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{{f5samples
{{f5samples
|id=FF:11461-119B3
|DRA_sample_Accession=CAGE@SAMD00005825
|name=Bronchial Epithelial Cell, donor6
|accession_numbers=CAGE;DRX008124;DRR008996;DRZ000421;DRZ001806;DRZ011771;DRZ013156
|sample_id=11461
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0009569,UBERON:0005178,UBERON:0000485,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0004815,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002031,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|rna_tube_id=119B3
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0002328
|rna_box=119
|rna_position=B3
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1217
|rna_catalog_number=CA502-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=45 years old adult
|sample_tissue=lung
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=45
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=epithelial cell of lung, bronchial
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs12062,LSID838,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000082,CL:0000144,CL:0000220,CL:0000223,CL:0000255,CL:0000548,CL:0002076,CL:0002202,CL:0002321,CL:0002328,CL:0002368,CL:0002371,CL:0002632
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000115,UBERON:0000118,UBERON:0000119,UBERON:0000170,UBERON:0000171,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000485,UBERON:0000490,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001558,UBERON:0002031,UBERON:0002048,UBERON:0002050,UBERON:0002185,UBERON:0002224,UBERON:0002532,UBERON:0003104,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004802,UBERON:0004807,UBERON:0004815,UBERON:0004921,UBERON:0005153,UBERON:0005178,UBERON:0005181,UBERON:0005423,UBERON:0005597,UBERON:0005911,UBERON:0007026,UBERON:0007196,UBERON:0008947,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000015
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.34!218.89!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.13!149.01!IRF6;;chr11:34642612..34642646,+!p1@EHF!1.93!84.67!EHF;;chr1:6479968..6479986,-!p1@HES2!1.84!68.77!HES2;;chr5:134369905..134369972,-!p1@PITX1!1.80!92.81!PITX1;;chr1:209979411..209979433,-!p2@IRF6!1.76!56.94!IRF6;;chr15:83953397..83953425,-!p1@BNC1!1.75!62.49!BNC1;;chr6:10415276..10415341,-!p2@TFAP2A!1.66!54.72!TFAP2A;;chr6:34524093..34524135,-!p1@SPDEF!1.62!40.67!SPDEF;;chr17:7492684..7492778,-!p2@SOX15!1.60!79.13!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.58!56.57!ZNF385A;;chr3:189507432..189507459,+!p1@TP63!1.57!35.87!TP63;;chr6:10412600..10412637,-!p1@TFAP2A!1.54!55.46!TFAP2A;;chr12:54785054..54785072,-!p4@ZNF385A!1.53!36.98!ZNF385A;;chr2:46524897..46524911,+!p2@EPAS1!1.50!82.82!EPAS1;;chr5:134369879..134369898,-!p2@PITX1!1.44!26.62!PITX1;;chr13:73633131..73633149,+!p1@KLF5!1.42!256.98!KLF5;;chr8:10588010..10588030,-!p1@SOX7!1.42!25.51!SOX7;;chr20:22565185..22565223,-!p3@FOXA2!1.42!25.14!FOXA2;;chr20:22565370..22565388,-!p2@FOXA2!1.32!19.97!FOXA2;;chr22:19748231..19748317,+!p1@TBX1!1.31!19.60!TBX1;;chr6:34524049..34524089,-!p2@SPDEF!1.31!19.60!SPDEF;;chr17:80797886..80797906,-!p1@ZNF750!1.31!19.23!ZNF750;;chr3:111314186..111314204,-!p1@ZBED2!1.28!18.12!ZBED2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.24!141.62!PPP1R13L;;chr5:2751762..2751784,-!p1@IRX2!1.24!16.27!IRX2;;chr14:37131058..37131139,+!p1@PAX9!1.23!15.90!PAX9;;chr6:10415484..10415508,-!p3@TFAP2A!1.19!14.42!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!1.19!14.42!SPDEF;;chr14:38064429..38064486,-!p1@FOXA1!1.16!13.31!FOXA1;;chr1:24645832..24645853,+!p1@GRHL3!1.16!13.31!GRHL3;;chr14:90085820..90085840,-!p6@FOXN3!1.12!12.20!FOXN3;;chr20:22564895..22564910,-!p1@FOXA2!1.11!11.83!FOXA2;;chr17:8027418..8027432,-!p1@HES7!1.10!11.46!HES7;;chr6:106546808..106546833,+!p3@PRDM1!1.07!13.68!PRDM1;;chr15:101069113..101069169,-!p1@CERS3!1.07!10.72!CERS3;;chr6:1312325..1312340,+!p1@FOXQ1!1.01!15.16!FOXQ1;;chr6:10412576..10412599,-!p5@TFAP2A!1.01!9.24!TFAP2A;;chr11:34642656..34642667,+!p2@EHF!1.01!9.24!EHF;;chr14:37051798..37051831,-!p1@NKX2-8!0.99!8.87!NKX2-8;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.29!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!0.98!8.50!OTX1;;chr1:24645921..24645973,+!p2@GRHL3!0.98!8.50!GRHL3;;chr1:154975258..154975330,+!p1@ZBTB7B!0.97!31.80!ZBTB7B;;chr2:122042770..122042785,-!p1@TFCP2L1!0.96!8.13!TFCP2L1;;chr4:57547454..57547469,-!p1@HOPX!0.94!7.76!HOPX;;chr8:49833948..49833973,-!p2@SNAI2!0.89!45.48!SNAI2;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.35!ETV4;;chr2:70142232..70142251,+!p1@MXD1!0.88!39.19!MXD1;;chr17:46132044..46132080,+!p4@NFE2L1!0.88!6.66!NFE2L1;;chr8:102504651..102504683,+!p1@GRHL2!0.88!6.66!GRHL2;;chr17:41623009..41623053,-!p4@ETV4!0.87!10.72!ETV4;;chr21:36260773..36260804,-!p7@RUNX1!0.87!8.87!RUNX1;;chr2:46524878..46524891,+!p3@EPAS1!0.86!11.46!EPAS1;;chr3:189507460..189507471,+!p3@TP63!0.86!6.29!TP63;;chr1:209979375..209979386,-!p4@IRF6!0.86!6.29!IRF6;;chr1:209979449..209979460,-!p3@IRF6!0.86!6.29!IRF6;;chr11:65554528..65554546,+!p1@OVOL1!0.86!6.29!OVOL1;;chr6:34204672..34204692,+!p1@HMGA1!0.85!732.85!HMGA1;;chr11:120107344..120107351,+!p1@POU2F3!0.85!7.40!POU2F3;;chr1:154975229..154975247,+!p6@ZBTB7B!0.84!5.92!ZBTB7B;;chr1:50889155..50889173,-!p2@DMRTA2!0.82!5.55!DMRTA2;;chr5:2751785..2751808,-!p2@IRX2!0.82!5.55!IRX2;;chr12:66218598..66218645,+!p2@HMGA2!0.81!26.99!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.81!18.49!TWIST2;;chr19:42636586..42636607,-!p1@POU2F2!0.81!15.90!POU2F2;;chr8:128748308..128748324,+!p2@MYC!0.80!160.84!MYC;;chr12:27485762..27485776,+!p3@ARNTL2!0.80!15.16!ARNTL2;;chr6:10413188..10413249,-!p7@TFAP2A!0.79!5.18!TFAP2A;;chr3:111314230..111314241,-!p2@ZBED2!0.79!5.18!ZBED2;;chr17:45928443..45928473,-!p2@SP6!0.79!5.18!SP6;;chr1:37940170..37940190,+!p1@ZC3H12A!0.77!66.19!ZC3H12A;;chr2:239148671..239148686,-!p1@HES6!0.77!19.23!HES6;;chr12:53625966..53626012,-!p2@RARG!0.76!13.68!RARG;;chr11:34645791..34645836,+!p3@EHF!0.76!4.81!EHF;;chr6:106546731..106546755,+!p5@PRDM1!0.76!4.81!PRDM1;;chr20:18038521..18038571,-!p1@OVOL2!0.76!4.81!OVOL2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.75!364.95!TAX1BP3;;chr11:65667846..65667868,-!p1@FOSL1!0.75!135.33!FOSL1;;chrX:107018969..107019024,-!p6@TSC22D3!0.75!6.66!TSC22D3;;chr17:41623075..41623101,-!p9@ETV4!0.75!5.55!ETV4;;chr6:34204921..34204939,+!p3@HMGA1!0.74!152.34!HMGA1;;chr12:48298765..48298783,-!p2@VDR!0.74!9.98!VDR;;chr1:24646263..24646277,+!p4@GRHL3!0.74!4.44!GRHL3;;chr6:10419768..10419819,-!p6@TFAP2A!0.74!4.44!TFAP2A;;chr13:73636252..73636307,+!p2@KLF5!0.73!5.18!KLF5;;chr17:41623692..41623715,-!p1@ETV4!0.72!20.34!ETV4;;chr2:239756739..239756755,+!p2@TWIST2!0.72!7.76!TWIST2;;chr8:49833978..49833996,-!p1@SNAI2!0.71!97.25!SNAI2;;chr14:21566731..21566836,-!p1@ZNF219!0.71!49.92!ZNF219;;chr12:66218003..66218018,+!p9@HMGA2!0.71!5.18!HMGA2;;chr17:41622834..41622883,-!p6@ETV4!0.71!5.18!ETV4;;chr11:64073022..64073056,+!p1@ESRRA!0.70!53.98!ESRRA;;chr12:66218836..66218888,+!p1@HMGA2!0.70!42.89!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!0.70!7.40!DRAP1;;chr11:129245526..129245553,+!p1@BARX2!0.70!4.07!BARX2;;chr2:63277978..63277995,+!p2@OTX1!0.70!4.07!OTX1;;chr3:189507523..189507535,+!p5@TP63!0.70!4.07!TP63;;chr4:299227..299272,-!p1@ZNF732!0.70!4.07!ZNF732;;chr5:134369973..134369984,-!p3@PITX1!0.70!4.07!PITX1;;chr5:50679228..50679288,+!p1@ISL1!0.70!4.07!ISL1;;chr22:42229246..42229270,+!p2@SREBF2!0.69!56.20!SREBF2;;chr12:77459306..77459365,-!p1@E2F7!0.69!55.46!E2F7;;chr19:45579725..45579743,-!p1@ZNF296!0.69!19.60!ZNF296;;chr12:66218378..66218401,+!p6@HMGA2!0.68!6.29!HMGA2;;chr3:32023232..32023273,+!p1@ZNF860!0.67!5.55!ZNF860;;chr20:55204351..55204377,+!p1@TFAP2C!0.67!4.81!TFAP2C;;chr1:50889103..50889145,-!p1@DMRTA2!0.67!3.70!DMRTA2;;chr17:26833339..26833378,+!p1@FOXN1!0.67!3.70!FOXN1;;chr18:3447536..3447542,+!p23@TGIF1!0.67!3.70!TGIF1;;chr2:45236540..45236577,-!p1@SIX2!0.67!3.70!SIX2;;chr5:134369848..134369853,-!p6@PITX1!0.67!3.70!PITX1;;chr6:34204642..34204664,+!p2@HMGA1!0.66!560.92!HMGA1;;chr5:72744594..72744609,-!p1@FOXD1!0.66!18.86!FOXD1;;chr11:65687362..65687436,+!p3@DRAP1!0.66!18.49!DRAP1;;chr1:8934931..8934947,-!p4@ENO1!0.65!12.94!ENO1;;chr1:10856694..10856715,-!p3@CASZ1!0.64!3.33!CASZ1;;chr5:3595977..3595999,+!p1@IRX1!0.64!3.33!IRX1;;chr22:24093154..24093183,-!p2@ZNF70!0.64!3.33!ZNF70;;chr2:169312600..169312606,+!p2@CERS6!0.63!5.55!CERS6;;chr1:8938709..8938720,-!p3@ENO1!0.62!185.99!ENO1;;chr11:47236584..47236679,+!p1@DDB2!0.62!41.04!DDB2;;chr5:137804484..137804498,+!p2@EGR1!0.62!14.79!EGR1;;chr17:41622765..41622821,-!p2@ETV4!0.62!5.18!ETV4;;chr18:3448455..3448480,+!p5@TGIF1!0.61!6.29!TGIF1;;chr19:58987711..58987729,+!p2@ZNF446!0.61!5.18!ZNF446;;chr16:54964740..54964789,+!p1@IRX5!0.61!4.81!IRX5;;chr18:3450161..3450183,+!p1@TGIF1!0.60!124.98!TGIF1;;chr10:104155480..104155534,+!p2@NFKB2!0.60!22.92!NFKB2;;chr11:65687158..65687216,+!p4@DRAP1!0.60!20.34!DRAP1;;chr18:19749517..19749531,+!p3@GATA6!0.60!5.92!GATA6;;chr2:60778035..60778060,-!p4@BCL11A!0.60!3.70!BCL11A;;chr15:83953373..83953386,-!p2@BNC1!0.60!2.96!BNC1;;chr17:7492504..7492520,-!p3@SOX15!0.60!2.96!SOX15;;chr1:10856639..10856662,-!p2@CASZ1!0.60!2.96!CASZ1;;chr1:201979743..201979762,+!p1@ELF3!0.60!2.96!ELF3;;chr1:24646002..24646013,+!p3@GRHL3!0.60!2.96!GRHL3;;chr5:3595934..3595957,+!p2@IRX1!0.60!2.96!IRX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.60!2.96!TFAP2A;;chr7:97840743..97840786,+!p1@BHLHA15!0.60!2.96!BHLHA15;;chr8:48650715..48650735,-!p1@CEBPD!0.59!455.17!CEBPD;;chr2:10091815..10091864,+!p1@GRHL1!0.59!4.07!GRHL1;;chr2:46602879..46602899,+!p8@EPAS1!0.59!3.70!EPAS1;;chr11:65686952..65686975,+!p5@DRAP1!0.58!18.49!DRAP1;;chr14:69262789..69262822,-!p2@ZFP36L1!0.58!8.50!ZFP36L1;;chr22:29196492..29196503,-!p3@XBP1!0.58!4.81!XBP1;;chr20:50721803..50721857,-!p2@ZFP64!0.58!4.81!ZFP64;;chr12:27485785..27485816,+!p1@ARNTL2!0.57!22.92!ARNTL2;;chr12:66218443..66218461,+!p8@HMGA2!0.57!3.70!HMGA2;;chrX:106960285..106960299,-!p1@TSC22D3!0.56!88.00!TSC22D3;;chr17:17740287..17740307,-!p1@SREBF1!0.56!86.15!SREBF1;;chr11:65686732..65686756,+!p2@DRAP1!0.56!13.31!DRAP1;;chr1:153939955..153940009,+!p2@CREB3L4!0.56!7.03!CREB3L4;;chr22:42229210..42229229,+!p3@SREBF2!0.55!7.03!SREBF2;;chr17:17723626..17723663,-!p4@SREBF1!0.55!5.92!SREBF1;;chr8:128747757..128747800,+!p7@MYC!0.55!3.70!MYC;;chr6:10419824..10419840,-!p9@TFAP2A!0.55!2.59!TFAP2A;;chr2:113994526..113994556,-!p3@PAX8!0.55!2.59!PAX8;;chr19:42636625..42636632,-!p2@POU2F2!0.55!2.59!POU2F2;;chr1:10856665..10856683,-!p4@CASZ1!0.55!2.59!CASZ1;;chr12:10870927..10870966,-!p5@CSDA!0.55!2.59!CSDA;;chr3:101568349..101568365,+!p1@NFKBIZ!0.54!163.06!NFKBIZ;;chr18:47807845..47807918,-!p1@MBD1!0.54!55.09!MBD1;;chr7:148892653..148892729,+!p1@ZNF282!0.54!45.85!ZNF282;;chr10:104155455..104155479,+!p1@NFKB2!0.54!45.48!NFKB2;;chr16:3185125..3185173,+!p1@ZNF213!0.54!7.40!ZNF213;;chr22:42269885..42269899,+!p4@SREBF2!0.54!4.07!SREBF2;;chrX:56258844..56258882,+!p1@KLF8!0.54!3.70!KLF8;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.54!3.33!PRDM11;;chr6:10412392..10412409,-!p4@TFAP2A!0.54!2.96!TFAP2A;;chr12:57914286..57914304,-!p1@DDIT3!0.53!112.77!DDIT3;;chr12:27485823..27485868,+!p2@ARNTL2!0.53!11.83!ARNTL2;;chr19:8942962..8942987,-!p1@ZNF558!0.53!7.76!ZNF558;;chrX:48900782..48900793,-!p3@TFE3!0.53!5.18!TFE3;;chr19:17356189..17356221,-!p2@NR2F6!0.53!4.44!NR2F6;;chr1:23694556..23694584,-!p6@ZNF436!0.53!3.33!ZNF436;;chr8:128748470..128748487,+!p1@MYC!0.52!330.56!MYC;;chr2:85198369..85198483,+!p2@KCMF1!0.52!35.13!KCMF1;;chr16:88519669..88519726,+!p1@ZFPM1!0.52!26.99!ZFPM1;;chr11:46722560..46722595,+!p1@ZNF408!0.52!15.53!ZNF408;;chr16:2059797..2059837,-!p1@ZNF598!0.52!11.83!ZNF598;;chr16:2059754..2059777,-!p2@ZNF598!0.52!9.98!ZNF598;;chr12:66218183..66218209,+!p4@HMGA2!0.52!5.18!HMGA2;;chr19:19303731..19303783,+!p1@RFXANK!0.51!68.40!RFXANK;;chr9:35732592..35732640,+!p1@CREB3!0.51!38.82!CREB3;;chr19:4065485..4065546,-!p2@ZBTB7A!0.51!25.88!ZBTB7A;;chr11:64072981..64073005,+!p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XP4;;chr8:80680078..80680101,-!p3@HEY1!0.20!0.74!HEY1;;chr14:64971346..64971357,-!p9@ZBTB25!0.20!0.74!ZBTB25;;chr2:178129414..178129517,-!p1@NFE2L2!0.19!55.83!NFE2L2;;chr19:45251943..45252006,+!p1@BCL3!0.19!36.24!BCL3;;chr6:32157947..32157992,-!p1@PBX2!0.19!23.29!PBX2;;chr7:137686824..137686865,-!p2@CREB3L2!0.19!17.01!CREB3L2;;chr19:42724436..42724507,+!p1@ZNF526!0.19!11.09!ZNF526;;chr16:4322832..4322907,-!p1@TFAP4!0.19!9.98!TFAP4;;chr17:17740330..17740349,-!p3@SREBF1!0.19!8.50!SREBF1;;chr6:43138999..43139017,+!p2@SRF!0.19!7.76!SRF;;chr12:57400261..57400344,-!p1@ZBTB39!0.19!5.92!ZBTB39;;chr6:20403916..20403965,+!p3@E2F3!0.19!5.55!E2F3;;chr2:27357446..27357475,-!p2@PREB!0.19!4.07!PREB;;chr7:148787768..148787825,-!p1@ZNF786!0.19!3.70!ZNF786;;chrX:106959661..106959763,-!p4@TSC22D3!0.19!3.33!TSC22D3;;chr19:52674696..52674758,-!p1@ZNF836!0.19!3.33!ZNF836;;chr1:61547894..61547968,+!p2@NFIA!0.19!3.33!NFIA;;chr13:45011349..45011391,-!p4@TSC22D1!0.19!2.59!TSC22D1;;chr10:44144264..44144286,-!p2@ZNF32!0.19!2.22!ZNF32;;chr14:61191018..61191048,-!p1@SIX4!0.19!2.22!SIX4;;chr19:44331555..44331581,+!p2@ZNF283!0.19!2.22!ZNF283;;chr14:74353454..74353469,+!p4@ZNF410!0.19!1.85!ZNF410;;chr11:130184644..130184662,-!p5@ZBTB44!0.19!1.48!ZBTB44;;chr9:35732312..35732324,+!p4@CREB3!0.19!1.48!CREB3;;chr9:14082760..14082775,-!p6@NFIB!0.19!1.48!NFIB;;chr15:31619871..31619884,+!p8@KLF13!0.19!1.48!KLF13;;chr16:30418894..30418909,+!p2@ZNF771!0.19!1.48!ZNF771;;chr16:30546275..30546297,-!p2@ZNF747!0.19!1.11!ZNF747;;chr3:126076264..126076305,-!p2@KLF15!0.19!1.11!KLF15;;chr8:128750983..128751021,+!p11@MYC!0.19!1.11!MYC;;chr1:120190761..120190782,-!p2@ZNF697!0.19!1.11!ZNF697;;chr19:59030961..59030974,-!p4@ZBTB45!0.19!0.74!ZBTB45;;chr20:44600785..44600794,-!p7@ZNF335!0.19!0.74!ZNF335;;chr2:27805971..27805981,+!p3@ZNF512!0.19!0.74!ZNF512;;chr14:61116168..61116180,-!p2@SIX1!0.19!0.74!SIX1;;chr17:17726892..17726903,-!p6@SREBF1!0.19!0.74!SREBF1;;chr19:19303794..19303805,+!p5@RFXANK!0.19!0.74!RFXANK;;chr8:80680024..80680046,-!p2@HEY1!0.19!0.74!HEY1;;chr16:89940012..89940059,+!p1@TCF25!0.18!117.21!TCF25;;chr19:1652575..1652621,-!p1@TCF3!0.18!52.51!TCF3;;chr11:128392085..128392232,-!p1@ETS1!0.18!45.48!ETS1;;chr18:51750948..51751059,-!p1@MBD2!0.18!43.26!MBD2;;chr19:11071685..11071798,+!p1@SMARCA4!0.18!38.45!SMARCA4;;chr19:56152361..56152434,+!p1@ZNF580!0.18!36.24!ZNF580;;chr1:16302565..16302605,-!p1@ZBTB17!0.18!23.66!ZBTB17;;chr3:52001448..52001478,-!p2@PCBP4!0.18!18.49!PCBP4;;chr22:30162924..30163005,-!p1@ZMAT5!0.18!16.27!ZMAT5;;chr6:7107939..7107993,+!p1@RREB1!0.18!15.53!RREB1;;chr19:57702846..57702891,+!p1@ZNF264!0.18!13.31!ZNF264;;chr11:13299319..13299424,+!p1@ARNTL!0.18!13.31!ARNTL;;chr12:8185288..8185339,+!p1@FOXJ2!0.18!13.31!FOXJ2;;chr6:44233252..44233296,-!p1@NFKBIE!0.18!12.94!NFKBIE;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.18!12.57!ZNF576;;chr19:58662139..58662182,-!p1@ZNF329!0.18!5.92!ZNF329;;chr7:150076406..150076456,+!p1@ZNF775!0.18!5.55!ZNF775;;chr16:73092898..73092931,-!p1@ZFHX3!0.18!4.44!ZFHX3;;chr12:53848505..53848532,+!p4@PCBP2!0.18!2.22!PCBP2;;chr19:50879683..50879695,+!p2@NR1H2!0.18!2.22!NR1H2;;chr2:121493425..121493474,+!p1@GLI2!0.18!2.22!GLI2;;chr6:42419043..42419087,-!p2@TRERF1!0.18!1.85!TRERF1;;chr19:6280007..6280019,-!p3@MLLT1!0.18!1.85!MLLT1;;chr4:38665753..38665757,+!p7@KLF3!0.18!1.48!KLF3;;chr13:45151509..45151539,-!p6@TSC22D1!0.18!1.48!TSC22D1;;chr7:148844581..148844606,+!p2@ZNF398!0.18!1.48!ZNF398;;chr1:151431674..151431685,-!p4@POGZ!0.18!1.11!POGZ;;chr1:42800614..42800649,-!p5@FOXJ3!0.18!1.11!FOXJ3;;chrX:131623932..131623964,-!p7@MBNL3!0.18!1.11!MBNL3;;chrX:107019163..107019179,-!p7@TSC22D3!0.18!0.74!TSC22D3;;chr6:32158004..32158015,-!p2@PBX2!0.18!0.74!PBX2;;chr7:148844498..148844507,+!p6@ZNF398!0.18!0.74!ZNF398;;chr7:99156011..99156036,+!p7@ZNF655!0.18!0.74!ZNF655;;chr7:99679311..99679322,-!p3@ZNF3!0.18!0.74!ZNF3;;chr3:169381420..169381535,-!p1@MECOM!0.18!0.74!MECOM;;chr18:3447572..3447603,+!p17@TGIF1!0.18!0.74!TGIF1;;chr18:56530595..56530606,+!p11@ZNF532!0.18!0.74!ZNF532;;chr5:149380256..149380343,+!p1@HMGXB3!0.17!39.19!HMGXB3;;chr19:39390587..39390646,+!p1@NFKBIB!0.17!20.71!NFKBIB;;chr1:6685228..6685270,+!p1@THAP3!0.17!8.87!THAP3;;chr2:42795839..42795887,+!p2@MTA3!0.17!8.50!MTA3;;chr3:40518599..40518664,+!p1@ZNF619!0.17!7.03!ZNF619;;chr14:74226747..74226779,-!p3@C14orf43!0.17!6.66!C14orf43;;chr14:74226783..74226819,-!p4@C14orf43!0.17!5.92!C14orf43;;chr2:66662249..66662267,+!p2@MEIS1!0.17!4.44!MEIS1;;chr2:208030488..208030551,-!p3@KLF7!0.17!4.07!KLF7;;chr7:17338324..17338341,+!p3@AHR!0.17!3.70!AHR;;chr14:64971288..64971316,-!p2@ZBTB25!0.17!3.33!ZBTB25;;chr21:36259445..36259519,-!p4@RUNX1!0.17!2.96!RUNX1;;chr4:1873155..1873185,+!p3@WHSC1!0.17!2.96!WHSC1;;chr2:74229812..74229867,+!p1@TET3!0.17!2.59!TET3;;chr14:35872962..35873025,-!p3@NFKBIA!0.17!2.59!NFKBIA;;chr16:8962544..8962584,-!p2@CARHSP1!0.17!2.22!CARHSP1;;chr19:17356436..17356481,-!p3@NR2F6!0.17!1.48!NR2F6;;chr12:3068501..3068515,+!p4@TEAD4!0.17!1.48!TEAD4;;c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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000082;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002328;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000485;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002185;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
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|rna_box=119
|rna_catalog_number=CA502-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1217
|rna_od260/230=
|rna_od260/280=
|rna_position=B3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=119B3
|rna_weight_ug=10
|sample_age=45
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=epithelial cell of lung, bronchial
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=45 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.10540361984857e-226!GO:0005737;cytoplasm;1.84386855527039e-200!GO:0043226;organelle;1.35249958381922e-173!GO:0043229;intracellular organelle;3.47200399541534e-173!GO:0043231;intracellular membrane-bound organelle;2.59364587179901e-163!GO:0043227;membrane-bound organelle;4.07615130686642e-163!GO:0044444;cytoplasmic part;5.56850658488592e-137!GO:0044422;organelle part;4.61203082395186e-128!GO:0044446;intracellular organelle part;1.10270555692096e-126!GO:0044237;cellular metabolic process;2.4004930368287e-85!GO:0032991;macromolecular complex;1.30939533455342e-84!GO:0044238;primary metabolic process;3.33459325315348e-84!GO:0030529;ribonucleoprotein complex;1.67340298663684e-79!GO:0005739;mitochondrion;2.62442825157182e-73!GO:0043170;macromolecule metabolic process;2.16357755942866e-72!GO:0005515;protein binding;1.97820604814291e-66!GO:0043233;organelle lumen;3.30903962542222e-63!GO:0031974;membrane-enclosed lumen;3.30903962542222e-63!GO:0019538;protein metabolic process;7.28731932163433e-55!GO:0044428;nuclear part;1.82844502908861e-54!GO:0003723;RNA binding;2.23538741212912e-54!GO:0005840;ribosome;4.10245088760957e-54!GO:0006412;translation;1.70030399766964e-53!GO:0031090;organelle membrane;1.42047930689896e-52!GO:0005634;nucleus;2.53548113165419e-51!GO:0009058;biosynthetic process;6.43580973851527e-51!GO:0003735;structural constituent of ribosome;1.88651128253009e-48!GO:0044267;cellular protein metabolic process;1.88651128253009e-48!GO:0044260;cellular macromolecule metabolic process;2.62773519810305e-48!GO:0044429;mitochondrial part;3.02238838183971e-48!GO:0044249;cellular biosynthetic process;1.75225050437115e-47!GO:0015031;protein transport;8.60001728222119e-45!GO:0033036;macromolecule localization;2.61590804137395e-43!GO:0009059;macromolecule biosynthetic process;3.28460940020441e-43!GO:0005829;cytosol;3.77143417136963e-42!GO:0043234;protein complex;1.56956420171817e-41!GO:0045184;establishment of protein localization;3.60084580234807e-41!GO:0033279;ribosomal subunit;4.65268856584855e-41!GO:0008104;protein localization;4.7565839404473e-41!GO:0006396;RNA processing;6.25309974619646e-41!GO:0016043;cellular component organization and biogenesis;3.76413132418836e-40!GO:0031967;organelle envelope;1.05262673325078e-39!GO:0031975;envelope;2.51791237687077e-39!GO:0043283;biopolymer metabolic process;1.24937130226957e-35!GO:0031981;nuclear lumen;8.8182494502688e-35!GO:0046907;intracellular transport;5.79517011542752e-33!GO:0010467;gene expression;6.00114132444834e-32!GO:0065003;macromolecular complex assembly;7.78515915561341e-32!GO:0043228;non-membrane-bound organelle;7.25014373458025e-31!GO:0043232;intracellular non-membrane-bound organelle;7.25014373458025e-31!GO:0005740;mitochondrial envelope;1.01115677431957e-30!GO:0006886;intracellular protein transport;2.13484082977123e-30!GO:0016071;mRNA metabolic process;1.97919155751935e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.06379548224168e-29!GO:0031966;mitochondrial membrane;1.33878095496039e-28!GO:0022607;cellular component assembly;8.43398684340501e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.47259136178002e-27!GO:0019866;organelle inner membrane;9.21177427330094e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.52412177142982e-26!GO:0008380;RNA splicing;5.18430726572837e-26!GO:0006996;organelle organization and biogenesis;1.74639976540217e-25!GO:0005743;mitochondrial inner membrane;1.96949666459954e-25!GO:0006397;mRNA processing;4.61970575955393e-25!GO:0044445;cytosolic part;1.50451289352884e-22!GO:0031980;mitochondrial lumen;1.03612975626197e-21!GO:0005759;mitochondrial matrix;1.03612975626197e-21!GO:0015934;large ribosomal subunit;1.67648952281582e-21!GO:0012505;endomembrane system;4.12733554158204e-21!GO:0051649;establishment of cellular localization;6.74040953507183e-21!GO:0051641;cellular localization;9.18907407904739e-21!GO:0006119;oxidative phosphorylation;1.05151452841174e-20!GO:0015935;small ribosomal subunit;1.24676830562334e-20!GO:0016874;ligase activity;2.0723392913506e-20!GO:0005654;nucleoplasm;2.33442240817757e-20!GO:0005681;spliceosome;8.77510992932161e-20!GO:0005783;endoplasmic reticulum;2.09385654164754e-19!GO:0044455;mitochondrial membrane part;3.17650443285822e-19!GO:0051186;cofactor metabolic process;5.79682972792688e-19!GO:0006457;protein folding;7.39648551334508e-19!GO:0006259;DNA metabolic process;8.06902230002362e-18!GO:0000166;nucleotide binding;3.79465004132332e-17!GO:0044432;endoplasmic reticulum part;7.45045590912405e-17!GO:0044451;nucleoplasm part;7.45045590912405e-17!GO:0048770;pigment granule;7.96287698239431e-17!GO:0042470;melanosome;7.96287698239431e-17!GO:0044265;cellular macromolecule catabolic process;1.40167921870416e-16!GO:0006512;ubiquitin cycle;1.42010494427263e-16!GO:0005730;nucleolus;2.10394687835343e-16!GO:0016462;pyrophosphatase activity;4.86031363618439e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.14871886201202e-16!GO:0006732;coenzyme metabolic process;5.82658398722009e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;6.10170420290212e-16!GO:0044248;cellular catabolic process;7.34204527332571e-16!GO:0006605;protein targeting;7.72371913886489e-16!GO:0043285;biopolymer catabolic process;8.02630203587534e-16!GO:0022618;protein-RNA complex assembly;9.81600082527142e-16!GO:0009057;macromolecule catabolic process;1.65398393134302e-15!GO:0005794;Golgi apparatus;1.69936910275283e-15!GO:0005746;mitochondrial respiratory chain;3.25981605904252e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.40820685205142e-15!GO:0005761;mitochondrial ribosome;3.40820685205142e-15!GO:0000313;organellar ribosome;3.40820685205142e-15!GO:0017111;nucleoside-triphosphatase activity;3.6134095178909e-15!GO:0043412;biopolymer modification;5.07753127139224e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;7.5337854436894e-15!GO:0019941;modification-dependent protein catabolic process;9.25250685607683e-15!GO:0043632;modification-dependent macromolecule catabolic process;9.25250685607683e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.20717791534436e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.20717791534436e-14!GO:0044257;cellular protein catabolic process;1.52539883401267e-14!GO:0008134;transcription factor binding;2.10985350870252e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.1611995841784e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.68068132110897e-14!GO:0051082;unfolded protein binding;7.09545027145029e-14!GO:0006464;protein modification process;8.43152357570835e-14!GO:0008135;translation factor activity, nucleic acid binding;1.15447044173242e-13!GO:0048193;Golgi vesicle transport;1.31485982329722e-13!GO:0030163;protein catabolic process;1.88745566808131e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.91092428456178e-13!GO:0003954;NADH dehydrogenase activity;1.91092428456178e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.91092428456178e-13!GO:0012501;programmed cell death;2.57916174837979e-13!GO:0009055;electron carrier activity;3.98163185619335e-13!GO:0006915;apoptosis;4.28139234905214e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.28139234905214e-13!GO:0005789;endoplasmic reticulum membrane;7.47645688520618e-13!GO:0003676;nucleic acid binding;2.85445581614304e-12!GO:0017076;purine nucleotide binding;3.48919849455566e-12!GO:0007049;cell cycle;3.48919849455566e-12!GO:0016192;vesicle-mediated transport;5.75765095896977e-12!GO:0006399;tRNA metabolic process;6.03696203315588e-12!GO:0042775;organelle ATP synthesis coupled electron transport;7.33634131264902e-12!GO:0042773;ATP synthesis coupled electron transport;7.33634131264902e-12!GO:0042254;ribosome biogenesis and assembly;7.39689659560621e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.58259600107028e-12!GO:0032553;ribonucleotide binding;7.83068525264723e-12!GO:0032555;purine ribonucleotide binding;7.83068525264723e-12!GO:0043687;post-translational protein modification;1.08520600156602e-11!GO:0016070;RNA metabolic process;1.11380025440897e-11!GO:0008219;cell death;1.24895106535046e-11!GO:0016265;death;1.24895106535046e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.26413586131063e-11!GO:0045271;respiratory chain complex I;1.26413586131063e-11!GO:0005747;mitochondrial respiratory chain complex I;1.26413586131063e-11!GO:0006461;protein complex assembly;2.78213128030846e-11!GO:0051188;cofactor biosynthetic process;3.02219655303866e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.33597756578203e-11!GO:0008565;protein transporter activity;5.73634781611087e-11!GO:0009056;catabolic process;7.1346084286522e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;8.50375753784556e-11!GO:0000375;RNA splicing, via transesterification reactions;8.50375753784556e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.50375753784556e-11!GO:0003743;translation initiation factor activity;8.73322825464734e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.5556276139104e-10!GO:0006413;translational initiation;1.85600373598311e-10!GO:0006913;nucleocytoplasmic transport;1.91833616621183e-10!GO:0051169;nuclear transport;3.53887536723786e-10!GO:0009259;ribonucleotide metabolic process;5.43449815114264e-10!GO:0005635;nuclear envelope;5.98909269316017e-10!GO:0043067;regulation of programmed cell death;6.63796072680125e-10!GO:0042981;regulation of apoptosis;8.6209173533799e-10!GO:0006446;regulation of translational initiation;1.00211985187221e-09!GO:0016491;oxidoreductase activity;1.21105281518383e-09!GO:0006163;purine nucleotide metabolic process;1.48251538937902e-09!GO:0030554;adenyl nucleotide binding;2.00891272673441e-09!GO:0005524;ATP binding;2.08828390987085e-09!GO:0005793;ER-Golgi intermediate compartment;2.20701829137964e-09!GO:0009150;purine ribonucleotide metabolic process;2.35899388696185e-09!GO:0017038;protein import;2.41458742854128e-09!GO:0008639;small protein conjugating enzyme activity;2.82545226638053e-09!GO:0032559;adenyl ribonucleotide binding;3.4372305012269e-09!GO:0009108;coenzyme biosynthetic process;3.917796216174e-09!GO:0031965;nuclear membrane;3.92629351590064e-09!GO:0022402;cell cycle process;4.93671784010678e-09!GO:0048475;coated membrane;5.03047247660463e-09!GO:0030117;membrane coat;5.03047247660463e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.13817735426713e-09!GO:0005768;endosome;5.52398588813761e-09!GO:0030120;vesicle coat;5.55549138413917e-09!GO:0030662;coated vesicle membrane;5.55549138413917e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.70147512722452e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.70147512722452e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.70147512722452e-09!GO:0004842;ubiquitin-protein ligase activity;5.77294009810714e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.5533807092172e-09!GO:0003712;transcription cofactor activity;7.46524078034467e-09!GO:0044453;nuclear membrane part;8.06647093993454e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;8.55748910159713e-09!GO:0019787;small conjugating protein ligase activity;9.24478327671154e-09!GO:0009141;nucleoside triphosphate metabolic process;9.40610570722325e-09!GO:0006164;purine nucleotide biosynthetic process;1.12027125945384e-08!GO:0009260;ribonucleotide biosynthetic process;1.18646101823773e-08!GO:0043038;amino acid activation;1.54255762027584e-08!GO:0006418;tRNA aminoacylation for protein translation;1.54255762027584e-08!GO:0043039;tRNA aminoacylation;1.54255762027584e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.55379771823876e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.76502760480447e-08!GO:0006974;response to DNA damage stimulus;2.01800360347011e-08!GO:0016881;acid-amino acid ligase activity;2.59035909188463e-08!GO:0007005;mitochondrion organization and biogenesis;2.70477116149118e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.21088268555908e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.21088268555908e-08!GO:0006323;DNA packaging;3.21307154860285e-08!GO:0016740;transferase activity;3.46460144680043e-08!GO:0015986;ATP synthesis coupled proton transport;4.0732993093655e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.0732993093655e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.27627849520728e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.27627849520728e-08!GO:0016604;nuclear body;4.34353502020847e-08!GO:0051246;regulation of protein metabolic process;5.45626837173875e-08!GO:0000074;regulation of progression through cell cycle;5.45626837173875e-08!GO:0051726;regulation of cell cycle;6.02246957909287e-08!GO:0006366;transcription from RNA polymerase II promoter;6.90280123330692e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.13079279930327e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.13079279930327e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.27005399300638e-08!GO:0006364;rRNA processing;9.6232705512359e-08!GO:0016072;rRNA metabolic process;1.28229592485546e-07!GO:0000278;mitotic cell cycle;1.29572105594508e-07!GO:0048523;negative regulation of cellular process;1.41294973655975e-07!GO:0005643;nuclear pore;1.57827644947507e-07!GO:0019829;cation-transporting ATPase activity;2.08666757289554e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.4038781226487e-07!GO:0046034;ATP metabolic process;2.82078742373092e-07!GO:0051276;chromosome organization and biogenesis;2.96167644240396e-07!GO:0044431;Golgi apparatus part;3.22107012330957e-07!GO:0042623;ATPase activity, coupled;3.29129949917208e-07!GO:0065002;intracellular protein transport across a membrane;3.39519095604377e-07!GO:0009060;aerobic respiration;3.54565144910917e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.88852996501884e-07!GO:0016887;ATPase activity;4.19173686987037e-07!GO:0006752;group transfer coenzyme metabolic process;4.34510797029499e-07!GO:0043069;negative regulation of programmed cell death;5.43362190576841e-07!GO:0009719;response to endogenous stimulus;5.64589619293596e-07!GO:0003924;GTPase activity;6.10880591427286e-07!GO:0016787;hydrolase activity;6.34320028582808e-07!GO:0006754;ATP biosynthetic process;6.72225138459191e-07!GO:0006753;nucleoside phosphate metabolic process;6.72225138459191e-07!GO:0009117;nucleotide metabolic process;7.25041994095977e-07!GO:0006916;anti-apoptosis;7.5834308368613e-07!GO:0065004;protein-DNA complex assembly;7.95089606764686e-07!GO:0006091;generation of precursor metabolites and energy;1.15780789972208e-06!GO:0043066;negative regulation of apoptosis;1.28169139796902e-06!GO:0045333;cellular respiration;1.62534858925023e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.66472815869328e-06!GO:0006281;DNA repair;1.9657756138779e-06!GO:0048519;negative regulation of biological process;2.03973874905901e-06!GO:0032446;protein modification by small protein conjugation;2.36013540555782e-06!GO:0016607;nuclear speck;2.69007661100184e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.69306806341501e-06!GO:0046930;pore complex;2.80054021710387e-06!GO:0006333;chromatin assembly or disassembly;3.03830393944084e-06!GO:0000785;chromatin;3.24635369804359e-06!GO:0016567;protein ubiquitination;3.67149356282776e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.81078624996353e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.25588989080972e-06!GO:0051170;nuclear import;4.70704707995903e-06!GO:0005773;vacuole;4.80917597077832e-06!GO:0045259;proton-transporting ATP synthase complex;5.13521102825123e-06!GO:0005762;mitochondrial large ribosomal subunit;5.13521102825123e-06!GO:0000315;organellar large ribosomal subunit;5.13521102825123e-06!GO:0045454;cell redox homeostasis;5.18690631159815e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.45890054433245e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.52147998968435e-06!GO:0043623;cellular protein complex assembly;6.33881176690467e-06!GO:0016779;nucleotidyltransferase activity;6.80797910633998e-06!GO:0006606;protein import into nucleus;7.09707115906164e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.18563211881906e-06!GO:0006099;tricarboxylic acid cycle;7.70025684553576e-06!GO:0046356;acetyl-CoA catabolic process;7.70025684553576e-06!GO:0000139;Golgi membrane;8.20294631668997e-06!GO:0009109;coenzyme catabolic process;1.01403261768415e-05!GO:0006793;phosphorus metabolic process;1.08152419892014e-05!GO:0006796;phosphate metabolic process;1.08152419892014e-05!GO:0044440;endosomal part;1.23175832194262e-05!GO:0010008;endosome membrane;1.23175832194262e-05!GO:0006084;acetyl-CoA metabolic process;1.23175832194262e-05!GO:0051187;cofactor catabolic process;1.31535262423555e-05!GO:0005770;late endosome;1.43489032888252e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.45081805957841e-05!GO:0006334;nucleosome assembly;1.46897329456292e-05!GO:0031497;chromatin assembly;1.53881591954393e-05!GO:0031988;membrane-bound vesicle;1.71828878997217e-05!GO:0008026;ATP-dependent helicase activity;1.72761420922887e-05!GO:0050794;regulation of cellular process;1.86565870583285e-05!GO:0005525;GTP binding;1.907429715717e-05!GO:0006260;DNA replication;2.02271247722013e-05!GO:0005694;chromosome;2.11300660479675e-05!GO:0031252;leading edge;2.18254297594518e-05!GO:0004386;helicase activity;2.25574521491997e-05!GO:0005798;Golgi-associated vesicle;2.43273357719833e-05!GO:0004298;threonine endopeptidase activity;3.16601137543528e-05!GO:0006082;organic acid metabolic process;3.72117957073461e-05!GO:0050657;nucleic acid transport;3.72117957073461e-05!GO:0051236;establishment of RNA localization;3.72117957073461e-05!GO:0050658;RNA transport;3.72117957073461e-05!GO:0000323;lytic vacuole;3.72117957073461e-05!GO:0005764;lysosome;3.72117957073461e-05!GO:0005788;endoplasmic reticulum lumen;3.7825201862563e-05!GO:0008654;phospholipid biosynthetic process;3.85424935730171e-05!GO:0003899;DNA-directed RNA polymerase activity;4.08835582957201e-05!GO:0006403;RNA localization;4.08835582957201e-05!GO:0030118;clathrin coat;4.19886416682385e-05!GO:0019752;carboxylic acid metabolic process;4.28132906670108e-05!GO:0065009;regulation of a molecular function;4.34923587051367e-05!GO:0044427;chromosomal part;4.4175869708337e-05!GO:0000087;M phase of mitotic cell cycle;4.77395266980957e-05!GO:0005667;transcription factor complex;4.95608770093195e-05!GO:0016853;isomerase activity;5.30103718098681e-05!GO:0006613;cotranslational protein targeting to membrane;5.38806556570517e-05!GO:0007067;mitosis;5.61223547220355e-05!GO:0005905;coated pit;5.90691376984181e-05!GO:0048522;positive regulation of cellular process;6.33096917220722e-05!GO:0000314;organellar small ribosomal subunit;8.20115316006908e-05!GO:0005763;mitochondrial small ribosomal subunit;8.20115316006908e-05!GO:0016568;chromatin modification;8.62265178389012e-05!GO:0042802;identical protein binding;8.78084047884174e-05!GO:0008033;tRNA processing;8.80367064001866e-05!GO:0000245;spliceosome assembly;9.07326368958787e-05!GO:0031968;organelle outer membrane;0.000104922433551658!GO:0051427;hormone receptor binding;0.000113012704528897!GO:0019867;outer membrane;0.000113380536109382!GO:0033116;ER-Golgi intermediate compartment membrane;0.000114964388371411!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000116899256784082!GO:0031982;vesicle;0.000117828329420763!GO:0031410;cytoplasmic vesicle;0.000143435277001946!GO:0003697;single-stranded DNA binding;0.000146556637968166!GO:0030132;clathrin coat of coated pit;0.000152715184939081!GO:0000786;nucleosome;0.000158006058991029!GO:0019899;enzyme binding;0.000159470228626922!GO:0045786;negative regulation of progression through cell cycle;0.000161780244313574!GO:0005741;mitochondrial outer membrane;0.000166744839896628!GO:0003713;transcription coactivator activity;0.000166744839896628!GO:0043021;ribonucleoprotein binding;0.000172369813528813!GO:0048037;cofactor binding;0.000207307929831841!GO:0050662;coenzyme binding;0.000207778739361304!GO:0022403;cell cycle phase;0.000209911968952513!GO:0007243;protein kinase cascade;0.000218923273578748!GO:0007006;mitochondrial membrane organization and biogenesis;0.000220814704490308!GO:0035257;nuclear hormone receptor binding;0.000227275127530706!GO:0016310;phosphorylation;0.000234765957538955!GO:0003714;transcription corepressor activity;0.000249116515158145!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000265062485454236!GO:0003724;RNA helicase activity;0.000280812940824022!GO:0030119;AP-type membrane coat adaptor complex;0.000281299191865213!GO:0030867;rough endoplasmic reticulum membrane;0.000297166861550739!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000297214371264367!GO:0032561;guanyl ribonucleotide binding;0.000331299118497852!GO:0019001;guanyl nucleotide binding;0.000331299118497852!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000331483271970153!GO:0008610;lipid biosynthetic process;0.00034840512008553!GO:0030658;transport vesicle membrane;0.000362512128924094!GO:0000151;ubiquitin ligase complex;0.000365194514180675!GO:0006626;protein targeting to mitochondrion;0.000374933032251777!GO:0005769;early endosome;0.000388465848974346!GO:0006520;amino acid metabolic process;0.000395580692674273!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000397518149316008!GO:0005048;signal sequence binding;0.000418939704429437!GO:0030131;clathrin adaptor complex;0.000435922546677692!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000443895677379564!GO:0016564;transcription repressor activity;0.000448331261141032!GO:0043566;structure-specific DNA binding;0.000451703702925145!GO:0043065;positive regulation of apoptosis;0.000451703702925145!GO:0030176;integral to endoplasmic reticulum membrane;0.000457180696853159!GO:0031324;negative regulation of cellular metabolic process;0.000469954510225542!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000491590867567089!GO:0043068;positive regulation of programmed cell death;0.000494970591340911!GO:0043681;protein import into mitochondrion;0.000516870617004683!GO:0009967;positive regulation of signal transduction;0.00053356950101843!GO:0007264;small GTPase mediated signal transduction;0.00053410874663975!GO:0016563;transcription activator activity;0.000553499660789102!GO:0051028;mRNA transport;0.000553822862150208!GO:0016859;cis-trans isomerase activity;0.000565893087715015!GO:0006839;mitochondrial transport;0.000612207439288886!GO:0008250;oligosaccharyl transferase complex;0.000620977139911117!GO:0030125;clathrin vesicle coat;0.000631356804985832!GO:0030665;clathrin coated vesicle membrane;0.000631356804985832!GO:0030031;cell projection biogenesis;0.000635005638760383!GO:0016044;membrane organization and biogenesis;0.000653467792323016!GO:0006979;response to oxidative stress;0.000671852779240292!GO:0004576;oligosaccharyl transferase activity;0.000673970542103973!GO:0051168;nuclear export;0.000688823436691003!GO:0046474;glycerophospholipid biosynthetic process;0.000698642934558736!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000699111432779287!GO:0006891;intra-Golgi vesicle-mediated transport;0.000722561543238172!GO:0016126;sterol biosynthetic process;0.000770483089569261!GO:0030036;actin cytoskeleton organization and biogenesis;0.000863996939348714!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000873609092162543!GO:0048471;perinuclear region of cytoplasm;0.000897017949511259!GO:0015630;microtubule cytoskeleton;0.000902140078285954!GO:0015980;energy derivation by oxidation of organic compounds;0.000902140078285954!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000923934612174448!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0010210275358689!GO:0006612;protein targeting to membrane;0.00116137671127296!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00118383354273387!GO:0030660;Golgi-associated vesicle membrane;0.00120703567719587!GO:0006118;electron transport;0.00121694433092198!GO:0051920;peroxiredoxin activity;0.00121694433092198!GO:0051789;response to protein stimulus;0.00125531583650275!GO:0006986;response to unfolded protein;0.00125531583650275!GO:0006414;translational elongation;0.00127401384200898!GO:0005885;Arp2/3 protein complex;0.00127584470770312!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00129778185585029!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00133711089623276!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00140262382363663!GO:0031072;heat shock protein binding;0.00140980853488888!GO:0009892;negative regulation of metabolic process;0.00150365161391979!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00157409418503723!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00157409418503723!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00157409418503723!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00157409418503723!GO:0015399;primary active transmembrane transporter activity;0.00157409418503723!GO:0009165;nucleotide biosynthetic process;0.00170199855894712!GO:0001726;ruffle;0.00171909857246889!GO:0030880;RNA polymerase complex;0.0018272165716841!GO:0005813;centrosome;0.00185279207532735!GO:0048518;positive regulation of biological process;0.00192130862816068!GO:0051252;regulation of RNA metabolic process;0.00195147744990331!GO:0005791;rough endoplasmic reticulum;0.00203615722841012!GO:0043488;regulation of mRNA stability;0.0021063195022374!GO:0043487;regulation of RNA stability;0.0021063195022374!GO:0000049;tRNA binding;0.00219505163122021!GO:0016197;endosome transport;0.00221580204821117!GO:0030133;transport vesicle;0.00222510878556224!GO:0030663;COPI coated vesicle membrane;0.00233647105671799!GO:0030126;COPI vesicle coat;0.00233647105671799!GO:0046489;phosphoinositide biosynthetic process;0.00235199853649491!GO:0019843;rRNA binding;0.00246167021724997!GO:0008632;apoptotic program;0.00249962890382952!GO:0050790;regulation of catalytic activity;0.00251350516590302!GO:0018196;peptidyl-asparagine modification;0.00254222164066421!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00254222164066421!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00262434319553769!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00286180044666791!GO:0046467;membrane lipid biosynthetic process;0.00294473731684157!GO:0000059;protein import into nucleus, docking;0.00294473731684157!GO:0051098;regulation of binding;0.0030137499010449!GO:0006818;hydrogen transport;0.00307018650520281!GO:0050789;regulation of biological process;0.00308384943187376!GO:0015992;proton transport;0.00308755517412103!GO:0008652;amino acid biosynthetic process;0.00320286182665741!GO:0006402;mRNA catabolic process;0.00321100394854988!GO:0051329;interphase of mitotic cell cycle;0.0032562508444547!GO:0006695;cholesterol biosynthetic process;0.00338062742797478!GO:0030137;COPI-coated vesicle;0.00357384864002706!GO:0016481;negative regulation of transcription;0.00364108640364097!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00383446250221334!GO:0000428;DNA-directed RNA polymerase complex;0.00383446250221334!GO:0030659;cytoplasmic vesicle membrane;0.00385074816065787!GO:0051301;cell division;0.00385908449739353!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00388715195365679!GO:0006917;induction of apoptosis;0.00388715195365679!GO:0008186;RNA-dependent ATPase activity;0.00390298456476627!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00415588108948064!GO:0030029;actin filament-based process;0.00415588108948064!GO:0017166;vinculin binding;0.00416679698535682!GO:0000279;M phase;0.00416679698535682!GO:0048500;signal recognition particle;0.0041981340747016!GO:0006650;glycerophospholipid metabolic process;0.00441625621718384!GO:0006401;RNA catabolic process;0.00449769041331701!GO:0048468;cell development;0.00452946423924777!GO:0008092;cytoskeletal protein binding;0.00459244358453032!GO:0005684;U2-dependent spliceosome;0.00484707929685217!GO:0046483;heterocycle metabolic process;0.0052387387952683!GO:0045045;secretory pathway;0.0052387387952683!GO:0012502;induction of programmed cell death;0.00525607907088132!GO:0005815;microtubule organizing center;0.00530022752119849!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00549049376594616!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00553347134269206!GO:0044262;cellular carbohydrate metabolic process;0.00575953716614195!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00579389992036969!GO:0008139;nuclear localization sequence binding;0.00598454922723551!GO:0051287;NAD binding;0.00599999732653548!GO:0006595;polyamine metabolic process;0.00608905799478753!GO:0016791;phosphoric monoester hydrolase activity;0.00666928186087638!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00682525919464743!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00682525919464743!GO:0044255;cellular lipid metabolic process;0.00735712014648329!GO:0006733;oxidoreduction coenzyme metabolic process;0.00745411396056262!GO:0006749;glutathione metabolic process;0.00751786335916704!GO:0008637;apoptotic mitochondrial changes;0.00755314561243918!GO:0051325;interphase;0.00765605389055026!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00802880846311677!GO:0007010;cytoskeleton organization and biogenesis;0.00815809081975927!GO:0030833;regulation of actin filament polymerization;0.00820065026217642!GO:0030134;ER to Golgi transport vesicle;0.00822827882443625!GO:0048487;beta-tubulin binding;0.00835979667437686!GO:0004004;ATP-dependent RNA helicase activity;0.00859695033570051!GO:0051101;regulation of DNA binding;0.00874137291914688!GO:0035258;steroid hormone receptor binding;0.008841087830543!GO:0005774;vacuolar membrane;0.00913567377174611!GO:0030503;regulation of cell redox homeostasis;0.00935526487477717!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00965957087196185!GO:0006383;transcription from RNA polymerase III promoter;0.00974916359748277!GO:0005149;interleukin-1 receptor binding;0.00974916359748277!GO:0006509;membrane protein ectodomain proteolysis;0.00991925552553723!GO:0033619;membrane protein proteolysis;0.00991925552553723!GO:0016311;dephosphorylation;0.00998932928484067!GO:0006611;protein export from nucleus;0.0100939788068618!GO:0015631;tubulin binding;0.01027708989794!GO:0003746;translation elongation factor activity;0.0103048656286411!GO:0031529;ruffle organization and biogenesis;0.0105254952359959!GO:0045941;positive regulation of transcription;0.0105676271483074!GO:0003684;damaged DNA binding;0.0105676271483074!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0105676271483074!GO:0009166;nucleotide catabolic process;0.010609704474572!GO:0006417;regulation of translation;0.0108681427494655!GO:0043492;ATPase activity, coupled to movement of substances;0.0110354854168651!GO:0000096;sulfur amino acid metabolic process;0.011100131092203!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0112790381257889!GO:0045047;protein targeting to ER;0.0112790381257889!GO:0006519;amino acid and derivative metabolic process;0.0114236051456275!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0116844596605881!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0117288432975561!GO:0016125;sterol metabolic process;0.0117686291925348!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0121167146870313!GO:0046822;regulation of nucleocytoplasmic transport;0.0122123048598267!GO:0003729;mRNA binding;0.0123438136507467!GO:0045893;positive regulation of transcription, DNA-dependent;0.0124144598330111!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0124880918629239!GO:0030027;lamellipodium;0.0126670184338582!GO:0008312;7S RNA binding;0.0127105489375351!GO:0030433;ER-associated protein catabolic process;0.0127402264940464!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0127402264940464!GO:0044433;cytoplasmic vesicle part;0.012819163200117!GO:0016741;transferase activity, transferring one-carbon groups;0.0128281483341447!GO:0051540;metal cluster binding;0.0129882869886569!GO:0051536;iron-sulfur cluster binding;0.0129882869886569!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0131883392952653!GO:0006066;alcohol metabolic process;0.0132285705915201!GO:0006506;GPI anchor biosynthetic process;0.0134082480544157!GO:0006740;NADPH regeneration;0.0135059922558249!GO:0006098;pentose-phosphate shunt;0.0135059922558249!GO:0044452;nucleolar part;0.0136974695135885!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0137418407553569!GO:0051087;chaperone binding;0.0137945821156294!GO:0008629;induction of apoptosis by intracellular signals;0.0140454878792236!GO:0048144;fibroblast proliferation;0.0140551182922618!GO:0048145;regulation of fibroblast proliferation;0.0140551182922618!GO:0008168;methyltransferase activity;0.0140844499533351!GO:0030127;COPII vesicle coat;0.0141920389979488!GO:0012507;ER to Golgi transport vesicle membrane;0.0141920389979488!GO:0006289;nucleotide-excision repair;0.0143725007299997!GO:0006497;protein amino acid lipidation;0.0143725007299997!GO:0008361;regulation of cell size;0.0143725007299997!GO:0006778;porphyrin metabolic process;0.0143725007299997!GO:0033013;tetrapyrrole metabolic process;0.0143725007299997!GO:0030128;clathrin coat of endocytic vesicle;0.0143725007299997!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0143725007299997!GO:0030122;AP-2 adaptor complex;0.0143725007299997!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0143725007299997!GO:0010257;NADH dehydrogenase complex assembly;0.0143725007299997!GO:0033108;mitochondrial respiratory chain complex assembly;0.0143725007299997!GO:0051128;regulation of cellular component organization and biogenesis;0.0147421850527475!GO:0030032;lamellipodium biogenesis;0.0147426453120884!GO:0045334;clathrin-coated endocytic vesicle;0.0147727323018971!GO:0003690;double-stranded DNA binding;0.0154262177724035!GO:0045926;negative regulation of growth;0.0155618678613326!GO:0005819;spindle;0.0157607691749641!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0157806373395528!GO:0015002;heme-copper terminal oxidase activity;0.0157806373395528!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0157806373395528!GO:0004129;cytochrome-c oxidase activity;0.0157806373395528!GO:0006779;porphyrin biosynthetic process;0.0158292595976747!GO:0033014;tetrapyrrole biosynthetic process;0.0158292595976747!GO:0043022;ribosome binding;0.0159990196030909!GO:0006354;RNA elongation;0.0161035312934179!GO:0030384;phosphoinositide metabolic process;0.0161035312934179!GO:0031272;regulation of pseudopodium formation;0.0161035312934179!GO:0031269;pseudopodium formation;0.0161035312934179!GO:0031344;regulation of cell projection organization and biogenesis;0.0161035312934179!GO:0031268;pseudopodium organization and biogenesis;0.0161035312934179!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0161035312934179!GO:0031274;positive regulation of pseudopodium formation;0.0161035312934179!GO:0006730;one-carbon compound metabolic process;0.0161255509399689!GO:0006984;ER-nuclear signaling pathway;0.0161810583810528!GO:0031301;integral to organelle membrane;0.0162784534020073!GO:0030041;actin filament polymerization;0.0162784534020073!GO:0004721;phosphoprotein phosphatase activity;0.0165449784119833!GO:0006505;GPI anchor metabolic process;0.0165856014727547!GO:0006643;membrane lipid metabolic process;0.0166658919698528!GO:0031902;late endosome membrane;0.0168882233570217!GO:0016049;cell growth;0.0169047327082607!GO:0043284;biopolymer biosynthetic process;0.0175231321740325!GO:0007265;Ras protein signal transduction;0.0182106313811163!GO:0005832;chaperonin-containing T-complex;0.0182320073300278!GO:0048146;positive regulation of fibroblast proliferation;0.0183912169262393!GO:0022890;inorganic cation transmembrane transporter activity;0.0186798165127441!GO:0006767;water-soluble vitamin metabolic process;0.0188575055707338!GO:0004680;casein kinase activity;0.0188794963868721!GO:0044437;vacuolar part;0.0188794963868721!GO:0042158;lipoprotein biosynthetic process;0.0189681997173348!GO:0004674;protein serine/threonine kinase activity;0.0189681997173348!GO:0006007;glucose catabolic process;0.0192580707182057!GO:0045792;negative regulation of cell size;0.01947380574584!GO:0055092;sterol homeostasis;0.0198532866359899!GO:0042632;cholesterol homeostasis;0.0198532866359899!GO:0004850;uridine phosphorylase activity;0.0198568864786252!GO:0016272;prefoldin complex;0.020163799438392!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0203116132290265!GO:0030308;negative regulation of cell growth;0.020409060672455!GO:0030145;manganese ion binding;0.020409060672455!GO:0005869;dynactin complex;0.0207460191390377!GO:0008243;plasminogen activator activity;0.020789796041717!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0209830351724536!GO:0003711;transcription elongation regulator activity;0.0214427845944246!GO:0006807;nitrogen compound metabolic process;0.021684576256527!GO:0001558;regulation of cell growth;0.0217975091790656!GO:0050178;phenylpyruvate tautomerase activity;0.0219170877969219!GO:0051272;positive regulation of cell motility;0.0220467737539865!GO:0040017;positive regulation of locomotion;0.0220467737539865!GO:0035035;histone acetyltransferase binding;0.0220967464997239!GO:0016363;nuclear matrix;0.0226935866339624!GO:0046519;sphingoid metabolic process;0.0229468064458485!GO:0008213;protein amino acid alkylation;0.0229956120926443!GO:0006479;protein amino acid methylation;0.0229956120926443!GO:0001836;release of cytochrome c from mitochondria;0.0233782302935459!GO:0007040;lysosome organization and biogenesis;0.0236314803068314!GO:0051539;4 iron, 4 sulfur cluster binding;0.024531501633341!GO:0012506;vesicle membrane;0.0248831959705988!GO:0006405;RNA export from nucleus;0.0255409266600403!GO:0008234;cysteine-type peptidase activity;0.0258540908781704!GO:0003756;protein disulfide isomerase activity;0.0258647029647562!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0258647029647562!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0258827227582447!GO:0005765;lysosomal membrane;0.0259734437595697!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.026431582221986!GO:0008538;proteasome activator activity;0.0266374631323091!GO:0006352;transcription initiation;0.0271401601935591!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0271880549664596!GO:0051338;regulation of transferase activity;0.0291007229111103!GO:0009303;rRNA transcription;0.029281912123592!GO:0009112;nucleobase metabolic process;0.0294759103779537!GO:0008180;signalosome;0.0294782127793027!GO:0051059;NF-kappaB binding;0.0299867310961661!GO:0046983;protein dimerization activity;0.0299867310961661!GO:0007088;regulation of mitosis;0.0301898771522097!GO:0043414;biopolymer methylation;0.0301898771522097!GO:0055088;lipid homeostasis;0.0306889855988788!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0309325133472211!GO:0012510;trans-Golgi network transport vesicle membrane;0.0309325133472211!GO:0019318;hexose metabolic process;0.0309593803612108!GO:0005637;nuclear inner membrane;0.0318486283520865!GO:0033673;negative regulation of kinase activity;0.0324544969778487!GO:0006469;negative regulation of protein kinase activity;0.0324544969778487!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0326184672773452!GO:0032507;maintenance of cellular protein localization;0.0328956441912013!GO:0046426;negative regulation of JAK-STAT cascade;0.0329571536082015!GO:0030521;androgen receptor signaling pathway;0.032978273753344!GO:0042987;amyloid precursor protein catabolic process;0.0331128741086966!GO:0007050;cell cycle arrest;0.0335472809297297!GO:0031326;regulation of cellular biosynthetic process;0.0338295138028998!GO:0045892;negative regulation of transcription, DNA-dependent;0.0338829956834052!GO:0042168;heme metabolic process;0.0338829956834052!GO:0006739;NADP metabolic process;0.0342389026551941!GO:0006629;lipid metabolic process;0.034449446229591!GO:0009308;amine metabolic process;0.0345192740518801!GO:0000287;magnesium ion binding;0.0346205843047014!GO:0051716;cellular response to stimulus;0.0354965574074879!GO:0005996;monosaccharide metabolic process;0.0358378357841908!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0359682449741544!GO:0009116;nucleoside metabolic process;0.0365753366252947!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0366096353346564!GO:0006261;DNA-dependent DNA replication;0.0366204062046602!GO:0040029;regulation of gene expression, epigenetic;0.0369199499532723!GO:0051348;negative regulation of transferase activity;0.0374029039014883!GO:0006783;heme biosynthetic process;0.0381472594046292!GO:0007033;vacuole organization and biogenesis;0.0385191501888396!GO:0006458;'de novo' protein folding;0.0385191501888396!GO:0051084;'de novo' posttranslational protein folding;0.0385191501888396!GO:0007034;vacuolar transport;0.0385191501888396!GO:0004177;aminopeptidase activity;0.0386767740076391!GO:0008426;protein kinase C inhibitor activity;0.0393921146558568!GO:0006644;phospholipid metabolic process;0.0397058032644737!GO:0000339;RNA cap binding;0.0398890029716193!GO:0008154;actin polymerization and/or depolymerization;0.0420696378582623!GO:0043189;H4/H2A histone acetyltransferase complex;0.0427326593716801!GO:0005758;mitochondrial intermembrane space;0.0431708338118439!GO:0033559;unsaturated fatty acid metabolic process;0.0435932121425431!GO:0006636;unsaturated fatty acid biosynthetic process;0.0435932121425431!GO:0048660;regulation of smooth muscle cell proliferation;0.0435932121425431!GO:0035303;regulation of dephosphorylation;0.0441742481142982!GO:0005862;muscle thin filament tropomyosin;0.0446100387838896!GO:0006672;ceramide metabolic process;0.0447452853184421!GO:0051336;regulation of hydrolase activity;0.0454975038294829!GO:0016407;acetyltransferase activity;0.0458454285572813!GO:0016251;general RNA polymerase II transcription factor activity;0.0459605435007735!GO:0032940;secretion by cell;0.0459605435007735!GO:0006596;polyamine biosynthetic process;0.0459605435007735!GO:0006516;glycoprotein catabolic process;0.0459605435007735!GO:0006904;vesicle docking during exocytosis;0.0460441178903597!GO:0006376;mRNA splice site selection;0.0476548123798508!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0476548123798508!GO:0004681;casein kinase I activity;0.0487667350524609!GO:0000209;protein polyubiquitination;0.0489449404261747!GO:0009451;RNA modification;0.0489449404261747!GO:0022406;membrane docking;0.0489599265232968!GO:0048278;vesicle docking;0.0489599265232968!GO:0045936;negative regulation of phosphate metabolic process;0.0492006589911027!GO:0031124;mRNA 3'-end processing;0.049713724727893
|sample_id=11461
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=lung
|top_motifs=TP53:2.64136570588;PPARG:2.34950630365;TBX4,5:2.19696265597;ZEB1:1.94925354267;SNAI1..3:1.86544576101;VSX1,2:1.81813576684;MYOD1:1.71583234485;ZNF148:1.54553994492;NR5A1,2:1.30266480015;POU2F1..3:1.204899181;HMX1:1.1424746453;ZNF423:1.12931586636;ONECUT1,2:1.06008204411;EBF1:1.05312598823;TFCP2:0.989272667828;CRX:0.898478245184;SP1:0.874323940079;PAX1,9:0.858025927052;XCPE1{core}:0.855745162312;GLI1..3:0.845010195239;LMO2:0.804358466897;TEAD1:0.798668004232;ELK1,4_GABP{A,B1}:0.758136483863;ADNP_IRX_SIX_ZHX:0.754561525917;GTF2A1,2:0.732351465251;IKZF1:0.731292552123;TBP:0.725224320753;ARID5B:0.6920317071;ESR1:0.668581952197;CEBPA,B_DDIT3:0.655844872078;FOS_FOS{B,L1}_JUN{B,D}:0.654155793581;HAND1,2:0.622402508974;TFAP2{A,C}:0.584200002944;BACH2:0.558156979297;RXRA_VDR{dimer}:0.535652693151;FOXM1:0.52622137019;AR:0.47841722108;MTF1:0.465864022678;ZIC1..3:0.464573385261;TFAP4:0.464073587371;RXR{A,B,G}:0.458360020143;NANOG:0.422926177996;bHLH_family:0.408148555292;FOXQ1:0.401439697232;HLF:0.385446069564;FOSL2:0.350271516904;POU1F1:0.348765652473;EP300:0.338054101116;TEF:0.303439020217;ALX4:0.301516288916;NFE2:0.28320258161;TLX1..3_NFIC{dimer}:0.236101691317;NKX2-2,8:0.215712004944;NFIL3:0.195163549634;HIF1A:0.172599015626;HES1:0.169097008831;ZBTB6:0.167506120239;PAX2:0.163780777867;UFEwm:0.13132209898;REST:0.113285784348;TLX2:0.104533898653;CDC5L:0.0890889977597;HOX{A5,B5}:0.0778854905583;ATF4:0.0585186497405;PAX8:0.0557014151599;YY1:0.041457796943;ZNF238:0.0124691190493;NKX2-3_NKX2-5:0.00703132523121;GZF1:-0.0129677954153;SMAD1..7,9:-0.0298912134424;POU6F1:-0.0347730721053;HNF4A_NR2F1,2:-0.0358048391186;STAT5{A,B}:-0.0366259624037;GFI1B:-0.0395027488789;ESRRA:-0.043202953882;NR1H4:-0.0480194665562;SOX17:-0.0635996487895;FOX{F1,F2,J1}:-0.0838793597966;NFKB1_REL_RELA:-0.0884782453132;KLF4:-0.136375000119;ELF1,2,4:-0.142558567872;SPZ1:-0.144785568615;T:-0.159632054418;ETS1,2:-0.169063639791;RBPJ:-0.171655709052;LEF1_TCF7_TCF7L1,2:-0.18099941069;NFE2L1:-0.183052767063;NKX2-1,4:-0.18519337874;LHX3,4:-0.186925698689;ZNF143:-0.208726793274;MAZ:-0.222016349224;POU5F1:-0.225898899804;MAFB:-0.229163827973;NKX3-2:-0.253317769006;TFAP2B:-0.253515009753;SOX{8,9,10}:-0.261387173383;PAX5:-0.263701062127;RREB1:-0.26789929249;HNF1A:-0.281361363254;NR3C1:-0.285347053381;SOX2:-0.289784065636;NR6A1:-0.291221543251;GATA6:-0.304459584872;NFE2L2:-0.309837967337;MED-1{core}:-0.330946627162;ATF2:-0.349069050458;SPIB:-0.362354577075;ATF5_CREB3:-0.376464169699;PBX1:-0.382643955341;GFI1:-0.420878593262;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.422207159556;JUN:-0.424350148757;TOPORS:-0.431886113453;STAT2,4,6:-0.43745401559;HIC1:-0.444509316782;NRF1:-0.462719358927;EN1,2:-0.467718950838;RFX1:-0.482094082642;GTF2I:-0.483558005105;PAX4:-0.484368645247;HOX{A4,D4}:-0.492893795208;NFY{A,B,C}:-0.497802294288;RFX2..5_RFXANK_RFXAP:-0.516003484283;RUNX1..3:-0.51914370325;TFDP1:-0.522224642479;RORA:-0.54183359282;SPI1:-0.545305937103;ALX1:-0.556028253715;POU3F1..4:-0.564348678712;OCT4_SOX2{dimer}:-0.56670916099;MYB:-0.594635200738;IRF7:-0.615457789616;CREB1:-0.618710903096;PDX1:-0.621675110559;AIRE:-0.625411455493;EGR1..3:-0.631873635936;MEF2{A,B,C,D}:-0.640815046781;FOXL1:-0.641490541716;GCM1,2:-0.653756482119;HOX{A6,A7,B6,B7}:-0.667924543511;SRF:-0.717975577704;ATF6:-0.72329378648;FOXN1:-0.733979591953;MYBL2:-0.742246111473;NHLH1,2:-0.74983936378;AHR_ARNT_ARNT2:-0.751396011698;NANOG{mouse}:-0.789936164879;NFIX:-0.799091354301;PATZ1:-0.803062010788;PITX1..3:-0.846071773632;ZFP161:-0.860234880283;CUX2:-0.887680930216;E2F1..5:-0.901404993402;MTE{core}:-0.918575014399;PRRX1,2:-0.934164892375;HSF1,2:-0.936199757074;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.936768563992;MYFfamily:-0.95950493475;MZF1:-0.965564310116;NFATC1..3:-0.989878442326;EVI1:-0.999369189339;NKX3-1:-1.02958390472;BREu{core}:-1.04647753779;XBP1:-1.0528157374;PRDM1:-1.07316674808;CDX1,2,4:-1.13039185155;TGIF1:-1.13079696078;SOX5:-1.1599703934;FOX{D1,D2}:-1.17786876277;HOXA9_MEIS1:-1.19587876146;PAX3,7:-1.22525252503;TAL1_TCF{3,4,12}:-1.2277347948;FOXP1:-1.263304932;FOX{I1,J2}:-1.28811559388;PAX6:-1.30259933435;NKX6-1,2:-1.30552187016;DMAP1_NCOR{1,2}_SMARC:-1.33005878061;BPTF:-1.36161245585;FOXO1,3,4:-1.37668956331;SREBF1,2:-1.41051335341;ZBTB16:-1.4356780709;IRF1,2:-1.44259663671;DBP:-1.49479695238;FOXA2:-1.56211107216;FOXD3:-1.56758188306;FOXP3:-1.5987280216;ZNF384:-1.60380928621;STAT1,3:-1.6134275139;GATA4:-1.767009796;IKZF2:-1.98517950199;HMGA1,2:-2.15370547962;HBP1_HMGB_SSRP1_UBTF:-2.23426326489
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11461-119B3;search_select_hide=table117:FF:11461-119B3
}}
}}

Latest revision as of 18:02, 4 June 2020

Name:Bronchial Epithelial Cell, donor6
Species:Human (Homo sapiens)
Library ID:CNhs12062
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stage45 years old adult
sexmale
age45
cell typeepithelial cell of lung, bronchial
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1217
catalog numberCA502-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005825
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12062 CAGE DRX008124 DRR008996
Accession ID Hg19

Library idBAMCTSS
CNhs12062 DRZ000421 DRZ001806
Accession ID Hg38

Library idBAMCTSS
CNhs12062 DRZ011771 DRZ013156
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0602
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.237
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.137
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0134
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.282
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0351
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.13
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.672
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.161
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.237
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.558
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.044
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0602
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.555
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.117
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.137
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.137
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12062

Jaspar motifP-value
MA0002.20.997
MA0003.10.421
MA0004.10.533
MA0006.10.146
MA0007.10.209
MA0009.10.198
MA0014.10.423
MA0017.10.137
MA0018.20.197
MA0019.10.608
MA0024.10.00499
MA0025.10.446
MA0027.10.425
MA0028.10.0564
MA0029.10.26
MA0030.10.969
MA0031.10.0757
MA0035.20.266
MA0038.10.528
MA0039.20.00513
MA0040.10.666
MA0041.10.346
MA0042.10.978
MA0043.10.354
MA0046.10.351
MA0047.20.0929
MA0048.10.665
MA0050.13.69934e-11
MA0051.15.18939e-6
MA0052.10.853
MA0055.10.0107
MA0057.10.0965
MA0058.10.312
MA0059.10.619
MA0060.10.239
MA0061.10.779
MA0062.20.0679
MA0065.20.00905
MA0066.10.116
MA0067.10.231
MA0068.10.0323
MA0069.10.55
MA0070.10.952
MA0071.10.937
MA0072.10.963
MA0073.10.784
MA0074.10.98
MA0076.10.262
MA0077.10.951
MA0078.10.616
MA0079.20.28
MA0080.20.0562
MA0081.10.229
MA0083.10.467
MA0084.10.0817
MA0087.10.409
MA0088.10.435
MA0090.10.0656
MA0091.10.83
MA0092.10.934
MA0093.10.466
MA0099.26.66228e-14
MA0100.10.0475
MA0101.10.725
MA0102.20.55
MA0103.13.67011e-7
MA0104.20.851
MA0105.10.797
MA0106.17.77906e-8
MA0107.10.587
MA0108.20.191
MA0111.10.811
MA0112.20.0237
MA0113.10.312
MA0114.10.07
MA0115.10.628
MA0116.10.121
MA0117.10.596
MA0119.10.275
MA0122.10.553
MA0124.10.611
MA0125.10.664
MA0131.10.41
MA0135.10.0334
MA0136.10.563
MA0137.20.00988
MA0138.20.096
MA0139.10.366
MA0140.10.923
MA0141.10.0801
MA0142.10.221
MA0143.10.771
MA0144.10.632
MA0145.10.0299
MA0146.10.0237
MA0147.10.994
MA0148.10.0548
MA0149.10.122
MA0150.10.109
MA0152.10.147
MA0153.10.19
MA0154.10.222
MA0155.10.322
MA0156.10.6
MA0157.10.0355
MA0159.10.0768
MA0160.10.302
MA0162.10.165
MA0163.10.404
MA0164.10.885
MA0258.10.122
MA0259.10.803



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12062

Novel motifP-value
10.579
100.976
1000.737
1010.00153
1020.0949
1030.151
1040.392
1050.0888
1060.0502
1070.0716
1080.44
1095.50129e-4
110.0631
1100.0716
1110.502
1120.243
1130.433
1140.349
1150.163
1160.274
1170.174
1180.908
1190.142
120.32
1200.0762
1210.741
1220.07
1230.379
1240.132
1250.848
1260.495
1270.0344
1280.612
1290.121
130.0349
1300.773
1310.427
1320.489
1335.7783e-4
1340.189
1350.976
1360.0753
1370.0702
1380.704
1390.233
140.736
1400.0489
1410.421
1420.0492
1430.508
1440.233
1450.368
1460.00567
1470.0425
1480.18
1490.191
150.893
1500.349
1510.494
1520.036
1530.995
1540.596
1550.438
1560.305
1570.701
1580.388
1590.597
160.0202
1600.313
1610.395
1620.39
1630.699
1640.271
1650.235
1660.13
1670.264
1680.768
1690.0502
170.14
180.0569
190.404
20.175
200.717
210.476
220.187
230.58
240.109
250.81
260.143
270.448
280.762
290.238
30.582
300.0711
310.696
320.676
330.128
340.808
350.663
360.738
370.166
380.317
390.23
40.531
400.00877
410.659
420.966
430.446
440.582
450.205
460.411
470.181
480.069
490.988
50.66
500.522
510.761
520.491
530.386
540.575
550.929
560.376
570.532
580.988
590.056
60.186
600.23
610.616
620.898
630.259
640.239
650.161
660.734
670.599
680.809
690.141
70.527
700.00644
710.262
720.956
730.0127
740.0261
750.145
760.916
770.00456
780.0568
790.544
80.246
800.984
810.585
820.681
830.513
840.899
850.492
860.785
870.00589
880.473
890.0912
90.672
900.133
910.617
920.74
930.666
940.686
950.031
960.53
970.726
980.36
990.0205



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12062


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0002328 (bronchial epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000485 (simple columnar epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0004815 (lower respiratory tract epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002031 (epithelium of bronchus)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000015 (human bronchial epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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