAT2,4,6:1.88402584618;RFX2..5_RFXANK_RFXAP:1.84386237415;EP300:1.53749603885;ELF1,2,4:1.47703659239;IRF7:1.47691790397;SREBF1,2:1.47200526651;HIF1A:1.41758841898;FOX{D1,D2}:1.32886475019;FOXP1:1.30893613073;HMX1:1.30468838881;ATF2:1.15325570418;RORA:0.974713797258;RBPJ:0.902864513382;ATF6:0.835717020959;PDX1:0.648489413143;T:0.552910050878;HOX{A5,B5}:0.478892387888;HBP1_HMGB_SSRP1_UBTF:0.40331126534;HSF1,2:0.38547436618;NKX2-1,4:0.368431361393;SMAD1..7,9:0.357956955679;EGR1..3:0.35341250674;GATA4:0.333865043048;PPARG:0.270494508224;ZBTB16:0.202659964923;GLI1..3:0.0982624095947;RXR{A,B,G}:0.0823156280762;FOXL1:0.0755093948109;XBP1:-0.000291299714892;ALX4:-0.00130590285284;BREu{core}:-0.0443068387715;TFCP2:-0.0593068828367;IKZF2:-0.111772896466;MEF2{A,B,C,D}:-0.189045453915;FOX{F1,F2,J1}:-0.190513732229;SOX2:-0.197018847529;HOXA9_MEIS1:-0.213075481998;IKZF1:-0.219100282744;NANOG:-0.224545824715;ESR1:-0.271500522766;TFAP2{A,C}:-0.31106134335;POU2F1..3:-0.31890956582;MYB:-0.374937297488;TFDP1:-0.39418224385;TBX4,5:-0.410709178096;TLX2:-0.418007238004;FOXD3:-0.491098318429;ZNF384:-0.503747260213;MTE{core}:-0.520366442969;SRF:-0.523326430461;NKX6-1,2:-0.536443316948;NR1H4:-0.538546176373;RREB1:-0.540729414507;POU5F1:-0.581891072662;AHR_ARNT_ARNT2:-0.590577851567;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.641900011528;MYFfamily:-0.657501712245;ESRRA:-0.678341720931;TFAP2B:-0.685013603042;NKX3-1:-0.687225602219;ZFP161:-0.68955121157;TOPORS:-0.749493043806;EN1,2:-0.763415796958;FOXM1:-0.785715086156;MED-1{core}:-0.788913133253;MZF1:-0.820792327228;RFX1:-0.857847094305;ZNF238:-0.921976143801;TFAP4:-0.930342104912;CDX1,2,4:-0.960131413639;PRDM1:-0.982997092915;PATZ1:-0.998380007124;HNF4A_NR2F1,2:-1.0007047165;HES1:-1.01056376144;SP1:-1.01969919133;OCT4_SOX2{dimer}:-1.02719679905;GCM1,2:-1.05877315501;NHLH1,2:-1.07870733112;STAT1,3:-1.14501575957;VSX1,2:-1.17814918019;TEF:-1.17985289639;REST:-1.20902180052;NR6A1:-1.21986741576;STAT5{A,B}:-1.22142247284;E2F1..5:-1.26922134838;MTF1:-1.27818612441;GATA6:-1.29220912468;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.36111563106;HIC1:-1.38759642307;HNF1A:-1.4275302304;DBP:-1.45524875683;TAL1_TCF{3,4,12}:-1.46503108619;NR5A1,2:-1.4811854755;TBP:-1.48618832639;PAX6:-1.49777804591;FOXA2:-1.50934686066;CUX2:-1.51618558936;XCPE1{core}:-1.57071866192;PAX4:-1.59613947381;ZEB1:-1.59786219366;GZF1:-1.60385772831;MAZ:-1.61799977164;EBF1:-1.62985591695;MYOD1:-1.65781457092;TP53:-1.67558513848;SOX{8,9,10}:-1.69632706858;PRRX1,2:-1.71042244183;PAX5:-1.72880363428;SOX5:-1.77075400433;CRX:-1.83135664094;NR3C1:-1.86363844077;TEAD1:-1.88904837761;GTF2I:-1.9004463929;SPZ1:-1.91703769619;PAX1,9:-1.92006667353;NFY{A,B,C}:-1.94677196172;ZNF423:-1.96703939709;NKX2-3_NKX2-5:-1.97908565521;GTF2A1,2:-1.98827515594;ZNF148:-2.0144936474;SNAI1..3:-2.03016909559;ADNP_IRX_SIX_ZHX:-2.08731527243;NKX2-2,8:-2.09114181371;FOX{I1,J2}:-2.12634714699;LEF1_TCF7_TCF7L1,2:-2.12675761733;TLX1..3_NFIC{dimer}:-2.1269354876;NFIX:-2.14718596311;ZBTB6:-2.15872224595;AIRE:-2.16325862978;ZIC1..3:-2.16408956335;POU3F1..4:-2.20988204258;bHLH_family:-2.24783700091;POU6F1:-2.26454873063;ELK1,4_GABP{A,B1}:-2.28251089885;HOX{A4,D4}:-2.32280396702;HOX{A6,A7,B6,B7}:-2.37257364268;ALX1:-2.3980663675;MYBL2:-2.45362089229;NRF1:-2.48180476126;PBX1:-2.49357880482;CDC5L:-2.4948067781;LMO2:-2.59217185798;UFEwm:-2.66037360557;FOXQ1:-2.69331047462;ONECUT1,2:-2.71178550209;SOX17:-2.71493584647;KLF4:-2.76535775928;ARID5B:-2.83094260926;GFI1:-2.90158672203;GFI1B:-3.01520443551;LHX3,4:-3.04930490924;AR:-3.11532178074;EVI1:-3.15947788815;NKX3-2:-3.16922513239;ZNF143:-3.37854469335;YY1:-3.4660338723;HAND1,2:-3.80661182104;POU1F1:-3.90774299165
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11305-117B9;search_select_hide=table117:FF:11305-117B9
}}
}}

Latest revision as of 16:31, 3 June 2020

Name:CD14+ Monocytes, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11954
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage57 years old adult
sexmale
age57
cell typemonocyte
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberMon726
catalog number3H100-30-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005394
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11954 CAGE DRX008127 DRR008999
Accession ID Hg19

Library idBAMCTSS
CNhs11954 DRZ000424 DRZ001809
Accession ID Hg38

Library idBAMCTSS
CNhs11954 DRZ011774 DRZ013159
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005394
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.CTTGTA sRNA-Seq DRX037117 DRR041483
Accession ID Hg19

Library idBAMCTSS
SRhi10008.CTTGTA DRZ007125


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.506
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.0794
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.42
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.393
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.557
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.545
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.343
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.416
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.441
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.602
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.792
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.448
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.652
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.563
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.0794
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.205
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.195
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.448
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.955
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.557
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0975
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.946
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.381
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.149
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0794
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.205
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.416
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.0794
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.544
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.146
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.929
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.863
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.802
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.807
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.381
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.146
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast1.001
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.749
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.589
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.764
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.764
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.735
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.205
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.395
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.581
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.0766
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.463
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.644
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature1.018
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.279
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.0794
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0262
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.614
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.343
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.532
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.227
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.256
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11954

Jaspar motifP-value
MA0002.22.39706e-9
MA0003.10.679
MA0004.10.686
MA0006.10.755
MA0007.10.666
MA0009.10.085
MA0014.10.696
MA0017.10.512
MA0018.20.00772
MA0019.10.302
MA0024.10.00562
MA0025.13.54925e-4
MA0027.10.729
MA0028.10.0269
MA0029.10.219
MA0030.10.676
MA0031.10.661
MA0035.20.203
MA0038.10.218
MA0039.20.42
MA0040.10.607
MA0041.10.416
MA0042.10.595
MA0043.11.56641e-10
MA0046.10.00516
MA0047.20.72
MA0048.10.551
MA0050.12.58033e-7
MA0051.10.00211
MA0052.10.00682
MA0055.10.766
MA0057.10.208
MA0058.10.573
MA0059.10.673
MA0060.11.3738e-9
MA0061.11.41317e-30
MA0062.20.274
MA0065.20.111
MA0066.10.0821
MA0067.14.58986e-6
MA0068.10.362
MA0069.10.975
MA0070.10.0314
MA0071.10.34
MA0072.10.583
MA0073.10.39
MA0074.10.106
MA0076.10.0714
MA0077.10.209
MA0078.10.746
MA0079.20.394
MA0080.23.06951e-13
MA0081.12.47565e-4
MA0083.10.401
MA0084.10.951
MA0087.10.815
MA0088.10.18
MA0090.10.149
MA0091.10.602
MA0092.10.484
MA0093.10.843
MA0099.25.20307e-45
MA0100.10.553
MA0101.13.96281e-31
MA0102.22.44463e-11
MA0103.10.0431
MA0104.20.589
MA0105.11.95546e-27
MA0106.10.401
MA0107.11.05229e-36
MA0108.20.0166
MA0111.10.57
MA0112.20.00873
MA0113.10.595
MA0114.10.81
MA0115.10.259
MA0116.10.00369
MA0117.10.0155
MA0119.10.559
MA0122.10.729
MA0124.10.756
MA0125.10.0695
MA0131.10.557
MA0135.10.604
MA0136.12.99617e-14
MA0137.20.874
MA0138.20.0202
MA0139.10.312
MA0140.10.076
MA0141.10.281
MA0142.10.669
MA0143.10.568
MA0144.10.328
MA0145.10.855
MA0146.10.225
MA0147.10.738
MA0148.10.941
MA0149.10.553
MA0150.14.22643e-18
MA0152.10.216
MA0153.10.00122
MA0154.13.8029e-4
MA0155.10.945
MA0156.12.05425e-9
MA0157.10.457
MA0159.10.121
MA0160.10.0956
MA0162.10.785
MA0163.12.47297e-5
MA0164.10.477
MA0258.10.0496
MA0259.10.643



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11954

Novel motifP-value
10.339
100.0132
1000.694
1010.992
1020.952
1030.677
1040.489
1050.111
1065.49669e-4
1070.32
1080.621
1090.435
110.417
1100.425
1110.0661
1120.579
1130.161
1140.125
1150.172
1160.691
1170.0623
1180.167
1190.472
120.234
1200.292
1210.633
1220.698
1230.00612
1240.751
1250.341
1260.204
1270.775
1280.0775
1290.955
130.166
1300.181
1310.966
1320.0527
1330.498
1340.808
1350.613
1360.932
1370.0117
1380.278
1390.0625
140.33
1400.255
1410.398
1420.248
1430.0319
1440.624
1450.609
1460.738
1470.47
1480.0464
1490.796
150.185
1500.581
1510.192
1520.243
1530.744
1540.413
1550.467
1560.574
1570.467
1580.0173
1590.486
160.787
1600.738
1610.549
1620.0987
1630.189
1640.0586
1650.29
1660.594
1670.225
1680.135
1690.0527
170.346
180.233
190.827
20.35
200.259
210.869
220.424
230.0509
240.758
250.357
260.176
270.521
280.41
290.269
30.259
300.228
310.877
320.12
330.335
340.705
350.134
360.0999
370.162
380.484
390.8
40.864
400.24
410.0057
420.456
430.0282
440.448
450.99
460.352
470.899
480.821
490.0899
50.251
500.9
510.475
520.402
530.201
540.534
550.933
560.918
570.832
580.204
590.514
60.936
600.0629
610.444
620.13
630.717
640.607
650.305
660.0459
670.629
680.214
690.205
70.262
700.0728
710.0543
720.252
730.209
740.0439
750.211
760.0681
770.998
780.256
790.619
80.955
800.122
810.406
820.255
830.284
840.0385
850.0558
860.0441
870.864
880.871
890.917
90.409
900.264
910.303
920.362
930.727
940.0853
950.262
960.461
970.757
980.135
990.00562



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11954


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0002393 (intermediate monocyte)
0002397 (CD14-positive, CD16-positive monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000024 (human CD14-positive monocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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