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{{f5samples
{{f5samples
|id=FF:11508-119G5
|DRA_sample_Accession=CAGE@SAMD00004907
|name=Smooth Muscle Cells - Esophageal, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004907
|sample_id=11508
|accession_numbers=CAGE;DRX008489;DRR009361;DRZ000786;DRZ002171;DRZ012136;DRZ013521
|rna_tube_id=119G5
|accession_numbers_RNASeq=sRNA-Seq;DRX037116;DRR041482;DRZ007124
|rna_box=119
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001043,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0001555,UBERON:0001041,UBERON:0002224,UBERON:0000915
|rna_position=G5
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002599
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=lot:575
|rna_catalog_number=SC2715
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=esophagus
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.7
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1.33
|sample_note=
|profile_hcage=CNhs11324,LSID768,release014,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10008,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002599
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000119,UBERON:0000383,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001007,UBERON:0001015,UBERON:0001041,UBERON:0001043,UBERON:0001062,UBERON:0001134,UBERON:0001555,UBERON:0002036,UBERON:0002050,UBERON:0002204,UBERON:0002224,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003104,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004290,UBERON:0004921,UBERON:0005178,UBERON:0005181,UBERON:0005291,UBERON:0005423,UBERON:0007026,UBERON:0009142,UBERON:0009143
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000182
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.85!704.63!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!2.07!142.39!FOXF1;;chr5:134369905..134369972,-!p1@PITX1!1.89!115.08!PITX1;;chr4:174451370..174451387,-!p1@HAND2!1.68!47.30!HAND2;;chr5:134369879..134369898,-!p2@PITX1!1.68!46.81!PITX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.62!202.86!CREB3L1;;chr19:46801639..46801699,+!p1@HIF3A!1.57!36.08!HIF3A;;chr6:1389789..1389821,+!p1@FOXF2!1.55!46.81!FOXF2;;chr7:19157248..19157268,-!p1@TWIST1!1.39!64.37!TWIST1;;chr19:45260775..45260838,+!p5@BCL3!1.35!27.80!BCL3;;chr11:46299539..46299620,+!p2@CREB3L1!1.29!31.21!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.26!17.07!HAND2;;chr5:92918919..92918942,+!p1@NR2F1!1.21!66.81!NR2F1;;chr17:59477233..59477263,+!p1@TBX2!1.21!46.81!TBX2;;chr2:239756671..239756732,+!p1@TWIST2!1.18!44.86!TWIST2;;chr14:29235961..29236008,+!p1@FOXG1!1.15!13.17!FOXG1;;chr2:239756739..239756755,+!p2@TWIST2!1.12!20.97!TWIST2;;chr17:1959369..1959388,+!p2@HIC1!1.07!28.28!HIC1;;chr17:46622070..46622109,-!p1@HOXB2!1.06!23.41!HOXB2;;chr11:61520075..61520136,+!p1@C11orf9!1.06!22.43!C11orf9;;chr2:121493425..121493474,+!p1@GLI2!0.99!19.51!GLI2;;chr15:76629123..76629151,+!p1@ISL2!0.99!9.75!ISL2;;chr8:48650715..48650735,-!p1@CEBPD!0.95!1039.64!CEBPD;;chr20:50721803..50721857,-!p2@ZFP64!0.95!12.68!ZFP64;;chr17:46622114..46622138,-!p4@HOXB2!0.95!12.19!HOXB2;;chr17:59477275..59477286,+!p3@TBX2!0.95!10.73!TBX2;;chr17:1958388..1958404,+!p1@HIC1!0.94!50.71!HIC1;;chr14:29236269..29236285,+!p3@FOXG1!0.92!7.31!FOXG1;;chr20:42295713..42295738,+!p2@MYBL2!0.91!44.37!MYBL2;;chr9:132427972..132428056,+!p1@PRRX2!0.90!9.27!PRRX2;;chr1:203055129..203055147,-!p1@MYOG!0.89!6.83!MYOG;;chr6:1389824..1389840,+!p3@FOXF2!0.89!6.83!FOXF2;;chr15:42749722..42749739,-!p2@ZFP106!0.88!12.19!ZFP106;;chr15:67418047..67418093,+!p4@SMAD3!0.87!8.29!SMAD3;;chr11:47279248..47279264,+!p3@NR1H3!0.87!7.31!NR1H3;;chr4:111558135..111558198,-!p2@PITX2!0.87!6.34!PITX2;;chr19:46800289..46800327,+!p2@HIF3A!0.87!6.34!HIF3A;;chr16:8962853..8962878,-!p1@CARHSP1!0.86!387.67!CARHSP1;;chr2:19558373..19558392,-!p1@OSR1!0.86!18.04!OSR1;;chr17:59477197..59477212,+!p2@TBX2!0.86!11.22!TBX2;;chr11:46299186..46299195,+!p3@CREB3L1!0.85!6.83!CREB3L1;;chr11:65686802..65686818,+!p6@DRAP1!0.84!10.73!DRAP1;;chr11:46299443..46299459,+!p4@CREB3L1!0.84!5.85!CREB3L1;;chr20:42543506..42543549,+!p2@TOX2!0.82!14.14!TOX2;;chr7:42276787..42276815,-!p1@GLI3!0.81!15.60!GLI3;;chr7:19157043..19157088,-!p2@TWIST1!0.81!14.63!TWIST1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.80!15.60!ZC3H7B;;chr11:47279504..47279563,+!p1@NR1H3!0.80!12.68!NR1H3;;chr11:113930425..113930471,+!p1@ZBTB16!0.80!7.80!ZBTB16;;chrY:21906594..21906622,-!p1@KDM5D!0.80!5.36!KDM5D;;chr5:92919100..92919135,+!p3@NR2F1!0.79!6.34!NR2F1;;chr20:42295745..42295765,+!p1@MYBL2!0.78!90.21!MYBL2;;chr7:42276822..42276895,-!p2@GLI3!0.77!15.60!GLI3;;chr17:46621937..46621966,-!p2@HOXB2!0.77!14.14!HOXB2;;chr16:86612320..86612394,+!p1@FOXL1!0.77!4.88!FOXL1;;chr20:42543441..42543497,+!p1@TOX2!0.74!22.43!TOX2;;chr15:67418119..67418162,+!p5@SMAD3!0.73!4.88!SMAD3;;chr4:111544219..111544240,-!p1@PITX2!0.73!4.39!PITX2;;chr15:96874012..96874042,+!p2@NR2F2!0.72!42.91!NR2F2;;chr12:2986206..2986258,-!p2@FOXM1!0.72!28.77!FOXM1;;chr6:34204672..34204692,+!p1@HMGA1!0.71!528.59!HMGA1;;chr7:44143925..44143970,+!p1@AEBP1!0.71!104.84!AEBP1;;chr11:65686952..65686975,+!p5@DRAP1!0.71!25.36!DRAP1;;chr11:63684602..63684664,-!p1@RCOR2!0.71!8.78!RCOR2;;chr19:45261550..45261641,+!p6@BCL3!0.71!7.31!BCL3;;chr8:72756667..72756736,-!p2@MSC!0.71!6.83!MSC;;chr17:46622205..46622218,-!p3@HOXB2!0.71!4.88!HOXB2;;chr2:242576431..242576458,-!p3@THAP4!0.70!10.73!THAP4;;chr22:41697484..41697496,+!p3@ZC3H7B!0.70!5.36!ZC3H7B;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.70!4.39!GLIS1;;chr8:37553292..37553317,+!p1@ZNF703!0.69!105.82!ZNF703;;chr10:77161504..77161530,-!p1@ZNF503!0.69!59.49!ZNF503;;chr12:7079780..7079791,-!p2@PHB2!0.69!22.92!PHB2;;chr2:121493492..121493537,+!p2@GLI2!0.69!6.83!GLI2;;chr2:85981222..85981259,+!p2@ATOH8!0.69!6.83!ATOH8;;chr4:174451350..174451363,-!p3@HAND2!0.69!3.90!HAND2;;chr6:1389989..1390019,+!p2@FOXF2!0.69!3.90!FOXF2;;chr16:86612046..86612065,+!p3@FOXL1!0.69!3.90!FOXL1;;chr20:306489..306564,+!p1@SOX12!0.68!46.81!SOX12;;chr15:37392724..37392757,-!p1@MEIS2!0.68!19.51!MEIS2;;chr16:8962202..8962222,-!p3@CARHSP1!0.68!7.31!CARHSP1;;chr5:72744445..72744466,-!p2@FOXD1!0.68!6.83!FOXD1;;chr8:72756267..72756296,-!p4@MSC!0.68!5.85!MSC;;chr15:37392094..37392116,-!p6@MEIS2!0.68!4.88!MEIS2;;chr1:8938766..8938774,-!p2@ENO1!0.67!290.63!ENO1;;chr14:21994337..21994442,-!p1@SALL2!0.67!11.22!SALL2;;chr7:150946015..150946070,-!p3@SMARCD3!0.67!8.78!SMARCD3;;chr8:60031619..60031676,-!p1@TOX!0.67!8.78!TOX;;chr17:46655704..46655718,-!p2@HOXB4!0.67!5.85!HOXB4;;chr6:34204921..34204939,+!p3@HMGA1!0.66!125.81!HMGA1;;chr10:77161533..77161546,-!p2@ZNF503!0.66!16.09!ZNF503;;chr16:86600426..86600441,+!p1@FOXC2!0.66!9.75!FOXC2;;chr12:2986275..2986363,-!p1@FOXM1!0.65!40.47!FOXM1;;chr1:221052776..221052799,+!p1@HLX!0.65!6.83!HLX;;chr19:13134772..13134822,+!p2@NFIX!0.65!5.36!NFIX;;chr2:121493717..121493755,+!p3@GLI2!0.65!3.90!GLI2;;chr15:67357924..67357952,+!p2@SMAD3!0.64!25.84!SMAD3;;chr11:64764435..64764449,-!p1@BATF2!0.64!4.88!BATF2;;chr12:54447637..54447659,+!p4@HOXC4!0.64!3.41!HOXC4;;chr12:56414795..56414836,+!p4@IKZF4!0.64!3.41!IKZF4;;chr15:67418177..67418204,+!p9@SMAD3!0.64!3.41!SMAD3;;chr7:27169801..27169844,-!p2@HOXA4!0.64!3.41!HOXA4;;chr2:85981271..85981289,+!p9@ATOH8!0.64!3.41!ATOH8;;chr4:299227..299272,-!p1@ZNF732!0.64!3.41!ZNF732;;chr17:3571887..3571918,-!p2@TAX1BP3!0.63!42.91!TAX1BP3;;chr10:94449703..94449718,+!p1@HHEX!0.63!14.63!HHEX;;chr1:8483878..8483907,-!p4@RERE!0.63!14.63!RERE;;chr8:106330656..106330684,+!p1@ZFPM2!0.63!9.75!ZFPM2;;chr15:37391588..37391604,-!p11@MEIS2!0.63!4.39!MEIS2;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.90!BNC1;;chr1:23885981..23886002,-!p1@ID3!0.62!666.11!ID3;;chr19:3366570..3366619,+!p1@NFIC!0.62!121.91!NFIC;;chr8:49833978..49833996,-!p1@SNAI2!0.62!77.53!SNAI2;;chr19:3359591..3359667,+!p2@NFIC!0.62!43.40!NFIC;;chr16:29817841..29817865,+!p1@MAZ!0.61!79.00!MAZ;;chr11:65687362..65687436,+!p3@DRAP1!0.61!16.58!DRAP1;;chr17:46655730..46655791,-!p1@HOXB4!0.61!8.78!HOXB4;;chr17:38465413..38465438,+!p5@RARA!0.61!5.36!RARA;;chr17:41623009..41623053,-!p4@ETV4!0.61!5.36!ETV4;;chr14:75894714..75894733,+!p1@JDP2!0.60!103.38!JDP2;;chr5:178368186..178368238,+!p1@ZNF454!0.60!5.85!ZNF454;;chr2:185463247..185463263,+!p1@ZNF804A!0.60!5.85!ZNF804A;;chr2:85980951..85981004,+!p1@ATOH8!0.60!5.36!ATOH8;;chr11:113930291..113930339,+!p2@ZBTB16!0.60!5.36!ZBTB16;;chr1:221052700..221052730,+!p5@HLX!0.60!4.88!HLX;;chr1:8926441..8926473,-!p10@ENO1!0.60!4.88!ENO1;;chr19:38720294..38720348,-!p1@DPF1!0.60!3.90!DPF1;;chr8:128748308..128748324,+!p2@MYC!0.59!98.50!MYC;;chr16:4322832..4322907,-!p1@TFAP4!0.59!26.33!TFAP4;;chr5:92918894..92918912,+!p2@NR2F1!0.59!11.22!NR2F1;;chr15:57511609..57511651,+!p2@TCF12!0.59!5.36!TCF12;;chr5:134369973..134369984,-!p3@PITX1!0.59!2.93!PITX1;;chr7:1577899..1577943,+!p3@MAFK!0.59!2.93!MAFK;;chr7:27142290..27142310,-!p1@HOXA2!0.59!2.93!HOXA2;;chr11:125034605..125034636,+!p2@PKNOX2!0.59!2.93!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.59!2.93!PKNOX2;;chr2:5832508..5832524,+!p1@SOX11!0.59!2.93!SOX11;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.93!ZFY;;chr5:176738887..176738934,-!p1@MXD3!0.58!22.92!MXD3;;chr8:49833948..49833973,-!p2@SNAI2!0.58!21.46!SNAI2;;chr6:34205372..34205412,+!p5@HMGA1!0.58!17.07!HMGA1;;chr19:36545128..36545203,-!p1@THAP8!0.58!15.60!THAP8;;chr17:38498594..38498661,+!p2@RARA!0.58!11.22!RARA;;chr19:56152332..56152347,+!p4@ZNF580!0.58!7.31!ZNF580;;chrX:48900782..48900793,-!p3@TFE3!0.58!5.85!TFE3;;chr8:60031762..60031803,-!p3@TOX!0.58!4.39!TOX;;chr19:6424813..6424835,-!p1@KHSRP!0.57!211.63!KHSRP;;chr19:49865646..49865718,-!p1@TEAD2!0.57!28.77!TEAD2;;chr12:3069037..3069119,+!p2@TEAD4!0.57!11.22!TEAD4;;chr19:926055..926068,+!p2@ARID3A!0.57!6.83!ARID3A;;chr1:164528616..164528660,+!p5@PBX1!0.57!6.34!PBX1;;chr15:96874145..96874166,+!p7@NR2F2!0.57!5.85!NR2F2;;chr11:8102749..8102769,+!p2@TUB!0.57!5.85!TUB;;chr12:122516678..122516687,+!p3@MLXIP!0.57!5.85!MLXIP;;chr17:42295777..42295816,-!p7@UBTF!0.57!3.41!UBTF;;chr22:41697520..41697613,+!p1@ZC3H7B!0.56!185.79!ZC3H7B;;chr9:35732647..35732678,+!p2@CREB3!0.56!18.04!CREB3;;chr14:61116183..61116208,-!p1@SIX1!0.56!12.19!SIX1;;chr12:54447599..54447630,+!p3@HOXC4!0.56!3.41!HOXC4;;chr6:85473156..85473210,-!p2@TBX18!0.56!3.41!TBX18;;chr2:46524537..46524553,+!p1@EPAS1!0.55!319.89!EPAS1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.55!233.09!TAX1BP3;;chr19:6424783..6424802,-!p2@KHSRP!0.55!65.83!KHSRP;;chr6:41514078..41514158,+!p1@FOXP4!0.55!28.77!FOXP4;;chr8:48650697..48650708,-!p2@CEBPD!0.55!24.38!CEBPD;;chr16:29818160..29818188,+!p6@MAZ!0.55!14.63!MAZ;;chr8:60031809..60031835,-!p4@TOX!0.55!3.41!TOX;;chr1:8938736..8938756,-!p1@ENO1!0.54!3507.06!ENO1;;chrX:48900871..48900890,-!p1@TFE3!0.54!162.87!TFE3;;chr19:13106214..13106382,+!p1@NFIX!0.54!72.66!NFIX;;chr17:17740330..17740349,-!p3@SREBF1!0.54!20.48!SREBF1;;chr17:17726907..17726958,-!p2@SREBF1!0.54!19.02!SREBF1;;chrX:66763856..66763896,+!p1@AR!0.54!3.90!AR;;chr9:132427883..132427951,+!p2@PRRX2!0.54!2.44!PRRX2;;chr15:80843484..80843499,+!p5@ARNT2!0.54!2.44!ARNT2;;chr15:83953373..83953386,-!p2@BNC1!0.54!2.44!BNC1;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.54!2.44!ZNF469;;chr6:35464729..35464738,-!p3@TEAD3!0.54!2.44!TEAD3;;chr11:65668011..65668020,-!p3@FOSL1!0.54!2.44!FOSL1;;chr19:50542543..50542548,+!p2@ZNF473!0.54!2.44!ZNF473;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.54!2.44!PEG3;;chr2:66666432..66666462,+!p7@MEIS1!0.54!2.44!MEIS1;;chr2:85980903..85980914,+!p11@ATOH8!0.54!2.44!ATOH8;;chr15:96873921..96873946,+!p1@NR2F2!0.53!86.80!NR2F2;;chr9:35732592..35732640,+!p1@CREB3!0.53!40.47!CREB3;;chr6:31126291..31126399,+!p1@TCF19!0.53!28.77!TCF19;;chr15:96873984..96873999,+!p3@NR2F2!0.53!21.94!NR2F2;;chr12:54772960..54773015,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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001043;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
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|def=
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg38.nobarcode.ctss.bed.gz
|id=FF:11508-119G5
|is_a=EFO:0002091;;FF:0000182
|is_obsolete=
|library_id=CNhs11324
|library_id_phase_based=2:CNhs11324
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11508
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.TAGCTT.11508
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11508
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.TAGCTT.11508
|name=Smooth Muscle Cells - Esophageal, donor1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_hcage=CNhs11324,LSID768,release014,COMPLETED
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|rna_box=119
|rna_catalog_number=SC2715
|rna_concentration=1.33
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=lot:575
|rna_od260/230=
|rna_od260/280=
|rna_position=G5
|rna_rin=9.7
|rna_sample_type=total RNA
|rna_tube_id=119G5
|rna_weight_ug=10
|rnaseq_library_id=SRhi10008.TAGCTT
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.36407440721986e-205!GO:0005737;cytoplasm;1.72779657095268e-186!GO:0043226;organelle;3.3070816901264e-164!GO:0043229;intracellular organelle;5.19410527501087e-164!GO:0043231;intracellular membrane-bound organelle;3.87575392042858e-162!GO:0043227;membrane-bound organelle;5.30074512857234e-162!GO:0044444;cytoplasmic part;2.10730131913683e-134!GO:0044422;organelle part;2.85739836461437e-134!GO:0044446;intracellular organelle part;8.17950135682456e-133!GO:0032991;macromolecular complex;1.40491753926371e-84!GO:0044237;cellular metabolic process;1.67678825780196e-76!GO:0030529;ribonucleoprotein complex;2.95170295012877e-76!GO:0044238;primary metabolic process;7.43640013227602e-76!GO:0005739;mitochondrion;5.33235571355815e-73!GO:0005515;protein binding;1.26528988380131e-69!GO:0043233;organelle lumen;5.01574253978958e-66!GO:0031974;membrane-enclosed lumen;5.01574253978958e-66!GO:0043170;macromolecule metabolic process;5.93485958345724e-65!GO:0044428;nuclear part;1.12574363425917e-57!GO:0003723;RNA binding;3.51061930719522e-54!GO:0005634;nucleus;4.30709457573488e-54!GO:0005840;ribosome;2.60582594709877e-52!GO:0031090;organelle membrane;7.65473705648646e-50!GO:0044429;mitochondrial part;3.24434609557428e-49!GO:0003735;structural constituent of ribosome;4.82585490627056e-47!GO:0009058;biosynthetic process;1.18342538130207e-46!GO:0006412;translation;1.47908219845215e-45!GO:0019538;protein metabolic process;5.20832390768144e-44!GO:0016043;cellular component organization and biogenesis;3.17866554562492e-43!GO:0044249;cellular biosynthetic process;1.04821566828231e-42!GO:0043234;protein complex;3.68130448541347e-42!GO:0033279;ribosomal subunit;1.83564433292211e-40!GO:0031967;organelle envelope;3.69915453790319e-40!GO:0031975;envelope;8.54666169007901e-40!GO:0044260;cellular macromolecule metabolic process;3.53801665378869e-39!GO:0044267;cellular protein metabolic process;4.31745086538901e-38!GO:0009059;macromolecule biosynthetic process;1.55616617337951e-37!GO:0006396;RNA processing;9.10755287311733e-37!GO:0031981;nuclear lumen;2.43609040955515e-36!GO:0005829;cytosol;3.17762479136237e-36!GO:0006996;organelle organization and biogenesis;9.5923151946687e-34!GO:0015031;protein transport;8.16283388467109e-33!GO:0005740;mitochondrial envelope;9.77857696023829e-33!GO:0033036;macromolecule localization;5.83345877710172e-32!GO:0043283;biopolymer metabolic process;1.90137741809226e-31!GO:0031966;mitochondrial membrane;9.78446821248657e-31!GO:0043228;non-membrane-bound organelle;1.33551650273296e-30!GO:0043232;intracellular non-membrane-bound organelle;1.33551650273296e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.90652439854747e-30!GO:0008104;protein localization;1.55236634520727e-29!GO:0045184;establishment of protein localization;1.97946966142015e-29!GO:0019866;organelle inner membrane;3.79904992580101e-29!GO:0065003;macromolecular complex assembly;3.60755348397377e-28!GO:0005743;mitochondrial inner membrane;4.73520157061593e-28!GO:0016071;mRNA metabolic process;6.40408692680091e-28!GO:0006259;DNA metabolic process;1.02586683787224e-27!GO:0046907;intracellular transport;1.4299179435415e-27!GO:0010467;gene expression;2.00759822769467e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.30125783455755e-27!GO:0022607;cellular component assembly;6.08828584780406e-26!GO:0008380;RNA splicing;1.77405636909436e-25!GO:0044445;cytosolic part;5.38520943318536e-24!GO:0006397;mRNA processing;1.76993818681492e-23!GO:0006886;intracellular protein transport;1.39216210802682e-22!GO:0005654;nucleoplasm;9.39975404049799e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.13223758481837e-21!GO:0015934;large ribosomal subunit;3.94980289816597e-21!GO:0007049;cell cycle;4.83489070245824e-21!GO:0005783;endoplasmic reticulum;1.32117120924634e-20!GO:0031980;mitochondrial lumen;1.47771281631069e-20!GO:0005759;mitochondrial matrix;1.47771281631069e-20!GO:0015935;small ribosomal subunit;2.04582297314138e-20!GO:0044455;mitochondrial membrane part;3.24497501119509e-20!GO:0006119;oxidative phosphorylation;5.04401240041428e-20!GO:0044451;nucleoplasm part;1.48352683288927e-18!GO:0005681;spliceosome;2.53064121784071e-18!GO:0012505;endomembrane system;3.81404823719271e-18!GO:0044432;endoplasmic reticulum part;1.44752204626819e-17!GO:0006457;protein folding;1.87432518552599e-17!GO:0000166;nucleotide binding;4.55341162538385e-17!GO:0022402;cell cycle process;5.59036963923705e-17!GO:0051186;cofactor metabolic process;1.24557623494164e-16!GO:0005746;mitochondrial respiratory chain;1.46207576970814e-16!GO:0005730;nucleolus;7.59261065835569e-16!GO:0016462;pyrophosphatase activity;8.30136582749001e-16!GO:0051649;establishment of cellular localization;1.08854493055375e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.08979057939031e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.13036375548665e-15!GO:0048770;pigment granule;1.99516969184803e-15!GO:0042470;melanosome;1.99516969184803e-15!GO:0000278;mitotic cell cycle;2.09134519139974e-15!GO:0008134;transcription factor binding;2.09247476965057e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.49211866801285e-15!GO:0051641;cellular localization;2.49786091088955e-15!GO:0017111;nucleoside-triphosphatase activity;4.30809539251902e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.36333570059141e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.9630675666258e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.35395349764356e-14!GO:0003954;NADH dehydrogenase activity;1.35395349764356e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.35395349764356e-14!GO:0005761;mitochondrial ribosome;4.39190039289728e-14!GO:0000313;organellar ribosome;4.39190039289728e-14!GO:0044248;cellular catabolic process;2.81709467110411e-13!GO:0016874;ligase activity;4.4825698720493e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.90279278345121e-13!GO:0042773;ATP synthesis coupled electron transport;4.90279278345121e-13!GO:0051276;chromosome organization and biogenesis;6.34276952999424e-13!GO:0006732;coenzyme metabolic process;7.97049514595381e-13!GO:0030964;NADH dehydrogenase complex (quinone);9.12259201036966e-13!GO:0045271;respiratory chain complex I;9.12259201036966e-13!GO:0005747;mitochondrial respiratory chain complex I;9.12259201036966e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.00524227735151e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.03668130404991e-12!GO:0044265;cellular macromolecule catabolic process;1.10531141571444e-12!GO:0006605;protein targeting;1.44850719075297e-12!GO:0005794;Golgi apparatus;1.56227151602723e-12!GO:0051082;unfolded protein binding;1.80830957192785e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.9798438122026e-12!GO:0000502;proteasome complex (sensu Eukaryota);2.62566663984874e-12!GO:0005789;endoplasmic reticulum membrane;2.67606729369106e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.86303528547394e-12!GO:0022403;cell cycle phase;4.22307433517042e-12!GO:0003676;nucleic acid binding;4.67354320545505e-12!GO:0006974;response to DNA damage stimulus;5.27757708713909e-12!GO:0017076;purine nucleotide binding;5.7896225044261e-12!GO:0032553;ribonucleotide binding;5.7896225044261e-12!GO:0032555;purine ribonucleotide binding;5.7896225044261e-12!GO:0006323;DNA packaging;5.82819975708798e-12!GO:0005694;chromosome;6.44717048409712e-12!GO:0006512;ubiquitin cycle;1.30944680252246e-11!GO:0044427;chromosomal part;1.38631544108382e-11!GO:0043285;biopolymer catabolic process;1.52838002284391e-11!GO:0022618;protein-RNA complex assembly;1.57683167452884e-11!GO:0009057;macromolecule catabolic process;2.7113004336258e-11!GO:0009055;electron carrier activity;2.74696822252849e-11!GO:0043412;biopolymer modification;3.32956298544853e-11!GO:0008135;translation factor activity, nucleic acid binding;1.50585807439057e-10!GO:0042254;ribosome biogenesis and assembly;1.66766401641423e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.81229589140919e-10!GO:0007067;mitosis;1.91670919126959e-10!GO:0000087;M phase of mitotic cell cycle;1.97879664197494e-10!GO:0065004;protein-DNA complex assembly;1.983775609943e-10!GO:0019941;modification-dependent protein catabolic process;2.13303384527205e-10!GO:0043632;modification-dependent macromolecule catabolic process;2.13303384527205e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.83259180418071e-10!GO:0000375;RNA splicing, via transesterification reactions;2.83259180418071e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.83259180418071e-10!GO:0044257;cellular protein catabolic process;3.31742013542005e-10!GO:0005793;ER-Golgi intermediate compartment;3.49523533588456e-10!GO:0006511;ubiquitin-dependent protein catabolic process;3.74572269158792e-10!GO:0012501;programmed cell death;4.14638500458136e-10!GO:0006260;DNA replication;4.40247605166626e-10!GO:0048193;Golgi vesicle transport;4.50788899092524e-10!GO:0003712;transcription cofactor activity;4.50788899092524e-10!GO:0009719;response to endogenous stimulus;4.99889744295231e-10!GO:0005524;ATP binding;5.08543088176921e-10!GO:0032559;adenyl ribonucleotide binding;5.70050200099175e-10!GO:0000785;chromatin;6.50708294740394e-10!GO:0006333;chromatin assembly or disassembly;6.61986386473144e-10!GO:0051726;regulation of cell cycle;6.75926243346721e-10!GO:0006464;protein modification process;7.29553807020962e-10!GO:0030554;adenyl nucleotide binding;7.41297746556003e-10!GO:0000074;regulation of progression through cell cycle;7.55605276658232e-10!GO:0006915;apoptosis;7.79861094990719e-10!GO:0006281;DNA repair;1.0207230532771e-09!GO:0016491;oxidoreductase activity;1.42017311972092e-09!GO:0030163;protein catabolic process;4.9299263591533e-09!GO:0006913;nucleocytoplasmic transport;5.17352058949831e-09!GO:0048523;negative regulation of cellular process;5.79363352797567e-09!GO:0005635;nuclear envelope;6.29675113697189e-09!GO:0006399;tRNA metabolic process;6.50663468346136e-09!GO:0006334;nucleosome assembly;6.95717600321831e-09!GO:0008219;cell death;7.66248558746477e-09!GO:0016265;death;7.66248558746477e-09!GO:0031497;chromatin assembly;8.26351749046946e-09!GO:0009259;ribonucleotide metabolic process;9.79255425624518e-09!GO:0051188;cofactor biosynthetic process;1.05951168548396e-08!GO:0016070;RNA metabolic process;1.12622433217411e-08!GO:0000279;M phase;1.19903430801924e-08!GO:0051169;nuclear transport;1.19903430801924e-08!GO:0006163;purine nucleotide metabolic process;1.22205060516358e-08!GO:0009150;purine ribonucleotide metabolic process;2.02362740377813e-08!GO:0007005;mitochondrion organization and biogenesis;2.25579317992671e-08!GO:0006461;protein complex assembly;2.51103920452783e-08!GO:0016604;nuclear body;2.73177349019389e-08!GO:0031965;nuclear membrane;3.35566843061768e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.37399943046838e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.90410905749403e-08!GO:0043687;post-translational protein modification;4.38196645045886e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.43570757499224e-08!GO:0051301;cell division;5.42090603010926e-08!GO:0003743;translation initiation factor activity;6.63305921750878e-08!GO:0016192;vesicle-mediated transport;6.82529328798614e-08!GO:0017038;protein import;7.04183608872081e-08!GO:0006164;purine nucleotide biosynthetic process;7.77889060564745e-08!GO:0042623;ATPase activity, coupled;8.83488049277863e-08!GO:0016740;transferase activity;9.11698050748544e-08!GO:0009056;catabolic process;1.15770559966225e-07!GO:0005788;endoplasmic reticulum lumen;1.20340753162694e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.25029191503779e-07!GO:0009260;ribonucleotide biosynthetic process;1.32827002200942e-07!GO:0048519;negative regulation of biological process;1.38777534229032e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.5381479923772e-07!GO:0006364;rRNA processing;1.61987857538554e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.92836991162034e-07!GO:0009141;nucleoside triphosphate metabolic process;1.97586124443592e-07!GO:0008565;protein transporter activity;2.2875844093066e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.37039237221447e-07!GO:0044453;nuclear membrane part;2.6382650755194e-07!GO:0009060;aerobic respiration;3.29432703558094e-07!GO:0065002;intracellular protein transport across a membrane;3.30606076194647e-07!GO:0006091;generation of precursor metabolites and energy;3.32571287727279e-07!GO:0016887;ATPase activity;3.59971089076619e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.70213079030614e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.70213079030614e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.70213079030614e-07!GO:0016072;rRNA metabolic process;3.70213079030614e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.53216539303767e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.53216539303767e-07!GO:0006366;transcription from RNA polymerase II promoter;4.79089224730749e-07!GO:0042981;regulation of apoptosis;5.24032428093212e-07!GO:0043067;regulation of programmed cell death;5.24032428093212e-07!GO:0009117;nucleotide metabolic process;5.99251915891701e-07!GO:0006413;translational initiation;7.92922009369501e-07!GO:0016568;chromatin modification;9.28600037011827e-07!GO:0015986;ATP synthesis coupled proton transport;9.63364285947147e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.63364285947147e-07!GO:0043038;amino acid activation;1.1037648620136e-06!GO:0006418;tRNA aminoacylation for protein translation;1.1037648620136e-06!GO:0043039;tRNA aminoacylation;1.1037648620136e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.11102875025487e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.11102875025487e-06!GO:0016853;isomerase activity;1.30079810412313e-06!GO:0006446;regulation of translational initiation;1.56471206325493e-06!GO:0003714;transcription corepressor activity;1.57111503287926e-06!GO:0008639;small protein conjugating enzyme activity;1.65649217024977e-06!GO:0045333;cellular respiration;1.74005264181249e-06!GO:0003924;GTPase activity;1.76283943857676e-06!GO:0016607;nuclear speck;1.87865014545262e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.97476602922319e-06!GO:0051329;interphase of mitotic cell cycle;2.07228142160014e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.13507096520285e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.13507096520285e-06!GO:0008654;phospholipid biosynthetic process;2.17905347676496e-06!GO:0016564;transcription repressor activity;2.19756430087781e-06!GO:0046034;ATP metabolic process;2.33586422423518e-06!GO:0009108;coenzyme biosynthetic process;2.77390945192973e-06!GO:0005667;transcription factor complex;3.23888833516169e-06!GO:0051325;interphase;3.2580160667188e-06!GO:0004842;ubiquitin-protein ligase activity;3.26426995046943e-06!GO:0015630;microtubule cytoskeleton;3.61801224106187e-06!GO:0030120;vesicle coat;4.15730899043532e-06!GO:0030662;coated vesicle membrane;4.15730899043532e-06!GO:0019829;cation-transporting ATPase activity;4.36987006050615e-06!GO:0031324;negative regulation of cellular metabolic process;4.62746286685034e-06!GO:0005762;mitochondrial large ribosomal subunit;4.83350085487437e-06!GO:0000315;organellar large ribosomal subunit;4.83350085487437e-06!GO:0019787;small conjugating protein ligase activity;4.87655964990631e-06!GO:0016779;nucleotidyltransferase activity;5.1908778370867e-06!GO:0005643;nuclear pore;5.80873258177062e-06!GO:0045259;proton-transporting ATP synthase complex;5.99196286410665e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.99778038152246e-06!GO:0006888;ER to Golgi vesicle-mediated transport;6.5109822754493e-06!GO:0005768;endosome;6.85761977159309e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.50631303020836e-06!GO:0006754;ATP biosynthetic process;1.03958966411529e-05!GO:0006753;nucleoside phosphate metabolic process;1.03958966411529e-05!GO:0003899;DNA-directed RNA polymerase activity;1.0897241560519e-05!GO:0003697;single-stranded DNA binding;1.10297549060878e-05!GO:0044431;Golgi apparatus part;1.14623693039522e-05!GO:0016881;acid-amino acid ligase activity;1.18997820982867e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.22148470416549e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.46453075903415e-05!GO:0008610;lipid biosynthetic process;1.46453075903415e-05!GO:0045786;negative regulation of progression through cell cycle;1.48412060102476e-05!GO:0046930;pore complex;1.59609778507666e-05!GO:0051246;regulation of protein metabolic process;1.78280663664539e-05!GO:0006099;tricarboxylic acid cycle;1.78280663664539e-05!GO:0046356;acetyl-CoA catabolic process;1.78280663664539e-05!GO:0006084;acetyl-CoA metabolic process;2.08256105481219e-05!GO:0004386;helicase activity;2.08608746839021e-05!GO:0048475;coated membrane;2.10912011582532e-05!GO:0030117;membrane coat;2.10912011582532e-05!GO:0031252;leading edge;2.18932376690324e-05!GO:0016787;hydrolase activity;2.27543293029671e-05!GO:0008026;ATP-dependent helicase activity;2.27655518389275e-05!GO:0045454;cell redox homeostasis;2.54295137434039e-05!GO:0000786;nucleosome;2.86082506342599e-05!GO:0019843;rRNA binding;3.34657459673652e-05!GO:0043069;negative regulation of programmed cell death;4.17973827925678e-05!GO:0008361;regulation of cell size;4.23860700773925e-05!GO:0006916;anti-apoptosis;4.37950308175014e-05!GO:0051187;cofactor catabolic process;4.50854484811055e-05!GO:0006752;group transfer coenzyme metabolic process;4.56446801290105e-05!GO:0009892;negative regulation of metabolic process;4.59905688402947e-05!GO:0006793;phosphorus metabolic process;4.67576932374124e-05!GO:0006796;phosphate metabolic process;4.67576932374124e-05!GO:0005791;rough endoplasmic reticulum;4.77725371852272e-05!GO:0016126;sterol biosynthetic process;4.81990159587654e-05!GO:0043066;negative regulation of apoptosis;4.87690758304811e-05!GO:0050794;regulation of cellular process;5.00082146470848e-05!GO:0016049;cell growth;5.1435237411624e-05!GO:0044440;endosomal part;5.1435237411624e-05!GO:0010008;endosome membrane;5.1435237411624e-05!GO:0016310;phosphorylation;5.21764839596034e-05!GO:0051170;nuclear import;5.36628083236482e-05!GO:0009109;coenzyme catabolic process;5.60887167900628e-05!GO:0004298;threonine endopeptidase activity;6.06877611593008e-05!GO:0044262;cellular carbohydrate metabolic process;6.60169640805262e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.52522823549552e-05!GO:0005905;coated pit;8.24319302855053e-05!GO:0006606;protein import into nucleus;8.24319302855053e-05!GO:0016563;transcription activator activity;8.89351051487206e-05!GO:0043623;cellular protein complex assembly;8.94475875177401e-05!GO:0030036;actin cytoskeleton organization and biogenesis;9.47615648181293e-05!GO:0019899;enzyme binding;9.52183112231823e-05!GO:0030867;rough endoplasmic reticulum membrane;9.62593471865351e-05!GO:0032446;protein modification by small protein conjugation;9.86833058691585e-05!GO:0006403;RNA localization;0.000102804725526413!GO:0050657;nucleic acid transport;0.000105588117988366!GO:0051236;establishment of RNA localization;0.000105588117988366!GO:0050658;RNA transport;0.000105588117988366!GO:0005773;vacuole;0.000105588117988366!GO:0051427;hormone receptor binding;0.000108361714012855!GO:0007010;cytoskeleton organization and biogenesis;0.000110036342654361!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000110289030998516!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000115653386385061!GO:0016023;cytoplasmic membrane-bound vesicle;0.00012232140630819!GO:0003713;transcription coactivator activity;0.000127908048592975!GO:0000245;spliceosome assembly;0.000129747127747916!GO:0016567;protein ubiquitination;0.000140034282052233!GO:0015980;energy derivation by oxidation of organic compounds;0.000141843728073217!GO:0031988;membrane-bound vesicle;0.000144690657875446!GO:0016859;cis-trans isomerase activity;0.00015555457363203!GO:0043566;structure-specific DNA binding;0.000155611235005082!GO:0001558;regulation of cell growth;0.000165111861200706!GO:0048522;positive regulation of cellular process;0.000166519913046889!GO:0030176;integral to endoplasmic reticulum membrane;0.000178450171986121!GO:0005770;late endosome;0.00017889620067036!GO:0033116;ER-Golgi intermediate compartment membrane;0.00018204049527347!GO:0046474;glycerophospholipid biosynthetic process;0.00018222230722091!GO:0051789;response to protein stimulus;0.000183432366391088!GO:0006986;response to unfolded protein;0.000183432366391088!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000188524482290033!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000195292231888424!GO:0035257;nuclear hormone receptor binding;0.000201678580788757!GO:0005525;GTP binding;0.000201678580788757!GO:0005813;centrosome;0.000245161881829701!GO:0005798;Golgi-associated vesicle;0.000255002618745479!GO:0000139;Golgi membrane;0.000267808789908169!GO:0000314;organellar small ribosomal subunit;0.00027169625166378!GO:0005763;mitochondrial small ribosomal subunit;0.00027169625166378!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000288420094916861!GO:0016481;negative regulation of transcription;0.000327489088287472!GO:0006082;organic acid metabolic process;0.000360784795449463!GO:0031982;vesicle;0.000366630935481913!GO:0043681;protein import into mitochondrion;0.00038786592285207!GO:0031410;cytoplasmic vesicle;0.00038786592285207!GO:0006839;mitochondrial transport;0.00038786592285207!GO:0005819;spindle;0.000427073789122733!GO:0019752;carboxylic acid metabolic process;0.00043848603355511!GO:0006626;protein targeting to mitochondrion;0.000466399653064504!GO:0050789;regulation of biological process;0.000480430317314728!GO:0030029;actin filament-based process;0.000486223550168347!GO:0005048;signal sequence binding;0.000532113881797346!GO:0005815;microtubule organizing center;0.000534878957543572!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000592108889363815!GO:0006695;cholesterol biosynthetic process;0.000600031137810416!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000609358683367275!GO:0000323;lytic vacuole;0.000663112744763591!GO:0005764;lysosome;0.000663112744763591!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000663380578731448!GO:0046467;membrane lipid biosynthetic process;0.000699555379390347!GO:0030133;transport vesicle;0.000702769905582677!GO:0006613;cotranslational protein targeting to membrane;0.000745233514577977!GO:0031968;organelle outer membrane;0.000784879258976047!GO:0019867;outer membrane;0.000799017573950603!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000820977414885354!GO:0065009;regulation of a molecular function;0.000853795462937966!GO:0009165;nucleotide biosynthetic process;0.000926077516989347!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00100237870720204!GO:0043284;biopolymer biosynthetic process;0.0010080149955156!GO:0042802;identical protein binding;0.00101296560009743!GO:0008250;oligosaccharyl transferase complex;0.00110340318077321!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00113678136698267!GO:0015002;heme-copper terminal oxidase activity;0.00113678136698267!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00113678136698267!GO:0004129;cytochrome-c oxidase activity;0.00113678136698267!GO:0006261;DNA-dependent DNA replication;0.00115728474836328!GO:0032561;guanyl ribonucleotide binding;0.00118737086718986!GO:0019001;guanyl nucleotide binding;0.00118737086718986!GO:0030880;RNA polymerase complex;0.00119805495797532!GO:0008632;apoptotic program;0.00130552283669362!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0013096947574603!GO:0051920;peroxiredoxin activity;0.00132942129536956!GO:0007006;mitochondrial membrane organization and biogenesis;0.00133776221828451!GO:0005741;mitochondrial outer membrane;0.00139469733302047!GO:0008033;tRNA processing;0.00150845146880273!GO:0006414;translational elongation;0.00150845146880273!GO:0006520;amino acid metabolic process;0.00157014006457981!GO:0006979;response to oxidative stress;0.00160388029079837!GO:0043488;regulation of mRNA stability;0.00165590909380237!GO:0043487;regulation of RNA stability;0.00165590909380237!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00166101361653367!GO:0051028;mRNA transport;0.00176150394926181!GO:0000151;ubiquitin ligase complex;0.001766830691949!GO:0003724;RNA helicase activity;0.00187118013513005!GO:0046489;phosphoinositide biosynthetic process;0.00189068241801631!GO:0030132;clathrin coat of coated pit;0.00192622035719145!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00195073789985617!GO:0005774;vacuolar membrane;0.00201164866026221!GO:0043021;ribonucleoprotein binding;0.00225973500842672!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00234426839746406!GO:0005769;early endosome;0.00242697199440923!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00257744241027012!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00269335713121869!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00286479330680033!GO:0015399;primary active transmembrane transporter activity;0.00286479330680033!GO:0040008;regulation of growth;0.00293477497270155!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00293477497270155!GO:0000428;DNA-directed RNA polymerase complex;0.00293477497270155!GO:0005885;Arp2/3 protein complex;0.00293843089605514!GO:0018196;peptidyl-asparagine modification;0.00295170335092969!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00295170335092969!GO:0006950;response to stress;0.0030209573953658!GO:0006118;electron transport;0.00313994127387501!GO:0016125;sterol metabolic process;0.00313994127387501!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00317408210828628!GO:0003682;chromatin binding;0.00340841375241569!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00349159056750668!GO:0006778;porphyrin metabolic process;0.00350058949066864!GO:0033013;tetrapyrrole metabolic process;0.00350058949066864!GO:0048518;positive regulation of biological process;0.00350892276164082!GO:0008637;apoptotic mitochondrial changes;0.00353556607019474!GO:0031902;late endosome membrane;0.00353556607019474!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00369414159834508!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00369414159834508!GO:0007051;spindle organization and biogenesis;0.00412343894842473!GO:0030027;lamellipodium;0.00414099479226403!GO:0016860;intramolecular oxidoreductase activity;0.00418696404206626!GO:0005657;replication fork;0.00424819058809814!GO:0008092;cytoskeletal protein binding;0.0043163031007793!GO:0006612;protein targeting to membrane;0.00460378632728408!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00473972825238347!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00473972825238347!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00473972825238347!GO:0006779;porphyrin biosynthetic process;0.00477770701143106!GO:0033014;tetrapyrrole biosynthetic process;0.00477770701143106!GO:0000075;cell cycle checkpoint;0.00483034511829092!GO:0015992;proton transport;0.00484942901697861!GO:0046483;heterocycle metabolic process;0.00491993357963315!GO:0051168;nuclear export;0.00502837448180346!GO:0044452;nucleolar part;0.00502837448180346!GO:0005684;U2-dependent spliceosome;0.00519957044943387!GO:0044437;vacuolar part;0.00522046480533029!GO:0004576;oligosaccharyl transferase activity;0.00539757330411609!GO:0006818;hydrogen transport;0.00539757330411609!GO:0050662;coenzyme binding;0.00540924905308281!GO:0016741;transferase activity, transferring one-carbon groups;0.00544290494968905!GO:0031072;heat shock protein binding;0.00554911092542001!GO:0006402;mRNA catabolic process;0.00568471945273521!GO:0008168;methyltransferase activity;0.00568899859499138!GO:0008186;RNA-dependent ATPase activity;0.00577445602279535!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00587347944937171!GO:0005765;lysosomal membrane;0.00599706274049019!GO:0006740;NADPH regeneration;0.00611692153983677!GO:0006098;pentose-phosphate shunt;0.00611692153983677!GO:0006595;polyamine metabolic process;0.00611901791129628!GO:0045792;negative regulation of cell size;0.00622191028046593!GO:0007264;small GTPase mediated signal transduction;0.00632177477290613!GO:0006807;nitrogen compound metabolic process;0.00633066602319071!GO:0032508;DNA duplex unwinding;0.00633066602319071!GO:0032392;DNA geometric change;0.00633066602319071!GO:0017166;vinculin binding;0.00648347524910531!GO:0006650;glycerophospholipid metabolic process;0.00674211777722337!GO:0006268;DNA unwinding during replication;0.00694110564745372!GO:0040029;regulation of gene expression, epigenetic;0.00702169793634045!GO:0045941;positive regulation of transcription;0.00715836026444215!GO:0016044;membrane organization and biogenesis;0.00719242011721355!GO:0007346;regulation of progression through mitotic cell cycle;0.00720244631557598!GO:0045892;negative regulation of transcription, DNA-dependent;0.00739337400417774!GO:0007040;lysosome organization and biogenesis;0.00752846000649446!GO:0030308;negative regulation of cell growth;0.00762109494708028!GO:0016272;prefoldin complex;0.00780418452453143!GO:0008094;DNA-dependent ATPase activity;0.00788292300281592!GO:0001726;ruffle;0.00811181583740119!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00820085767471593!GO:0030118;clathrin coat;0.00835608764387443!GO:0007050;cell cycle arrest;0.00836324597475213!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00842561079785188!GO:0005874;microtubule;0.00843496030845916!GO:0042168;heme metabolic process;0.0089009272914544!GO:0007243;protein kinase cascade;0.00897653565637873!GO:0004674;protein serine/threonine kinase activity;0.00906400539379853!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00919176860955752!GO:0048037;cofactor binding;0.00924342918063349!GO:0006066;alcohol metabolic process;0.00932632806865284!GO:0008286;insulin receptor signaling pathway;0.00961932939230692!GO:0051252;regulation of RNA metabolic process;0.00991745201121799!GO:0000082;G1/S transition of mitotic cell cycle;0.0103136581669138!GO:0030663;COPI coated vesicle membrane;0.0103238289119295!GO:0030126;COPI vesicle coat;0.0103238289119295!GO:0006643;membrane lipid metabolic process;0.0106701998146202!GO:0006790;sulfur metabolic process;0.0110428876865784!GO:0015631;tubulin binding;0.011091182175856!GO:0030658;transport vesicle membrane;0.0114302632099363!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0116801109225163!GO:0004004;ATP-dependent RNA helicase activity;0.0117696189544176!GO:0000084;S phase of mitotic cell cycle;0.0119327949699936!GO:0051348;negative regulation of transferase activity;0.0120274827364868!GO:0006783;heme biosynthetic process;0.0120803885146044!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0123982845293613!GO:0051087;chaperone binding;0.012510257394412!GO:0006497;protein amino acid lipidation;0.0125731473073164!GO:0033673;negative regulation of kinase activity;0.0126212619181675!GO:0006469;negative regulation of protein kinase activity;0.0126212619181675!GO:0048487;beta-tubulin binding;0.0128663493456437!GO:0006352;transcription initiation;0.0129583433139692!GO:0009308;amine metabolic process;0.013195374775045!GO:0045893;positive regulation of transcription, DNA-dependent;0.013422602878145!GO:0003684;damaged DNA binding;0.0135099475169737!GO:0004364;glutathione transferase activity;0.0135587775829702!GO:0035258;steroid hormone receptor binding;0.0136146521225473!GO:0030137;COPI-coated vesicle;0.0137740545569349!GO:0006401;RNA catabolic process;0.0141051767469498!GO:0008139;nuclear localization sequence binding;0.0142165858693215!GO:0009303;rRNA transcription;0.0142165858693215!GO:0000049;tRNA binding;0.0142251978014631!GO:0042158;lipoprotein biosynthetic process;0.0143910694611723!GO:0006749;glutathione metabolic process;0.0143920684645466!GO:0006644;phospholipid metabolic process;0.014397774886555!GO:0051287;NAD binding;0.0148087681488888!GO:0022890;inorganic cation transmembrane transporter activity;0.0148918511936545!GO:0009112;nucleobase metabolic process;0.0151529942524263!GO:0043414;biopolymer methylation;0.0152897978372117!GO:0005862;muscle thin filament tropomyosin;0.0155214207815452!GO:0003678;DNA helicase activity;0.0156136984772812!GO:0051101;regulation of DNA binding;0.0157765700366229!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0158424611329269!GO:0031301;integral to organelle membrane;0.0158817242543163!GO:0046426;negative regulation of JAK-STAT cascade;0.0159074977381153!GO:0006289;nucleotide-excision repair;0.0159479146080483!GO:0051540;metal cluster binding;0.0165724025731305!GO:0051536;iron-sulfur cluster binding;0.0165724025731305!GO:0051098;regulation of binding;0.0167890549437549!GO:0030119;AP-type membrane coat adaptor complex;0.0168206580831661!GO:0016363;nuclear matrix;0.0169633518797071!GO:0004177;aminopeptidase activity;0.017293428176879!GO:0051539;4 iron, 4 sulfur cluster binding;0.0173097540860883!GO:0006383;transcription from RNA polymerase III promoter;0.0173928344492696!GO:0043065;positive regulation of apoptosis;0.0174305127388318!GO:0007033;vacuole organization and biogenesis;0.017510201415887!GO:0006509;membrane protein ectodomain proteolysis;0.0175184836655648!GO:0033619;membrane protein proteolysis;0.0175184836655648!GO:0043068;positive regulation of programmed cell death;0.0175752602079776!GO:0006519;amino acid and derivative metabolic process;0.017650088831142!GO:0006506;GPI anchor biosynthetic process;0.017650088831142!GO:0044255;cellular lipid metabolic process;0.0177582005032634!GO:0065007;biological regulation;0.0181408193682755!GO:0050790;regulation of catalytic activity;0.0182581168542063!GO:0031543;peptidyl-proline dioxygenase activity;0.0190329701739293!GO:0016281;eukaryotic translation initiation factor 4F complex;0.019674764987481!GO:0000096;sulfur amino acid metabolic process;0.0197210083189526!GO:0033559;unsaturated fatty acid metabolic process;0.0197210083189526!GO:0006636;unsaturated fatty acid biosynthetic process;0.0197210083189526!GO:0008652;amino acid biosynthetic process;0.0198033629349657!GO:0001836;release of cytochrome c from mitochondria;0.0199798940917455!GO:0031272;regulation of pseudopodium formation;0.0206158598615676!GO:0031269;pseudopodium formation;0.0206158598615676!GO:0031344;regulation of cell projection organization and biogenesis;0.0206158598615676!GO:0031268;pseudopodium organization and biogenesis;0.0206158598615676!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0206158598615676!GO:0031274;positive regulation of pseudopodium formation;0.0206158598615676!GO:0048471;perinuclear region of cytoplasm;0.0209341319249867!GO:0043492;ATPase activity, coupled to movement of substances;0.0209369653053262!GO:0030384;phosphoinositide metabolic process;0.0209516036073359!GO:0030433;ER-associated protein catabolic process;0.0210349845995384!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0210349845995384!GO:0031418;L-ascorbic acid binding;0.0212306900815597!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0215276912367653!GO:0030125;clathrin vesicle coat;0.0215974624936933!GO:0030665;clathrin coated vesicle membrane;0.0215974624936933!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0216456273741497!GO:0051052;regulation of DNA metabolic process;0.0216906060082851!GO:0019798;procollagen-proline dioxygenase activity;0.0218264987211482!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0219145831955161!GO:0030134;ER to Golgi transport vesicle;0.0219405824064154!GO:0030131;clathrin adaptor complex;0.0219926510646405!GO:0035035;histone acetyltransferase binding;0.0220820956463469!GO:0045926;negative regulation of growth;0.022200937686319!GO:0006739;NADP metabolic process;0.0227972554838018!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0241199585653661!GO:0033239;negative regulation of amine metabolic process;0.0242508541855982!GO:0045763;negative regulation of amino acid metabolic process;0.0242508541855982!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0242508541855982!GO:0008203;cholesterol metabolic process;0.0246978094200821!GO:0030041;actin filament polymerization;0.0248918758249089!GO:0030145;manganese ion binding;0.0250276673962838!GO:0030660;Golgi-associated vesicle membrane;0.0251075681204135!GO:0008047;enzyme activator activity;0.0253101236638227!GO:0003729;mRNA binding;0.0256208004137227!GO:0048468;cell development;0.0265471207953008!GO:0006505;GPI anchor metabolic process;0.0268033052342349!GO:0030508;thiol-disulfide exchange intermediate activity;0.026932196140236!GO:0000792;heterochromatin;0.0271249084858174!GO:0006458;'de novo' protein folding;0.0271519389240912!GO:0051084;'de novo' posttranslational protein folding;0.0271519389240912!GO:0006891;intra-Golgi vesicle-mediated transport;0.0272229595302147!GO:0003756;protein disulfide isomerase activity;0.0276155133719797!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0276155133719797!GO:0030659;cytoplasmic vesicle membrane;0.0277310414256764!GO:0006275;regulation of DNA replication;0.0283924500711059!GO:0016301;kinase activity;0.0285119285943343!GO:0008538;proteasome activator activity;0.0286408624762994!GO:0000775;chromosome, pericentric region;0.0291371482116189!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0295073192420076!GO:0005581;collagen;0.0295954234800322!GO:0005869;dynactin complex;0.0302603645304212!GO:0031124;mRNA 3'-end processing;0.0305377181061621!GO:0005975;carbohydrate metabolic process;0.0305402421762832!GO:0006405;RNA export from nucleus;0.0308544700389575!GO:0000059;protein import into nucleus, docking;0.0310546801700175!GO:0043433;negative regulation of transcription factor activity;0.0310738262662978!GO:0019206;nucleoside kinase activity;0.0310738262662978!GO:0006220;pyrimidine nucleotide metabolic process;0.031839744212688!GO:0000209;protein polyubiquitination;0.0319104147069089!GO:0000030;mannosyltransferase activity;0.0319250577016469!GO:0007088;regulation of mitosis;0.032091464319144!GO:0005996;monosaccharide metabolic process;0.0321494411799812!GO:0008213;protein amino acid alkylation;0.0321522580571305!GO:0006479;protein amino acid methylation;0.0321522580571305!GO:0003746;translation elongation factor activity;0.0321522580571305!GO:0006338;chromatin remodeling;0.032998713902426!GO:0051128;regulation of cellular component organization and biogenesis;0.032998713902426!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0330107535685539!GO:0006007;glucose catabolic process;0.0334146338905745!GO:0006302;double-strand break repair;0.0334146338905745!GO:0022415;viral reproductive process;0.0337330150066918!GO:0019318;hexose metabolic process;0.0339689833456889!GO:0032259;methylation;0.0340552466646511!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0343304076902713!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0348357136819557!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0348357136819557!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0348357136819557!GO:0051716;cellular response to stimulus;0.0358289061504975!GO:0045936;negative regulation of phosphate metabolic process;0.0362051323945418!GO:0007021;tubulin folding;0.0364773712647683!GO:0031529;ruffle organization and biogenesis;0.0368307757838464!GO:0000123;histone acetyltransferase complex;0.0368307757838464!GO:0005832;chaperonin-containing T-complex;0.0395376589139018!GO:0000305;response to oxygen radical;0.0396647154269905!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0405596781606226!GO:0045039;protein import into mitochondrial inner membrane;0.0405596781606226!GO:0043189;H4/H2A histone acetyltransferase complex;0.0416757985037518!GO:0051320;S phase;0.0416971205088304!GO:0009116;nucleoside metabolic process;0.0419876452014891!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0422620779853174!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0422620779853174!GO:0030127;COPII vesicle coat;0.0422620779853174!GO:0012507;ER to Golgi transport vesicle membrane;0.0422620779853174!GO:0030521;androgen receptor signaling pathway;0.0426870048974079!GO:0006611;protein export from nucleus;0.0427800232736803!GO:0048500;signal recognition particle;0.0430187628333579!GO:0006733;oxidoreduction coenzyme metabolic process;0.0432774416765709!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0434406908415351!GO:0006984;ER-nuclear signaling pathway;0.0445512854964493!GO:0005758;mitochondrial intermembrane space;0.0446645228419735!GO:0030911;TPR domain binding;0.0448767346904198!GO:0008629;induction of apoptosis by intracellular signals;0.0459550665648076!GO:0016584;nucleosome positioning;0.0460492489328674!GO:0000287;magnesium ion binding;0.0463978984214391!GO:0006730;one-carbon compound metabolic process;0.0466206149518247!GO:0051085;chaperone cofactor-dependent protein folding;0.0471122012890503!GO:0003923;GPI-anchor transamidase activity;0.0472414757055272!GO:0016255;attachment of GPI anchor to protein;0.0472414757055272!GO:0042765;GPI-anchor transamidase complex;0.0472414757055272!GO:0003711;transcription elongation regulator activity;0.0473691153215164!GO:0016407;acetyltransferase activity;0.048302350422034!GO:0030503;regulation of cell redox homeostasis;0.0488254505886593!GO:0045334;clathrin-coated endocytic vesicle;0.0491481257289238!GO:0050178;phenylpyruvate tautomerase activity;0.0494266644683411
|sample_id=11508
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=esophagus
|top_motifs=GTF2A1,2:2.13038654261;TAL1_TCF{3,4,12}:2.00860276639;PBX1:1.88339149824;ZNF238:1.63548786977;ZNF423:1.58263155071;EBF1:1.54725842689;RXRA_VDR{dimer}:1.43795781861;TFAP4:1.43426770715;HAND1,2:1.43051930575;GZF1:1.31383830607;ESR1:1.3033170909;XCPE1{core}:1.22399419205;GLI1..3:1.20509754846;HOX{A5,B5}:1.20352174166;SRF:1.19243887878;RXR{A,B,G}:1.08992735587;NR5A1,2:1.04538770675;ZIC1..3:1.00712686627;TLX1..3_NFIC{dimer}:0.981473819317;HOX{A6,A7,B6,B7}:0.97949291053;NANOG:0.914010711916;ZNF148:0.878977105263;ESRRA:0.857514078161;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.837419755891;TEAD1:0.836576931595;TFCP2:0.825724589728;NKX3-1:0.825524427227;LHX3,4:0.818511061826;TBP:0.812345182992;bHLH_family:0.773534521912;NR3C1:0.744570394066;ALX4:0.719470720086;TP53:0.682481794401;NR6A1:0.635260157281;SOX5:0.570467081294;TOPORS:0.569678463495;CRX:0.560025797956;SP1:0.550169691092;IKZF1:0.538053949623;RREB1:0.533212256337;PAX5:0.529592273838;STAT5{A,B}:0.498646706922;MYBL2:0.482899727283;FOXQ1:0.474111949868;FOXM1:0.467022286766;GFI1:0.464653174135;NR1H4:0.451920229476;HES1:0.449206504722;LEF1_TCF7_TCF7L1,2:0.440005278378;GTF2I:0.43634823209;TFAP2{A,C}:0.432650306809;NFY{A,B,C}:0.426779563201;SOX17:0.400598981591;DBP:0.375158803111;POU2F1..3:0.36579352254;KLF4:0.342216066764;PATZ1:0.335113136818;MTF1:0.334987678737;GFI1B:0.329490253122;HIC1:0.311621345106;TFAP2B:0.285291227451;E2F1..5:0.230570833895;HNF4A_NR2F1,2:0.206285375115;TBX4,5:0.194323295361;HSF1,2:0.191885047629;LMO2:0.189882813416;TFDP1:0.185886606004;ZBTB6:0.165967124228;HNF1A:0.146447626069;PAX1,9:0.135522357256;AR:0.121434532456;TEF:0.0951435904681;NFE2L2:0.0918368727075;FOXL1:0.0914583962866;BACH2:0.0724267195342;MEF2{A,B,C,D}:0.0715830740396;ZNF143:0.070038622957;MZF1:0.0697499026747;NKX2-3_NKX2-5:0.0499355449599;GCM1,2:0.0348041299365;JUN:0.0324554710837;MAZ:0.0291335826788;ZNF384:0.0232118745208;REST:0.0033666709502;FOS_FOS{B,L1}_JUN{B,D}:-0.00710138187246;HOXA9_MEIS1:-0.00834627231806;CDC5L:-0.0217432221389;MYOD1:-0.0330104734062;YY1:-0.033852582021;PPARG:-0.0341190769105;NANOG{mouse}:-0.0404791596011;RORA:-0.0746238071918;STAT2,4,6:-0.0807156358788;SPZ1:-0.0927740861978;POU3F1..4:-0.0939178488271;PAX8:-0.0977710244943;RFX1:-0.127532879678;NFE2:-0.128946952109;HLF:-0.146675297876;CEBPA,B_DDIT3:-0.147560479329;PRRX1,2:-0.148541944868;NFKB1_REL_RELA:-0.15020819167;RUNX1..3:-0.160257138915;CUX2:-0.176101866156;SOX{8,9,10}:-0.18445220309;POU5F1:-0.187697649048;UFEwm:-0.189366515833;POU6F1:-0.204694597043;OCT4_SOX2{dimer}:-0.206340836596;NFIX:-0.208542388547;PAX3,7:-0.214924048672;ARID5B:-0.219461543353;NKX3-2:-0.235093497314;ONECUT1,2:-0.239844095781;NFE2L1:-0.249257680812;XBP1:-0.260403708097;GATA6:-0.265340653491;MAFB:-0.267925639274;T:-0.277795647129;ATF6:-0.296207910543;FOSL2:-0.318893706744;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.341415005119;AHR_ARNT_ARNT2:-0.347015952855;POU1F1:-0.362668059292;ADNP_IRX_SIX_ZHX:-0.376132419724;MTE{core}:-0.38619767928;MYB:-0.392121461387;FOXA2:-0.416296525904;ETS1,2:-0.4211425921;VSX1,2:-0.427540310165;NHLH1,2:-0.442930454499;PITX1..3:-0.456850513611;NKX2-2,8:-0.458130705008;SNAI1..3:-0.471645600138;EGR1..3:-0.485915968289;MYFfamily:-0.49346339124;FOX{F1,F2,J1}:-0.501413575018;SPIB:-0.506037880431;HMX1:-0.526046347456;HIF1A:-0.548357702892;NRF1:-0.554833490971;MED-1{core}:-0.563897304138;NKX6-1,2:-0.564431054133;TLX2:-0.5771551958;RFX2..5_RFXANK_RFXAP:-0.588223540713;FOX{I1,J2}:-0.614137842311;ELK1,4_GABP{A,B1}:-0.617006782961;ATF2:-0.666131679141;SMAD1..7,9:-0.667677283385;PAX2:-0.677581225203;IRF1,2:-0.687512025696;FOXD3:-0.693971750516;NKX2-1,4:-0.695046951868;PRDM1:-0.706836175434;FOX{D1,D2}:-0.718788008307;ZEB1:-0.724330646875;EN1,2:-0.730712593611;NFIL3:-0.733579031775;NFATC1..3:-0.748916987732;EP300:-0.822863620483;SPI1:-0.825810394395;PDX1:-0.835860125262;IRF7:-0.838147470581;PAX4:-0.84208193219;FOXP3:-0.853940984254;TGIF1:-0.866800171848;DMAP1_NCOR{1,2}_SMARC:-0.894361039238;CREB1:-0.935236638469;AIRE:-0.949256570057;HOX{A4,D4}:-0.96484483054;EVI1:-0.966611047261;GATA4:-0.972615795779;ELF1,2,4:-0.985254948005;ZFP161:-1.02895001092;BREu{core}:-1.04080507219;ATF4:-1.06545808529;FOXP1:-1.08442177575;FOXO1,3,4:-1.08658285484;ATF5_CREB3:-1.09343714972;SOX2:-1.10496702874;SREBF1,2:-1.15249811267;CDX1,2,4:-1.19658217111;PAX6:-1.19875420553;BPTF:-1.20232948518;HMGA1,2:-1.34159984671;STAT1,3:-1.35884123628;HBP1_HMGB_SSRP1_UBTF:-1.37470318239;ZBTB16:-1.65816663422;ALX1:-1.71414947222;IKZF2:-1.78193827745;RBPJ:-1.9889659868;FOXN1:-2.02404463187
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11508-119G5;search_select_hide=table117:FF:11508-119G5
}}
}}

Latest revision as of 18:05, 4 June 2020

Name:Smooth Muscle Cells - Esophageal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11324
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueesophagus
dev stageNA
sexNA
ageNA
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:575
catalog numberSC2715
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004907
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11324 CAGE DRX008489 DRR009361
Accession ID Hg19

Library idBAMCTSS
CNhs11324 DRZ000786 DRZ002171
Accession ID Hg38

Library idBAMCTSS
CNhs11324 DRZ012136 DRZ013521
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004907
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.TAGCTT sRNA-Seq DRX037116 DRR041482
Accession ID Hg19

Library idBAMCTSS
SRhi10008.TAGCTT DRZ007124


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0557
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.00953
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.296
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.136
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.453
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0636
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.172
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.296
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.296
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.232
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.172
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.656
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.172
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.534
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.344
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.296
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.391
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.391
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0537
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11324

Jaspar motifP-value
MA0002.20.692
MA0003.10.307
MA0004.10.298
MA0006.10.472
MA0007.10.0137
MA0009.10.257
MA0014.10.946
MA0017.10.244
MA0018.20.0566
MA0019.10.94
MA0024.10.611
MA0025.10.567
MA0027.10.623
MA0028.10.112
MA0029.10.421
MA0030.10.151
MA0031.10.0388
MA0035.20.235
MA0038.10.00442
MA0039.20.389
MA0040.10.271
MA0041.10.426
MA0042.10.87
MA0043.10.0745
MA0046.10.0214
MA0047.20.72
MA0048.10.376
MA0050.10.00213
MA0051.10.00817
MA0052.10.0552
MA0055.10.00979
MA0057.10.352
MA0058.10.378
MA0059.10.23
MA0060.12.06037e-5
MA0061.10.616
MA0062.28.94233e-4
MA0065.20.0709
MA0066.10.401
MA0067.10.0155
MA0068.10.619
MA0069.10.618
MA0070.10.0121
MA0071.10.0767
MA0072.10.737
MA0073.10.871
MA0074.10.449
MA0076.10.0226
MA0077.10.515
MA0078.10.81
MA0079.20.993
MA0080.26.19773e-6
MA0081.10.0296
MA0083.11.28316e-6
MA0084.10.632
MA0087.10.442
MA0088.10.194
MA0090.10.0021
MA0091.18.84785e-4
MA0092.10.216
MA0093.10.34
MA0099.20.161
MA0100.10.333
MA0101.10.761
MA0102.20.308
MA0103.10.958
MA0104.20.872
MA0105.10.565
MA0106.10.166
MA0107.10.647
MA0108.28.00952e-11
MA0111.10.382
MA0112.20.0168
MA0113.10.00632
MA0114.10.0755
MA0115.10.524
MA0116.10.226
MA0117.10.452
MA0119.10.144
MA0122.10.605
MA0124.10.799
MA0125.10.0963
MA0131.10.477
MA0135.10.225
MA0136.17.72742e-7
MA0137.20.0651
MA0138.20.465
MA0139.10.804
MA0140.10.24
MA0141.10.0117
MA0142.10.515
MA0143.10.245
MA0144.10.391
MA0145.10.226
MA0146.10.0288
MA0147.10.695
MA0148.10.484
MA0149.10.599
MA0150.10.666
MA0152.10.818
MA0153.10.0579
MA0154.10.172
MA0155.10.0798
MA0156.14.25189e-5
MA0157.10.17
MA0159.10.946
MA0160.10.163
MA0162.10.154
MA0163.10.174
MA0164.10.751
MA0258.10.0395
MA0259.10.861



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11324

Novel motifP-value
10.925
100.615
1000.13
1010.288
1020.62
1030.897
1040.127
1050.029
1060.118
1070.0328
1080.681
1090.0569
110.0414
1100.0978
1110.725
1120.626
1130.93
1140.948
1150.929
1160.0473
1170.828
1180.603
1190.854
120.371
1200.523
1210.266
1220.789
1230.0465
1240.406
1250.284
1260.531
1270.866
1280.346
1290.808
130.289
1300.177
1310.683
1320.548
1330.264
1340.161
1350.285
1360.842
1370.073
1380.0357
1390.715
140.906
1400.567
1410.563
1420.11
1430.376
1440.441
1450.284
1460.254
1470.379
1480.379
1490.317
150.673
1500.496
1510.539
1520.108
1530.069
1540.212
1550.395
1560.473
1570.282
1580.18
1590.886
160.168
1600.0544
1610.244
1620.0647
1630.954
1640.637
1650.0801
1660.931
1670.149
1680.618
1690.0884
170.158
180.242
190.0968
20.451
200.56
210.883
220.105
230.585
240.54
250.565
260.00642
270.476
280.146
290.986
30.78
300.127
310.357
321.95543e-6
330.436
340.0913
350.575
360.661
370.593
380.438
390.484
40.438
400.00547
410.265
420.568
430.274
440.65
450.344
460.177
470.23
480.108
490.177
50.734
500.32
510.328
520.521
530.673
540.636
550.606
560.184
570.514
580.342
590.052
60.375
600.54
610.652
620.497
630.317
640.107
650.0615
660.203
670.948
680.0603
690.15
70.728
700.861
710.0728
720.584
730.0642
740.745
750.696
760.633
770.0306
780.576
790.378
80.0288
800.827
810.852
820.692
830.857
840.377
850.373
860.905
870.27
880.18
890.291
90.176
900.0254
910.359
920.426
930.538
940.203
950.343
960.953
970.545
980.629
996.57564e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11324


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002599 (smooth muscle cell of the esophagus)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001043 (esophagus)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001041 (foregut)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000182 (human esophageal smooth muscle cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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