FF:11357-117H7: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005360 | |DRA_sample_Accession=CAGE@SAMD00005360 | ||
|accession_numbers=CAGE;DRX008417;DRR009289;DRZ000714;DRZ002099 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005360 | ||
|accession_numbers=CAGE;DRX008417;DRR009289;DRZ000714;DRZ002099;DRZ012064;DRZ013449 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037161;DRR041527;DRZ007169 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002582 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002582 | ||
Line 65: | Line 67: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10010,,, | |profile_srnaseq=SRhi10010,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |refex=http://refex.dbcls.jp/genelist.php?lang | ||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.327811966732366,0,-0.27483329820609,0.205267350102595,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.0836726148807695,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.078792639394719,0.181630511148827,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.181630511148827,0,0,0,-0.0969923612426051,0,0,0.0842868839357301,0,0,0,0,0,0,0,0,0.181630511148827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00535791356461235,0.0908152555744135,0,0,-0.0584468268118252,-0.0295668915470415,0,0.309312603024698,0,0,-0.0980353512377064,0.217596499176857,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.143770881543955,-0.160024770730062,0,0,0,0,0,0 | |repeat_enrich_byfamily=0,0,0,0,0,0,0,0.327811966732366,0,-0.27483329820609,0.205267350102595,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.0836726148807695,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.078792639394719,0.181630511148827,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.181630511148827,0,0,0,-0.0969923612426051,0,0,0.0842868839357301,0,0,0,0,0,0,0,0,0.181630511148827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00535791356461235,0.0908152555744135,0,0,-0.0584468268118252,-0.0295668915470415,0,0.309312603024698,0,0,-0.0980353512377064,0.217596499176857,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.143770881543955,-0.160024770730062,0,0,0,0,0,0 | ||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0.181630511148827,0,0.309312603024698,0,0,-0.0655483641367374,0,0.0140437780667438,-0.143515142523472,0,0,-0.0285577869878453,0,0,0,0,0.181630511148827,0,0,0,0,0.840739814172972,0,-0.0504125515893149,0,0,0,0,0.0920768337044083,-0.305472230898407,0,0.20265942551514,0.113286250071459,0,0,0,0,0.297835094194639,0,0.0607510273550864,0.0989103428254097,-0.183909622860876,0.115541560293067,-0.0328845133000357,0,0,0,0.0690744462234735,0.459873622941538,0,0,-0.0309645961774605,-0.0905343629862455,0,0,0.986392719308227,0,0.154964330450733,0.188489178179267,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187978090265326,-0.326988596678969,0,0,0,0,-0.092645426704976,0,0,0.338861243998938,0.286220572816141,-0.080670707836362,-0.0348762423495371,0,-0.302389727009913,-0.055421190228046,-0.250309849934003,-0.165925908781195,0.340728147447614,0.21787862994879,0,0.052041382874835,0.0405662949192178,-0.0130843146858757,-0.0997845735948848,0.00864993573213341,0.461356141957311,-0.112236885386271,0,0,0.104121584669524,-0.0529963872819244,0,0,-0.180802111452075,-0.065435106078908,0.0565910148758025,-0.161422204754406,-0.0438298130346894,-0.0534136111972356,0.269780074568027,-0.148123849871896,0,0.725546386343091,0,0,0,-0.0124560618401212,0.158018286833219,-0.0599736238776778,-0.0232489428201008,-0.076117112312343,-0.0683442610773682,0.00117100363816417,-0.110475873807004,-0.0519542768658374,0,0,-0.0906472340526597,0,0,0,0,0.181630511148827,-0.0654446011547571,-0.357861631881339,-0.232855561555545,0,-0.138575307208585,0,-0.142629778840238,0,-0.177915455063751,-0.0205402504619784,-0.0194276790841131,-0.127849549529692,0,0.0052093274921051,0.130177055085116,-0.0182636213507879,-0.24076429424291,-0.0584468268118252,-0.17461938447473,-0.0423514334159506,0.022478646983713,0.46958718228098,-0.0743180509635842,1.94096421958075,0,0.0339377575470883,-0.123645582320523,0,0.153137624453663,0,0.0124775969890465,0,-0.213759642955531,0,-0.053127206633641,-0.0523037546544879,-0.439289374580686,0.274919276793558,0,-0.0177507540588265,-0.0342959644446738,0,0.0310122616527507,0.118136589806827,0,0.158945519690059,-0.388383363487884,-0.211650427864589,0.268870892819443,0,-0.0362451850603563,0,0.181630511148827,0.01380380736353,-0.235476037764389,0,-0.148751225140098,-0.121072917394644,0.285102897101968,0.065659437713893,0.181630511148827,0,-0.336387734968026,0,0,-0.296615460793332,0,-0.00535791356461235,0.154534008011882,0,-0.108622809454255,0,0,0.131784837059523,0,0.265812244269725,0,0,0.432943211947756,0.0650023981586943,0,0,0.407860349498638,0,0,-0.0186605599506005,0,0,0,0,0,-0.307691111939426,-0.0455207271917495,0,0.235559291884153,0,0,0,0.666029218334375,0,0.0751256388963599,-0.00318978944917248,0,0.378142905379413,0,0.365112581142332,0.0908152555744135,0,0,0,0.0935892004712238,-0.0216060509458967,0,0.177449896527067,0,0,0,0,-0.0861409897892114,0,0,0,0,0.123900054095163,-0.432268536882536,0,0,0,0.435192998353715,0,0,0.181630511148827,0.00109459183468824,-0.0815702827190986,0,0,0.476831798722582,0,-0.014016769714239,-0.0815818795468414,0,-0.0059973352414023,-0.051374687710879,0.364447182208473,0,0,-0.261347131789888,0,0.181630511148827,0.169757367044896,0,0,0,0,0,0,0,0,0,-0.0326840012509286,0,0,0,0,0,0,0,0,0,0,0,0.0167888270516103,-0.0922240566585104,0.181630511148827,0,0,0,0,0,0,0.270639407244829,0.0764366213271254,0,0,0,0,0,0.181630511148827,0,0,0.282409033666058,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.101222097180491,0,0,0.0319504708311845,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.298591925151842,0,0,0,0,0,0,0,-0.27483329820609,0,0.309312603024698,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.327811966732366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203930174749319,0,0,0,0.21783787572144,0,-0.0182765483584277,0,0,0,0.180791109383573,0,0,0,0,0,0,0.0594748315458865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.055957211769325,0,0,0,0,0.181630511148827,0,0,0.0836726148807695,0,0,-0.0920328098005262,0,0,0,0,0,0,0.110051120114715,0.248353388353852,-0.0648447705794983,0,0,0,0.189679425926921,0.181630511148827,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0.154656301512349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181630511148827,0.0908152555744135,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.0962263733676548,0,0,0,0,0,0,0.181630511148827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181630511148827,0,0,0,0.0827011298683576,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261090527785644,0,0.0972538789188,0,0,0,0,0,0,0,0,0,0,0,0.181630511148827,0,0,0,0,0.33881489578155,0,0,0,0,0.26167549236378,0,0,0,0,0,0,0.992435331952337,-0.087428497801853,0,0,0.181630511148827,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.163372177210605,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.94307629217786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.168294260991719,-0.160024770730062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0217094669402108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.061118333201738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309312603024698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0456327995847711,0,0,0,0,0.181630511148827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0908152555744135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.086828584122869,0,0,0,0,0,0,0,0.0589345141518262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0670754720568515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0590986695260305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0908152555744135,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0842868839357301,0,0.0908152555744135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.27161351661746,0,0,-0.0422874684771159,0,-0.0762353313415692,0,0,0,0,0,0,0.106349337625054,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,0.017317799088455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,0,-0.397074688522015,0,0,-0.258808335283824,0,0,0,0,0,-0.174992895090299,-0.374422890434477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,-0.269475635594569,0.181630511148827,-0.197205743201597,0,0,-0.0781053106522872,0,0,0,-0.0959594073735869 | |repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0.181630511148827,0,0.309312603024698,0,0,-0.0655483641367374,0,0.0140437780667438,-0.143515142523472,0,0,-0.0285577869878453,0,0,0,0,0.181630511148827,0,0,0,0,0.840739814172972,0,-0.0504125515893149,0,0,0,0,0.0920768337044083,-0.305472230898407,0,0.20265942551514,0.113286250071459,0,0,0,0,0.297835094194639,0,0.0607510273550864,0.0989103428254097,-0.183909622860876,0.115541560293067,-0.0328845133000357,0,0,0,0.0690744462234735,0.459873622941538,0,0,-0.0309645961774605,-0.0905343629862455,0,0,0.986392719308227,0,0.154964330450733,0.188489178179267,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187978090265326,-0.326988596678969,0,0,0,0,-0.092645426704976,0,0,0.338861243998938,0.286220572816141,-0.080670707836362,-0.0348762423495371,0,-0.302389727009913,-0.055421190228046,-0.250309849934003,-0.165925908781195,0.340728147447614,0.21787862994879,0,0.052041382874835,0.0405662949192178,-0.0130843146858757,-0.0997845735948848,0.00864993573213341,0.461356141957311,-0.112236885386271,0,0,0.104121584669524,-0.0529963872819244,0,0,-0.180802111452075,-0.065435106078908,0.0565910148758025,-0.161422204754406,-0.0438298130346894,-0.0534136111972356,0.269780074568027,-0.148123849871896,0,0.725546386343091,0,0,0,-0.0124560618401212,0.158018286833219,-0.0599736238776778,-0.0232489428201008,-0.076117112312343,-0.0683442610773682,0.00117100363816417,-0.110475873807004,-0.0519542768658374,0,0,-0.0906472340526597,0,0,0,0,0.181630511148827,-0.0654446011547571,-0.357861631881339,-0.232855561555545,0,-0.138575307208585,0,-0.142629778840238,0,-0.177915455063751,-0.0205402504619784,-0.0194276790841131,-0.127849549529692,0,0.0052093274921051,0.130177055085116,-0.0182636213507879,-0.24076429424291,-0.0584468268118252,-0.17461938447473,-0.0423514334159506,0.022478646983713,0.46958718228098,-0.0743180509635842,1.94096421958075,0,0.0339377575470883,-0.123645582320523,0,0.153137624453663,0,0.0124775969890465,0,-0.213759642955531,0,-0.053127206633641,-0.0523037546544879,-0.439289374580686,0.274919276793558,0,-0.0177507540588265,-0.0342959644446738,0,0.0310122616527507,0.118136589806827,0,0.158945519690059,-0.388383363487884,-0.211650427864589,0.268870892819443,0,-0.0362451850603563,0,0.181630511148827,0.01380380736353,-0.235476037764389,0,-0.148751225140098,-0.121072917394644,0.285102897101968,0.065659437713893,0.181630511148827,0,-0.336387734968026,0,0,-0.296615460793332,0,-0.00535791356461235,0.154534008011882,0,-0.108622809454255,0,0,0.131784837059523,0,0.265812244269725,0,0,0.432943211947756,0.0650023981586943,0,0,0.407860349498638,0,0,-0.0186605599506005,0,0,0,0,0,-0.307691111939426,-0.0455207271917495,0,0.235559291884153,0,0,0,0.666029218334375,0,0.0751256388963599,-0.00318978944917248,0,0.378142905379413,0,0.365112581142332,0.0908152555744135,0,0,0,0.0935892004712238,-0.0216060509458967,0,0.177449896527067,0,0,0,0,-0.0861409897892114,0,0,0,0,0.123900054095163,-0.432268536882536,0,0,0,0.435192998353715,0,0,0.181630511148827,0.00109459183468824,-0.0815702827190986,0,0,0.476831798722582,0,-0.014016769714239,-0.0815818795468414,0,-0.0059973352414023,-0.051374687710879,0.364447182208473,0,0,-0.261347131789888,0,0.181630511148827,0.169757367044896,0,0,0,0,0,0,0,0,0,-0.0326840012509286,0,0,0,0,0,0,0,0,0,0,0,0.0167888270516103,-0.0922240566585104,0.181630511148827,0,0,0,0,0,0,0.270639407244829,0.0764366213271254,0,0,0,0,0,0.181630511148827,0,0,0.282409033666058,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.101222097180491,0,0,0.0319504708311845,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.298591925151842,0,0,0,0,0,0,0,-0.27483329820609,0,0.309312603024698,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.327811966732366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203930174749319,0,0,0,0.21783787572144,0,-0.0182765483584277,0,0,0,0.180791109383573,0,0,0,0,0,0,0.0594748315458865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.055957211769325,0,0,0,0,0.181630511148827,0,0,0.0836726148807695,0,0,-0.0920328098005262,0,0,0,0,0,0,0.110051120114715,0.248353388353852,-0.0648447705794983,0,0,0,0.189679425926921,0.181630511148827,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0.154656301512349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181630511148827,0.0908152555744135,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.0962263733676548,0,0,0,0,0,0,0.181630511148827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181630511148827,0,0,0,0.0827011298683576,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261090527785644,0,0.0972538789188,0,0,0,0,0,0,0,0,0,0,0,0.181630511148827,0,0,0,0,0.33881489578155,0,0,0,0,0.26167549236378,0,0,0,0,0,0,0.992435331952337,-0.087428497801853,0,0,0.181630511148827,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.163372177210605,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.94307629217786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.168294260991719,-0.160024770730062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0217094669402108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.061118333201738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309312603024698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0456327995847711,0,0,0,0,0.181630511148827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0908152555744135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.086828584122869,0,0,0,0,0,0,0,0.0589345141518262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0670754720568515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0590986695260305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0908152555744135,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0842868839357301,0,0.0908152555744135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.27161351661746,0,0,-0.0422874684771159,0,-0.0762353313415692,0,0,0,0,0,0,0.106349337625054,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,0.017317799088455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,0,-0.397074688522015,0,0,-0.258808335283824,0,0,0,0,0,-0.174992895090299,-0.374422890434477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,-0.269475635594569,0.181630511148827,-0.197205743201597,0,0,-0.0781053106522872,0,0,0,-0.0959594073735869 | ||
Line 80: | Line 82: | ||
|rna_tube_id=117H7 | |rna_tube_id=117H7 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10010.CGTACG | |||
|sample_age=59 | |sample_age=59 | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 103: | Line 106: | ||
|top_motifs=ALX4:2.24660337341;NKX2-2,8:2.0611678281;GZF1:1.74455891267;TAL1_TCF{3,4,12}:1.66044006579;NKX3-1:1.62828803762;UFEwm:1.50215090949;HOX{A5,B5}:1.39106167137;HSF1,2:1.28604303952;ZNF238:1.23192692236;ALX1:1.22822551312;SMAD1..7,9:1.15280051726;ZBTB6:1.06840503351;KLF4:1.06459140548;PAX1,9:1.05705420256;SPZ1:1.00554804108;HES1:0.975039463995;TFAP4:0.936751649923;EN1,2:0.9350394502;GLI1..3:0.934239554511;XBP1:0.915164407081;ZNF423:0.907332943014;TLX1..3_NFIC{dimer}:0.898477029068;RXR{A,B,G}:0.897931979597;PPARG:0.873049319781;GATA4:0.863945468341;POU3F1..4:0.853452521589;HMX1:0.828387304708;NFE2L2:0.802454929731;PAX8:0.788863614789;MYFfamily:0.758230829842;EBF1:0.756011010045;TFCP2:0.754574585716;ZIC1..3:0.750937715795;NR3C1:0.701214876745;TBX4,5:0.673951253564;NFIX:0.656053136259;FOXM1:0.602494027514;T:0.599611061512;TEF:0.599346348759;MYBL2:0.583066393251;NFE2L1:0.569656645436;ESRRA:0.563915312788;ZNF384:0.562934503524;TOPORS:0.560969244145;ATF6:0.492312073208;EVI1:0.489772590566;TEAD1:0.479030856967;YY1:0.456065060834;HAND1,2:0.430456047553;NANOG{mouse}:0.427323446938;TP53:0.416550825395;PRDM1:0.409912236998;FOX{I1,J2}:0.406932720521;IKZF1:0.344750327733;ARID5B:0.332296390087;BACH2:0.331570892519;MYB:0.328952880263;IRF1,2:0.320667044446;TBP:0.315647876921;NFATC1..3:0.302222737114;NR1H4:0.294004361891;HLF:0.280335499349;MZF1:0.276555958767;HOXA9_MEIS1:0.270982396162;ONECUT1,2:0.270861935075;GCM1,2:0.269883711384;FOS_FOS{B,L1}_JUN{B,D}:0.269866153879;PAX4:0.265296404455;GTF2I:0.253593414741;MAFB:0.248902408818;FOXQ1:0.230200159187;ESR1:0.223291823005;SRF:0.222548971339;bHLH_family:0.196068178641;HOX{A4,D4}:0.187650925941;RXRA_VDR{dimer}:0.156595590059;HMGA1,2:0.146511894719;HBP1_HMGB_SSRP1_UBTF:0.141323308836;PAX3,7:0.131588698475;CDC5L:0.12871404041;HOX{A6,A7,B6,B7}:0.113284707325;GFI1B:0.085489653678;PBX1:0.0841300784535;FOXL1:0.0724805710733;MTF1:0.0718169141794;TLX2:0.0577702423438;E2F1..5:0.0566523445592;LMO2:0.0558894669898;GTF2A1,2:0.0541713922751;PATZ1:0.0198762752637;ADNP_IRX_SIX_ZHX:0.0196480923199;TFDP1:0.012410963729;POU6F1:0.0110595661952;REST:0.00197252686869;PAX5:-0.000287317472401;NHLH1,2:-0.00728305910523;ZNF148:-0.00953393137328;NFIL3:-0.0113948107094;HNF1A:-0.0210283885579;CDX1,2,4:-0.0330500244911;SOX17:-0.0412247287336;FOSL2:-0.0535321257452;IRF7:-0.0571284275939;RFX1:-0.0608409683287;RUNX1..3:-0.0611452312912;ZBTB16:-0.0693067895511;FOXO1,3,4:-0.0737918535012;NKX3-2:-0.0858009477008;LEF1_TCF7_TCF7L1,2:-0.103741961306;NKX6-1,2:-0.116572850068;POU5F1:-0.119841194829;GFI1:-0.120536090366;MTE{core}:-0.12744618086;PRRX1,2:-0.134168706729;LHX3,4:-0.138228995503;RREB1:-0.138817475646;FOXD3:-0.139486134922;TFAP2{A,C}:-0.141204874434;NFKB1_REL_RELA:-0.144190455512;STAT2,4,6:-0.150906580645;HIC1:-0.161868208445;NKX2-1,4:-0.172178426448;BPTF:-0.172808478526;NFE2:-0.185990059853;ELF1,2,4:-0.190203936186;HNF4A_NR2F1,2:-0.227746684308;EGR1..3:-0.229584799197;ZFP161:-0.234698738161;DMAP1_NCOR{1,2}_SMARC:-0.254496757669;AIRE:-0.256350306425;JUN:-0.256429636339;ELK1,4_GABP{A,B1}:-0.263502826919;XCPE1{core}:-0.271422015491;AHR_ARNT_ARNT2:-0.27596875528;MED-1{core}:-0.281975774529;CEBPA,B_DDIT3:-0.284963134623;IKZF2:-0.294580035119;SPI1:-0.304234552966;SOX2:-0.308505080273;RFX2..5_RFXANK_RFXAP:-0.31345363874;ETS1,2:-0.328704719971;TFAP2B:-0.329522541558;NR6A1:-0.33356460366;NR5A1,2:-0.354276518143;CRX:-0.366636412431;POU2F1..3:-0.372445079441;DBP:-0.392566895809;ZNF143:-0.420619006326;SOX5:-0.426258935667;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.438191331074;MAZ:-0.455908561724;NRF1:-0.497853959631;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.520887293298;PDX1:-0.523365322632;SPIB:-0.524308031345;NKX2-3_NKX2-5:-0.54581571654;MEF2{A,B,C,D}:-0.622370232553;AR:-0.644294128887;SP1:-0.681673359406;CREB1:-0.694527412424;PAX6:-0.737020965147;PAX2:-0.738018310592;EP300:-0.744519600443;SNAI1..3:-0.751565437902;FOXN1:-0.753643550666;ATF5_CREB3:-0.761348281204;STAT5{A,B}:-0.763519155727;ATF2:-0.773726248321;OCT4_SOX2{dimer}:-0.785081163621;CUX2:-0.793298738071;VSX1,2:-0.810794204973;GATA6:-0.833987725551;TGIF1:-0.847112143232;ZEB1:-0.858576733664;FOXA2:-0.866828359819;RBPJ:-0.86971960047;MYOD1:-0.875846151458;NFY{A,B,C}:-0.879490889231;PITX1..3:-0.88704466379;STAT1,3:-0.890217026463;SOX{8,9,10}:-0.898392089787;SREBF1,2:-0.903938815663;FOXP1:-0.9113549349;RORA:-0.952648537723;POU1F1:-1.01140678192;NANOG:-1.02440353276;FOXP3:-1.04070599407;FOX{D1,D2}:-1.10737575857;ATF4:-1.17174533797;HIF1A:-1.2534977376;BREu{core}:-1.31310888136;FOX{F1,F2,J1}:-1.44681438811 | |top_motifs=ALX4:2.24660337341;NKX2-2,8:2.0611678281;GZF1:1.74455891267;TAL1_TCF{3,4,12}:1.66044006579;NKX3-1:1.62828803762;UFEwm:1.50215090949;HOX{A5,B5}:1.39106167137;HSF1,2:1.28604303952;ZNF238:1.23192692236;ALX1:1.22822551312;SMAD1..7,9:1.15280051726;ZBTB6:1.06840503351;KLF4:1.06459140548;PAX1,9:1.05705420256;SPZ1:1.00554804108;HES1:0.975039463995;TFAP4:0.936751649923;EN1,2:0.9350394502;GLI1..3:0.934239554511;XBP1:0.915164407081;ZNF423:0.907332943014;TLX1..3_NFIC{dimer}:0.898477029068;RXR{A,B,G}:0.897931979597;PPARG:0.873049319781;GATA4:0.863945468341;POU3F1..4:0.853452521589;HMX1:0.828387304708;NFE2L2:0.802454929731;PAX8:0.788863614789;MYFfamily:0.758230829842;EBF1:0.756011010045;TFCP2:0.754574585716;ZIC1..3:0.750937715795;NR3C1:0.701214876745;TBX4,5:0.673951253564;NFIX:0.656053136259;FOXM1:0.602494027514;T:0.599611061512;TEF:0.599346348759;MYBL2:0.583066393251;NFE2L1:0.569656645436;ESRRA:0.563915312788;ZNF384:0.562934503524;TOPORS:0.560969244145;ATF6:0.492312073208;EVI1:0.489772590566;TEAD1:0.479030856967;YY1:0.456065060834;HAND1,2:0.430456047553;NANOG{mouse}:0.427323446938;TP53:0.416550825395;PRDM1:0.409912236998;FOX{I1,J2}:0.406932720521;IKZF1:0.344750327733;ARID5B:0.332296390087;BACH2:0.331570892519;MYB:0.328952880263;IRF1,2:0.320667044446;TBP:0.315647876921;NFATC1..3:0.302222737114;NR1H4:0.294004361891;HLF:0.280335499349;MZF1:0.276555958767;HOXA9_MEIS1:0.270982396162;ONECUT1,2:0.270861935075;GCM1,2:0.269883711384;FOS_FOS{B,L1}_JUN{B,D}:0.269866153879;PAX4:0.265296404455;GTF2I:0.253593414741;MAFB:0.248902408818;FOXQ1:0.230200159187;ESR1:0.223291823005;SRF:0.222548971339;bHLH_family:0.196068178641;HOX{A4,D4}:0.187650925941;RXRA_VDR{dimer}:0.156595590059;HMGA1,2:0.146511894719;HBP1_HMGB_SSRP1_UBTF:0.141323308836;PAX3,7:0.131588698475;CDC5L:0.12871404041;HOX{A6,A7,B6,B7}:0.113284707325;GFI1B:0.085489653678;PBX1:0.0841300784535;FOXL1:0.0724805710733;MTF1:0.0718169141794;TLX2:0.0577702423438;E2F1..5:0.0566523445592;LMO2:0.0558894669898;GTF2A1,2:0.0541713922751;PATZ1:0.0198762752637;ADNP_IRX_SIX_ZHX:0.0196480923199;TFDP1:0.012410963729;POU6F1:0.0110595661952;REST:0.00197252686869;PAX5:-0.000287317472401;NHLH1,2:-0.00728305910523;ZNF148:-0.00953393137328;NFIL3:-0.0113948107094;HNF1A:-0.0210283885579;CDX1,2,4:-0.0330500244911;SOX17:-0.0412247287336;FOSL2:-0.0535321257452;IRF7:-0.0571284275939;RFX1:-0.0608409683287;RUNX1..3:-0.0611452312912;ZBTB16:-0.0693067895511;FOXO1,3,4:-0.0737918535012;NKX3-2:-0.0858009477008;LEF1_TCF7_TCF7L1,2:-0.103741961306;NKX6-1,2:-0.116572850068;POU5F1:-0.119841194829;GFI1:-0.120536090366;MTE{core}:-0.12744618086;PRRX1,2:-0.134168706729;LHX3,4:-0.138228995503;RREB1:-0.138817475646;FOXD3:-0.139486134922;TFAP2{A,C}:-0.141204874434;NFKB1_REL_RELA:-0.144190455512;STAT2,4,6:-0.150906580645;HIC1:-0.161868208445;NKX2-1,4:-0.172178426448;BPTF:-0.172808478526;NFE2:-0.185990059853;ELF1,2,4:-0.190203936186;HNF4A_NR2F1,2:-0.227746684308;EGR1..3:-0.229584799197;ZFP161:-0.234698738161;DMAP1_NCOR{1,2}_SMARC:-0.254496757669;AIRE:-0.256350306425;JUN:-0.256429636339;ELK1,4_GABP{A,B1}:-0.263502826919;XCPE1{core}:-0.271422015491;AHR_ARNT_ARNT2:-0.27596875528;MED-1{core}:-0.281975774529;CEBPA,B_DDIT3:-0.284963134623;IKZF2:-0.294580035119;SPI1:-0.304234552966;SOX2:-0.308505080273;RFX2..5_RFXANK_RFXAP:-0.31345363874;ETS1,2:-0.328704719971;TFAP2B:-0.329522541558;NR6A1:-0.33356460366;NR5A1,2:-0.354276518143;CRX:-0.366636412431;POU2F1..3:-0.372445079441;DBP:-0.392566895809;ZNF143:-0.420619006326;SOX5:-0.426258935667;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.438191331074;MAZ:-0.455908561724;NRF1:-0.497853959631;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.520887293298;PDX1:-0.523365322632;SPIB:-0.524308031345;NKX2-3_NKX2-5:-0.54581571654;MEF2{A,B,C,D}:-0.622370232553;AR:-0.644294128887;SP1:-0.681673359406;CREB1:-0.694527412424;PAX6:-0.737020965147;PAX2:-0.738018310592;EP300:-0.744519600443;SNAI1..3:-0.751565437902;FOXN1:-0.753643550666;ATF5_CREB3:-0.761348281204;STAT5{A,B}:-0.763519155727;ATF2:-0.773726248321;OCT4_SOX2{dimer}:-0.785081163621;CUX2:-0.793298738071;VSX1,2:-0.810794204973;GATA6:-0.833987725551;TGIF1:-0.847112143232;ZEB1:-0.858576733664;FOXA2:-0.866828359819;RBPJ:-0.86971960047;MYOD1:-0.875846151458;NFY{A,B,C}:-0.879490889231;PITX1..3:-0.88704466379;STAT1,3:-0.890217026463;SOX{8,9,10}:-0.898392089787;SREBF1,2:-0.903938815663;FOXP1:-0.9113549349;RORA:-0.952648537723;POU1F1:-1.01140678192;NANOG:-1.02440353276;FOXP3:-1.04070599407;FOX{D1,D2}:-1.10737575857;ATF4:-1.17174533797;HIF1A:-1.2534977376;BREu{core}:-1.31310888136;FOX{F1,F2,J1}:-1.44681438811 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11357-117H7;search_select_hide=table117:FF:11357-117H7 | |||
}} | }} |
Latest revision as of 17:54, 4 June 2020
Name: | Preadipocyte - visceral, donor2 |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | CNhs11982 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Download raw sequence, BAM & CTSS | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11982
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11982
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.236 |
10 | 10 | 0.0968 |
100 | 100 | 0.889 |
101 | 101 | 0.738 |
102 | 102 | 0.788 |
103 | 103 | 0.059 |
104 | 104 | 0.958 |
105 | 105 | 0.491 |
106 | 106 | 0.0168 |
107 | 107 | 0.0136 |
108 | 108 | 0.314 |
109 | 109 | 0.151 |
11 | 11 | 0.157 |
110 | 110 | 0.127 |
111 | 111 | 0.526 |
112 | 112 | 0.0826 |
113 | 113 | 0.355 |
114 | 114 | 0.159 |
115 | 115 | 0.0172 |
116 | 116 | 0.0455 |
117 | 117 | 0.239 |
118 | 118 | 0.939 |
119 | 119 | 0.703 |
12 | 12 | 0.239 |
120 | 120 | 0.0229 |
121 | 121 | 0.601 |
122 | 122 | 0.0271 |
123 | 123 | 0.303 |
124 | 124 | 0.328 |
125 | 125 | 0.177 |
126 | 126 | 0.813 |
127 | 127 | 0.307 |
128 | 128 | 0.0978 |
129 | 129 | 0.807 |
13 | 13 | 0.92 |
130 | 130 | 0.909 |
131 | 131 | 0.642 |
132 | 132 | 0.862 |
133 | 133 | 0.437 |
134 | 134 | 0.723 |
135 | 135 | 0.588 |
136 | 136 | 0.824 |
137 | 137 | 0.587 |
138 | 138 | 0.537 |
139 | 139 | 0.662 |
14 | 14 | 0.422 |
140 | 140 | 0.31 |
141 | 141 | 0.807 |
142 | 142 | 0.372 |
143 | 143 | 0.0242 |
144 | 144 | 0.63 |
145 | 145 | 0.57 |
146 | 146 | 0.845 |
147 | 147 | 0.269 |
148 | 148 | 0.00515 |
149 | 149 | 0.0146 |
15 | 15 | 0.547 |
150 | 150 | 0.207 |
151 | 151 | 0.539 |
152 | 152 | 0.0728 |
153 | 153 | 0.968 |
154 | 154 | 0.884 |
155 | 155 | 0.204 |
156 | 156 | 0.479 |
157 | 157 | 0.834 |
158 | 158 | 0.0654 |
159 | 159 | 0.472 |
16 | 16 | 0.0368 |
160 | 160 | 0.198 |
161 | 161 | 0.585 |
162 | 162 | 0.53 |
163 | 163 | 0.782 |
164 | 164 | 0.422 |
165 | 165 | 0.465 |
166 | 166 | 0.193 |
167 | 167 | 0.327 |
168 | 168 | 0.522 |
169 | 169 | 0.0124 |
17 | 17 | 0.39 |
18 | 18 | 0.081 |
19 | 19 | 0.0222 |
2 | 2 | 0.141 |
20 | 20 | 0.0801 |
21 | 21 | 0.0709 |
22 | 22 | 0.272 |
23 | 23 | 0.105 |
24 | 24 | 0.505 |
25 | 25 | 0.479 |
26 | 26 | 0.0637 |
27 | 27 | 0.109 |
28 | 28 | 0.412 |
29 | 29 | 0.0929 |
3 | 3 | 0.164 |
30 | 30 | 0.412 |
31 | 31 | 0.774 |
32 | 32 | 1.15539e-5 |
33 | 33 | 0.774 |
34 | 34 | 0.513 |
35 | 35 | 0.173 |
36 | 36 | 0.0804 |
37 | 37 | 0.105 |
38 | 38 | 0.713 |
39 | 39 | 0.148 |
4 | 4 | 0.848 |
40 | 40 | 0.256 |
41 | 41 | 0.876 |
42 | 42 | 0.562 |
43 | 43 | 0.16 |
44 | 44 | 0.113 |
45 | 45 | 0.802 |
46 | 46 | 0.0387 |
47 | 47 | 0.16 |
48 | 48 | 0.286 |
49 | 49 | 0.602 |
5 | 5 | 0.844 |
50 | 50 | 0.712 |
51 | 51 | 0.324 |
52 | 52 | 0.754 |
53 | 53 | 0.694 |
54 | 54 | 0.562 |
55 | 55 | 0.12 |
56 | 56 | 0.472 |
57 | 57 | 0.475 |
58 | 58 | 0.92 |
59 | 59 | 0.0128 |
6 | 6 | 0.716 |
60 | 60 | 0.405 |
61 | 61 | 0.589 |
62 | 62 | 0.31 |
63 | 63 | 0.332 |
64 | 64 | 0.488 |
65 | 65 | 0.165 |
66 | 66 | 0.506 |
67 | 67 | 0.261 |
68 | 68 | 0.306 |
69 | 69 | 0.777 |
7 | 7 | 0.808 |
70 | 70 | 0.405 |
71 | 71 | 0.0243 |
72 | 72 | 0.836 |
73 | 73 | 0.085 |
74 | 74 | 0.0071 |
75 | 75 | 0.307 |
76 | 76 | 0.895 |
77 | 77 | 0.0411 |
78 | 78 | 0.58 |
79 | 79 | 0.0122 |
8 | 8 | 0.0204 |
80 | 80 | 0.699 |
81 | 81 | 0.319 |
82 | 82 | 0.353 |
83 | 83 | 0.332 |
84 | 84 | 0.36 |
85 | 85 | 0.314 |
86 | 86 | 0.303 |
87 | 87 | 0.128 |
88 | 88 | 0.752 |
89 | 89 | 0.0257 |
9 | 9 | 0.12 |
90 | 90 | 0.261 |
91 | 91 | 0.0539 |
92 | 92 | 0.2 |
93 | 93 | 0.622 |
94 | 94 | 0.287 |
95 | 95 | 0.0908 |
96 | 96 | 0.197 |
97 | 97 | 0.534 |
98 | 98 | 0.774 |
99 | 99 | 0.00623 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11982
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002582 (visceral preadipocyte)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000143 (human visceral preadipocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)