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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000055,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0001009,UBERON:0001062,UBERON:0001473,UBERON:0002049,UBERON:0002193,UBERON:0002384,UBERON:0002405,UBERON:0002465,UBERON:0004111,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0007798
|DRA_sample_Accession=CAGE@SAMD00004725
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002554
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004725
|accession_numbers=CAGE;DRX008268;DRR009140;DRZ000565;DRZ001950;DRZ011915;DRZ013300
|accession_numbers_RNASeq=sRNA-Seq;DRX037058;DRR041424;DRZ007066
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002554
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000065
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.06!113.77!HOXC5;;chr11:46299199..46299233,+!p1@CREB3L1!1.77!284.88!CREB3L1;;chr5:92918919..92918942,+!p1@NR2F1!1.76!243.01!NR2F1;;chr12:54402745..54402788,+!p1@HOXC8!1.69!48.24!HOXC8;;chr16:86544113..86544145,+!p1@FOXF1!1.64!52.79!FOXF1;;chr6:134210243..134210257,+!p1@TCF21!1.60!39.14!TCF21;;chr9:77112244..77112262,+!p1@RORB!1.56!39.14!RORB;;chr11:46299539..46299620,+!p2@CREB3L1!1.53!54.61!CREB3L1;;chr18:19749541..19749557,+!p1@GATA6!1.52!97.39!GATA6;;chr20:42543441..42543497,+!p1@TOX2!1.48!125.60!TOX2;;chr12:54378923..54378966,+!p1@HOXC10!1.48!29.13!HOXC10;;chr4:174451370..174451387,-!p1@HAND2!1.45!27.30!HAND2;;chr6:34204921..34204939,+!p3@HMGA1!1.40!690.81!HMGA1;;chr17:46682321..46682362,-!p1@HOXB6!1.38!22.75!HOXB6;;chr15:96874012..96874042,+!p2@NR2F2!1.37!193.86!NR2F2;;chr17:41622765..41622821,-!p2@ETV4!1.37!33.68!ETV4;;chr8:49833948..49833973,-!p2@SNAI2!1.36!134.70!SNAI2;;chr19:46801639..46801699,+!p1@HIF3A!1.36!21.84!HIF3A;;chr20:42543506..42543549,+!p2@TOX2!1.35!50.06!TOX2;;chr12:54380404..54380433,+!p3@HOXC10!1.34!20.93!HOXC10;;chr4:174450089..174450153,-!p2@HAND2!1.34!20.93!HAND2;;chr18:19749386..19749404,+!p2@GATA6!1.33!29.13!GATA6;;chr19:45261550..45261641,+!p6@BCL3!1.31!31.86!BCL3;;chr5:137801160..137801176,+!p1@EGR1!1.28!1738.41!EGR1;;chr12:54380036..54380091,+!p4@HOXC10!1.26!17.29!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!1.26!17.29!HOXC9;;chr15:96873984..96873999,+!p3@NR2F2!1.24!119.23!NR2F2;;chr5:92918768..92918783,+!p8@NR2F1!1.24!16.38!NR2F1;;chr11:46299186..46299195,+!p3@CREB3L1!1.22!17.29!CREB3L1;;chr2:19558373..19558392,-!p1@OSR1!1.21!40.96!OSR1;;chr19:50432453..50432468,+!p1@ATF5!1.20!809.13!ATF5;;chr17:46675420..46675465,-!p3@HOXB6!1.20!17.29!HOXB6;;chr2:121493425..121493474,+!p1@GLI2!1.19!31.86!GLI2;;chr2:176994408..176994492,+!p1@HOXD8!1.19!14.56!HOXD8;;chr15:67430351..67430366,+!p10@SMAD3!1.19!14.56!SMAD3;;chr17:41622925..41622976,-!p3@ETV4!1.18!20.93!ETV4;;chr15:96874145..96874166,+!p7@NR2F2!1.17!26.39!NR2F2;;chr7:27205136..27205164,-!p1@HOXA9!1.17!13.65!HOXA9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.14!12.74!HOXC5;;chr15:96873921..96873946,+!p1@NR2F2!1.13!344.95!NR2F2;;chr15:96874244..96874259,+!p5@NR2F2!1.13!30.04!NR2F2;;chr5:92919068..92919082,+!p5@NR2F1!1.12!14.56!NR2F1;;chr12:54379029..54379057,+!p2@HOXC10!1.11!11.83!HOXC10;;chr2:119604456..119604501,-!p2@EN1!1.11!11.83!EN1;;chr8:49833978..49833996,-!p1@SNAI2!1.10!240.28!SNAI2;;chr8:22550982..22550999,-!p1@EGR3!1.10!32.77!EGR3;;chr11:65686802..65686818,+!p6@DRAP1!1.08!19.11!DRAP1;;chr10:101292684..101292706,+!p1@NKX2-3!1.08!10.92!NKX2-3;;chr11:65686732..65686756,+!p2@DRAP1!1.07!45.51!DRAP1;;chr19:45260775..45260838,+!p5@BCL3!1.06!13.65!BCL3;;chr1:8483878..8483907,-!p4@RERE!1.05!40.05!RERE;;chr6:34204672..34204692,+!p1@HMGA1!1.04!1122.23!HMGA1;;chr5:92918894..92918912,+!p2@NR2F1!1.04!32.77!NR2F1;;chr15:37390850..37390909,-!p3@MEIS2!1.04!20.02!MEIS2;;chr8:25902876..25902936,-!p1@EBF2!1.04!10.01!EBF2;;chr12:54410948..54410992,+!p3@HOXC5!1.04!10.01!HOXC5;;chr11:65667846..65667868,-!p1@FOSL1!1.03!258.49!FOSL1;;chr17:46622070..46622109,-!p1@HOXB2!1.03!21.84!HOXB2;;chr15:96874927..96874938,+!p8@NR2F2!1.03!20.93!NR2F2;;chr17:46687959..46688007,-!p2@HOXB7!1.03!13.65!HOXB7;;chr17:41623009..41623053,-!p4@ETV4!1.02!15.47!ETV4;;chr17:1959369..1959388,+!p2@HIC1!1.01!24.57!HIC1;;chr5:92919100..92919135,+!p3@NR2F1!1.00!10.92!NR2F1;;chr7:27196267..27196311,-!p1@HOXA7!1.00!9.10!HOXA7;;chr11:46299443..46299459,+!p4@CREB3L1!1.00!9.10!CREB3L1;;chr12:54378984..54378996,+!p7@HOXC10!1.00!9.10!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!1.00!9.10!HOXC8;;chr12:54422217..54422239,+!p3@HOXC6!1.00!9.10!HOXC6;;chr11:61520075..61520136,+!p1@C11orf9!0.99!19.11!C11orf9;;chr17:41622834..41622883,-!p6@ETV4!0.96!10.01!ETV4;;chr17:41622731..41622764,-!p5@ETV4!0.96!8.19!ETV4;;chr12:54380112..54380126,+!p5@HOXC10!0.96!8.19!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.96!8.19!HOXC8;;chr15:96873861..96873872,+!p9@NR2F2!0.94!16.38!NR2F2;;chr10:8096631..8096660,+!p1@GATA3!0.93!9.10!GATA3;;chr12:54394309..54394336,+!p2@HOXC9!0.92!7.28!HOXC9;;chr17:46675558..46675577,-!p2@HOXB6!0.92!7.28!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.92!7.28!HOXB8;;chr17:46703687..46703740,-!p1@HOXB9!0.92!7.28!HOXB9;;chr12:115121962..115121987,-!p1@TBX3!0.91!62.80!TBX3;;chr7:42276787..42276815,-!p1@GLI3!0.90!19.11!GLI3;;chr17:46622205..46622218,-!p3@HOXB2!0.90!8.19!HOXB2;;chr21:47063625..47063658,+!p1@PCBP3!0.89!30.95!PCBP3;;chr9:130954041..130954121,-!p2@CIZ1!0.89!30.95!CIZ1;;chr12:124873357..124873401,-!p1@NCOR2!0.88!80.09!NCOR2;;chr19:3366625..3366629,+!p4@NFIC!0.88!10.01!NFIC;;chr5:92918860..92918871,+!p10@NR2F1!0.88!7.28!NR2F1;;chr5:92918956..92918969,+!p4@NR2F1!0.88!7.28!NR2F1;;chr19:3366570..3366619,+!p1@NFIC!0.87!215.71!NFIC;;chr11:65687362..65687436,+!p3@DRAP1!0.87!30.95!DRAP1;;chr17:46621937..46621966,-!p2@HOXB2!0.87!18.20!HOXB2;;chr12:54379136..54379150,+!p4@HOXC5!0.87!6.37!HOXC5;;chr1:40105299..40105326,-!p1@HEYL!0.87!6.37!HEYL;;chr2:177001290..177001315,+!p1@HOXD3!0.87!6.37!HOXD3;;chr6:34204642..34204664,+!p2@HMGA1!0.86!898.33!HMGA1;;chr1:204042233..204042249,+!p1@SOX13!0.86!41.87!SOX13;;chr12:2986206..2986258,-!p2@FOXM1!0.86!40.05!FOXM1;;chr15:37391588..37391604,-!p11@MEIS2!0.86!8.19!MEIS2;;chr19:3359591..3359667,+!p2@NFIC!0.85!73.72!NFIC;;chr11:47279504..47279563,+!p1@NR1H3!0.85!14.56!NR1H3;;chr17:41623075..41623101,-!p9@ETV4!0.85!7.28!ETV4;;chr12:53614115..53614154,-!p1@RARG!0.84!33.68!RARG;;chr22:42229246..42229270,+!p2@SREBF2!0.83!78.27!SREBF2;;chr10:114710244..114710257,+!p3@TCF7L2!0.83!16.38!TCF7L2;;chr3:126076264..126076305,-!p2@KLF15!0.83!8.19!KLF15;;chr19:13106214..13106382,+!p1@NFIX!0.82!139.25!NFIX;;chr15:96874063..96874074,+!p10@NR2F2!0.82!10.92!NR2F2;;chr2:239756739..239756755,+!p2@TWIST2!0.82!10.01!TWIST2;;chr6:45390002..45390023,+!p6@RUNX2!0.82!10.01!RUNX2;;chr1:8484294..8484307,-!p16@RERE!0.82!9.10!RERE;;chr8:128748308..128748324,+!p2@MYC!0.81!164.74!MYC;;chr7:100076723..100076737,-!p3@TSC22D4!0.81!9.10!TSC22D4;;chr2:176987441..176987454,+!p1@HOXD9!0.81!5.46!HOXD9;;chr17:46132044..46132080,+!p4@NFE2L1!0.81!5.46!NFE2L1;;chr17:46671504..46671541,-!p2@HOXB5!0.81!5.46!HOXB5;;chr17:46675469..46675481,-!p4@HOXB6!0.81!5.46!HOXB6;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.46!GATA6;;chr10:131762504..131762555,-!p1@EBF3!0.81!5.46!EBF3;;chr12:54394059..54394088,+!p3@HOXC9!0.81!5.46!HOXC9;;chr14:29234581..29234601,+!p2@FOXG1!0.81!5.46!FOXG1;;chr8:37553261..37553282,+!p2@ZNF703!0.80!43.69!ZNF703;;chr17:1958388..1958404,+!p1@HIC1!0.79!35.50!HIC1;;chr17:41623692..41623715,-!p1@ETV4!0.79!23.66!ETV4;;chr15:96869114..96869160,+!p11@NR2F2!0.79!7.28!NR2F2;;chr14:75894714..75894733,+!p1@JDP2!0.78!156.55!JDP2;;chr3:185826855..185826911,-!p1@ETV5!0.78!151.09!ETV5;;chr1:8585945..8586056,-!p3@RERE!0.78!18.20!RERE;;chr6:45390025..45390076,+!p2@RUNX2!0.78!12.74!RUNX2;;chr15:96874216..96874236,+!p13@NR2F2!0.78!8.19!NR2F2;;chr12:54447599..54447630,+!p3@HOXC4!0.78!6.37!HOXC4;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.77!53.70!GLIS2;;chr15:96876966..96877017,+!p12@NR2F2!0.77!7.28!NR2F2;;chr17:7387524..7387597,-!p1@ZBTB4!0.76!50.06!ZBTB4;;chr9:35732647..35732678,+!p2@CREB3!0.75!28.22!CREB3;;chr1:8484142..8484232,-!p10@RERE!0.75!13.65!RERE;;chr8:72756063..72756125,-!p1@MSC!0.75!10.01!MSC;;chr21:36260773..36260804,-!p7@RUNX1!0.75!6.37!RUNX1;;chr5:92920456..92920488,+!p9@NR2F1!0.75!5.46!NR2F1;;chr8:37553292..37553317,+!p1@ZNF703!0.74!118.32!ZNF703;;chr1:221052840..221052875,+!p4@HLX!0.74!5.46!HLX;;chr5:92920719..92920744,+!p17@NR2F1,p31@NR2F2!0.74!4.55!NR2F1;;chr7:15726243..15726293,-!p2@MEOX2!0.74!4.55!MEOX2;;chr7:27205106..27205134,-!p2@HOXA9!0.74!4.55!HOXA9;;chr11:125034605..125034636,+!p2@PKNOX2!0.74!4.55!PKNOX2;;chr11:65668011..65668020,-!p3@FOSL1!0.74!4.55!FOSL1;;chr14:29235961..29236008,+!p1@FOXG1!0.74!4.55!FOXG1;;chr17:46692318..46692362,-!p5@HOXB8!0.74!4.55!HOXB8;;chr6:34204973..34204990,+!p4@HMGA1!0.73!65.53!HMGA1;;chr2:239756671..239756732,+!p1@TWIST2!0.73!15.47!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!0.73!12.74!HMGA2;;chr18:19749517..19749531,+!p3@GATA6!0.73!8.19!GATA6;;chr19:13134457..13134462,+!p5@NFIX!0.73!8.19!NFIX;;chr1:221052776..221052799,+!p1@HLX!0.72!8.19!HLX;;chr1:8483849..8483868,-!p14@RERE!0.72!7.28!RERE;;chr11:113930425..113930471,+!p1@ZBTB16!0.72!6.37!ZBTB16;;chr3:126076242..126076257,-!p1@KLF15!0.72!5.46!KLF15;;chr20:39946361..39946379,-!p2@ZHX3!0.71!13.65!ZHX3;;chr19:19516507..19516539,+!p7@GATAD2A!0.71!13.65!GATAD2A;;chr8:106330656..106330684,+!p1@ZFPM2!0.71!11.83!ZFPM2;;chr6:42419290..42419314,-!p5@TRERF1!0.71!5.46!TRERF1;;chr7:100076744..100076749,-!p8@TSC22D4!0.71!4.55!TSC22D4;;chr6:31126291..31126399,+!p1@TCF19!0.70!42.78!TCF19;;chr17:46622440..46622477,-!p5@HOXB2!0.70!4.55!HOXB2;;chr11:65430586..65430593,-!p5@RELA!0.70!4.55!RELA;;chr3:187463248..187463264,-!p1@BCL6!0.69!94.66!BCL6;;chr12:77459306..77459365,-!p1@E2F7!0.69!55.52!E2F7;;chr3:185826764..185826803,-!p2@ETV5!0.69!16.38!ETV5;;chr17:38498594..38498661,+!p2@RARA!0.69!14.56!RARA;;chr15:83953397..83953425,-!p1@BNC1!0.69!4.55!BNC1;;chr11:47279248..47279264,+!p3@NR1H3!0.69!4.55!NR1H3;;chr8:128748470..128748487,+!p1@MYC!0.68!479.66!MYC;;chrX:47509928..47509990,-!p1@ELK1!0.68!134.70!ELK1;;chr15:37390482..37390572,-!p7@MEIS2!0.68!5.46!MEIS2;;chr15:96869222..96869251,+!p18@NR2F2!0.68!4.55!NR2F2;;chr15:96869255..96869291,+!p6@NR2F2!0.67!7.28!NR2F2;;chr15:80843484..80843499,+!p5@ARNT2!0.67!3.64!ARNT2;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.64!ZNF668;;chr17:41623716..41623727,-!p12@ETV4!0.67!3.64!ETV4;;chr17:46659728..46659749,-!p3@HOXB3!0.67!3.64!HOXB3;;chr17:46667628..46667642,-!p2@HOXB3!0.67!3.64!HOXB3;;chr17:46675586..46675600,-!p6@HOXB6!0.67!3.64!HOXB6;;chr17:46691732..46691766,-!p4@HOXB8!0.67!3.64!HOXB8;;chr17:46692624..46692659,-!p3@HOXB8!0.67!3.64!HOXB8;;chr17:59477403..59477414,+!p4@TBX2!0.67!3.64!TBX2;;chr18:19749504..19749515,+!p5@GATA6!0.67!3.64!GATA6;;chr12:54378864..54378884,+!p6@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|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.06!113.77!HOXC5;;chr11:46299199..46299233,+!p1@CREB3L1!1.77!284.88!CREB3L1;;chr5:92918919..92918942,+!p1@NR2F1!1.76!243.01!NR2F1;;chr12:54402745..54402788,+!p1@HOXC8!1.69!48.24!HOXC8;;chr16:86544113..86544145,+!p1@FOXF1!1.64!52.79!FOXF1;;chr6:134210243..134210257,+!p1@TCF21!1.60!39.14!TCF21;;chr9:77112244..77112262,+!p1@RORB!1.56!39.14!RORB;;chr11:46299539..46299620,+!p2@CREB3L1!1.53!54.61!CREB3L1;;chr18:19749541..19749557,+!p1@GATA6!1.52!97.39!GATA6;;chr20:42543441..42543497,+!p1@TOX2!1.48!125.60!TOX2;;chr12:54378923..54378966,+!p1@HOXC10!1.48!29.13!HOXC10;;chr4:174451370..174451387,-!p1@HAND2!1.45!27.30!HAND2;;chr6:34204921..34204939,+!p3@HMGA1!1.40!690.81!HMGA1;;chr17:46682321..46682362,-!p1@HOXB6!1.38!22.75!HOXB6;;chr15:96874012..96874042,+!p2@NR2F2!1.37!193.86!NR2F2;;chr17:41622765..41622821,-!p2@ETV4!1.37!33.68!ETV4;;chr8:49833948..49833973,-!p2@SNAI2!1.36!134.70!SNAI2;;chr19:46801639..46801699,+!p1@HIF3A!1.36!21.84!HIF3A;;chr20:42543506..42543549,+!p2@TOX2!1.35!50.06!TOX2;;chr12:54380404..54380433,+!p3@HOXC10!1.34!20.93!HOXC10;;chr4:174450089..174450153,-!p2@HAND2!1.34!20.93!HAND2;;chr18:19749386..19749404,+!p2@GATA6!1.33!29.13!GATA6;;chr19:45261550..45261641,+!p6@BCL3!1.31!31.86!BCL3;;chr5:137801160..137801176,+!p1@EGR1!1.28!1738.41!EGR1;;chr12:54380036..54380091,+!p4@HOXC10!1.26!17.29!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!1.26!17.29!HOXC9;;chr15:96873984..96873999,+!p3@NR2F2!1.24!119.23!NR2F2;;chr5:92918768..92918783,+!p8@NR2F1!1.24!16.38!NR2F1;;chr11:46299186..46299195,+!p3@CREB3L1!1.22!17.29!CREB3L1;;chr2:19558373..19558392,-!p1@OSR1!1.21!40.96!OSR1;;chr19:50432453..50432468,+!p1@ATF5!1.20!809.13!ATF5;;chr17:46675420..46675465,-!p3@HOXB6!1.20!17.29!HOXB6;;chr2:121493425..121493474,+!p1@GLI2!1.19!31.86!GLI2;;chr2:176994408..176994492,+!p1@HOXD8!1.19!14.56!HOXD8;;chr15:67430351..67430366,+!p10@SMAD3!1.19!14.56!SMAD3;;chr17:41622925..41622976,-!p3@ETV4!1.18!20.93!ETV4;;chr15:96874145..96874166,+!p7@NR2F2!1.17!26.39!NR2F2;;chr7:27205136..27205164,-!p1@HOXA9!1.17!13.65!HOXA9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.14!12.74!HOXC5;;chr15:96873921..96873946,+!p1@NR2F2!1.13!344.95!NR2F2;;chr15:96874244..96874259,+!p5@NR2F2!1.13!30.04!NR2F2;;chr5:92919068..92919082,+!p5@NR2F1!1.12!14.56!NR2F1;;chr12:54379029..54379057,+!p2@HOXC10!1.11!11.83!HOXC10;;chr2:119604456..119604501,-!p2@EN1!1.11!11.83!EN1;;chr8:49833978..49833996,-!p1@SNAI2!1.10!240.28!SNAI2;;chr8:22550982..22550999,-!p1@EGR3!1.10!32.77!EGR3;;chr11:65686802..65686818,+!p6@DRAP1!1.08!19.11!DRAP1;;chr10:101292684..101292706,+!p1@NKX2-3!1.08!10.92!NKX2-3;;chr11:65686732..65686756,+!p2@DRAP1!1.07!45.51!DRAP1;;chr19:45260775..45260838,+!p5@BCL3!1.06!13.65!BCL3;;chr1:8483878..8483907,-!p4@RERE!1.05!40.05!RERE;;chr6:34204672..34204692,+!p1@HMGA1!1.04!1122.23!HMGA1;;chr5:92918894..92918912,+!p2@NR2F1!1.04!32.77!NR2F1;;chr15:37390850..37390909,-!p3@MEIS2!1.04!20.02!MEIS2;;chr8:25902876..25902936,-!p1@EBF2!1.04!10.01!EBF2;;chr12:54410948..54410992,+!p3@HOXC5!1.04!10.01!HOXC5;;chr11:65667846..65667868,-!p1@FOSL1!1.03!258.49!FOSL1;;chr17:46622070..46622109,-!p1@HOXB2!1.03!21.84!HOXB2;;chr15:96874927..96874938,+!p8@NR2F2!1.03!20.93!NR2F2;;chr17:46687959..46688007,-!p2@HOXB7!1.03!13.65!HOXB7;;chr17:41623009..41623053,-!p4@ETV4!1.02!15.47!ETV4;;chr17:1959369..1959388,+!p2@HIC1!1.01!24.57!HIC1;;chr5:92919100..92919135,+!p3@NR2F1!1.00!10.92!NR2F1;;chr7:27196267..27196311,-!p1@HOXA7!1.00!9.10!HOXA7;;chr11:46299443..46299459,+!p4@CREB3L1!1.00!9.10!CREB3L1;;chr12:54378984..54378996,+!p7@HOXC10!1.00!9.10!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!1.00!9.10!HOXC8;;chr12:54422217..54422239,+!p3@HOXC6!1.00!9.10!HOXC6;;chr11:61520075..61520136,+!p1@C11orf9!0.99!19.11!C11orf9;;chr17:41622834..41622883,-!p6@ETV4!0.96!10.01!ETV4;;chr17:41622731..41622764,-!p5@ETV4!0.96!8.19!ETV4;;chr12:54380112..54380126,+!p5@HOXC10!0.96!8.19!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.96!8.19!HOXC8;;chr15:96873861..96873872,+!p9@NR2F2!0.94!16.38!NR2F2;;chr10:8096631..8096660,+!p1@GATA3!0.93!9.10!GATA3;;chr12:54394309..54394336,+!p2@HOXC9!0.92!7.28!HOXC9;;chr17:46675558..46675577,-!p2@HOXB6!0.92!7.28!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.92!7.28!HOXB8;;chr17:46703687..46703740,-!p1@HOXB9!0.92!7.28!HOXB9;;chr12:115121962..115121987,-!p1@TBX3!0.91!62.80!TBX3;;chr7:42276787..42276815,-!p1@GLI3!0.90!19.11!GLI3;;chr17:46622205..46622218,-!p3@HOXB2!0.90!8.19!HOXB2;;chr21:47063625..47063658,+!p1@PCBP3!0.89!30.95!PCBP3;;chr9:130954041..130954121,-!p2@CIZ1!0.89!30.95!CIZ1;;chr12:124873357..124873401,-!p1@NCOR2!0.88!80.09!NCOR2;;chr19:3366625..3366629,+!p4@NFIC!0.88!10.01!NFIC;;chr5:92918860..92918871,+!p10@NR2F1!0.88!7.28!NR2F1;;chr5:92918956..92918969,+!p4@NR2F1!0.88!7.28!NR2F1;;chr19:3366570..3366619,+!p1@NFIC!0.87!215.71!NFIC;;chr11:65687362..65687436,+!p3@DRAP1!0.87!30.95!DRAP1;;chr17:46621937..46621966,-!p2@HOXB2!0.87!18.20!HOXB2;;chr12:54379136..54379150,+!p4@HOXC5!0.87!6.37!HOXC5;;chr1:40105299..40105326,-!p1@HEYL!0.87!6.37!HEYL;;chr2:177001290..177001315,+!p1@HOXD3!0.87!6.37!HOXD3;;chr6:34204642..34204664,+!p2@HMGA1!0.86!898.33!HMGA1;;chr1:204042233..204042249,+!p1@SOX13!0.86!41.87!SOX13;;chr12:2986206..2986258,-!p2@FOXM1!0.86!40.05!FOXM1;;chr15:37391588..37391604,-!p11@MEIS2!0.86!8.19!MEIS2;;chr19:3359591..3359667,+!p2@NFIC!0.85!73.72!NFIC;;chr11:47279504..47279563,+!p1@NR1H3!0.85!14.56!NR1H3;;chr17:41623075..41623101,-!p9@ETV4!0.85!7.28!ETV4;;chr12:53614115..53614154,-!p1@RARG!0.84!33.68!RARG;;chr22:42229246..42229270,+!p2@SREBF2!0.83!78.27!SREBF2;;chr10:114710244..114710257,+!p3@TCF7L2!0.83!16.38!TCF7L2;;chr3:126076264..126076305,-!p2@KLF15!0.83!8.19!KLF15;;chr19:13106214..13106382,+!p1@NFIX!0.82!139.25!NFIX;;chr15:96874063..96874074,+!p10@NR2F2!0.82!10.92!NR2F2;;chr2:239756739..239756755,+!p2@TWIST2!0.82!10.01!TWIST2;;chr6:45390002..45390023,+!p6@RUNX2!0.82!10.01!RUNX2;;chr1:8484294..8484307,-!p16@RERE!0.82!9.10!RERE;;chr8:128748308..128748324,+!p2@MYC!0.81!164.74!MYC;;chr7:100076723..100076737,-!p3@TSC22D4!0.81!9.10!TSC22D4;;chr2:176987441..176987454,+!p1@HOXD9!0.81!5.46!HOXD9;;chr17:46132044..46132080,+!p4@NFE2L1!0.81!5.46!NFE2L1;;chr17:46671504..46671541,-!p2@HOXB5!0.81!5.46!HOXB5;;chr17:46675469..46675481,-!p4@HOXB6!0.81!5.46!HOXB6;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.46!GATA6;;chr10:131762504..131762555,-!p1@EBF3!0.81!5.46!EBF3;;chr12:54394059..54394088,+!p3@HOXC9!0.81!5.46!HOXC9;;chr14:29234581..29234601,+!p2@FOXG1!0.81!5.46!FOXG1;;chr8:37553261..37553282,+!p2@ZNF703!0.80!43.69!ZNF703;;chr17:1958388..1958404,+!p1@HIC1!0.79!35.50!HIC1;;chr17:41623692..41623715,-!p1@ETV4!0.79!23.66!ETV4;;chr15:96869114..96869160,+!p11@NR2F2!0.79!7.28!NR2F2;;chr14:75894714..75894733,+!p1@JDP2!0.78!156.55!JDP2;;chr3:185826855..185826911,-!p1@ETV5!0.78!151.09!ETV5;;chr1:8585945..8586056,-!p3@RERE!0.78!18.20!RERE;;chr6:45390025..45390076,+!p2@RUNX2!0.78!12.74!RUNX2;;chr15:96874216..96874236,+!p13@NR2F2!0.78!8.19!NR2F2;;chr12:54447599..54447630,+!p3@HOXC4!0.78!6.37!HOXC4;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.77!53.70!GLIS2;;chr15:96876966..96877017,+!p12@NR2F2!0.77!7.28!NR2F2;;chr17:7387524..7387597,-!p1@ZBTB4!0.76!50.06!ZBTB4;;chr9:35732647..35732678,+!p2@CREB3!0.75!28.22!CREB3;;chr1:8484142..8484232,-!p10@RERE!0.75!13.65!RERE;;chr8:72756063..72756125,-!p1@MSC!0.75!10.01!MSC;;chr21:36260773..36260804,-!p7@RUNX1!0.75!6.37!RUNX1;;chr5:92920456..92920488,+!p9@NR2F1!0.75!5.46!NR2F1;;chr8:37553292..37553317,+!p1@ZNF703!0.74!118.32!ZNF703;;chr1:221052840..221052875,+!p4@HLX!0.74!5.46!HLX;;chr5:92920719..92920744,+!p17@NR2F1,p31@NR2F2!0.74!4.55!NR2F1;;chr7:15726243..15726293,-!p2@MEOX2!0.74!4.55!MEOX2;;chr7:27205106..27205134,-!p2@HOXA9!0.74!4.55!HOXA9;;chr11:125034605..125034636,+!p2@PKNOX2!0.74!4.55!PKNOX2;;chr11:65668011..65668020,-!p3@FOSL1!0.74!4.55!FOSL1;;chr14:29235961..29236008,+!p1@FOXG1!0.74!4.55!FOXG1;;chr17:46692318..46692362,-!p5@HOXB8!0.74!4.55!HOXB8;;chr6:34204973..34204990,+!p4@HMGA1!0.73!65.53!HMGA1;;chr2:239756671..239756732,+!p1@TWIST2!0.73!15.47!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!0.73!12.74!HMGA2;;chr18:19749517..19749531,+!p3@GATA6!0.73!8.19!GATA6;;chr19:13134457..13134462,+!p5@NFIX!0.73!8.19!NFIX;;chr1:221052776..221052799,+!p1@HLX!0.72!8.19!HLX;;chr1:8483849..8483868,-!p14@RERE!0.72!7.28!RERE;;chr11:113930425..113930471,+!p1@ZBTB16!0.72!6.37!ZBTB16;;chr3:126076242..126076257,-!p1@KLF15!0.72!5.46!KLF15;;chr20:39946361..39946379,-!p2@ZHX3!0.71!13.65!ZHX3;;chr19:19516507..19516539,+!p7@GATAD2A!0.71!13.65!GATAD2A;;chr8:106330656..106330684,+!p1@ZFPM2!0.71!11.83!ZFPM2;;chr6:42419290..42419314,-!p5@TRERF1!0.71!5.46!TRERF1;;chr7:100076744..100076749,-!p8@TSC22D4!0.71!4.55!TSC22D4;;chr6:31126291..31126399,+!p1@TCF19!0.70!42.78!TCF19;;chr17:46622440..46622477,-!p5@HOXB2!0.70!4.55!HOXB2;;chr11:65430586..65430593,-!p5@RELA!0.70!4.55!RELA;;chr3:187463248..187463264,-!p1@BCL6!0.69!94.66!BCL6;;chr12:77459306..77459365,-!p1@E2F7!0.69!55.52!E2F7;;chr3:185826764..185826803,-!p2@ETV5!0.69!16.38!ETV5;;chr17:38498594..38498661,+!p2@RARA!0.69!14.56!RARA;;chr15:83953397..83953425,-!p1@BNC1!0.69!4.55!BNC1;;chr11:47279248..47279264,+!p3@NR1H3!0.69!4.55!NR1H3;;chr8:128748470..128748487,+!p1@MYC!0.68!479.66!MYC;;chrX:47509928..47509990,-!p1@ELK1!0.68!134.70!ELK1;;chr15:37390482..37390572,-!p7@MEIS2!0.68!5.46!MEIS2;;chr15:96869222..96869251,+!p18@NR2F2!0.68!4.55!NR2F2;;chr15:96869255..96869291,+!p6@NR2F2!0.67!7.28!NR2F2;;chr15:80843484..80843499,+!p5@ARNT2!0.67!3.64!ARNT2;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.64!ZNF668;;chr17:41623716..41623727,-!p12@ETV4!0.67!3.64!ETV4;;chr17:46659728..46659749,-!p3@HOXB3!0.67!3.64!HOXB3;;chr17:46667628..46667642,-!p2@HOXB3!0.67!3.64!HOXB3;;chr17:46675586..46675600,-!p6@HOXB6!0.67!3.64!HOXB6;;chr17:46691732..46691766,-!p4@HOXB8!0.67!3.64!HOXB8;;chr17:46692624..46692659,-!p3@HOXB8!0.67!3.64!HOXB8;;chr17:59477403..59477414,+!p4@TBX2!0.67!3.64!TBX2;;chr18:19749504..19749515,+!p5@GATA6!0.67!3.64!GATA6;;chr12:54378864..54378884,+!p6@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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002554;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001473;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor1.CNhs11322.11506-119G3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor1.CNhs11322.11506-119G3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor1.CNhs11322.11506-119G3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor1.CNhs11322.11506-119G3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor1.CNhs11322.11506-119G3.hg38.nobarcode.ctss.bed.gz
|id=FF:11506-119G3
|id=FF:11506-119G3
|is_a=EFO:0002091;;FF:0000002;;FF:0000065;;FF:0000210
|is_a=EFO:0002091;;FF:0000065
|is_obsolete=
|library_id=CNhs11322
|library_id_phase_based=2:CNhs11322
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11506
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.ACAGTG.11506
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11506
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.ACAGTG.11506
|name=Fibroblast - Lymphatic, donor1
|name=Fibroblast - Lymphatic, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11322,LSID767,release009,COMPLETED
|profile_hcage=CNhs11322,LSID767,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10005,,,
|profile_srnaseq=SRhi10005,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=119
|rna_box=119
|rna_catalog_number=SC2535
|rna_catalog_number=SC2535
Line 56: Line 82:
|rna_tube_id=119G3
|rna_tube_id=119G3
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10005.ACAGTG
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 69: Line 97:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.45733982232707e-222!GO:0005737;cytoplasm;5.59458542271013e-174!GO:0043226;organelle;4.60061755658175e-147!GO:0043229;intracellular organelle;8.64730272701572e-147!GO:0043231;intracellular membrane-bound organelle;4.1076864767566e-146!GO:0043227;membrane-bound organelle;7.5390524174395e-146!GO:0044444;cytoplasmic part;9.60039665314392e-128!GO:0044422;organelle part;8.94449477293269e-120!GO:0044446;intracellular organelle part;1.24879516643942e-118!GO:0032991;macromolecular complex;2.11657835061079e-71!GO:0005515;protein binding;2.86015153737957e-70!GO:0030529;ribonucleoprotein complex;4.67135138200482e-67!GO:0005739;mitochondrion;6.54678119616963e-66!GO:0044237;cellular metabolic process;6.22488579061675e-65!GO:0044238;primary metabolic process;2.96496746638295e-64!GO:0043233;organelle lumen;1.40988132822117e-57!GO:0031974;membrane-enclosed lumen;1.40988132822117e-57!GO:0043170;macromolecule metabolic process;1.07129593030294e-53!GO:0031090;organelle membrane;1.38907472939297e-49!GO:0044428;nuclear part;3.59974228655061e-49!GO:0003723;RNA binding;2.13229085427106e-47!GO:0044429;mitochondrial part;1.03629696129968e-44!GO:0005840;ribosome;2.27465172032376e-44!GO:0005634;nucleus;9.96902745819981e-44!GO:0009058;biosynthetic process;2.46279820913449e-42!GO:0006412;translation;9.93484733994121e-41!GO:0019538;protein metabolic process;8.04347464847987e-40!GO:0003735;structural constituent of ribosome;2.36799630396364e-39!GO:0016043;cellular component organization and biogenesis;1.20853675910288e-38!GO:0044249;cellular biosynthetic process;2.31362906993038e-38!GO:0031967;organelle envelope;1.28832293673533e-35!GO:0031975;envelope;2.72031090100006e-35!GO:0009059;macromolecule biosynthetic process;8.08582455065973e-35!GO:0044260;cellular macromolecule metabolic process;1.08558404174158e-34!GO:0043234;protein complex;2.61492637437695e-34!GO:0044267;cellular protein metabolic process;2.00649971961636e-33!GO:0033279;ribosomal subunit;2.23046904049574e-33!GO:0005829;cytosol;2.85841140945262e-32!GO:0006396;RNA processing;1.23430147231249e-31!GO:0031981;nuclear lumen;6.20161406803436e-31!GO:0015031;protein transport;1.05503802484616e-30!GO:0005740;mitochondrial envelope;5.58782433984534e-30!GO:0033036;macromolecule localization;8.77208100717703e-30!GO:0045184;establishment of protein localization;3.67660678012133e-28!GO:0031966;mitochondrial membrane;3.97897174433433e-28!GO:0008104;protein localization;1.51921537224112e-27!GO:0006996;organelle organization and biogenesis;1.08702545682997e-26!GO:0019866;organelle inner membrane;3.00633004834077e-25!GO:0065003;macromolecular complex assembly;4.43306244461204e-25!GO:0016071;mRNA metabolic process;5.99750556605735e-25!GO:0046907;intracellular transport;1.10302288366326e-24!GO:0043228;non-membrane-bound organelle;1.45702614139164e-24!GO:0043232;intracellular non-membrane-bound organelle;1.45702614139164e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.72862701090545e-24!GO:0005743;mitochondrial inner membrane;2.68680743466516e-24!GO:0043283;biopolymer metabolic process;3.93655157487238e-24!GO:0022607;cellular component assembly;1.01374926204798e-22!GO:0005783;endoplasmic reticulum;3.56481316698985e-22!GO:0010467;gene expression;3.5762082582799e-22!GO:0008380;RNA splicing;5.58422171484282e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.49059866220109e-21!GO:0006886;intracellular protein transport;5.93144413535194e-21!GO:0006397;mRNA processing;1.60474449605281e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.25888299210595e-20!GO:0006259;DNA metabolic process;4.71431047089077e-20!GO:0044445;cytosolic part;6.67522629296255e-20!GO:0012505;endomembrane system;7.47397380569324e-20!GO:0044432;endoplasmic reticulum part;2.07833329682061e-19!GO:0005654;nucleoplasm;8.85818183502532e-19!GO:0006119;oxidative phosphorylation;1.97118580986093e-18!GO:0015934;large ribosomal subunit;2.68497642449485e-18!GO:0031980;mitochondrial lumen;6.45303780509372e-18!GO:0005759;mitochondrial matrix;6.45303780509372e-18!GO:0051186;cofactor metabolic process;1.69165996194554e-17!GO:0007049;cell cycle;6.75160967161092e-17!GO:0008134;transcription factor binding;2.14394328976692e-16!GO:0044455;mitochondrial membrane part;2.42319316623437e-16!GO:0048770;pigment granule;2.66259002738143e-16!GO:0042470;melanosome;2.66259002738143e-16!GO:0044451;nucleoplasm part;3.21150985748602e-16!GO:0005681;spliceosome;4.5128377264135e-16!GO:0015935;small ribosomal subunit;8.82817416507638e-16!GO:0006457;protein folding;2.45363406344279e-15!GO:0051649;establishment of cellular localization;3.33006178759192e-15!GO:0051641;cellular localization;4.23928151637906e-15!GO:0016874;ligase activity;2.55155790410537e-14!GO:0000166;nucleotide binding;2.59065244876178e-14!GO:0005794;Golgi apparatus;5.06436415397398e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.99597654540817e-14!GO:0005746;mitochondrial respiratory chain;1.01893203300611e-13!GO:0005789;endoplasmic reticulum membrane;1.28884979085769e-13!GO:0022402;cell cycle process;1.63730717304775e-13!GO:0044248;cellular catabolic process;1.73989405051545e-13!GO:0016462;pyrophosphatase activity;2.04914087310663e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;2.36537624071269e-13!GO:0017111;nucleoside-triphosphatase activity;2.42434105678884e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.427201430782e-13!GO:0006732;coenzyme metabolic process;5.1738799377732e-13!GO:0005730;nucleolus;6.84741989539204e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.09449870022588e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.53321153596885e-12!GO:0044265;cellular macromolecule catabolic process;2.65815319602467e-12!GO:0050136;NADH dehydrogenase (quinone) activity;3.37507581530131e-12!GO:0003954;NADH dehydrogenase activity;3.37507581530131e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.37507581530131e-12!GO:0005761;mitochondrial ribosome;7.09781651083509e-12!GO:0000313;organellar ribosome;7.09781651083509e-12!GO:0000502;proteasome complex (sensu Eukaryota);7.81659757188915e-12!GO:0000278;mitotic cell cycle;8.96402726923027e-12!GO:0003712;transcription cofactor activity;9.21903607102791e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.77467183135779e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.04376777267451e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.75109104108886e-11!GO:0042773;ATP synthesis coupled electron transport;2.75109104108886e-11!GO:0051082;unfolded protein binding;3.05247402194425e-11!GO:0012501;programmed cell death;5.30071741975762e-11!GO:0022618;protein-RNA complex assembly;5.44118053683764e-11!GO:0005793;ER-Golgi intermediate compartment;5.72348028869068e-11!GO:0043285;biopolymer catabolic process;7.80457144290959e-11!GO:0006915;apoptosis;8.64296423673282e-11!GO:0048193;Golgi vesicle transport;9.74667539694202e-11!GO:0009057;macromolecule catabolic process;9.89705269131895e-11!GO:0030964;NADH dehydrogenase complex (quinone);9.98566029005923e-11!GO:0045271;respiratory chain complex I;9.98566029005923e-11!GO:0005747;mitochondrial respiratory chain complex I;9.98566029005923e-11!GO:0006605;protein targeting;1.52995030219812e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.34632010783201e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.61720301007693e-10!GO:0008135;translation factor activity, nucleic acid binding;3.49724218788576e-10!GO:0044257;cellular protein catabolic process;4.35569083138011e-10!GO:0019941;modification-dependent protein catabolic process;4.35569083138011e-10!GO:0043632;modification-dependent macromolecule catabolic process;4.35569083138011e-10!GO:0051276;chromosome organization and biogenesis;4.40790683116836e-10!GO:0008219;cell death;4.94292360052395e-10!GO:0016265;death;4.94292360052395e-10!GO:0006511;ubiquitin-dependent protein catabolic process;6.12580264131792e-10!GO:0016192;vesicle-mediated transport;6.51833625203641e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;6.51833625203641e-10!GO:0006512;ubiquitin cycle;7.38037982813149e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;9.1838795431846e-10!GO:0000375;RNA splicing, via transesterification reactions;9.1838795431846e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.1838795431846e-10!GO:0006366;transcription from RNA polymerase II promoter;9.59010084089969e-10!GO:0048523;negative regulation of cellular process;9.7859921579152e-10!GO:0017076;purine nucleotide binding;1.00490655305793e-09!GO:0032553;ribonucleotide binding;1.07397943842031e-09!GO:0032555;purine ribonucleotide binding;1.07397943842031e-09!GO:0043412;biopolymer modification;1.19401786853774e-09!GO:0006323;DNA packaging;2.81075258721645e-09!GO:0016491;oxidoreductase activity;3.3368906629927e-09!GO:0042254;ribosome biogenesis and assembly;3.43788891960657e-09!GO:0009055;electron carrier activity;3.48151714162485e-09!GO:0009259;ribonucleotide metabolic process;4.08060988366291e-09!GO:0051188;cofactor biosynthetic process;4.31875175578004e-09!GO:0000074;regulation of progression through cell cycle;4.31875175578004e-09!GO:0051726;regulation of cell cycle;4.46303610734081e-09!GO:0006163;purine nucleotide metabolic process;5.00227261962226e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.33462433035347e-09!GO:0009150;purine ribonucleotide metabolic process;8.60593189867552e-09!GO:0030163;protein catabolic process;1.05264992939675e-08!GO:0022403;cell cycle phase;1.3372777117709e-08!GO:0006464;protein modification process;1.89711681938451e-08!GO:0044427;chromosomal part;2.10493342925584e-08!GO:0005524;ATP binding;2.7137994491693e-08!GO:0006461;protein complex assembly;3.00692262923187e-08!GO:0048519;negative regulation of biological process;3.01540359192297e-08!GO:0006164;purine nucleotide biosynthetic process;3.55681108384198e-08!GO:0032559;adenyl ribonucleotide binding;3.79207558751844e-08!GO:0030554;adenyl nucleotide binding;4.6739708630449e-08!GO:0007067;mitosis;4.6906391811962e-08!GO:0005788;endoplasmic reticulum lumen;5.24670958509871e-08!GO:0000087;M phase of mitotic cell cycle;5.60732305645802e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.94899622456455e-08!GO:0009260;ribonucleotide biosynthetic process;5.96821553817578e-08!GO:0005694;chromosome;6.62515381194936e-08!GO:0009117;nucleotide metabolic process;7.31231197807527e-08!GO:0009056;catabolic process;7.61722631829868e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.89608647911205e-08!GO:0009199;ribonucleoside triphosphate metabolic process;8.91619523309428e-08!GO:0003743;translation initiation factor activity;1.18874957918613e-07!GO:0009141;nucleoside triphosphate metabolic process;1.24711292146705e-07!GO:0009060;aerobic respiration;1.37400381395443e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.51107928842261e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.51107928842261e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.65643633435603e-07!GO:0003714;transcription corepressor activity;1.70623328070289e-07!GO:0065004;protein-DNA complex assembly;1.82088768835388e-07!GO:0003676;nucleic acid binding;1.86738066238977e-07!GO:0006333;chromatin assembly or disassembly;2.05363642145277e-07!GO:0016740;transferase activity;2.26222197717105e-07!GO:0006974;response to DNA damage stimulus;2.5519788861523e-07!GO:0016604;nuclear body;2.61574758144159e-07!GO:0006399;tRNA metabolic process;2.86452343382522e-07!GO:0006260;DNA replication;3.45780622716506e-07!GO:0005635;nuclear envelope;3.46334213055865e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.46334213055865e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.46334213055865e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.46334213055865e-07!GO:0042981;regulation of apoptosis;4.04634837550461e-07!GO:0043067;regulation of programmed cell death;4.41348279239371e-07!GO:0016563;transcription activator activity;4.41437254543658e-07!GO:0030532;small nuclear ribonucleoprotein complex;4.83491242826906e-07!GO:0030120;vesicle coat;4.86272725605495e-07!GO:0030662;coated vesicle membrane;4.86272725605495e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.45322982607243e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.45322982607243e-07!GO:0006413;translational initiation;6.84415265431525e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.93308187015089e-07!GO:0016070;RNA metabolic process;8.03046390729471e-07!GO:0006913;nucleocytoplasmic transport;8.20613324261852e-07!GO:0015986;ATP synthesis coupled proton transport;8.47038430001379e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.47038430001379e-07!GO:0016564;transcription repressor activity;8.85264730172617e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.23558073443652e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.23558073443652e-07!GO:0006446;regulation of translational initiation;9.65441544185328e-07!GO:0043038;amino acid activation;9.65441544185328e-07!GO:0006418;tRNA aminoacylation for protein translation;9.65441544185328e-07!GO:0043039;tRNA aminoacylation;9.65441544185328e-07!GO:0045333;cellular respiration;1.00679202210949e-06!GO:0005768;endosome;1.02163405975705e-06!GO:0043687;post-translational protein modification;1.1012782167669e-06!GO:0044431;Golgi apparatus part;1.171716507598e-06!GO:0046034;ATP metabolic process;1.27979338192457e-06!GO:0051169;nuclear transport;1.4099183957305e-06!GO:0008639;small protein conjugating enzyme activity;1.43679030606747e-06!GO:0006091;generation of precursor metabolites and energy;1.44771851538003e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.45057618033262e-06!GO:0048475;coated membrane;1.65563532292374e-06!GO:0030117;membrane coat;1.65563532292374e-06!GO:0000785;chromatin;1.68030641097163e-06!GO:0006334;nucleosome assembly;1.68641487113198e-06!GO:0006099;tricarboxylic acid cycle;1.70429801477437e-06!GO:0046356;acetyl-CoA catabolic process;1.70429801477437e-06!GO:0008654;phospholipid biosynthetic process;1.83734821753431e-06!GO:0051187;cofactor catabolic process;1.83734821753431e-06!GO:0006364;rRNA processing;1.88429765592755e-06!GO:0009108;coenzyme biosynthetic process;1.88973000117802e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.91303683485471e-06!GO:0042623;ATPase activity, coupled;1.94830616469444e-06!GO:0051301;cell division;2.23429257674539e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.27503012548319e-06!GO:0031497;chromatin assembly;2.5044028819692e-06!GO:0004842;ubiquitin-protein ligase activity;2.65781806781576e-06!GO:0000279;M phase;2.83028723295967e-06!GO:0007005;mitochondrion organization and biogenesis;3.11313222585154e-06!GO:0009109;coenzyme catabolic process;3.13040154311288e-06!GO:0048522;positive regulation of cellular process;3.14256923711018e-06!GO:0043069;negative regulation of programmed cell death;3.14331830572141e-06!GO:0009719;response to endogenous stimulus;3.22749009457756e-06!GO:0019829;cation-transporting ATPase activity;3.36384500508491e-06!GO:0006084;acetyl-CoA metabolic process;3.54531635233192e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.68439643701442e-06!GO:0043066;negative regulation of apoptosis;4.0221667074676e-06!GO:0016887;ATPase activity;4.0221667074676e-06!GO:0051246;regulation of protein metabolic process;4.0221667074676e-06!GO:0016072;rRNA metabolic process;4.38262465280721e-06!GO:0016607;nuclear speck;4.96114327528063e-06!GO:0019787;small conjugating protein ligase activity;5.35766831744769e-06!GO:0008565;protein transporter activity;6.31749826393603e-06!GO:0031965;nuclear membrane;6.40559520540892e-06!GO:0016568;chromatin modification;6.47181747758615e-06!GO:0044440;endosomal part;6.74245438323081e-06!GO:0010008;endosome membrane;6.74245438323081e-06!GO:0044453;nuclear membrane part;6.80587483972558e-06!GO:0006754;ATP biosynthetic process;7.10039340267764e-06!GO:0006753;nucleoside phosphate metabolic process;7.10039340267764e-06!GO:0003924;GTPase activity;7.43723157009855e-06!GO:0045259;proton-transporting ATP synthase complex;7.93522735988927e-06!GO:0006281;DNA repair;8.53252447847375e-06!GO:0005667;transcription factor complex;1.03892183028582e-05!GO:0005773;vacuole;1.12406338450455e-05!GO:0003713;transcription coactivator activity;1.21685241479803e-05!GO:0016779;nucleotidyltransferase activity;1.22572889889043e-05!GO:0031324;negative regulation of cellular metabolic process;1.22867679797403e-05!GO:0016881;acid-amino acid ligase activity;1.27430323882534e-05!GO:0065002;intracellular protein transport across a membrane;1.50246119722922e-05!GO:0045454;cell redox homeostasis;1.58093209302428e-05!GO:0006916;anti-apoptosis;1.63083345113311e-05!GO:0044262;cellular carbohydrate metabolic process;1.77231780839809e-05!GO:0005770;late endosome;2.29317185626245e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.42834865462462e-05!GO:0045786;negative regulation of progression through cell cycle;2.46353107051154e-05!GO:0017038;protein import;2.46795426508179e-05!GO:0005762;mitochondrial large ribosomal subunit;2.66113347400965e-05!GO:0000315;organellar large ribosomal subunit;2.66113347400965e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.68447300700073e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.7985198115009e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.80224504386703e-05!GO:0000139;Golgi membrane;2.86629730133133e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.90419724980856e-05!GO:0003697;single-stranded DNA binding;2.98298910422934e-05!GO:0016049;cell growth;3.28942995433631e-05!GO:0008361;regulation of cell size;3.57182262779674e-05!GO:0031252;leading edge;3.76878167193952e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.11231692071766e-05!GO:0031988;membrane-bound vesicle;4.20381057503782e-05!GO:0050794;regulation of cellular process;4.46228177584017e-05!GO:0006752;group transfer coenzyme metabolic process;4.58832805425335e-05!GO:0015630;microtubule cytoskeleton;5.22906021977198e-05!GO:0005905;coated pit;5.6221717654805e-05!GO:0051329;interphase of mitotic cell cycle;6.31726374172389e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.46622091876599e-05!GO:0001558;regulation of cell growth;6.48787259196337e-05!GO:0000323;lytic vacuole;6.96476014365261e-05!GO:0005764;lysosome;6.96476014365261e-05!GO:0008610;lipid biosynthetic process;7.08397123084371e-05!GO:0016853;isomerase activity;7.13234577795222e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.18733846076693e-05!GO:0019899;enzyme binding;8.54365329443042e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.56771102765697e-05!GO:0046474;glycerophospholipid biosynthetic process;9.98284311804821e-05!GO:0051325;interphase;9.98284311804821e-05!GO:0051789;response to protein stimulus;9.99987891576705e-05!GO:0006986;response to unfolded protein;9.99987891576705e-05!GO:0006793;phosphorus metabolic process;0.000100806502783247!GO:0006796;phosphate metabolic process;0.000100806502783247!GO:0030176;integral to endoplasmic reticulum membrane;0.000109054117240582!GO:0033116;ER-Golgi intermediate compartment membrane;0.000118199530716228!GO:0006082;organic acid metabolic process;0.000121210059449407!GO:0005791;rough endoplasmic reticulum;0.000124723076927061!GO:0019752;carboxylic acid metabolic process;0.000131972866794182!GO:0009165;nucleotide biosynthetic process;0.000131972866794182!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000137459324562267!GO:0030867;rough endoplasmic reticulum membrane;0.000139380995450714!GO:0032446;protein modification by small protein conjugation;0.0001410675472841!GO:0009892;negative regulation of metabolic process;0.000157345847501671!GO:0048518;positive regulation of biological process;0.000172910929458359!GO:0005798;Golgi-associated vesicle;0.00018940602031398!GO:0016567;protein ubiquitination;0.000192551128526473!GO:0004298;threonine endopeptidase activity;0.000208979204247644!GO:0030029;actin filament-based process;0.000215959210990588!GO:0005813;centrosome;0.000221143186291612!GO:0008026;ATP-dependent helicase activity;0.00022145708065014!GO:0019867;outer membrane;0.000223120627106742!GO:0016126;sterol biosynthetic process;0.00022472429368106!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000242069178810296!GO:0031968;organelle outer membrane;0.000244008030869798!GO:0000245;spliceosome assembly;0.000246437406363193!GO:0005643;nuclear pore;0.000277602058198158!GO:0016787;hydrolase activity;0.000284704063237528!GO:0051427;hormone receptor binding;0.000284704063237528!GO:0016481;negative regulation of transcription;0.000309367225685213!GO:0005048;signal sequence binding;0.000309448867761758!GO:0016310;phosphorylation;0.000334870808849958!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000366715880895884!GO:0045941;positive regulation of transcription;0.000379310923315678!GO:0046467;membrane lipid biosynthetic process;0.000400634029022998!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000432244908371429!GO:0008250;oligosaccharyl transferase complex;0.000472344845508967!GO:0031982;vesicle;0.000474997118352198!GO:0031410;cytoplasmic vesicle;0.000475840865378304!GO:0007010;cytoskeleton organization and biogenesis;0.000510376173881224!GO:0046483;heterocycle metabolic process;0.000515042093607538!GO:0035257;nuclear hormone receptor binding;0.000549777119913755!GO:0000151;ubiquitin ligase complex;0.000552397544662115!GO:0046930;pore complex;0.000552397544662115!GO:0043623;cellular protein complex assembly;0.00056669955124024!GO:0006613;cotranslational protein targeting to membrane;0.000578154837874966!GO:0003899;DNA-directed RNA polymerase activity;0.000593405418433433!GO:0006979;response to oxidative stress;0.000600647785800633!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000655475327336671!GO:0004386;helicase activity;0.000665617522210854!GO:0005819;spindle;0.000687133168911528!GO:0046489;phosphoinositide biosynthetic process;0.000723809611434831!GO:0005741;mitochondrial outer membrane;0.000735807348797156!GO:0005815;microtubule organizing center;0.000760882409680635!GO:0030132;clathrin coat of coated pit;0.000863844579932203!GO:0045792;negative regulation of cell size;0.00103126873535292!GO:0045893;positive regulation of transcription, DNA-dependent;0.00110551759394426!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00111639313573396!GO:0018196;peptidyl-asparagine modification;0.00112405831439741!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00112405831439741!GO:0065009;regulation of a molecular function;0.00116925967162636!GO:0030308;negative regulation of cell growth;0.00119683936543507!GO:0043566;structure-specific DNA binding;0.00123036796056671!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0012515337968233!GO:0005769;early endosome;0.00126112903025152!GO:0007243;protein kinase cascade;0.00128163088373592!GO:0006778;porphyrin metabolic process;0.00130703202838966!GO:0033013;tetrapyrrole metabolic process;0.00130703202838966!GO:0030133;transport vesicle;0.00134042923330139!GO:0005525;GTP binding;0.00138554866460869!GO:0006520;amino acid metabolic process;0.00142005546630258!GO:0006790;sulfur metabolic process;0.00144230407268145!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00146577149163268!GO:0051170;nuclear import;0.00149388612125745!GO:0051920;peroxiredoxin activity;0.00155526428348135!GO:0016859;cis-trans isomerase activity;0.00157888920232494!GO:0009967;positive regulation of signal transduction;0.00159025085996218!GO:0050789;regulation of biological process;0.00166528042735624!GO:0006606;protein import into nucleus;0.00177539611659189!GO:0006695;cholesterol biosynthetic process;0.00180576214802984!GO:0000786;nucleosome;0.00181113544189241!GO:0042802;identical protein binding;0.00197895671949987!GO:0006403;RNA localization;0.00197895671949987!GO:0050657;nucleic acid transport;0.0021166230227563!GO:0051236;establishment of RNA localization;0.0021166230227563!GO:0050658;RNA transport;0.0021166230227563!GO:0043488;regulation of mRNA stability;0.0021944372244149!GO:0043487;regulation of RNA stability;0.0021944372244149!GO:0004576;oligosaccharyl transferase activity;0.00220746609889369!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0023046726013366!GO:0006779;porphyrin biosynthetic process;0.00257647359676992!GO:0033014;tetrapyrrole biosynthetic process;0.00257647359676992!GO:0019843;rRNA binding;0.00268733324786342!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00292487614902191!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00300438157858528!GO:0030118;clathrin coat;0.00300869563975699!GO:0000314;organellar small ribosomal subunit;0.0030107843625559!GO:0005763;mitochondrial small ribosomal subunit;0.0030107843625559!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00301961714182687!GO:0016044;membrane organization and biogenesis;0.00302212799892083!GO:0005885;Arp2/3 protein complex;0.00339940225067543!GO:0031902;late endosome membrane;0.00343233739920144!GO:0006950;response to stress;0.00343233739920144!GO:0006612;protein targeting to membrane;0.00344901278475635!GO:0006650;glycerophospholipid metabolic process;0.00374071893379601!GO:0017166;vinculin binding;0.00381797020456953!GO:0040008;regulation of growth;0.00389689036337403!GO:0006626;protein targeting to mitochondrion;0.003928416966155!GO:0006740;NADPH regeneration;0.00395107281725005!GO:0006098;pentose-phosphate shunt;0.00395107281725005!GO:0015992;proton transport;0.00400760156239783!GO:0030658;transport vesicle membrane;0.00403844940994517!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00406430915856315!GO:0051252;regulation of RNA metabolic process;0.00409824839546721!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00415280256510442!GO:0015399;primary active transmembrane transporter activity;0.00415280256510442!GO:0006818;hydrogen transport;0.00421993137094652!GO:0042168;heme metabolic process;0.00451568247550168!GO:0043681;protein import into mitochondrion;0.00455869936913811!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00455869936913811!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0048083553511252!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0048083553511252!GO:0006402;mRNA catabolic process;0.00509096922535024!GO:0045926;negative regulation of growth;0.00509849153131319!GO:0043284;biopolymer biosynthetic process;0.00511758294355258!GO:0051348;negative regulation of transferase activity;0.00511758294355258!GO:0051087;chaperone binding;0.00530740175986525!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0053961307693841!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0053961307693841!GO:0005684;U2-dependent spliceosome;0.00541694779600469!GO:0006839;mitochondrial transport;0.00553238379087225!GO:0043021;ribonucleoprotein binding;0.00563547170062547!GO:0030041;actin filament polymerization;0.00563805329956643!GO:0033673;negative regulation of kinase activity;0.00583473596888653!GO:0006469;negative regulation of protein kinase activity;0.00583473596888653!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00584099982262202!GO:0007050;cell cycle arrest;0.00591743374467842!GO:0006414;translational elongation;0.0059458015552569!GO:0048468;cell development;0.00619015327411648!GO:0006506;GPI anchor biosynthetic process;0.00619015327411648!GO:0006497;protein amino acid lipidation;0.00621825554370282!GO:0030134;ER to Golgi transport vesicle;0.00639651455105953!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00647667880932566!GO:0007006;mitochondrial membrane organization and biogenesis;0.00654051129908164!GO:0030880;RNA polymerase complex;0.00656286080074097!GO:0030659;cytoplasmic vesicle membrane;0.0065912121715672!GO:0032561;guanyl ribonucleotide binding;0.00666300337770553!GO:0019001;guanyl nucleotide binding;0.00666300337770553!GO:0035258;steroid hormone receptor binding;0.00700371274872644!GO:0006066;alcohol metabolic process;0.00717352891719359!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00717352891719359!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00717352891719359!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00717352891719359!GO:0008092;cytoskeletal protein binding;0.00743508444197275!GO:0006807;nitrogen compound metabolic process;0.00760594630059105!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00760594630059105!GO:0000082;G1/S transition of mitotic cell cycle;0.00773726933841294!GO:0005774;vacuolar membrane;0.0077988667800724!GO:0030663;COPI coated vesicle membrane;0.00789375104769755!GO:0030126;COPI vesicle coat;0.00789375104769755!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00828008234193205!GO:0016125;sterol metabolic process;0.00833004332631338!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00836033412734998!GO:0031072;heat shock protein binding;0.00859055265406151!GO:0001726;ruffle;0.00860031770835102!GO:0006783;heme biosynthetic process;0.00871275590171841!GO:0045892;negative regulation of transcription, DNA-dependent;0.00941592052954487!GO:0006769;nicotinamide metabolic process;0.00948471409559902!GO:0030127;COPII vesicle coat;0.00949056773877788!GO:0012507;ER to Golgi transport vesicle membrane;0.00949056773877788!GO:0000096;sulfur amino acid metabolic process;0.00976665789240779!GO:0030660;Golgi-associated vesicle membrane;0.0097825614953394!GO:0030137;COPI-coated vesicle;0.0098551102855093!GO:0006595;polyamine metabolic process;0.00994096483218769!GO:0008243;plasminogen activator activity;0.0100450154549173!GO:0016860;intramolecular oxidoreductase activity;0.0103123042932958!GO:0022890;inorganic cation transmembrane transporter activity;0.0103692303340255!GO:0048037;cofactor binding;0.0103738510037837!GO:0007051;spindle organization and biogenesis;0.0105730033255729!GO:0009308;amine metabolic process;0.0106664166813591!GO:0003724;RNA helicase activity;0.0107180264729587!GO:0051168;nuclear export;0.0107660724480301!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0107904624095455!GO:0044452;nucleolar part;0.0108812816008532!GO:0006739;NADP metabolic process;0.011086269873827!GO:0009112;nucleobase metabolic process;0.0111397318544379!GO:0035035;histone acetyltransferase binding;0.0111923664563109!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0112646082091645!GO:0000075;cell cycle checkpoint;0.0112807851178109!GO:0042158;lipoprotein biosynthetic process;0.0114199451729697!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0120353834600431!GO:0015002;heme-copper terminal oxidase activity;0.0120353834600431!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0120353834600431!GO:0004129;cytochrome-c oxidase activity;0.0120353834600431!GO:0006509;membrane protein ectodomain proteolysis;0.0120959398546411!GO:0033619;membrane protein proteolysis;0.0120959398546411!GO:0033559;unsaturated fatty acid metabolic process;0.0121729964570098!GO:0006636;unsaturated fatty acid biosynthetic process;0.0121729964570098!GO:0030119;AP-type membrane coat adaptor complex;0.0123215923833499!GO:0005657;replication fork;0.0127172356040465!GO:0006118;electron transport;0.0131393779300686!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0132458329095811!GO:0050662;coenzyme binding;0.0133625689360982!GO:0000209;protein polyubiquitination;0.0134499689144559!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0135537527542137!GO:0000428;DNA-directed RNA polymerase complex;0.0135537527542137!GO:0016363;nuclear matrix;0.0136420519759383!GO:0005862;muscle thin filament tropomyosin;0.0136784555482976!GO:0030384;phosphoinositide metabolic process;0.0136784555482976!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0137492161032751!GO:0008154;actin polymerization and/or depolymerization;0.0139538125779285!GO:0003702;RNA polymerase II transcription factor activity;0.0143228849318415!GO:0030125;clathrin vesicle coat;0.0149595486509787!GO:0030665;clathrin coated vesicle membrane;0.0149595486509787!GO:0043086;negative regulation of catalytic activity;0.0151996877242386!GO:0051028;mRNA transport;0.0151998767161034!GO:0006733;oxidoreduction coenzyme metabolic process;0.0155820130868685!GO:0043492;ATPase activity, coupled to movement of substances;0.0159206213152927!GO:0044437;vacuolar part;0.0159777781820607!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0164685542609932!GO:0008632;apoptotic program;0.0168471126574366!GO:0022408;negative regulation of cell-cell adhesion;0.0170058702784184!GO:0006505;GPI anchor metabolic process;0.0170058702784184!GO:0008652;amino acid biosynthetic process;0.0170058702784184!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0170793317006176!GO:0051287;NAD binding;0.0171556078698778!GO:0048487;beta-tubulin binding;0.0171942678122285!GO:0007264;small GTPase mediated signal transduction;0.0174029993532701!GO:0030433;ER-associated protein catabolic process;0.0174029993532701!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0174029993532701!GO:0030131;clathrin adaptor complex;0.0179535386184309!GO:0015036;disulfide oxidoreductase activity;0.017969066137143!GO:0031272;regulation of pseudopodium formation;0.0179946434564732!GO:0031269;pseudopodium formation;0.0179946434564732!GO:0031344;regulation of cell projection organization and biogenesis;0.0179946434564732!GO:0031268;pseudopodium organization and biogenesis;0.0179946434564732!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0179946434564732!GO:0031274;positive regulation of pseudopodium formation;0.0179946434564732!GO:0006401;RNA catabolic process;0.0186091042962194!GO:0006891;intra-Golgi vesicle-mediated transport;0.0186221224403419!GO:0032508;DNA duplex unwinding;0.0189888301635169!GO:0032392;DNA geometric change;0.0189888301635169!GO:0006767;water-soluble vitamin metabolic process;0.019173422286597!GO:0005581;collagen;0.0193563075762994!GO:0003756;protein disulfide isomerase activity;0.0193652589209097!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0193652589209097!GO:0044433;cytoplasmic vesicle part;0.0201654397341638!GO:0003682;chromatin binding;0.0204311210358148!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0205405971589659!GO:0006383;transcription from RNA polymerase III promoter;0.0206376135878106!GO:0019318;hexose metabolic process;0.020839396236142!GO:0008186;RNA-dependent ATPase activity;0.0209656441220422!GO:0005975;carbohydrate metabolic process;0.0222589249142601!GO:0030027;lamellipodium;0.0222589249142601!GO:0016741;transferase activity, transferring one-carbon groups;0.0225904199476566!GO:0008047;enzyme activator activity;0.0228208883118026!GO:0005996;monosaccharide metabolic process;0.0228208883118026!GO:0001953;negative regulation of cell-matrix adhesion;0.0228208883118026!GO:0006643;membrane lipid metabolic process;0.0231488470001746!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0232594265053163!GO:0008168;methyltransferase activity;0.0235181399025305!GO:0040029;regulation of gene expression, epigenetic;0.0235357712227323!GO:0005765;lysosomal membrane;0.0235357712227323!GO:0008283;cell proliferation;0.0238236423970943!GO:0006220;pyrimidine nucleotide metabolic process;0.0239631303770039!GO:0050790;regulation of catalytic activity;0.0242910800497583!GO:0000049;tRNA binding;0.0242910800497583!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0242910800497583!GO:0008139;nuclear localization sequence binding;0.0243614916691464!GO:0006354;RNA elongation;0.0244534498153723!GO:0008033;tRNA processing;0.0247753205218505!GO:0031529;ruffle organization and biogenesis;0.0247818441788136!GO:0006519;amino acid and derivative metabolic process;0.0248487740898052!GO:0046519;sphingoid metabolic process;0.0256334923265338!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0257327269931674!GO:0048471;perinuclear region of cytoplasm;0.0262361049139908!GO:0003684;damaged DNA binding;0.0264022198395687!GO:0045936;negative regulation of phosphate metabolic process;0.0269455986706482!GO:0019206;nucleoside kinase activity;0.0269894131662584!GO:0048500;signal recognition particle;0.027058516545248!GO:0008538;proteasome activator activity;0.0273098523170227!GO:0044255;cellular lipid metabolic process;0.0276000973781659!GO:0030508;thiol-disulfide exchange intermediate activity;0.0285379591250132!GO:0006268;DNA unwinding during replication;0.0288068767283478!GO:0051128;regulation of cellular component organization and biogenesis;0.0288334024342111!GO:0006007;glucose catabolic process;0.0290590161490715!GO:0007040;lysosome organization and biogenesis;0.0292827021980235!GO:0005096;GTPase activator activity;0.0294353528801321!GO:0006672;ceramide metabolic process;0.0295097048856813!GO:0001872;zymosan binding;0.029562642966374!GO:0001878;response to yeast;0.029562642966374!GO:0007033;vacuole organization and biogenesis;0.0295663498248101!GO:0016272;prefoldin complex;0.0299820553371452!GO:0005100;Rho GTPase activator activity;0.0300758952517298!GO:0006458;'de novo' protein folding;0.0302155745094113!GO:0051084;'de novo' posttranslational protein folding;0.0302155745094113!GO:0007346;regulation of progression through mitotic cell cycle;0.0304425175768102!GO:0007162;negative regulation of cell adhesion;0.0312447551873638!GO:0043065;positive regulation of apoptosis;0.0312447551873638!GO:0016197;endosome transport;0.0315275871309117!GO:0005869;dynactin complex;0.0322079042891338!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0323608896430418!GO:0022415;viral reproductive process;0.0324177656864721!GO:0031625;ubiquitin protein ligase binding;0.032443276145443!GO:0009303;rRNA transcription;0.0325241836987332!GO:0030145;manganese ion binding;0.0328781915326222!GO:0030521;androgen receptor signaling pathway;0.0328781915326222!GO:0009893;positive regulation of metabolic process;0.0330851861954774!GO:0008312;7S RNA binding;0.0341065647462158!GO:0031301;integral to organelle membrane;0.0341566549710189!GO:0043068;positive regulation of programmed cell death;0.0345317868705393!GO:0019798;procollagen-proline dioxygenase activity;0.0346426222544787!GO:0000030;mannosyltransferase activity;0.0346426222544787!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0349373790451327!GO:0004674;protein serine/threonine kinase activity;0.0353661194730781!GO:0047485;protein N-terminus binding;0.035629428290129!GO:0019362;pyridine nucleotide metabolic process;0.0362828053247587!GO:0009116;nucleoside metabolic process;0.0364931529260289!GO:0003711;transcription elongation regulator activity;0.0364931529260289!GO:0042157;lipoprotein metabolic process;0.0368149862146451!GO:0048660;regulation of smooth muscle cell proliferation;0.0380603464005909!GO:0006289;nucleotide-excision repair;0.0382354727960064!GO:0031543;peptidyl-proline dioxygenase activity;0.038589921492492!GO:0007021;tubulin folding;0.0388063711184133!GO:0035303;regulation of dephosphorylation;0.0390854479884539!GO:0030833;regulation of actin filament polymerization;0.0399588433083182!GO:0004004;ATP-dependent RNA helicase activity;0.0403225828679259!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0404396478348508!GO:0051052;regulation of DNA metabolic process;0.0404445750086203!GO:0043433;negative regulation of transcription factor activity;0.0406613363595956!GO:0006352;transcription initiation;0.0410728424975507!GO:0065007;biological regulation;0.041464633059456!GO:0051775;response to redox state;0.0442077187232001!GO:0006980;redox signal response;0.0442077187232001!GO:0004177;aminopeptidase activity;0.0443304990635307!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0443304990635307!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0443304990635307!GO:0003746;translation elongation factor activity;0.0443607411010894!GO:0009081;branched chain family amino acid metabolic process;0.0458096334740361!GO:0005586;collagen type III;0.0460496873928643!GO:0006984;ER-nuclear signaling pathway;0.046607532181011!GO:0007088;regulation of mitosis;0.0467752289353652!GO:0006644;phospholipid metabolic process;0.0472918923195999!GO:0012506;vesicle membrane;0.0476178319286751!GO:0035267;NuA4 histone acetyltransferase complex;0.0476178319286751!GO:0005874;microtubule;0.0491402269991394!GO:0001952;regulation of cell-matrix adhesion;0.0491402269991394
|sample_id=11506
|sample_id=11506
|sample_note=
|sample_note=
Line 76: Line 105:
|sample_tissue=lymph node
|sample_tissue=lymph node
|top_motifs=ZNF423:1.65033609099;GZF1:1.54410329772;TAL1_TCF{3,4,12}:1.43335406842;ZNF238:1.40191374392;NR3C1:1.3683362407;GLI1..3:1.35641387074;SRF:1.32989975606;HOX{A5,B5}:1.29866453414;PBX1:1.29633250874;RXRA_VDR{dimer}:1.28468435478;EBF1:1.27691024029;PAX8:1.26577647514;ZNF148:1.20904576009;HES1:1.19155096204;GTF2A1,2:1.16859453027;TFCP2:1.15866039375;NR6A1:1.09517430771;TFAP4:0.979998134688;TLX1..3_NFIC{dimer}:0.955818782222;IKZF1:0.921638973542;NANOG:0.910835469454;NR5A1,2:0.877000047253;ESR1:0.859859967221;T:0.804758704915;TEAD1:0.740798007041;GFI1B:0.732006852545;bHLH_family:0.72856657069;ESRRA:0.71984794274;LEF1_TCF7_TCF7L1,2:0.708922360616;HAND1,2:0.704513956259;AR:0.663479442379;TFAP2{A,C}:0.661593756199;RREB1:0.642976328785;MTF1:0.641864170747;TP53:0.627527577639;NFE2L2:0.626125240993;GTF2I:0.612853657407;EN1,2:0.602293533719;CRX:0.551303072379;ONECUT1,2:0.522691674062;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.519543503187;EP300:0.505833696053;MZF1:0.474546077582;GFI1:0.468450802657;HLF:0.461832977074;NR1H4:0.439677683846;SOX17:0.432242340808;NFATC1..3:0.39763343241;TFAP2B:0.393967814796;HOX{A6,A7,B6,B7}:0.390009732132;TBX4,5:0.377291126401;MAFB:0.375301018916;RXR{A,B,G}:0.357014063876;TBP:0.333022276192;STAT5{A,B}:0.331553333138;ZBTB6:0.330351884175;NANOG{mouse}:0.319635134286;BACH2:0.30596080026;SPZ1:0.294127847783;GATA6:0.287238918936;HNF4A_NR2F1,2:0.286362701692;LHX3,4:0.283158101251;HNF1A:0.279436731621;KLF4:0.27765443834;FOS_FOS{B,L1}_JUN{B,D}:0.265345674876;NKX3-1:0.261373057015;POU6F1:0.254635301967;PDX1:0.252310699617;PAX1,9:0.213426007149;POU2F1..3:0.198026590517;CEBPA,B_DDIT3:0.189115594497;STAT2,4,6:0.185957655676;XCPE1{core}:0.183158223143;HOXA9_MEIS1:0.174484961521;ATF6:0.162228243613;SOX{8,9,10}:0.158153043121;PPARG:0.147206038731;NKX2-2,8:0.13613133977;NKX2-3_NKX2-5:0.131799686802;FOXA2:0.0968067460191;PAX5:0.0876195273606;TOPORS:0.0862812313527;RUNX1..3:0.0804221146498;REST:0.0773832361367;AHR_ARNT_ARNT2:0.0683407989107;NFE2:0.0599712580075;HIC1:0.0571697900162;PRDM1:0.0482784708986;NFE2L1:0.0356400748381;NHLH1,2:0.0102424163778;NFKB1_REL_RELA:0.00578709541347;MTE{core}:0.00170664296113;FOSL2:-0.00461122664686;RFX1:-0.00828926502018;NFIL3:-0.016265562749;MEF2{A,B,C,D}:-0.0239062664794;SP1:-0.0300705369107;SMAD1..7,9:-0.0397571735185;ZIC1..3:-0.0659098478528;ETS1,2:-0.0767688111725;PATZ1:-0.0943771360627;POU1F1:-0.0971911172323;NKX3-2:-0.122943715703;NFIX:-0.143609511743;MYB:-0.144290566051;NFY{A,B,C}:-0.146496506984;TFDP1:-0.154768206805;TGIF1:-0.164959104304;LMO2:-0.181311651431;MYFfamily:-0.193661143728;HIF1A:-0.218122485129;GCM1,2:-0.22438039245;PRRX1,2:-0.235447503465;RORA:-0.24072141281;UFEwm:-0.250589047946;CDC5L:-0.285815613732;TLX2:-0.288557092658;HSF1,2:-0.295121815961;JUN:-0.295905836736;PAX4:-0.312542567764;FOXQ1:-0.31996680152;E2F1..5:-0.321969972561;MAZ:-0.329021049124;ADNP_IRX_SIX_ZHX:-0.330815856231;POU3F1..4:-0.331876587798;YY1:-0.336068751381;MYBL2:-0.337164369787;MED-1{core}:-0.358002932179;FOXP3:-0.361343728489;PAX3,7:-0.389368478861;HMX1:-0.391368318009;FOX{D1,D2}:-0.392675030931;SPIB:-0.396827419142;SOX5:-0.427789449902;FOX{F1,F2,J1}:-0.439487128142;EGR1..3:-0.468268069347;FOXM1:-0.475785931423;OCT4_SOX2{dimer}:-0.483971140793;CUX2:-0.503984852008;DBP:-0.512979402164;ZNF143:-0.521195881042;NKX2-1,4:-0.521338252521;SNAI1..3:-0.525424041329;POU5F1:-0.552955056101;ATF2:-0.55481365736;VSX1,2:-0.579678210975;ARID5B:-0.581244340507;TEF:-0.590185267592;SPI1:-0.601670206108;IRF1,2:-0.614299426391;MYOD1:-0.639915526037;SOX2:-0.64822328524;XBP1:-0.652895119625;AIRE:-0.66326323936;ZEB1:-0.671620390551;HOX{A4,D4}:-0.680197840475;FOXO1,3,4:-0.690204317254;ALX4:-0.693008421089;ALX1:-0.702709558037;FOX{I1,J2}:-0.706054281137;ZFP161:-0.736003808925;FOXD3:-0.745639956018;NRF1:-0.74864685549;IRF7:-0.762392814363;ELF1,2,4:-0.781737164787;GATA4:-0.822722669026;PAX2:-0.827578558062;CREB1:-0.850614503542;NKX6-1,2:-0.860472636036;ATF5_CREB3:-0.870219106914;PAX6:-0.876919730868;HBP1_HMGB_SSRP1_UBTF:-0.881189603495;DMAP1_NCOR{1,2}_SMARC:-0.916898724016;ZNF384:-0.927171061697;CDX1,2,4:-0.930825803625;ELK1,4_GABP{A,B1}:-0.939437465742;BREu{core}:-0.94214506459;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.976510376102;BPTF:-0.98241328844;PITX1..3:-0.99429528217;STAT1,3:-1.10650629843;RFX2..5_RFXANK_RFXAP:-1.11587505158;ATF4:-1.14351127109;EVI1:-1.20472941579;SREBF1,2:-1.29874275592;ZBTB16:-1.42603298709;FOXL1:-1.54254119345;HMGA1,2:-1.54508733653;FOXP1:-1.61099656149;RBPJ:-1.81139368644;FOXN1:-1.82586073934;IKZF2:-2.30400306854
|top_motifs=ZNF423:1.65033609099;GZF1:1.54410329772;TAL1_TCF{3,4,12}:1.43335406842;ZNF238:1.40191374392;NR3C1:1.3683362407;GLI1..3:1.35641387074;SRF:1.32989975606;HOX{A5,B5}:1.29866453414;PBX1:1.29633250874;RXRA_VDR{dimer}:1.28468435478;EBF1:1.27691024029;PAX8:1.26577647514;ZNF148:1.20904576009;HES1:1.19155096204;GTF2A1,2:1.16859453027;TFCP2:1.15866039375;NR6A1:1.09517430771;TFAP4:0.979998134688;TLX1..3_NFIC{dimer}:0.955818782222;IKZF1:0.921638973542;NANOG:0.910835469454;NR5A1,2:0.877000047253;ESR1:0.859859967221;T:0.804758704915;TEAD1:0.740798007041;GFI1B:0.732006852545;bHLH_family:0.72856657069;ESRRA:0.71984794274;LEF1_TCF7_TCF7L1,2:0.708922360616;HAND1,2:0.704513956259;AR:0.663479442379;TFAP2{A,C}:0.661593756199;RREB1:0.642976328785;MTF1:0.641864170747;TP53:0.627527577639;NFE2L2:0.626125240993;GTF2I:0.612853657407;EN1,2:0.602293533719;CRX:0.551303072379;ONECUT1,2:0.522691674062;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.519543503187;EP300:0.505833696053;MZF1:0.474546077582;GFI1:0.468450802657;HLF:0.461832977074;NR1H4:0.439677683846;SOX17:0.432242340808;NFATC1..3:0.39763343241;TFAP2B:0.393967814796;HOX{A6,A7,B6,B7}:0.390009732132;TBX4,5:0.377291126401;MAFB:0.375301018916;RXR{A,B,G}:0.357014063876;TBP:0.333022276192;STAT5{A,B}:0.331553333138;ZBTB6:0.330351884175;NANOG{mouse}:0.319635134286;BACH2:0.30596080026;SPZ1:0.294127847783;GATA6:0.287238918936;HNF4A_NR2F1,2:0.286362701692;LHX3,4:0.283158101251;HNF1A:0.279436731621;KLF4:0.27765443834;FOS_FOS{B,L1}_JUN{B,D}:0.265345674876;NKX3-1:0.261373057015;POU6F1:0.254635301967;PDX1:0.252310699617;PAX1,9:0.213426007149;POU2F1..3:0.198026590517;CEBPA,B_DDIT3:0.189115594497;STAT2,4,6:0.185957655676;XCPE1{core}:0.183158223143;HOXA9_MEIS1:0.174484961521;ATF6:0.162228243613;SOX{8,9,10}:0.158153043121;PPARG:0.147206038731;NKX2-2,8:0.13613133977;NKX2-3_NKX2-5:0.131799686802;FOXA2:0.0968067460191;PAX5:0.0876195273606;TOPORS:0.0862812313527;RUNX1..3:0.0804221146498;REST:0.0773832361367;AHR_ARNT_ARNT2:0.0683407989107;NFE2:0.0599712580075;HIC1:0.0571697900162;PRDM1:0.0482784708986;NFE2L1:0.0356400748381;NHLH1,2:0.0102424163778;NFKB1_REL_RELA:0.00578709541347;MTE{core}:0.00170664296113;FOSL2:-0.00461122664686;RFX1:-0.00828926502018;NFIL3:-0.016265562749;MEF2{A,B,C,D}:-0.0239062664794;SP1:-0.0300705369107;SMAD1..7,9:-0.0397571735185;ZIC1..3:-0.0659098478528;ETS1,2:-0.0767688111725;PATZ1:-0.0943771360627;POU1F1:-0.0971911172323;NKX3-2:-0.122943715703;NFIX:-0.143609511743;MYB:-0.144290566051;NFY{A,B,C}:-0.146496506984;TFDP1:-0.154768206805;TGIF1:-0.164959104304;LMO2:-0.181311651431;MYFfamily:-0.193661143728;HIF1A:-0.218122485129;GCM1,2:-0.22438039245;PRRX1,2:-0.235447503465;RORA:-0.24072141281;UFEwm:-0.250589047946;CDC5L:-0.285815613732;TLX2:-0.288557092658;HSF1,2:-0.295121815961;JUN:-0.295905836736;PAX4:-0.312542567764;FOXQ1:-0.31996680152;E2F1..5:-0.321969972561;MAZ:-0.329021049124;ADNP_IRX_SIX_ZHX:-0.330815856231;POU3F1..4:-0.331876587798;YY1:-0.336068751381;MYBL2:-0.337164369787;MED-1{core}:-0.358002932179;FOXP3:-0.361343728489;PAX3,7:-0.389368478861;HMX1:-0.391368318009;FOX{D1,D2}:-0.392675030931;SPIB:-0.396827419142;SOX5:-0.427789449902;FOX{F1,F2,J1}:-0.439487128142;EGR1..3:-0.468268069347;FOXM1:-0.475785931423;OCT4_SOX2{dimer}:-0.483971140793;CUX2:-0.503984852008;DBP:-0.512979402164;ZNF143:-0.521195881042;NKX2-1,4:-0.521338252521;SNAI1..3:-0.525424041329;POU5F1:-0.552955056101;ATF2:-0.55481365736;VSX1,2:-0.579678210975;ARID5B:-0.581244340507;TEF:-0.590185267592;SPI1:-0.601670206108;IRF1,2:-0.614299426391;MYOD1:-0.639915526037;SOX2:-0.64822328524;XBP1:-0.652895119625;AIRE:-0.66326323936;ZEB1:-0.671620390551;HOX{A4,D4}:-0.680197840475;FOXO1,3,4:-0.690204317254;ALX4:-0.693008421089;ALX1:-0.702709558037;FOX{I1,J2}:-0.706054281137;ZFP161:-0.736003808925;FOXD3:-0.745639956018;NRF1:-0.74864685549;IRF7:-0.762392814363;ELF1,2,4:-0.781737164787;GATA4:-0.822722669026;PAX2:-0.827578558062;CREB1:-0.850614503542;NKX6-1,2:-0.860472636036;ATF5_CREB3:-0.870219106914;PAX6:-0.876919730868;HBP1_HMGB_SSRP1_UBTF:-0.881189603495;DMAP1_NCOR{1,2}_SMARC:-0.916898724016;ZNF384:-0.927171061697;CDX1,2,4:-0.930825803625;ELK1,4_GABP{A,B1}:-0.939437465742;BREu{core}:-0.94214506459;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.976510376102;BPTF:-0.98241328844;PITX1..3:-0.99429528217;STAT1,3:-1.10650629843;RFX2..5_RFXANK_RFXAP:-1.11587505158;ATF4:-1.14351127109;EVI1:-1.20472941579;SREBF1,2:-1.29874275592;ZBTB16:-1.42603298709;FOXL1:-1.54254119345;HMGA1,2:-1.54508733653;FOXP1:-1.61099656149;RBPJ:-1.81139368644;FOXN1:-1.82586073934;IKZF2:-2.30400306854
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11506-119G3;search_select_hide=table117:FF:11506-119G3
}}
}}

Latest revision as of 18:04, 4 June 2020

Name:Fibroblast - Lymphatic, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11322
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelymph node
dev stageNA
sexNA
ageNA
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:5347
catalog numberSC2535
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004725
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11322 CAGE DRX008268 DRR009140
Accession ID Hg19

Library idBAMCTSS
CNhs11322 DRZ000565 DRZ001950
Accession ID Hg38

Library idBAMCTSS
CNhs11322 DRZ011915 DRZ013300
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004725
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10005.ACAGTG sRNA-Seq DRX037058 DRR041424
Accession ID Hg19

Library idBAMCTSS
SRhi10005.ACAGTG DRZ007066


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.193
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.14
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0823
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.461
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.175
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.281
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.281
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.233
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0791
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0518
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00718
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.365
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.281
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.234
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.667
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.281
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.281
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11322

Jaspar motifP-value
MA0002.20.0144
MA0003.10.158
MA0004.10.965
MA0006.10.394
MA0007.10.0387
MA0009.10.807
MA0014.10.606
MA0017.10.159
MA0018.22.93601e-4
MA0019.10.921
MA0024.10.00605
MA0025.10.295
MA0027.10.827
MA0028.10.0271
MA0029.10.372
MA0030.10.555
MA0031.10.469
MA0035.20.0305
MA0038.10.18
MA0039.20.604
MA0040.10.183
MA0041.10.302
MA0042.10.539
MA0043.10.00354
MA0046.10.221
MA0047.20.251
MA0048.10.887
MA0050.10.00144
MA0051.10.172
MA0052.10.181
MA0055.10.622
MA0057.10.236
MA0058.10.74
MA0059.10.675
MA0060.10.441
MA0061.10.238
MA0062.26.61063e-5
MA0065.20.183
MA0066.10.145
MA0067.10.00519
MA0068.10.622
MA0069.10.727
MA0070.10.107
MA0071.10.129
MA0072.10.964
MA0073.10.893
MA0074.10.294
MA0076.10.00104
MA0077.10.605
MA0078.10.221
MA0079.20.958
MA0080.20.15
MA0081.10.174
MA0083.16.49776e-6
MA0084.10.513
MA0087.10.828
MA0088.10.332
MA0090.10.00352
MA0091.10.0347
MA0092.10.145
MA0093.10.93
MA0099.21.6523e-9
MA0100.10.66
MA0101.10.489
MA0102.20.0144
MA0103.10.523
MA0104.20.934
MA0105.10.163
MA0106.10.0514
MA0107.10.277
MA0108.20.00293
MA0111.10.641
MA0112.20.00116
MA0113.10.00524
MA0114.10.305
MA0115.10.281
MA0116.10.162
MA0117.10.452
MA0119.10.0346
MA0122.10.886
MA0124.10.407
MA0125.10.494
MA0131.10.248
MA0135.10.216
MA0136.10.0686
MA0137.20.183
MA0138.20.366
MA0139.10.791
MA0140.10.0246
MA0141.10.0775
MA0142.10.851
MA0143.10.642
MA0144.10.8
MA0145.10.136
MA0146.10.137
MA0147.10.721
MA0148.10.275
MA0149.10.798
MA0150.10.203
MA0152.10.435
MA0153.10.184
MA0154.10.0308
MA0155.10.134
MA0156.10.0313
MA0157.10.637
MA0159.10.652
MA0160.10.151
MA0162.10.203
MA0163.10.0612
MA0164.10.516
MA0258.10.0143
MA0259.10.76



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11322

Novel motifP-value
10.679
100.803
1000.861
1010.996
1020.678
1030.118
1040.539
1050.0186
1060.115
1070.0849
1080.604
1090.134
110.0426
1100.142
1110.408
1120.44
1130.632
1140.159
1150.434
1160.31
1170.966
1180.828
1190.237
120.416
1200.674
1210.479
1220.268
1230.07
1240.457
1250.422
1260.99
1270.623
1280.249
1290.267
130.654
1300.0427
1310.463
1320.648
1330.61
1340.0415
1350.155
1360.283
1370.514
1380.396
1390.775
140.967
1400.673
1410.564
1420.877
1430.00667
1440.937
1450.286
1460.0738
1470.196
1480.393
1490.0507
150.27
1500.402
1510.424
1520.146
1530.931
1540.478
1550.463
1560.448
1570.0362
1580.369
1590.953
160.146
1600.0148
1610.512
1620.407
1630.776
1640.962
1650.185
1660.327
1670.207
1680.548
1690.0245
170.117
180.0315
190.0953
20.176
200.238
210.628
220.109
230.0937
240.224
250.665
260.141
270.194
280.375
290.85
30.638
300.175
310.482
327.2753e-5
330.555
340.0775
350.991
360.976
370.372
380.243
390.208
40.266
400.0888
410.698
420.658
430.18
440.555
450.265
460.117
470.442
480.185
490.198
50.623
500.244
510.454
520.52
530.986
540.542
550.416
560.306
570.321
580.985
590.0253
60.758
600.323
610.441
620.897
630.15
640.177
650.0473
660.308
670.901
680.0108
690.269
70.741
700.445
710.179
720.753
730.178
740.461
750.714
760.241
770.032
780.92
790.395
80.0693
800.0923
810.601
820.496
830.579
840.38
850.338
860.824
870.467
880.214
890.159
90.0807
900.202
910.0516
920.208
930.398
940.159
950.98
960.376
970.248
980.235
990.0298



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11322


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002554 (fibroblast of lymphatic vessel)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002049 (vasculature)
0007798 (vascular system)
0001473 (lymphatic vessel)
0002465 (lymphoid system)
0004535 (cardiovascular system)
0004536 (lymph vasculature)
0006558 (lymphatic part of lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000065 (human fibroblast of lymphatic vessel sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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