FF:11397-118D2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005750 | ||
|ancestors_in_cell_lineage_facet=CL:0000000 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005750 | ||
|accession_numbers=CAGE;DRX008460;DRR009332;DRZ000757;DRZ002142;DRZ012107;DRZ013492 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037210;DRR041576;DRZ007218 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000723,CL:0000035,CL:0000548,CL:0000680,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188,CL:0000034,CL:0000594 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000165 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!2.00!98.95!MYOG;;chr8:25902876..25902936,-!p1@EBF2!1.76!55.99!EBF2;;chr12:66218255..66218304,+!p3@HMGA2!1.65!113.35!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.45!74.06!TWIST1;;chr12:66218212..66218244,+!p5@HMGA2!1.42!36.82!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.35!29.15!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!1.29!35.37!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.28!17.90!HOXC5;;chr6:34204921..34204939,+!p3@HMGA1!1.26!504.29!HMGA1;;chr12:66218598..66218645,+!p2@HMGA2!1.26!78.83!HMGA2;;chr11:17741111..17741124,+!p1@MYOD1!1.25!16.79!MYOD1;;chr1:170632285..170632309,+!p1@PRRX1!1.22!17.64!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.19!25.82!ZFP106;;chr2:5832508..5832524,+!p1@SOX11!1.16!13.30!SOX11;;chr7:15726296..15726315,-!p1@MEOX2!1.15!13.12!MEOX2;;chr17:1959369..1959388,+!p2@HIC1!1.14!33.66!HIC1;;chr14:61116183..61116208,-!p1@SIX1!1.12!45.94!SIX1;;chr1:170633262..170633285,+!p3@PRRX1!1.08!12.70!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!1.01!9.20!HOXC8;;chr15:57511609..57511651,+!p2@TCF12!0.98!14.74!TCF12;;chr7:27192185..27192209,-!p1@HOXA3!0.95!7.93!HOXA3;;chr12:54393880..54393962,+!p1@HOXC9!0.94!7.67!HOXC9;;chr7:27205106..27205134,-!p2@HOXA9!0.91!7.16!HOXA9;;chr1:40105299..40105326,-!p1@HEYL!0.91!7.16!HEYL;;chr5:158526917..158526932,-!p1@EBF1!0.90!17.90!EBF1;;chr7:15726243..15726293,-!p2@MEOX2!0.90!6.99!MEOX2;;chr7:27205136..27205164,-!p1@HOXA9!0.90!6.90!HOXA9;;chr17:1958388..1958404,+!p1@HIC1!0.88!44.57!HIC1;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.81!SNAI2;;chr17:59477233..59477263,+!p1@TBX2!0.88!21.56!TBX2;;chr3:12330560..12330579,+!p1@PPARG!0.88!7.59!PPARG;;chr11:46299199..46299233,+!p1@CREB3L1!0.87!35.03!CREB3L1;;chr2:176994408..176994492,+!p1@HOXD8!0.87!6.48!HOXD8;;chr6:34204672..34204692,+!p1@HMGA1!0.84!711.47!HMGA1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.84!6.39!GLIS1;;chr2:102091566..102091581,-!p1@RFX8!0.84!5.97!RFX8;;chr3:147127142..147127168,+!p1@ZIC1!0.84!5.88!ZIC1;;chr21:36421535..36421610,-!p2@RUNX1!0.83!21.56!RUNX1;;chr7:19157043..19157088,-!p2@TWIST1!0.83!15.34!TWIST1;;chr12:66218378..66218401,+!p6@HMGA2!0.83!9.12!HMGA2;;chr8:49833978..49833996,-!p1@SNAI2!0.82!123.58!SNAI2;;chr3:12329358..12329393,+!p3@PPARG!0.82!14.57!PPARG;;chr9:16870659..16870675,-!p2@BNC2!0.82!6.99!BNC2;;chr12:66218836..66218888,+!p1@HMGA2!0.81!55.40!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!0.81!5.45!EBF3;;chr12:66218420..66218439,+!p12@HMGA2!0.81!5.45!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.81!5.45!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!0.80!5.88!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!0.78!5.37!HMGA2;;chr21:47063625..47063658,+!p1@PCBP3!0.77!23.18!PCBP3;;chr12:66218573..66218596,+!p7@HMGA2!0.77!7.67!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.77!4.94!HMGA2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.77!4.86!HOXC5;;chr3:12329397..12329433,+!p2@PPARG!0.76!11.59!PPARG;;chr19:45260775..45260838,+!p5@BCL3!0.75!6.14!BCL3;;chr1:170632477..170632506,+!p6@PRRX1!0.75!4.60!PRRX1;;chr9:16870710..16870763,-!p1@BNC2!0.74!8.27!BNC2;;chr11:46299539..46299620,+!p2@CREB3L1!0.74!7.93!CREB3L1;;chr2:239756671..239756732,+!p1@TWIST2!0.73!15.34!TWIST2;;chr16:86600426..86600441,+!p1@FOXC2!0.73!11.85!FOXC2;;chr9:16705069..16705086,-!p3@BNC2!0.73!4.43!BNC2;;chr17:46682321..46682362,-!p1@HOXB6!0.73!4.35!HOXB6;;chr12:54402790..54402805,+!p2@HOXC8!0.72!4.26!HOXC8;;chr12:54378923..54378966,+!p1@HOXC10!0.71!4.18!HOXC10;;chr2:119604456..119604501,-!p2@EN1!0.71!4.18!EN1;;chr3:147111231..147111281,+!p3@ZIC1!0.71!4.09!ZIC1;;chr1:119530493..119530572,-!p1@TBX15!0.71!4.09!TBX15;;chr4:299227..299272,-!p1@ZNF732!0.70!4.01!ZNF732;;chr12:66218443..66218461,+!p8@HMGA2!0.69!5.11!HMGA2;;chr12:54394309..54394336,+!p2@HOXC9!0.69!3.92!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.69!3.92!HOXC5;;chr2:121493425..121493474,+!p1@GLI2!0.68!9.20!GLI2;;chr11:65686802..65686818,+!p6@DRAP1!0.68!7.16!DRAP1;;chr20:50721803..50721857,-!p2@ZFP64!0.68!6.31!ZFP64;;chr2:45236540..45236577,-!p1@SIX2!0.68!3.84!SIX2;;chr8:128748308..128748324,+!p2@MYC!0.66!115.06!MYC;;chr7:15725757..15725828,-!p5@MEOX2!0.66!3.58!MEOX2;;chr2:68592406..68592424,+!p1@PLEK!0.66!3.58!PLEK;;chr11:65686732..65686756,+!p2@DRAP1!0.65!16.70!DRAP1;;chr2:19558373..19558392,-!p1@OSR1!0.65!10.57!OSR1;;chr6:45390025..45390076,+!p2@RUNX2!0.65!9.29!RUNX2;;chr6:85474299..85474324,-!p1@TBX18!0.65!6.73!TBX18;;chr15:83953397..83953425,-!p1@BNC1!0.65!4.09!BNC1;;chr1:170632723..170632739,+!p8@PRRX1!0.65!3.49!PRRX1;;chr14:61116168..61116180,-!p2@SIX1!0.64!4.01!SIX1;;chr11:17741254..17741282,+!p2@MYOD1!0.64!3.41!MYOD1;;chr17:59477403..59477414,+!p4@TBX2!0.64!3.41!TBX2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.64!3.32!PEG3;;chr1:170632439..170632465,+!p11@PRRX1!0.64!3.32!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!0.63!3.24!PAX3;;chr11:125034640..125034655,+!p1@PKNOX2!0.63!3.24!PKNOX2;;chr12:54394059..54394088,+!p3@HOXC9!0.62!3.15!HOXC9;;chr16:1031762..1031781,+!p1@SOX8!0.62!3.15!SOX8;;chr5:158527104..158527135,-!p4@EBF1!0.62!3.15!EBF1;;chr17:41277372..41277418,-!p1@BRCA1!0.61!12.95!BRCA1;;chr17:59477197..59477212,+!p2@TBX2!0.61!5.80!TBX2;;chr17:59477275..59477286,+!p3@TBX2!0.61!4.35!TBX2;;chr15:67357924..67357952,+!p2@SMAD3!0.60!23.44!SMAD3;;chr11:65667884..65667895,-!p2@FOSL1!0.60!13.64!FOSL1;;chr6:85473156..85473210,-!p2@TBX18!0.60!3.75!TBX18;;chr12:81110684..81110700,+!p1@MYF5!0.59!2.90!MYF5;;chr3:147111198..147111225,+!p4@ZIC1!0.59!2.90!ZIC1;;chr6:31126291..31126399,+!p1@TCF19!0.58!32.47!TCF19;;chr12:3068544..3068597,+!p1@TEAD4!0.58!20.20!TEAD4;;chr2:239148671..239148686,-!p1@HES6!0.58!12.10!HES6;;chr2:239756739..239756755,+!p2@TWIST2!0.58!5.37!TWIST2;;chr19:22817119..22817145,+!p1@ZNF492!0.58!5.11!ZNF492;;chr19:46801639..46801699,+!p1@HIF3A!0.58!2.81!HIF3A;;chr19:47523058..47523114,+!p1@NPAS1!0.58!2.81!NPAS1;;chr12:66218469..66218477,+!p16@HMGA2!0.58!2.81!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!0.58!2.81!HMGA2;;chr9:16728161..16728185,-!p4@BNC2!0.58!2.81!BNC2;;chr9:16728327..16728338,-!p5@BNC2!0.58!2.81!BNC2;;chr20:42295713..42295738,+!p2@MYBL2!0.57!19.43!MYBL2;;chr8:77593474..77593612,+!p1@ZFHX4!0.57!13.64!ZFHX4;;chr17:46622205..46622218,-!p3@HOXB2!0.57!3.24!HOXB2;;chr12:54447637..54447659,+!p4@HOXC4!0.57!2.73!HOXC4;;chr12:115121962..115121987,-!p1@TBX3!0.56!27.61!TBX3;;chr5:88178983..88179012,-!p1@MEF2C!0.56!25.06!MEF2C;;chr12:2986206..2986258,-!p2@FOXM1!0.56!19.69!FOXM1;;chr14:62162285..62162296,+!p3@HIF1A!0.56!16.79!HIF1A;;chr7:42276822..42276895,-!p2@GLI3!0.56!9.20!GLI3;;chr1:247171347..247171366,-!p2@ZNF695!0.56!5.37!ZNF695;;chr5:321810..321877,+!p1@AHRR!0.55!9.63!AHRR;;chr7:27183263..27183284,-!p2@HOXA5!0.55!2.56!HOXA5;;chr17:41622765..41622821,-!p2@ETV4!0.54!4.18!ETV4;;chr11:47400078..47400106,-!p1@SPI1!0.54!2.47!SPI1;;chr12:66218904..66218913,+!p11@HMGA2!0.54!2.47!HMGA2;;chr12:2986275..2986363,-!p1@FOXM1!0.53!30.34!FOXM1;;chr15:96873984..96873999,+!p3@NR2F2!0.53!22.16!NR2F2;;chr8:116681409..116681431,-!p2@TRPS1!0.53!7.76!TRPS1;;chr11:47279504..47279563,+!p1@NR1H3!0.53!6.39!NR1H3;;chr11:113930425..113930471,+!p1@ZBTB16!0.53!3.84!ZBTB16;;chr17:46687959..46688007,-!p2@HOXB7!0.53!3.58!HOXB7;;chr11:17741084..17741094,+!p3@MYOD1!0.53!2.39!MYOD1;;chr5:72744594..72744609,-!p1@FOXD1!0.52!13.38!FOXD1;;chr18:22932080..22932170,-!p1@ZNF521!0.52!12.36!ZNF521;;chr2:5832493..5832507,+!p2@SOX11!0.52!2.30!SOX11;;chr1:170633058..170633084,+!p5@PRRX1!0.52!2.30!PRRX1;;chr5:133450365..133450444,+!p1@TCF7!0.51!13.04!TCF7;;chr17:46622114..46622138,-!p4@HOXB2!0.51!3.84!HOXB2;;chr7:27183291..27183324,-!p1@HOXA5!0.51!2.22!HOXA5;;chr10:119303078..119303169,+!p2@EMX2!0.51!2.22!EMX2;;chr12:54380036..54380091,+!p4@HOXC10!0.51!2.22!HOXC10;;chr3:12329339..12329356,+!p5@PPARG!0.51!2.22!PPARG;;chr2:121493492..121493537,+!p2@GLI2!0.50!4.09!GLI2;;chr17:46655704..46655718,-!p2@HOXB4!0.50!3.58!HOXB4;;chr17:46622229..46622257,-!p6@HOXB2!0.50!2.64!HOXB2;;chr3:25470156..25470227,+!p2@RARB!0.50!2.13!RARB;;chr12:54380404..54380433,+!p3@HOXC10!0.50!2.13!HOXC10;;chr1:151032860..151032918,+!p1@MLLT11!0.49!33.32!MLLT11;;chr9:4300050..4300118,-!p1@GLIS3!0.49!17.81!GLIS3;;chr19:49865646..49865718,-!p1@TEAD2!0.48!23.01!TEAD2;;chr19:1592714..1592762,-!p1@MBD3!0.48!20.54!MBD3;;chr5:138609782..138609826,+!p5@MATR3!0.48!17.22!MATR3;;chr12:3069037..3069119,+!p2@TEAD4!0.48!8.78!TEAD4;;chr1:61547894..61547968,+!p2@NFIA!0.48!7.33!NFIA;;chr8:106330656..106330684,+!p1@ZFPM2!0.48!6.56!ZFPM2;;chr2:169312600..169312606,+!p2@CERS6!0.48!3.66!CERS6;;chr17:41622925..41622976,-!p3@ETV4!0.48!3.41!ETV4;;chr19:23299814..23299844,+!p1@ZNF730!0.48!2.64!ZNF730;;chr17:46675558..46675577,-!p2@HOXB6!0.48!2.05!HOXB6;;chr11:125034605..125034636,+!p2@PKNOX2!0.48!2.05!PKNOX2;;chr19:13134772..13134822,+!p2@NFIX!0.47!3.24!NFIX;;chr6:45390077..45390105,+!p9@RUNX2!0.47!2.73!RUNX2;;chr1:221052840..221052875,+!p4@HLX!0.47!2.47!HLX;;chr11:46299186..46299195,+!p3@CREB3L1!0.47!2.30!CREB3L1;;chr1:170632137..170632172,+!p10@PRRX1!0.47!1.96!PRRX1;;chr2:24714729..24714761,+!p1@NCOA1!0.47!1.96!NCOA1;;chr7:15726220..15726236,-!p4@MEOX2!0.47!1.96!MEOX2;;chr17:41622731..41622764,-!p5@ETV4!0.47!1.96!ETV4;;chr4:1873100..1873152,+!p1@WHSC1!0.46!19.43!WHSC1;;chr14:55493763..55493824,-!p1@WDHD1!0.46!19.18!WDHD1;;chr17:61919985..61920012,-!p3@SMARCD2!0.46!5.71!SMARCD2;;chr20:31350184..31350200,+!p1@DNMT3B!0.46!4.77!DNMT3B;;chr2:185463247..185463263,+!p1@ZNF804A!0.46!3.92!ZNF804A;;chr1:247171316..247171336,-!p3@ZNF695!0.46!3.24!ZNF695;;chr5:158526459..158526481,-!p2@EBF1!0.46!2.81!EBF1;;chr17:46622440..46622477,-!p5@HOXB2!0.46!2.22!HOXB2;;chr7:27196267..27196311,-!p1@HOXA7!0.46!1.87!HOXA7;;chr12:54402729..54402743,+!p3@HOXC8!0.46!1.87!HOXC8;;chr14:62162258..62162269,+!p2@HIF1A!0.45!24.12!HIF1A;;chr19:20188776..20188826,+!p1@ZNF90!0.45!6.22!ZNF90;;chr12:54447599..54447630,+!p3@HOXC4!0.45!2.39!HOXC4;;chr12:54379029..54379057,+!p2@HOXC10!0.45!1.79!HOXC10;;chr15:57511589..57511608,+!p4@TCF12!0.45!1.79!TCF12;;chr19:2867325..2867348,+!p1@ZNF556!0.45!1.79!ZNF556;;chr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| |expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!2.00!98.95!MYOG;;chr8:25902876..25902936,-!p1@EBF2!1.76!55.99!EBF2;;chr12:66218255..66218304,+!p3@HMGA2!1.65!113.35!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.45!74.06!TWIST1;;chr12:66218212..66218244,+!p5@HMGA2!1.42!36.82!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.35!29.15!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!1.29!35.37!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.28!17.90!HOXC5;;chr6:34204921..34204939,+!p3@HMGA1!1.26!504.29!HMGA1;;chr12:66218598..66218645,+!p2@HMGA2!1.26!78.83!HMGA2;;chr11:17741111..17741124,+!p1@MYOD1!1.25!16.79!MYOD1;;chr1:170632285..170632309,+!p1@PRRX1!1.22!17.64!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.19!25.82!ZFP106;;chr2:5832508..5832524,+!p1@SOX11!1.16!13.30!SOX11;;chr7:15726296..15726315,-!p1@MEOX2!1.15!13.12!MEOX2;;chr17:1959369..1959388,+!p2@HIC1!1.14!33.66!HIC1;;chr14:61116183..61116208,-!p1@SIX1!1.12!45.94!SIX1;;chr1:170633262..170633285,+!p3@PRRX1!1.08!12.70!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!1.01!9.20!HOXC8;;chr15:57511609..57511651,+!p2@TCF12!0.98!14.74!TCF12;;chr7:27192185..27192209,-!p1@HOXA3!0.95!7.93!HOXA3;;chr12:54393880..54393962,+!p1@HOXC9!0.94!7.67!HOXC9;;chr7:27205106..27205134,-!p2@HOXA9!0.91!7.16!HOXA9;;chr1:40105299..40105326,-!p1@HEYL!0.91!7.16!HEYL;;chr5:158526917..158526932,-!p1@EBF1!0.90!17.90!EBF1;;chr7:15726243..15726293,-!p2@MEOX2!0.90!6.99!MEOX2;;chr7:27205136..27205164,-!p1@HOXA9!0.90!6.90!HOXA9;;chr17:1958388..1958404,+!p1@HIC1!0.88!44.57!HIC1;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.81!SNAI2;;chr17:59477233..59477263,+!p1@TBX2!0.88!21.56!TBX2;;chr3:12330560..12330579,+!p1@PPARG!0.88!7.59!PPARG;;chr11:46299199..46299233,+!p1@CREB3L1!0.87!35.03!CREB3L1;;chr2:176994408..176994492,+!p1@HOXD8!0.87!6.48!HOXD8;;chr6:34204672..34204692,+!p1@HMGA1!0.84!711.47!HMGA1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.84!6.39!GLIS1;;chr2:102091566..102091581,-!p1@RFX8!0.84!5.97!RFX8;;chr3:147127142..147127168,+!p1@ZIC1!0.84!5.88!ZIC1;;chr21:36421535..36421610,-!p2@RUNX1!0.83!21.56!RUNX1;;chr7:19157043..19157088,-!p2@TWIST1!0.83!15.34!TWIST1;;chr12:66218378..66218401,+!p6@HMGA2!0.83!9.12!HMGA2;;chr8:49833978..49833996,-!p1@SNAI2!0.82!123.58!SNAI2;;chr3:12329358..12329393,+!p3@PPARG!0.82!14.57!PPARG;;chr9:16870659..16870675,-!p2@BNC2!0.82!6.99!BNC2;;chr12:66218836..66218888,+!p1@HMGA2!0.81!55.40!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!0.81!5.45!EBF3;;chr12:66218420..66218439,+!p12@HMGA2!0.81!5.45!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.81!5.45!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!0.80!5.88!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!0.78!5.37!HMGA2;;chr21:47063625..47063658,+!p1@PCBP3!0.77!23.18!PCBP3;;chr12:66218573..66218596,+!p7@HMGA2!0.77!7.67!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.77!4.94!HMGA2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.77!4.86!HOXC5;;chr3:12329397..12329433,+!p2@PPARG!0.76!11.59!PPARG;;chr19:45260775..45260838,+!p5@BCL3!0.75!6.14!BCL3;;chr1:170632477..170632506,+!p6@PRRX1!0.75!4.60!PRRX1;;chr9:16870710..16870763,-!p1@BNC2!0.74!8.27!BNC2;;chr11:46299539..46299620,+!p2@CREB3L1!0.74!7.93!CREB3L1;;chr2:239756671..239756732,+!p1@TWIST2!0.73!15.34!TWIST2;;chr16:86600426..86600441,+!p1@FOXC2!0.73!11.85!FOXC2;;chr9:16705069..16705086,-!p3@BNC2!0.73!4.43!BNC2;;chr17:46682321..46682362,-!p1@HOXB6!0.73!4.35!HOXB6;;chr12:54402790..54402805,+!p2@HOXC8!0.72!4.26!HOXC8;;chr12:54378923..54378966,+!p1@HOXC10!0.71!4.18!HOXC10;;chr2:119604456..119604501,-!p2@EN1!0.71!4.18!EN1;;chr3:147111231..147111281,+!p3@ZIC1!0.71!4.09!ZIC1;;chr1:119530493..119530572,-!p1@TBX15!0.71!4.09!TBX15;;chr4:299227..299272,-!p1@ZNF732!0.70!4.01!ZNF732;;chr12:66218443..66218461,+!p8@HMGA2!0.69!5.11!HMGA2;;chr12:54394309..54394336,+!p2@HOXC9!0.69!3.92!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.69!3.92!HOXC5;;chr2:121493425..121493474,+!p1@GLI2!0.68!9.20!GLI2;;chr11:65686802..65686818,+!p6@DRAP1!0.68!7.16!DRAP1;;chr20:50721803..50721857,-!p2@ZFP64!0.68!6.31!ZFP64;;chr2:45236540..45236577,-!p1@SIX2!0.68!3.84!SIX2;;chr8:128748308..128748324,+!p2@MYC!0.66!115.06!MYC;;chr7:15725757..15725828,-!p5@MEOX2!0.66!3.58!MEOX2;;chr2:68592406..68592424,+!p1@PLEK!0.66!3.58!PLEK;;chr11:65686732..65686756,+!p2@DRAP1!0.65!16.70!DRAP1;;chr2:19558373..19558392,-!p1@OSR1!0.65!10.57!OSR1;;chr6:45390025..45390076,+!p2@RUNX2!0.65!9.29!RUNX2;;chr6:85474299..85474324,-!p1@TBX18!0.65!6.73!TBX18;;chr15:83953397..83953425,-!p1@BNC1!0.65!4.09!BNC1;;chr1:170632723..170632739,+!p8@PRRX1!0.65!3.49!PRRX1;;chr14:61116168..61116180,-!p2@SIX1!0.64!4.01!SIX1;;chr11:17741254..17741282,+!p2@MYOD1!0.64!3.41!MYOD1;;chr17:59477403..59477414,+!p4@TBX2!0.64!3.41!TBX2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.64!3.32!PEG3;;chr1:170632439..170632465,+!p11@PRRX1!0.64!3.32!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!0.63!3.24!PAX3;;chr11:125034640..125034655,+!p1@PKNOX2!0.63!3.24!PKNOX2;;chr12:54394059..54394088,+!p3@HOXC9!0.62!3.15!HOXC9;;chr16:1031762..1031781,+!p1@SOX8!0.6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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000594;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor3.CNhs12008.11397-118D2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor3.CNhs12008.11397-118D2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor3.CNhs12008.11397-118D2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor3.CNhs12008.11397-118D2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor3.CNhs12008.11397-118D2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11397-118D2 | |id=FF:11397-118D2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000165 | ||
|is_obsolete= | |||
|library_id=CNhs12008 | |||
|library_id_phase_based=2:CNhs12008 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11397 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GATCAG.11397 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11397 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GATCAG.11397 | |||
|name=Skeletal Muscle Satellite Cells, donor3 | |name=Skeletal Muscle Satellite Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12008,LSID837,release011,COMPLETED | |profile_hcage=CNhs12008,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=SC3515 | |rna_catalog_number=SC3515 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118D2 | |rna_tube_id=118D2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.GATCAG | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|top_motifs=TFDP1:1.24972140142;RXR{A,B,G}:1.23007519601;POU3F1..4:1.11693181593;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09942111418;E2F1..5:1.07561739196;GFI1:1.07319685105;EN1,2:1.05602059888;GZF1:0.979460534106;SRF:0.954681442821;TBP:0.908802992284;NR3C1:0.873843674113;HES1:0.842439053052;TFAP4:0.826860022097;GFI1B:0.819053203456;NKX3-1:0.808605800492;HSF1,2:0.770704904381;UFEwm:0.747212977558;NFY{A,B,C}:0.738652676081;ZNF143:0.719802490703;HOX{A5,B5}:0.714201520635;MEF2{A,B,C,D}:0.712381955024;TEAD1:0.700484748311;ALX4:0.694928729954;HOX{A4,D4}:0.667730800138;NKX2-1,4:0.651921944996;AIRE:0.632126613315;TAL1_TCF{3,4,12}:0.608301888108;KLF4:0.596272731639;RXRA_VDR{dimer}:0.518665170908;ZNF238:0.507782217451;NR1H4:0.505382966698;POU1F1:0.502917451016;NKX2-2,8:0.474679358822;MYBL2:0.465949094091;TLX1..3_NFIC{dimer}:0.463098744533;MZF1:0.453777849455;GATA4:0.45321961382;GTF2A1,2:0.44926917677;NHLH1,2:0.447924339623;YY1:0.444316644311;NRF1:0.424591345596;GLI1..3:0.421771692768;NANOG{mouse}:0.411416275854;PBX1:0.398025309768;ESR1:0.392372927627;SOX17:0.390525236927;PAX5:0.384049813406;SPZ1:0.381910954695;EGR1..3:0.380561325173;TOPORS:0.36822322883;CDC5L:0.355591066284;PAX4:0.353719474421;PAX3,7:0.351894721935;XCPE1{core}:0.34918482185;STAT5{A,B}:0.347883557483;HIC1:0.339162370024;MYB:0.338922562256;RBPJ:0.330802606642;ONECUT1,2:0.323277093343;PAX1,9:0.302326926349;GCM1,2:0.297601280789;TFAP2{A,C}:0.275802182932;ZIC1..3:0.273366677929;PATZ1:0.258778115961;ELK1,4_GABP{A,B1}:0.251268682745;ZNF384:0.248450038372;TFCP2:0.220291828997;PPARG:0.19149471679;NR5A1,2:0.187161389092;GTF2I:0.183719601658;MYOD1:0.18245179346;TGIF1:0.160749814483;IKZF1:0.156429908766;BACH2:0.145929149659;MAZ:0.144832743972;TFAP2B:0.141179028075;IKZF2:0.130421513279;PAX8:0.127241562303;EBF1:0.12577204138;SP1:0.1186560983;NFATC1..3:0.114859576666;MTE{core}:0.111810653844;STAT1,3:0.1114658079;ZFP161:0.109529967711;EVI1:0.107908887885;PITX1..3:0.106291511955;CDX1,2,4:0.0779434576437;NFE2L2:0.0748791035371;NFIX:0.0683738483053;LEF1_TCF7_TCF7L1,2:0.0501810425826;PRDM1:0.0500121038768;TEF:0.0379131964551;FOXL1:0.0372261463241;T:0.030301743224;NR6A1:0.0138231918418;AHR_ARNT_ARNT2:9.01021928773e-06;CREB1:-0.00182750095301;FOS_FOS{B,L1}_JUN{B,D}:-0.00275270505074;TP53:-0.0179424904601;TBX4,5:-0.0309455923405;FOXP1:-0.0451545142795;ZBTB16:-0.0530439121366;HLF:-0.0561380438733;ZNF423:-0.0685297839276;HNF1A:-0.0752791462402;POU6F1:-0.0784849390684;FOSL2:-0.0791986441137;RUNX1..3:-0.0804325100316;NKX2-3_NKX2-5:-0.0818467431186;ATF6:-0.0854278838449;ZBTB6:-0.0879151204949;BREu{core}:-0.0930104717486;AR:-0.0930735183424;FOXD3:-0.0957836548203;ZNF148:-0.0972594044884;PRRX1,2:-0.10371370846;ELF1,2,4:-0.110314248346;POU2F1..3:-0.113532074682;ALX1:-0.139464196229;FOXM1:-0.141548208767;SOX{8,9,10}:-0.145628863407;ADNP_IRX_SIX_ZHX:-0.146518620728;RREB1:-0.147859186575;SOX5:-0.153237149334;HNF4A_NR2F1,2:-0.159265054985;PDX1:-0.160141843195;HBP1_HMGB_SSRP1_UBTF:-0.170015874336;XBP1:-0.171227504685;MYFfamily:-0.175605493736;NKX6-1,2:-0.194899104272;RFX1:-0.205960824633;JUN:-0.207125692977;MTF1:-0.210536425961;MED-1{core}:-0.21074958847;RFX2..5_RFXANK_RFXAP:-0.224033453982;NFKB1_REL_RELA:-0.230655177467;NFE2L1:-0.231892292295;HOXA9_MEIS1:-0.267775807617;STAT2,4,6:-0.27109047069;MAFB:-0.271263564187;PAX2:-0.287924319501;DMAP1_NCOR{1,2}_SMARC:-0.290308140935;SMAD1..7,9:-0.294140290454;CUX2:-0.30658276685;bHLH_family:-0.306952113205;PAX6:-0.312177467018;NFE2:-0.313292143845;NKX3-2:-0.316439559137;SPI1:-0.328295680602;POU5F1:-0.347715295266;CEBPA,B_DDIT3:-0.361045165254;LMO2:-0.36325751431;ESRRA:-0.366773481686;LHX3,4:-0.375700624344;REST:-0.402210602516;IRF7:-0.411534349728;SPIB:-0.413812091744;ATF2:-0.414237274878;OCT4_SOX2{dimer}:-0.42626664088;ATF5_CREB3:-0.435174217891;NFIL3:-0.440896041594;ETS1,2:-0.442173912563;FOXA2:-0.442706243094;HAND1,2:-0.449727569066;IRF1,2:-0.460691196123;HIF1A:-0.478431909876;TLX2:-0.485899957405;HMGA1,2:-0.487675902785;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.48938444394;SOX2:-0.525164501598;FOXP3:-0.53207485619;ATF4:-0.54593693708;CRX:-0.549301929784;SREBF1,2:-0.558062472041;FOXO1,3,4:-0.610491830697;HOX{A6,A7,B6,B7}:-0.649287157748;SNAI1..3:-0.660220204841;HMX1:-0.672252168409;FOXQ1:-0.710072134353;GATA6:-0.734129084682;FOXN1:-0.745270755634;BPTF:-0.746877798709;DBP:-0.773065627095;ARID5B:-0.794776087427;RORA:-0.91722061478;EP300:-0.989180341916;ZEB1:-0.99424068383;NANOG:-0.999251701215;VSX1,2:-1.00245293146;FOX{F1,F2,J1}:-1.11135091366;FOX{D1,D2}:-1.15923521983;FOX{I1,J2}:-1.25600697082 | |top_motifs=TFDP1:1.24972140142;RXR{A,B,G}:1.23007519601;POU3F1..4:1.11693181593;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09942111418;E2F1..5:1.07561739196;GFI1:1.07319685105;EN1,2:1.05602059888;GZF1:0.979460534106;SRF:0.954681442821;TBP:0.908802992284;NR3C1:0.873843674113;HES1:0.842439053052;TFAP4:0.826860022097;GFI1B:0.819053203456;NKX3-1:0.808605800492;HSF1,2:0.770704904381;UFEwm:0.747212977558;NFY{A,B,C}:0.738652676081;ZNF143:0.719802490703;HOX{A5,B5}:0.714201520635;MEF2{A,B,C,D}:0.712381955024;TEAD1:0.700484748311;ALX4:0.694928729954;HOX{A4,D4}:0.667730800138;NKX2-1,4:0.651921944996;AIRE:0.632126613315;TAL1_TCF{3,4,12}:0.608301888108;KLF4:0.596272731639;RXRA_VDR{dimer}:0.518665170908;ZNF238:0.507782217451;NR1H4:0.505382966698;POU1F1:0.502917451016;NKX2-2,8:0.474679358822;MYBL2:0.465949094091;TLX1..3_NFIC{dimer}:0.463098744533;MZF1:0.453777849455;GATA4:0.45321961382;GTF2A1,2:0.44926917677;NHLH1,2:0.447924339623;YY1:0.444316644311;NRF1:0.424591345596;GLI1..3:0.421771692768;NANOG{mouse}:0.411416275854;PBX1:0.398025309768;ESR1:0.392372927627;SOX17:0.390525236927;PAX5:0.384049813406;SPZ1:0.381910954695;EGR1..3:0.380561325173;TOPORS:0.36822322883;CDC5L:0.355591066284;PAX4:0.353719474421;PAX3,7:0.351894721935;XCPE1{core}:0.34918482185;STAT5{A,B}:0.347883557483;HIC1:0.339162370024;MYB:0.338922562256;RBPJ:0.330802606642;ONECUT1,2:0.323277093343;PAX1,9:0.302326926349;GCM1,2:0.297601280789;TFAP2{A,C}:0.275802182932;ZIC1..3:0.273366677929;PATZ1:0.258778115961;ELK1,4_GABP{A,B1}:0.251268682745;ZNF384:0.248450038372;TFCP2:0.220291828997;PPARG:0.19149471679;NR5A1,2:0.187161389092;GTF2I:0.183719601658;MYOD1:0.18245179346;TGIF1:0.160749814483;IKZF1:0.156429908766;BACH2:0.145929149659;MAZ:0.144832743972;TFAP2B:0.141179028075;IKZF2:0.130421513279;PAX8:0.127241562303;EBF1:0.12577204138;SP1:0.1186560983;NFATC1..3:0.114859576666;MTE{core}:0.111810653844;STAT1,3:0.1114658079;ZFP161:0.109529967711;EVI1:0.107908887885;PITX1..3:0.106291511955;CDX1,2,4:0.0779434576437;NFE2L2:0.0748791035371;NFIX:0.0683738483053;LEF1_TCF7_TCF7L1,2:0.0501810425826;PRDM1:0.0500121038768;TEF:0.0379131964551;FOXL1:0.0372261463241;T:0.030301743224;NR6A1:0.0138231918418;AHR_ARNT_ARNT2:9.01021928773e-06;CREB1:-0.00182750095301;FOS_FOS{B,L1}_JUN{B,D}:-0.00275270505074;TP53:-0.0179424904601;TBX4,5:-0.0309455923405;FOXP1:-0.0451545142795;ZBTB16:-0.0530439121366;HLF:-0.0561380438733;ZNF423:-0.0685297839276;HNF1A:-0.0752791462402;POU6F1:-0.0784849390684;FOSL2:-0.0791986441137;RUNX1..3:-0.0804325100316;NKX2-3_NKX2-5:-0.0818467431186;ATF6:-0.0854278838449;ZBTB6:-0.0879151204949;BREu{core}:-0.0930104717486;AR:-0.0930735183424;FOXD3:-0.0957836548203;ZNF148:-0.0972594044884;PRRX1,2:-0.10371370846;ELF1,2,4:-0.110314248346;POU2F1..3:-0.113532074682;ALX1:-0.139464196229;FOXM1:-0.141548208767;SOX{8,9,10}:-0.145628863407;ADNP_IRX_SIX_ZHX:-0.146518620728;RREB1:-0.147859186575;SOX5:-0.153237149334;HNF4A_NR2F1,2:-0.159265054985;PDX1:-0.160141843195;HBP1_HMGB_SSRP1_UBTF:-0.170015874336;XBP1:-0.171227504685;MYFfamily:-0.175605493736;NKX6-1,2:-0.194899104272;RFX1:-0.205960824633;JUN:-0.207125692977;MTF1:-0.210536425961;MED-1{core}:-0.21074958847;RFX2..5_RFXANK_RFXAP:-0.224033453982;NFKB1_REL_RELA:-0.230655177467;NFE2L1:-0.231892292295;HOXA9_MEIS1:-0.267775807617;STAT2,4,6:-0.27109047069;MAFB:-0.271263564187;PAX2:-0.287924319501;DMAP1_NCOR{1,2}_SMARC:-0.290308140935;SMAD1..7,9:-0.294140290454;CUX2:-0.30658276685;bHLH_family:-0.306952113205;PAX6:-0.312177467018;NFE2:-0.313292143845;NKX3-2:-0.316439559137;SPI1:-0.328295680602;POU5F1:-0.347715295266;CEBPA,B_DDIT3:-0.361045165254;LMO2:-0.36325751431;ESRRA:-0.366773481686;LHX3,4:-0.375700624344;REST:-0.402210602516;IRF7:-0.411534349728;SPIB:-0.413812091744;ATF2:-0.414237274878;OCT4_SOX2{dimer}:-0.42626664088;ATF5_CREB3:-0.435174217891;NFIL3:-0.440896041594;ETS1,2:-0.442173912563;FOXA2:-0.442706243094;HAND1,2:-0.449727569066;IRF1,2:-0.460691196123;HIF1A:-0.478431909876;TLX2:-0.485899957405;HMGA1,2:-0.487675902785;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.48938444394;SOX2:-0.525164501598;FOXP3:-0.53207485619;ATF4:-0.54593693708;CRX:-0.549301929784;SREBF1,2:-0.558062472041;FOXO1,3,4:-0.610491830697;HOX{A6,A7,B6,B7}:-0.649287157748;SNAI1..3:-0.660220204841;HMX1:-0.672252168409;FOXQ1:-0.710072134353;GATA6:-0.734129084682;FOXN1:-0.745270755634;BPTF:-0.746877798709;DBP:-0.773065627095;ARID5B:-0.794776087427;RORA:-0.91722061478;EP300:-0.989180341916;ZEB1:-0.99424068383;NANOG:-0.999251701215;VSX1,2:-1.00245293146;FOX{F1,F2,J1}:-1.11135091366;FOX{D1,D2}:-1.15923521983;FOX{I1,J2}:-1.25600697082 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11397-118D2;search_select_hide=table117:FF:11397-118D2 | |||
}} | }} | ||
Latest revision as of 17:57, 4 June 2020
| Name: | Skeletal Muscle Satellite Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12008 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12008
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12008
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.586 |
| 10 | 10 | 0.62 |
| 100 | 100 | 0.82 |
| 101 | 101 | 0.256 |
| 102 | 102 | 0.515 |
| 103 | 103 | 0.216 |
| 104 | 104 | 0.787 |
| 105 | 105 | 0.0658 |
| 106 | 106 | 0.00107 |
| 107 | 107 | 0.52 |
| 108 | 108 | 0.533 |
| 109 | 109 | 0.29 |
| 11 | 11 | 0.585 |
| 110 | 110 | 0.464 |
| 111 | 111 | 0.438 |
| 112 | 112 | 0.0436 |
| 113 | 113 | 0.899 |
| 114 | 114 | 0.0422 |
| 115 | 115 | 0.759 |
| 116 | 116 | 0.468 |
| 117 | 117 | 0.636 |
| 118 | 118 | 0.204 |
| 119 | 119 | 0.319 |
| 12 | 12 | 0.547 |
| 120 | 120 | 0.151 |
| 121 | 121 | 0.489 |
| 122 | 122 | 0.025 |
| 123 | 123 | 0.00306 |
| 124 | 124 | 0.0142 |
| 125 | 125 | 0.519 |
| 126 | 126 | 0.968 |
| 127 | 127 | 0.466 |
| 128 | 128 | 0.0789 |
| 129 | 129 | 0.0681 |
| 13 | 13 | 0.875 |
| 130 | 130 | 0.0528 |
| 131 | 131 | 0.965 |
| 132 | 132 | 0.915 |
| 133 | 133 | 0.749 |
| 134 | 134 | 0.247 |
| 135 | 135 | 0.264 |
| 136 | 136 | 0.643 |
| 137 | 137 | 0.126 |
| 138 | 138 | 0.0662 |
| 139 | 139 | 0.0033 |
| 14 | 14 | 0.286 |
| 140 | 140 | 0.125 |
| 141 | 141 | 0.292 |
| 142 | 142 | 0.948 |
| 143 | 143 | 0.359 |
| 144 | 144 | 0.834 |
| 145 | 145 | 0.68 |
| 146 | 146 | 0.857 |
| 147 | 147 | 0.34 |
| 148 | 148 | 0.17 |
| 149 | 149 | 0.593 |
| 15 | 15 | 0.127 |
| 150 | 150 | 0.833 |
| 151 | 151 | 0.316 |
| 152 | 152 | 0.341 |
| 153 | 153 | 0.38 |
| 154 | 154 | 0.875 |
| 155 | 155 | 0.00638 |
| 156 | 156 | 0.0819 |
| 157 | 157 | 0.0943 |
| 158 | 158 | 0.0275 |
| 159 | 159 | 0.369 |
| 16 | 16 | 0.872 |
| 160 | 160 | 0.558 |
| 161 | 161 | 0.67 |
| 162 | 162 | 0.351 |
| 163 | 163 | 0.704 |
| 164 | 164 | 0.989 |
| 165 | 165 | 0.373 |
| 166 | 166 | 0.928 |
| 167 | 167 | 0.0916 |
| 168 | 168 | 0.29 |
| 169 | 169 | 0.0469 |
| 17 | 17 | 0.338 |
| 18 | 18 | 0.53 |
| 19 | 19 | 0.957 |
| 2 | 2 | 0.807 |
| 20 | 20 | 0.778 |
| 21 | 21 | 0.26 |
| 22 | 22 | 0.715 |
| 23 | 23 | 0.0294 |
| 24 | 24 | 0.663 |
| 25 | 25 | 0.444 |
| 26 | 26 | 0.972 |
| 27 | 27 | 0.368 |
| 28 | 28 | 0.306 |
| 29 | 29 | 0.719 |
| 3 | 3 | 0.361 |
| 30 | 30 | 0.851 |
| 31 | 31 | 0.426 |
| 32 | 32 | 0.0663 |
| 33 | 33 | 0.842 |
| 34 | 34 | 0.754 |
| 35 | 35 | 0.136 |
| 36 | 36 | 0.0446 |
| 37 | 37 | 0.524 |
| 38 | 38 | 0.373 |
| 39 | 39 | 0.656 |
| 4 | 4 | 0.237 |
| 40 | 40 | 0.0793 |
| 41 | 41 | 0.00765 |
| 42 | 42 | 0.405 |
| 43 | 43 | 0.3 |
| 44 | 44 | 0.313 |
| 45 | 45 | 0.153 |
| 46 | 46 | 0.251 |
| 47 | 47 | 0.544 |
| 48 | 48 | 0.755 |
| 49 | 49 | 0.117 |
| 5 | 5 | 0.125 |
| 50 | 50 | 0.479 |
| 51 | 51 | 0.447 |
| 52 | 52 | 0.402 |
| 53 | 53 | 0.131 |
| 54 | 54 | 0.493 |
| 55 | 55 | 0.365 |
| 56 | 56 | 0.66 |
| 57 | 57 | 0.326 |
| 58 | 58 | 0.0856 |
| 59 | 59 | 0.338 |
| 6 | 6 | 0.878 |
| 60 | 60 | 0.0371 |
| 61 | 61 | 0.703 |
| 62 | 62 | 0.077 |
| 63 | 63 | 0.518 |
| 64 | 64 | 0.398 |
| 65 | 65 | 0.254 |
| 66 | 66 | 0.413 |
| 67 | 67 | 0.584 |
| 68 | 68 | 0.472 |
| 69 | 69 | 0.519 |
| 7 | 7 | 0.32 |
| 70 | 70 | 0.00112 |
| 71 | 71 | 0.385 |
| 72 | 72 | 0.171 |
| 73 | 73 | 0.794 |
| 74 | 74 | 0.634 |
| 75 | 75 | 0.351 |
| 76 | 76 | 0.618 |
| 77 | 77 | 0.423 |
| 78 | 78 | 0.289 |
| 79 | 79 | 0.149 |
| 8 | 8 | 0.95 |
| 80 | 80 | 0.0991 |
| 81 | 81 | 0.542 |
| 82 | 82 | 0.00968 |
| 83 | 83 | 0.49 |
| 84 | 84 | 0.787 |
| 85 | 85 | 0.00462 |
| 86 | 86 | 0.305 |
| 87 | 87 | 0.352 |
| 88 | 88 | 0.951 |
| 89 | 89 | 0.261 |
| 9 | 9 | 0.881 |
| 90 | 90 | 0.276 |
| 91 | 91 | 0.324 |
| 92 | 92 | 0.113 |
| 93 | 93 | 0.892 |
| 94 | 94 | 0.167 |
| 95 | 95 | 0.879 |
| 96 | 96 | 0.27 |
| 97 | 97 | 0.596 |
| 98 | 98 | 0.0982 |
| 99 | 99 | 0.0077 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12008
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000165 human skeletal muscle satellite cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000035 (single fate stem cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
0000034 (stem cell)
0000594 (skeletal muscle satellite cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000165 (human skeletal muscle satellite cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
