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{{f5samples
{{f5samples
|id=FF:11532-120A2
|DRA_sample_Accession=CAGE@SAMD00005165
|name=Trabecular Meshwork Cells, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005165
|sample_id=11532
|accession_numbers=CAGE;DRX008519;DRR009391;DRZ000816;DRZ002201;DRZ012166;DRZ013551
|rna_tube_id=120A2
|accession_numbers_RNASeq=sRNA-Seq;DRX037123;DRR041489;DRZ007131
|rna_box=120
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0002203,UBERON:0001768,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0005969,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230,UBERON:0001009,UBERON:0003956
|rna_position=A2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002367
|sample_cell_lot=lot:2584
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=
|rna_catalog_number=SC6595
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=eye
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.70000
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=trabecular meshwork cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.46000
|sample_note=
|profile_hcage=,LSID769,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10008,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000115,CL:0000144,CL:0000213,CL:0000215,CL:0000220,CL:0000222,CL:0000255,CL:0000548,CL:0002078,CL:0002321,CL:0002367,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000019,UBERON:0000020,UBERON:0000033,UBERON:0000047,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000970,UBERON:0001009,UBERON:0001032,UBERON:0001062,UBERON:0001444,UBERON:0001456,UBERON:0001768,UBERON:0001801,UBERON:0002049,UBERON:0002104,UBERON:0002200,UBERON:0002203,UBERON:0003956,UBERON:0004456,UBERON:0004535,UBERON:0005969,UBERON:0006876,UBERON:0007798
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000188
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.01!102.08!TCF21;;chr9:132427883..132427951,+!p2@PRRX2!1.87!72.86!PRRX2;;chr16:86544113..86544145,+!p1@FOXF1!1.86!87.28!FOXF1;;chr6:34204921..34204939,+!p3@HMGA1!1.82!1811.98!HMGA1;;chr7:19157248..19157268,-!p1@TWIST1!1.67!121.43!TWIST1;;chr9:132427972..132428056,+!p1@PRRX2!1.60!50.09!PRRX2;;chr4:111544219..111544240,-!p1@PITX2!1.56!35.67!PITX2;;chr5:2751762..2751784,-!p1@IRX2!1.50!30.74!IRX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.50!30.36!TFAP2B;;chr2:239756671..239756732,+!p1@TWIST2!1.48!91.07!TWIST2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.47!28.84!POU3F3;;chr2:239756739..239756755,+!p2@TWIST2!1.44!45.16!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!1.43!68.68!HMGA2;;chr3:128206762..128206781,-!p2@GATA2!1.34!125.61!GATA2;;chr11:46299199..46299233,+!p1@CREB3L1!1.34!103.98!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.30!25.42!PRRX1;;chr3:128212033..128212051,-!p1@GATA2!1.29!18.59!GATA2;;chr19:46801639..46801699,+!p1@HIF3A!1.27!17.46!HIF3A;;chr4:111558135..111558198,-!p2@PITX2!1.26!17.08!PITX2;;chr9:129376201..129376225,+!p1@LMX1B!1.24!16.32!LMX1B;;chr9:129376233..129376251,+!p2@LMX1B!1.21!15.18!LMX1B;;chr20:42543441..42543497,+!p1@TOX2!1.17!61.10!TOX2;;chr17:41622925..41622976,-!p3@ETV4!1.17!20.87!ETV4;;chr1:170632285..170632309,+!p1@PRRX1!1.17!15.56!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.15!287.26!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.15!22.39!CREB3L1;;chr17:41622765..41622821,-!p2@ETV4!1.14!19.73!ETV4;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.32!TFAP2C;;chr6:1389789..1389821,+!p1@FOXF2!1.13!17.08!FOXF2;;chr14:74256787..74256858,-!p6@C14orf43!1.13!12.52!C14orf43;;chr17:41623009..41623053,-!p4@ETV4!1.10!18.59!ETV4;;chr6:85474299..85474324,-!p1@TBX18!1.09!20.11!TBX18;;chr17:41623692..41623715,-!p1@ETV4!1.08!47.05!ETV4;;chr19:45260775..45260838,+!p5@BCL3!1.08!14.42!BCL3;;chr2:5832508..5832524,+!p1@SOX11!1.07!10.63!SOX11;;chr17:59477233..59477263,+!p1@TBX2!1.06!33.01!TBX2;;chr15:57511609..57511651,+!p2@TCF12!1.05!17.46!TCF12;;chr5:3595977..3595999,+!p1@IRX1!1.05!10.25!IRX1;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.53!FOXC2;;chr20:42543506..42543549,+!p2@TOX2!1.02!23.15!TOX2;;chr17:41622731..41622764,-!p5@ETV4!1.02!9.49!ETV4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.02!9.49!POU3F3;;chr12:2986206..2986258,-!p2@FOXM1!1.00!55.02!FOXM1;;chr3:138665937..138665968,-!p1@FOXL2!1.00!9.11!FOXL2;;chr4:111544254..111544270,-!p3@PITX2!1.00!9.11!PITX2;;chr14:61116183..61116208,-!p1@SIX1!0.99!33.77!SIX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.97!14.04!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!0.95!37.57!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.95!15.56!HMGA2;;chr18:52969674..52969685,-!p24@TCF4!0.95!7.97!TCF4;;chr6:85473156..85473210,-!p2@TBX18!0.94!9.49!TBX18;;chr17:41622834..41622883,-!p6@ETV4!0.93!9.11!ETV4;;chr18:52969844..52969895,-!p27@TCF4!0.93!7.59!TCF4;;chr5:3595934..3595957,+!p2@IRX1!0.93!7.59!IRX1;;chr12:2986275..2986363,-!p1@FOXM1!0.91!74.00!FOXM1;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.63!HMGA2;;chr19:38720294..38720348,-!p1@DPF1!0.91!9.11!DPF1;;chr5:92918919..92918942,+!p1@NR2F1!0.90!32.26!NR2F1;;chr20:42295713..42295738,+!p2@MYBL2!0.89!41.74!MYBL2;;chr11:47279504..47279563,+!p1@NR1H3!0.89!15.94!NR1H3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.89!7.21!GLIS1;;chr4:299227..299272,-!p1@ZNF732!0.89!6.83!ZNF732;;chr5:2751785..2751808,-!p2@IRX2!0.89!6.83!IRX2;;chr6:34204973..34204990,+!p4@HMGA1!0.88!93.35!HMGA1;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.59!OSR1;;chr6:1312325..1312340,+!p1@FOXQ1!0.88!11.00!FOXQ1;;chr6:50786571..50786590,+!p2@TFAP2B!0.87!6.45!TFAP2B;;chr8:60031809..60031835,-!p4@TOX!0.85!7.97!TOX;;chr17:41623075..41623101,-!p9@ETV4!0.85!7.21!ETV4;;chr15:67418119..67418162,+!p5@SMAD3!0.85!6.83!SMAD3;;chr12:85673977..85674015,+!p1@ALX1!0.85!6.07!ALX1;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!0.85!6.07!POU3F3;;chr20:42295745..42295765,+!p1@MYBL2!0.83!100.18!MYBL2;;chr17:59477197..59477212,+!p2@TBX2!0.83!10.25!TBX2;;chr5:3595961..3595975,+!p3@IRX1!0.83!5.69!IRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.82!14.80!TWIST1;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.35!IRX5;;chr11:113930425..113930471,+!p1@ZBTB16!0.82!8.35!ZBTB16;;chr6:31126291..31126399,+!p1@TCF19!0.81!55.40!TCF19;;chr2:121493425..121493474,+!p1@GLI2!0.81!12.52!GLI2;;chr12:53614115..53614154,-!p1@RARG!0.80!30.74!RARG;;chr11:63684602..63684664,-!p1@RCOR2!0.80!11.00!RCOR2;;chr16:54964899..54964914,+!p2@IRX5!0.80!5.31!IRX5;;chr17:17726907..17726958,-!p2@SREBF1!0.79!34.53!SREBF1;;chr11:65686952..65686975,+!p5@DRAP1!0.79!31.12!DRAP1;;chr1:164528445..164528459,+!p2@PBX1!0.79!17.46!PBX1;;chr7:44143978..44143989,+!p2@AEBP1!0.79!9.87!AEBP1;;chr4:4861385..4861398,+!p1@MSX1!0.78!15.94!MSX1;;chr5:134369905..134369972,-!p1@PITX1!0.78!7.97!PITX1;;chr3:185826855..185826911,-!p1@ETV5!0.77!148.75!ETV5;;chr1:8483878..8483907,-!p4@RERE!0.77!20.49!RERE;;chr12:66218378..66218401,+!p6@HMGA2!0.77!7.97!HMGA2;;chr10:119302232..119302265,+!p1@EMX2!0.77!4.93!EMX2;;chr1:170632250..170632277,+!p7@PRRX1!0.77!4.93!PRRX1;;chr17:41622982..41623001,-!p11@ETV4!0.77!4.93!ETV4;;chr8:60031619..60031676,-!p1@TOX!0.76!11.00!TOX;;chr12:66218443..66218461,+!p8@HMGA2!0.75!6.07!HMGA2;;chr5:92919068..92919082,+!p5@NR2F1!0.75!5.69!NR2F1;;chr11:46299186..46299195,+!p3@CREB3L1!0.75!5.31!CREB3L1;;chr11:65667846..65667868,-!p1@FOSL1!0.74!133.57!FOSL1;;chr3:12329397..12329433,+!p2@PPARG!0.74!11.00!PPARG;;chr5:134369879..134369898,-!p2@PITX1!0.74!4.55!PITX1;;chr6:34204672..34204692,+!p1@HMGA1!0.73!559.34!HMGA1;;chr17:70117153..70117174,+!p1@SOX9!0.73!50.85!SOX9;;chr17:1959369..1959388,+!p2@HIC1!0.73!12.52!HIC1;;chr16:73093174..73093209,-!p3@ZFHX3!0.73!6.07!ZFHX3;;chr12:66218836..66218888,+!p1@HMGA2!0.72!44.40!HMGA2;;chr19:49865646..49865718,-!p1@TEAD2!0.72!40.60!TEAD2;;chr5:176738887..176738934,-!p1@MXD3!0.72!31.88!MXD3;;chr3:12329358..12329393,+!p3@PPARG!0.72!11.38!PPARG;;chr6:10415276..10415341,-!p2@TFAP2A!0.72!5.31!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!0.72!4.93!BNC1;;chr1:170633262..170633285,+!p3@PRRX1!0.72!4.93!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!0.72!4.55!HMGA2;;chr12:115121962..115121987,-!p1@TBX3!0.71!38.71!TBX3;;chr12:7079780..7079791,-!p2@PHB2!0.71!23.91!PHB2;;chr11:65667884..65667895,-!p2@FOSL1!0.71!17.84!FOSL1;;chr7:42276822..42276895,-!p2@GLI3!0.71!13.66!GLI3;;chr8:60031934..60031986,-!p6@TOX!0.71!4.17!TOX;;chr10:119302508..119302559,+!p5@EMX2!0.71!4.17!EMX2;;chr15:67418177..67418204,+!p9@SMAD3!0.71!4.17!SMAD3;;chr16:86600870..86600921,+!p2@FOXC2!0.71!4.17!FOXC2;;chr5:321810..321877,+!p1@AHRR!0.70!14.04!AHRR;;chr14:21994337..21994442,-!p1@SALL2!0.70!12.14!SALL2;;chr15:67418047..67418093,+!p4@SMAD3!0.70!5.31!SMAD3;;chr9:102584262..102584276,+!p1@NR4A3!0.69!9.49!NR4A3;;chr1:23857698..23857733,-!p1@E2F2!0.69!7.59!E2F2;;chrX:66763815..66763854,+!p2@AR!0.69!5.31!AR;;chr12:66218003..66218018,+!p9@HMGA2!0.69!4.93!HMGA2;;chr19:1592714..1592762,-!p1@MBD3!0.68!32.63!MBD3;;chr17:59477275..59477286,+!p3@TBX2!0.68!5.31!TBX2;;chr2:96012397..96012417,+!p3@KCNIP3!0.68!3.79!KCNIP3;;chr11:46299443..46299459,+!p4@CREB3L1!0.68!3.79!CREB3L1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.68!3.79!RUNX1T1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.68!3.79!RUNX1T1;;chr19:6424783..6424802,-!p2@KHSRP!0.67!86.90!KHSRP;;chr8:60031682..60031710,-!p2@TOX!0.67!6.45!TOX;;chr17:42295777..42295816,-!p7@UBTF!0.67!4.55!UBTF;;chr19:3366570..3366619,+!p1@NFIC!0.66!133.57!NFIC;;chr6:1610293..1610310,+!p1@FOXC1!0.66!6.45!FOXC1;;chr20:50721803..50721857,-!p2@ZFP64!0.66!6.07!ZFP64;;chr3:52001448..52001478,-!p2@PCBP4!0.65!56.92!PCBP4;;chr1:151032860..151032918,+!p1@MLLT11!0.65!47.81!MLLT11;;chr19:13134772..13134822,+!p2@NFIX!0.64!5.31!NFIX;;chr19:50542543..50542548,+!p2@ZNF473!0.64!3.42!ZNF473;;chr1:110613238..110613272,-!p1@ALX3!0.64!3.42!ALX3;;chr6:50786479..50786490,+!p6@TFAP2B!0.64!3.42!TFAP2B;;chr4:111558118..111558133,-!p5@PITX2!0.64!3.42!PITX2;;chr11:44331576..44331650,-!p1@ALX4!0.64!3.42!ALX4;;chr9:102584159..102584174,+!p2@NR4A3!0.63!6.45!NR4A3;;chr17:1958388..1958404,+!p1@HIC1!0.62!23.91!HIC1;;chr12:53625966..53626012,-!p2@RARG!0.62!9.49!RARG;;chr11:65686802..65686818,+!p6@DRAP1!0.62!6.07!DRAP1;;chr17:41623667..41623682,-!p8@ETV4!0.62!3.42!ETV4;;chr19:6424813..6424835,-!p1@KHSRP!0.61!230.72!KHSRP;;chr16:4322832..4322907,-!p1@TFAP4!0.61!28.08!TFAP4;;chr5:92918894..92918912,+!p2@NR2F1!0.61!11.76!NR2F1;;chr7:42276787..42276815,-!p1@GLI3!0.61!9.49!GLI3;;chr5:92918768..92918783,+!p8@NR2F1!0.61!3.04!NR2F1;;chr6:10412576..10412599,-!p5@TFAP2A!0.61!3.04!TFAP2A;;chr6:41701581..41701613,-!p2@TFEB!0.61!3.04!TFEB;;chr16:86600458..86600461,+!p3@FOXC2!0.61!3.04!FOXC2;;chr17:8027418..8027432,-!p1@HES7!0.61!3.04!HES7;;chr19:58545454..58545498,+!p1@ZSCAN1!0.61!3.04!ZSCAN1;;chr10:119302645..119302712,+!p3@EMX2!0.61!3.04!EMX2;;chr10:119303078..119303169,+!p2@EMX2!0.61!3.04!EMX2;;chr12:66218420..66218439,+!p12@HMGA2!0.61!3.04!HMGA2;;chr12:85673868..85673881,+!p2@ALX1!0.61!3.04!ALX1;;chr14:64761083..64761101,-!p1@ESR2!0.61!3.04!ESR2;;chr17:42297226..42297246,-!p14@UBTF!0.60!4.55!UBTF;;chr9:77112244..77112262,+!p1@RORB!0.60!3.42!RORB;;chr8:48650715..48650735,-!p1@CEBPD!0.59!450.43!CEBPD;;chr6:34205372..34205412,+!p5@HMGA1!0.59!17.46!HMGA1;;chr19:1652555..1652568,-!p2@TCF3!0.59!14.04!TCF3;;chr6:10412392..10412409,-!p4@TFAP2A!0.59!3.42!TFAP2A;;chr19:1652575..1652621,-!p1@TCF3!0.58!130.92!TCF3;;chr19:3359591..3359667,+!p2@NFIC!0.58!39.09!NFIC;;chr20:306489..306564,+!p1@SOX12!0.58!37.19!SOX12;;chr7:14029283..14029311,-!p1@ETV1!0.58!18.21!ETV1;;chr1:247171316..247171336,-!p3@ZNF695!0.58!4.55!ZNF695;;chr19:49864746..49864780,-!p2@TEAD2!0.58!4.17!TEAD2;;chr1:8938736..8938756,-!p1@ENO1!0.57!3686.20!ENO1;;chr16:29817841..29817865,+!p1@MAZ!0.56!70.20!MAZ;;chr1:8763440..8763460,-!p2@RERE!0.56!16.32!RERE;;chr1:170632137..170632172,+!p10@PRRX1!0.56!2.66!PRRX1;;chr1:2985726..2985752,+!p2@PRDM16!0.56!2.66!PRDM16;;chr6:41701557..41701578,-!p3@TFEB!0.56!2.66!TFEB;;chr6:50789717..50789729,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ZBTB4;;chr18:52969813..52969823,-!p67@TCF4!0.33!1.14!TCF4;;chr19:13106465..13106477,+!p27@NFIX!0.33!1.14!NFIX;;chr19:23299851..23299880,+!p2@ZNF730!0.33!1.14!ZNF730;;chr19:3572758..3572795,+!p7@HMG20B!0.33!1.14!HMG20B;;chr5:92919194..92919204,+!p16@NR2F1!0.33!1.14!NR2F1;;chr6:1312155..1312187,+!p2@FOXQ1!0.33!1.14!FOXQ1;;chr6:50786057..50786069,+!p9@TFAP2B!0.33!1.14!TFAP2B;;chr6:50786547..50786564,+!p3@TFAP2B!0.33!1.14!TFAP2B;;chr6:50789547..50789550,+!p12@TFAP2B!0.33!1.14!TFAP2B;;chr6:50789737..50789746,+!p10@TFAP2B!0.33!1.14!TFAP2B;;chr7:150102756..150102772,+!p5@ZNF775!0.33!1.14!ZNF775;;chr7:42276771..42276782,-!p4@GLI3!0.33!1.14!GLI3;;chr8:60031534..60031553,-!p8@TOX!0.33!1.14!TOX;;chr22:42229100..42229146,+!p1@SREBF2!0.32!187.08!SREBF2;;chrX:53254373..53254406,-!p1@KDM5C!0.32!69.82!KDM5C;;chr19:42759266..42759290,-!p1@ERF!0.32!59.96!ERF;;chr19:19303731..19303783,+!p1@RFXANK!0.32!44.40!RFXANK;;chr2:242576460..242576600,-!p1@THAP4!0.32!28.46!THAP4;;chr19:58400372..58400411,-!p1@ZNF814!0.32!9.11!ZNF814;;chr15:71184724..71184778,-!p1@THAP10!0.32!6.45!THAP10;;chr17:38498594..38498661,+!p2@RARA!0.32!5.69!RARA;;chr2:217277480..217277505,+!p2@SMARCAL1!0.32!5.69!SMARCAL1;;chr4:1873155..1873185,+!p3@WHSC1!0.32!4.55!WHSC1;;chr15:66994663..66994680,+!p1@SMAD6!0.32!3.79!SMAD6;;chr1:8483821..8483845,-!p11@RERE!0.32!3.04!RERE;;chr19:56652686..56652701,+!p3@ZNF444!0.32!2.66!ZNF444;;chr3:32023232..32023273,+!p1@ZNF860!0.32!1.90!ZNF860;;chr19:23299814..23299844,+!p1@ZNF730!0.32!1.52!ZNF730;;chr9:16870659..16870675,-!p2@BNC2!0.32!1.52!BNC2;;chr19:58341656..58341694,+!p5@ZNF587!0.32!1.52!ZNF587;;chr1:6684918..6684936,+!p2@THAP3!0.32!1.52!THAP3;;chr5:124082279..124082319,-!p3@ZNF608!0.32!1.52!ZNF608;;chr7:14029312..14029325,-!p4@ETV1!0.32!1.52!ETV1;;chr7:150065733..150065752,+!p4@REPIN1,p4@ZNF775!0.32!1.52!ZNF775;;chr17:38474489..38474548,+!p1@RARA!0.31!57.68!RARA;;chr11:65687158..65687216,+!p4@DRAP1!0.31!9.87!DRAP1;;chr2:27357446..27357475,-!p2@PREB!0.31!5.69!PREB;;chr7:150945754..150945789,-!p2@SMARCD3!0.31!4.93!SMARCD3;;chr5:76383133..76383186,-!p2@ZBED3!0.31!3.04!ZBED3;;chr2:74375058..74375069,-!p3@BOLA3!0.31!2.66!BOLA3;;chr19:22817119..22817145,+!p1@ZNF492!0.31!2.28!ZNF492;;chr19:47922750..47922795,-!p1@MEIS3!0.31!2.28!MEIS3;;chr1:8483849..8483868,-!p14@RERE!0.31!2.28!RERE;;chr19:58400344..58400364,-!p2@ZNF814!0.31!1.90!ZNF814;;chr3:25469724..25469773,+!p1@RARB!0.31!1.90!RARB;;chr16:54320158..54320200,-!p5@IRX3!0.31!1.90!IRX3;;chrX:66763856..66763896,+!p1@AR!0.31!1.90!AR;;chr17:2304082..2304103,-!p5@MNT!0.31!1.52!MNT;;chr1:35658736..35658754,-!p1@SFPQ!0.30!650.42!SFPQ;;chr12:50478977..50479040,+!p1@SMARCD1!0.30!39.47!SMARCD1;;chr9:35732592..35732640,+!p1@CREB3!0.30!23.53!CREB3;;chr8:37553261..37553282,+!p2@ZNF703!0.30!13.28!ZNF703;;chr5:138609782..138609826,+!p5@MATR3!0.30!11.00!MATR3;;chr18:77160282..77160343,+!p2@NFATC1!0.30!10.63!NFATC1;;chr3:150126759..150126784,+!p2@TSC22D2!0.30!7.59!TSC22D2;;chr7:138666053..138666146,-!p1@KIAA1549!0.30!6.83!KIAA1549;;chr16:31085058..31085078,-!p2@ZNF668!0.30!3.04!ZNF668;;chrX:48900782..48900793,-!p3@TFE3!0.30!2.66!TFE3;;chr1:226595741..226595818,-!p1@PARP1!0.29!91.83!PARP1;;chr2:74374995..74375055,-!p1@BOLA3!0.29!78.55!BOLA3;;chr11:65101305..65101359,+!p1@DPF2!0.29!69.06!DPF2;;chr7:137686791..137686821,-!p1@CREB3L2!0.29!50.85!CREB3L2;;chr2:219524310..219524385,-!p1@ZNF142!0.29!25.05!ZNF142;;chr12:122516646..122516668,+!p1@MLXIP!0.29!23.15!MLXIP;;chr11:47236584..47236679,+!p1@DDB2!0.29!18.97!DDB2;;chr16:29819403..29819442,+!p5@MAZ!0.29!14.04!MAZ;;chr8:10697329..10697365,-!p2@PINX1,p2@SOX7!0.29!11.00!SOX7;;chr9:116638565..116638606,+!p1@ZNF618!0.29!6.83!ZNF618;;chr2:242576641..242576731,-!p2@THAP4!0.29!6.07!THAP4;;chr17:38498402..38498445,+!p3@RARA!0.29!5.69!RARA;;chr19:19516543..19516559,+!p6@GATAD2A!0.29!4.93!GATAD2A;;chr12:6798056..6798102,-!p3@ZNF384!0.29!4.55!ZNF384;;chr1:44679159..44679189,+!p2@DMAP1!0.29!4.17!DMAP1;;chr5:124082322..124082364,-!p1@ZNF608!0.29!3.79!ZNF608;;chr12:53614155..53614187,-!p3@RARG!0.29!2.66!RARG;;chr12:53774035..53774058,+!p4@SP1!0.29!2.66!SP1;;chr1:151032142..151032195,+!p5@MLLT11!0.29!2.66!MLLT11;;chr19:17356436..17356481,-!p3@NR2F6!0.29!2.28!NR2F6;;chr9:16870710..16870763,-!p1@BNC2!0.29!2.28!BNC2;;chr12:6798523..6798548,-!p6@ZNF384!0.29!2.28!ZNF384;;chr12:51566592..51566617,-!p3@TFCP2!0.29!1.90!TFCP2;;chr18:52989081..52989117,-!p7@TCF4!0.29!1.90!TCF4;;chr16:1664146..1664187,+!p2@CRAMP1L!0.29!1.52!CRAMP1L;;chr19:39390652..39390663,+!p3@NFKBIB!0.29!1.52!NFKBIB;;chr5:92918860..92918871,+!p10@NR2F1!0.29!1.14!NR2F1;;chr3:21792585..21792625,-!p2@ZNF385D!0.29!1.14!ZNF385D;;chr1:149858461..149858479,+!p1@BOLA1!0.28!678.50!BOLA1;;chr12:53835508..53835533,+!p1@PRR13,p2@PCBP2!0.28!130.92!PCBP2;;chr15:67358163..67358192,+!p1@SMAD3!0.28!40.22!SMAD3;;chr17:47492236..47492251,-!p1@PHB!0.28!23.53!PHB;;chr6:144329384..144329405,-!p1@PLAGL1!0.28!19.35!PLAGL1;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.28!16.32!ZNF576;;chr17:7387524..7387597,-!p1@ZBTB4!0.28!15.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Line 67: Line 43:
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11532
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.GTCCGC.11532
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|name=Trabecular Meshwork Cells, donor1
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|rna_box=120
|rna_catalog_number=SC6595
|rna_concentration=1.46
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=A2
|rna_rin=9.7
|rna_sample_type=total RNA
|rna_tube_id=120A2
|rna_weight_ug=10
|rnaseq_library_id=SRhi10008.GTCCGC
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=lot:2584
|sample_cell_type=trabecular meshwork cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.5717262072739e-233!GO:0043231;intracellular membrane-bound organelle;9.4460703294274e-191!GO:0043227;membrane-bound organelle;2.60396131167889e-190!GO:0043226;organelle;1.38045072829921e-189!GO:0043229;intracellular organelle;2.04656922792708e-189!GO:0005737;cytoplasm;2.74320911039435e-180!GO:0044422;organelle part;5.68694463336564e-144!GO:0044446;intracellular organelle part;7.78742097094889e-143!GO:0044444;cytoplasmic part;3.62488051893809e-128!GO:0032991;macromolecular complex;2.25059749036537e-91!GO:0044237;cellular metabolic process;8.6928598486756e-91!GO:0044238;primary metabolic process;1.17526477352179e-89!GO:0030529;ribonucleoprotein complex;1.1694014837487e-82!GO:0043170;macromolecule metabolic process;2.12831700294374e-79!GO:0005739;mitochondrion;2.48518231443632e-76!GO:0005634;nucleus;7.14076843713427e-76!GO:0043233;organelle lumen;5.24633994499225e-75!GO:0031974;membrane-enclosed lumen;5.24633994499225e-75!GO:0044428;nuclear part;2.35818020429447e-70!GO:0005515;protein binding;4.41095532687323e-69!GO:0003723;RNA binding;2.03259990266311e-61!GO:0005840;ribosome;1.49912885810594e-52!GO:0044429;mitochondrial part;4.42072511740023e-52!GO:0031090;organelle membrane;1.40422362204199e-48!GO:0003735;structural constituent of ribosome;6.88539476217537e-46!GO:0006412;translation;1.60693946324021e-45!GO:0016043;cellular component organization and biogenesis;1.65537649193313e-45!GO:0043234;protein complex;6.35653846252354e-45!GO:0019538;protein metabolic process;4.49825033020559e-44!GO:0043283;biopolymer metabolic process;5.45261452368622e-44!GO:0031981;nuclear lumen;7.08214329533507e-44!GO:0009058;biosynthetic process;1.94326471094253e-43!GO:0031967;organelle envelope;3.25192605664e-43!GO:0006396;RNA processing;3.68291506456649e-43!GO:0031975;envelope;8.05572983636097e-43!GO:0044249;cellular biosynthetic process;9.97714424741242e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.75268815006813e-40!GO:0033279;ribosomal subunit;5.58694854303686e-40!GO:0044260;cellular macromolecule metabolic process;1.41137339951905e-39!GO:0044267;cellular protein metabolic process;6.93085552728233e-39!GO:0010467;gene expression;4.30294708081982e-38!GO:0009059;macromolecule biosynthetic process;3.85955273623754e-36!GO:0006996;organelle organization and biogenesis;1.23107136360857e-35!GO:0043228;non-membrane-bound organelle;5.86875449513718e-35!GO:0043232;intracellular non-membrane-bound organelle;5.86875449513718e-35!GO:0005829;cytosol;2.53898564167995e-34!GO:0006259;DNA metabolic process;2.87190183182563e-34!GO:0005740;mitochondrial envelope;8.9084611566702e-34!GO:0015031;protein transport;2.03832170778975e-33!GO:0033036;macromolecule localization;3.11362566254441e-33!GO:0016071;mRNA metabolic process;9.75764976662641e-33!GO:0031966;mitochondrial membrane;1.05328685639925e-31!GO:0008104;protein localization;2.49859710115579e-30!GO:0045184;establishment of protein localization;3.54976929639774e-30!GO:0019866;organelle inner membrane;4.22013550738645e-30!GO:0008380;RNA splicing;7.62400509547882e-30!GO:0065003;macromolecular complex assembly;1.69080433960627e-29!GO:0046907;intracellular transport;1.03823601194418e-28!GO:0005743;mitochondrial inner membrane;1.53637480772649e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.49217864984169e-28!GO:0006397;mRNA processing;7.33019964031227e-28!GO:0022607;cellular component assembly;2.00426951212192e-26!GO:0005654;nucleoplasm;4.11071992553473e-26!GO:0007049;cell cycle;6.17749572100541e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.98006638949618e-25!GO:0006886;intracellular protein transport;3.73658070271548e-24!GO:0044445;cytosolic part;1.03922088445876e-22!GO:0031980;mitochondrial lumen;1.12819684669467e-22!GO:0005759;mitochondrial matrix;1.12819684669467e-22!GO:0044451;nucleoplasm part;4.03206290961312e-22!GO:0005681;spliceosome;1.49983116352248e-21!GO:0015934;large ribosomal subunit;1.68695919303236e-21!GO:0003676;nucleic acid binding;4.51929181881643e-21!GO:0022402;cell cycle process;1.01649235382822e-20!GO:0000166;nucleotide binding;4.67062174840888e-20!GO:0000278;mitotic cell cycle;5.87221102532384e-20!GO:0015935;small ribosomal subunit;1.60282894411748e-19!GO:0006119;oxidative phosphorylation;2.62133560729372e-19!GO:0044455;mitochondrial membrane part;2.65269940159326e-19!GO:0005730;nucleolus;6.49637252515436e-19!GO:0048770;pigment granule;3.01112135218531e-18!GO:0042470;melanosome;3.01112135218531e-18!GO:0006457;protein folding;3.15542307252641e-18!GO:0005694;chromosome;1.21157710135556e-17!GO:0012505;endomembrane system;1.99285789631908e-17!GO:0005783;endoplasmic reticulum;6.65188253356068e-17!GO:0051649;establishment of cellular localization;9.24063199461883e-17!GO:0016462;pyrophosphatase activity;9.91796289661006e-17!GO:0044427;chromosomal part;1.09707600776799e-16!GO:0051186;cofactor metabolic process;1.15328890798627e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.19492163247012e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;1.35718936482378e-16!GO:0016874;ligase activity;1.65974974191225e-16!GO:0051641;cellular localization;1.67485640855464e-16!GO:0051276;chromosome organization and biogenesis;1.69655763505998e-16!GO:0017111;nucleoside-triphosphatase activity;3.14524648582662e-16!GO:0016070;RNA metabolic process;4.87103048777704e-16!GO:0005746;mitochondrial respiratory chain;6.36058823210558e-16!GO:0008134;transcription factor binding;7.69930392894246e-16!GO:0006974;response to DNA damage stimulus;1.27834881332472e-15!GO:0005761;mitochondrial ribosome;1.78473950936643e-15!GO:0000313;organellar ribosome;1.78473950936643e-15!GO:0022403;cell cycle phase;2.64114307320818e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.67131520270732e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.03687974788101e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.06956653777617e-14!GO:0000087;M phase of mitotic cell cycle;1.3758690743868e-14!GO:0007067;mitosis;1.55075363628131e-14!GO:0044432;endoplasmic reticulum part;1.64520747092749e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.28145148651087e-14!GO:0003954;NADH dehydrogenase activity;2.28145148651087e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.28145148651087e-14!GO:0006323;DNA packaging;5.75982993096724e-14!GO:0022618;protein-RNA complex assembly;8.54981410191286e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.57621441570851e-14!GO:0044265;cellular macromolecule catabolic process;1.14803513485282e-13!GO:0006605;protein targeting;1.3119498051743e-13!GO:0032553;ribonucleotide binding;1.47178276977314e-13!GO:0032555;purine ribonucleotide binding;1.47178276977314e-13!GO:0017076;purine nucleotide binding;1.60785352925443e-13!GO:0006260;DNA replication;1.98690866427132e-13!GO:0006512;ubiquitin cycle;2.61329712704079e-13!GO:0006281;DNA repair;3.4603679399883e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.83898497485602e-13!GO:0042773;ATP synthesis coupled electron transport;8.83898497485602e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;9.21146213707565e-13!GO:0000375;RNA splicing, via transesterification reactions;9.21146213707565e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.21146213707565e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.45984924255357e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.63343213804512e-12!GO:0045271;respiratory chain complex I;1.63343213804512e-12!GO:0005747;mitochondrial respiratory chain complex I;1.63343213804512e-12!GO:0051082;unfolded protein binding;1.83623742945463e-12!GO:0005794;Golgi apparatus;2.31886071791744e-12!GO:0006732;coenzyme metabolic process;2.45911004968835e-12!GO:0044248;cellular catabolic process;2.86670012709384e-12!GO:0005524;ATP binding;2.9456536548304e-12!GO:0043285;biopolymer catabolic process;3.29739361786345e-12!GO:0009057;macromolecule catabolic process;3.70775052604538e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.97440082387289e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.30449981660855e-12!GO:0032559;adenyl ribonucleotide binding;4.64486970186896e-12!GO:0008135;translation factor activity, nucleic acid binding;5.61770347943198e-12!GO:0043412;biopolymer modification;5.879462345081e-12!GO:0065004;protein-DNA complex assembly;6.10384857988394e-12!GO:0009719;response to endogenous stimulus;6.2256744019758e-12!GO:0030554;adenyl nucleotide binding;7.01470860552446e-12!GO:0042254;ribosome biogenesis and assembly;8.59855542498673e-12!GO:0000279;M phase;8.90371024168986e-12!GO:0000785;chromatin;9.97272846782527e-12!GO:0006333;chromatin assembly or disassembly;1.10148830216295e-11!GO:0051726;regulation of cell cycle;1.72116779650946e-11!GO:0000074;regulation of progression through cell cycle;2.53551796392425e-11!GO:0051301;cell division;3.67406286231467e-11!GO:0009055;electron carrier activity;3.76284045189296e-11!GO:0003712;transcription cofactor activity;5.09819536703909e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;5.87684158430199e-11!GO:0019941;modification-dependent protein catabolic process;8.52206858477308e-11!GO:0043632;modification-dependent macromolecule catabolic process;8.52206858477308e-11!GO:0006511;ubiquitin-dependent protein catabolic process;8.77298447343895e-11!GO:0044257;cellular protein catabolic process;1.11230190168361e-10!GO:0006464;protein modification process;1.46283188618337e-10!GO:0005635;nuclear envelope;1.51420877893539e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.71020415834562e-10!GO:0006334;nucleosome assembly;1.76735190602428e-10!GO:0006399;tRNA metabolic process;1.82668114487222e-10!GO:0005793;ER-Golgi intermediate compartment;3.04773737350124e-10!GO:0005789;endoplasmic reticulum membrane;3.04773737350124e-10!GO:0031497;chromatin assembly;3.46299206776906e-10!GO:0044453;nuclear membrane part;3.74948369370703e-10!GO:0006913;nucleocytoplasmic transport;4.56712611746492e-10!GO:0016604;nuclear body;4.76919774857461e-10!GO:0048193;Golgi vesicle transport;6.82641631355145e-10!GO:0012501;programmed cell death;8.49573127912829e-10!GO:0031965;nuclear membrane;9.21453511212123e-10!GO:0051169;nuclear transport;1.22541091799323e-09!GO:0006915;apoptosis;1.57670488824904e-09!GO:0006366;transcription from RNA polymerase II promoter;1.57670488824904e-09!GO:0030163;protein catabolic process;2.01869763826773e-09!GO:0003743;translation initiation factor activity;2.87693186218772e-09!GO:0043687;post-translational protein modification;4.91677451967773e-09!GO:0030532;small nuclear ribonucleoprotein complex;7.6070448816272e-09!GO:0065002;intracellular protein transport across a membrane;7.70511807345967e-09!GO:0051188;cofactor biosynthetic process;8.84778478652515e-09!GO:0009259;ribonucleotide metabolic process;9.19890013818125e-09!GO:0016740;transferase activity;9.96605578776308e-09!GO:0006163;purine nucleotide metabolic process;1.16430318934955e-08!GO:0008219;cell death;1.6904629962937e-08!GO:0016265;death;1.6904629962937e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.95166738253167e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.95166738253167e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.95166738253167e-08!GO:0005643;nuclear pore;2.36503910717186e-08!GO:0017038;protein import;2.47373224833374e-08!GO:0042623;ATPase activity, coupled;2.78271800136425e-08!GO:0009150;purine ribonucleotide metabolic process;3.34443172699203e-08!GO:0016192;vesicle-mediated transport;3.61485261698885e-08!GO:0006364;rRNA processing;3.76582939335407e-08!GO:0006413;translational initiation;4.09605009384382e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.35523969898523e-08!GO:0006164;purine nucleotide biosynthetic process;5.18012876562891e-08!GO:0016887;ATPase activity;5.55357343411072e-08!GO:0016491;oxidoreductase activity;5.9633967380767e-08!GO:0016568;chromatin modification;6.14131850639912e-08!GO:0048523;negative regulation of cellular process;6.1632880079794e-08!GO:0043038;amino acid activation;6.8197423916715e-08!GO:0006418;tRNA aminoacylation for protein translation;6.8197423916715e-08!GO:0043039;tRNA aminoacylation;6.8197423916715e-08!GO:0006446;regulation of translational initiation;8.19878042930606e-08!GO:0009260;ribonucleotide biosynthetic process;8.41165346740177e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.43260093349156e-08!GO:0016072;rRNA metabolic process;9.67547927597953e-08!GO:0009060;aerobic respiration;9.79819121074961e-08!GO:0015630;microtubule cytoskeleton;1.09444495587289e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.47389773467586e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.65980825433303e-07!GO:0007005;mitochondrion organization and biogenesis;1.69682967371208e-07!GO:0008565;protein transporter activity;2.01802803539413e-07!GO:0046930;pore complex;2.1413097531285e-07!GO:0006461;protein complex assembly;2.1413097531285e-07!GO:0050794;regulation of cellular process;2.14762961397866e-07!GO:0008639;small protein conjugating enzyme activity;2.20519900829708e-07!GO:0051329;interphase of mitotic cell cycle;2.20519900829708e-07!GO:0005667;transcription factor complex;2.55176098231951e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.09469704851265e-07!GO:0009141;nucleoside triphosphate metabolic process;3.36467876551261e-07!GO:0016607;nuclear speck;3.43368694553379e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.39420789879026e-07!GO:0016779;nucleotidyltransferase activity;4.39982567926898e-07!GO:0004842;ubiquitin-protein ligase activity;5.19179120335255e-07!GO:0009056;catabolic process;6.11693132816921e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.52128823824103e-07!GO:0009144;purine nucleoside triphosphate metabolic process;6.52128823824103e-07!GO:0004386;helicase activity;6.58112805269175e-07!GO:0045333;cellular respiration;7.47109771049833e-07!GO:0019787;small conjugating protein ligase activity;8.2366264416233e-07!GO:0051325;interphase;9.02431419007942e-07!GO:0009117;nucleotide metabolic process;9.3844669855759e-07!GO:0003697;single-stranded DNA binding;9.73204286937694e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.10064797961329e-06!GO:0050657;nucleic acid transport;1.2063930142733e-06!GO:0051236;establishment of RNA localization;1.2063930142733e-06!GO:0050658;RNA transport;1.2063930142733e-06!GO:0006403;RNA localization;1.21948390148719e-06!GO:0048519;negative regulation of biological process;1.6271522936166e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.8405347872666e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.8405347872666e-06!GO:0005762;mitochondrial large ribosomal subunit;1.88939935934105e-06!GO:0000315;organellar large ribosomal subunit;1.88939935934105e-06!GO:0030120;vesicle coat;1.88939935934105e-06!GO:0030662;coated vesicle membrane;1.88939935934105e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.04393792710072e-06!GO:0003924;GTPase activity;2.15062004939039e-06!GO:0006099;tricarboxylic acid cycle;2.15062004939039e-06!GO:0046356;acetyl-CoA catabolic process;2.15062004939039e-06!GO:0003713;transcription coactivator activity;2.38837967194473e-06!GO:0016563;transcription activator activity;2.46769468417784e-06!GO:0015986;ATP synthesis coupled proton transport;2.48688450398764e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.48688450398764e-06!GO:0042981;regulation of apoptosis;2.58597276930688e-06!GO:0016853;isomerase activity;2.6048971961911e-06!GO:0006091;generation of precursor metabolites and energy;2.83099305091426e-06!GO:0003899;DNA-directed RNA polymerase activity;2.88716843811201e-06!GO:0009108;coenzyme biosynthetic process;2.92178243847455e-06!GO:0016881;acid-amino acid ligase activity;2.95416223372873e-06!GO:0005788;endoplasmic reticulum lumen;2.98296496563206e-06!GO:0043067;regulation of programmed cell death;3.19997869321135e-06!GO:0008026;ATP-dependent helicase activity;3.33329014655847e-06!GO:0006084;acetyl-CoA metabolic process;3.69051453674265e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.76718854126531e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.76718854126531e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.78531525576231e-06!GO:0046034;ATP metabolic process;4.14138939652901e-06!GO:0045259;proton-transporting ATP synthase complex;4.98353771430955e-06!GO:0048475;coated membrane;4.98770338068779e-06!GO:0030117;membrane coat;4.98770338068779e-06!GO:0051187;cofactor catabolic process;5.8792177413779e-06!GO:0031324;negative regulation of cellular metabolic process;6.813990020415e-06!GO:0008654;phospholipid biosynthetic process;7.08608300021792e-06!GO:0019829;cation-transporting ATPase activity;7.57434394565131e-06!GO:0009109;coenzyme catabolic process;8.79586653426814e-06!GO:0044431;Golgi apparatus part;1.09710301832076e-05!GO:0000786;nucleosome;1.09710301832076e-05!GO:0045786;negative regulation of progression through cell cycle;1.09710301832076e-05!GO:0051246;regulation of protein metabolic process;1.13174086584539e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.22620470146455e-05!GO:0000245;spliceosome assembly;1.34161106851304e-05!GO:0051170;nuclear import;1.52244500957777e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.65905627279966e-05!GO:0005813;centrosome;1.93926319643581e-05!GO:0016787;hydrolase activity;2.01054119474047e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.129619982504e-05!GO:0032446;protein modification by small protein conjugation;2.20848099497106e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.25540728803812e-05!GO:0005768;endosome;2.26703930506016e-05!GO:0045454;cell redox homeostasis;2.30925849228618e-05!GO:0006754;ATP biosynthetic process;2.31287014641911e-05!GO:0006753;nucleoside phosphate metabolic process;2.31287014641911e-05!GO:0006606;protein import into nucleus;2.40242636028676e-05!GO:0043566;structure-specific DNA binding;2.47764893163921e-05!GO:0016564;transcription repressor activity;2.63838777960227e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.69701413556148e-05!GO:0016859;cis-trans isomerase activity;2.82631190542286e-05!GO:0016567;protein ubiquitination;2.83527351090439e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.03438747627576e-05!GO:0006261;DNA-dependent DNA replication;3.07991442993839e-05!GO:0006793;phosphorus metabolic process;3.45980540529754e-05!GO:0006796;phosphate metabolic process;3.45980540529754e-05!GO:0051028;mRNA transport;3.50878987022109e-05!GO:0006916;anti-apoptosis;3.59946042711944e-05!GO:0005815;microtubule organizing center;3.60923003702736e-05!GO:0005819;spindle;3.76880871520055e-05!GO:0031252;leading edge;3.886702056087e-05!GO:0044440;endosomal part;4.68547635794248e-05!GO:0010008;endosome membrane;4.68547635794248e-05!GO:0043069;negative regulation of programmed cell death;5.24250511579229e-05!GO:0006752;group transfer coenzyme metabolic process;6.05725171781289e-05!GO:0050789;regulation of biological process;6.16699229128662e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.58434999682163e-05!GO:0003714;transcription corepressor activity;6.63695488209773e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.67847403659285e-05!GO:0005905;coated pit;6.83213599138647e-05!GO:0043066;negative regulation of apoptosis;6.85037527817753e-05!GO:0000314;organellar small ribosomal subunit;7.91160686333466e-05!GO:0005763;mitochondrial small ribosomal subunit;7.91160686333466e-05!GO:0009892;negative regulation of metabolic process;8.02681027828321e-05!GO:0051427;hormone receptor binding;8.89884290359659e-05!GO:0030867;rough endoplasmic reticulum membrane;9.16934560171766e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000100005745654312!GO:0008610;lipid biosynthetic process;0.000111592453390976!GO:0016023;cytoplasmic membrane-bound vesicle;0.000117383764240413!GO:0019867;outer membrane;0.000119123617748622!GO:0043623;cellular protein complex assembly;0.000125295832041817!GO:0016481;negative regulation of transcription;0.000126109510967325!GO:0000775;chromosome, pericentric region;0.000132120543017579!GO:0005657;replication fork;0.00013279763400027!GO:0044262;cellular carbohydrate metabolic process;0.000134128902949991!GO:0000151;ubiquitin ligase complex;0.00015257085157489!GO:0031968;organelle outer membrane;0.000157204332222269!GO:0015980;energy derivation by oxidation of organic compounds;0.000157204332222269!GO:0019899;enzyme binding;0.000157204332222269!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000165313388708166!GO:0000139;Golgi membrane;0.000167049649677215!GO:0008361;regulation of cell size;0.000168867906319484!GO:0035257;nuclear hormone receptor binding;0.000172883980131004!GO:0031988;membrane-bound vesicle;0.000177776632798267!GO:0016049;cell growth;0.00019501726610769!GO:0004298;threonine endopeptidase activity;0.000201756005413326!GO:0005770;late endosome;0.000205727287003848!GO:0005773;vacuole;0.000206328414385366!GO:0005791;rough endoplasmic reticulum;0.00021542278480342!GO:0016310;phosphorylation;0.000215588002283796!GO:0008094;DNA-dependent ATPase activity;0.000219721910187819!GO:0016126;sterol biosynthetic process;0.000219896365767912!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000222512641330232!GO:0046474;glycerophospholipid biosynthetic process;0.000232019071128057!GO:0006626;protein targeting to mitochondrion;0.00023305670418645!GO:0030036;actin cytoskeleton organization and biogenesis;0.000240120514334088!GO:0005798;Golgi-associated vesicle;0.000250621029387733!GO:0033116;ER-Golgi intermediate compartment membrane;0.00029800025156163!GO:0007051;spindle organization and biogenesis;0.000329993996286794!GO:0000075;cell cycle checkpoint;0.000349421377375465!GO:0043681;protein import into mitochondrion;0.000350346374522955!GO:0007010;cytoskeleton organization and biogenesis;0.000367497179723397!GO:0005741;mitochondrial outer membrane;0.000411132335030714!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000441427338327408!GO:0003724;RNA helicase activity;0.000462996479261156!GO:0006613;cotranslational protein targeting to membrane;0.000466135706748688!GO:0006839;mitochondrial transport;0.000476072979576912!GO:0005525;GTP binding;0.000520570473508439!GO:0008250;oligosaccharyl transferase complex;0.000539354053374296!GO:0008033;tRNA processing;0.000540518156911863!GO:0006082;organic acid metabolic process;0.000564284336659355!GO:0043021;ribonucleoprotein binding;0.000603576157614097!GO:0019752;carboxylic acid metabolic process;0.000657886254923634!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00068495094009119!GO:0000323;lytic vacuole;0.000724875872475531!GO:0005764;lysosome;0.000724875872475531!GO:0005048;signal sequence binding;0.000730859370663379!GO:0009165;nucleotide biosynthetic process;0.000758908695003114!GO:0030176;integral to endoplasmic reticulum membrane;0.000771704445011526!GO:0032508;DNA duplex unwinding;0.000784060474873509!GO:0032392;DNA geometric change;0.000784060474873509!GO:0003684;damaged DNA binding;0.00079576653234853!GO:0019843;rRNA binding;0.000906094260139132!GO:0031410;cytoplasmic vesicle;0.000937709489831548!GO:0051920;peroxiredoxin activity;0.000948851299690079!GO:0001558;regulation of cell growth;0.000984804047448352!GO:0051789;response to protein stimulus;0.000991891398655196!GO:0006986;response to unfolded protein;0.000991891398655196!GO:0019222;regulation of metabolic process;0.0010286540727849!GO:0003682;chromatin binding;0.00107351904518286!GO:0031982;vesicle;0.00107563345777079!GO:0030880;RNA polymerase complex;0.00116761007425172!GO:0005769;early endosome;0.0011854969843788!GO:0048522;positive regulation of cellular process;0.0011854969843788!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00119724549363774!GO:0043488;regulation of mRNA stability;0.00120025646876529!GO:0043487;regulation of RNA stability;0.00120025646876529!GO:0046467;membrane lipid biosynthetic process;0.00120885542569813!GO:0051168;nuclear export;0.00127808338758993!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00128628071253425!GO:0007006;mitochondrial membrane organization and biogenesis;0.00130953111903651!GO:0006695;cholesterol biosynthetic process;0.00131192958873069!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00131427576735606!GO:0030133;transport vesicle;0.0013245271032744!GO:0051252;regulation of RNA metabolic process;0.00132773699276602!GO:0018196;peptidyl-asparagine modification;0.00135776289558149!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00135776289558149!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00137259968800868!GO:0045941;positive regulation of transcription;0.00139830515281485!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0014217476712364!GO:0006268;DNA unwinding during replication;0.00152800759425665!GO:0006402;mRNA catabolic process;0.0015900069862973!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00164800417260201!GO:0006414;translational elongation;0.00166914598793098!GO:0005874;microtubule;0.00167014928508921!GO:0044452;nucleolar part;0.00170173821718517!GO:0043284;biopolymer biosynthetic process;0.00174787825007834!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00181526185027749!GO:0030132;clathrin coat of coated pit;0.00185026744350582!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00188437262712161!GO:0006383;transcription from RNA polymerase III promoter;0.001900354164492!GO:0030029;actin filament-based process;0.0019619157059005!GO:0005885;Arp2/3 protein complex;0.0019735528252672!GO:0006778;porphyrin metabolic process;0.00197805426600808!GO:0033013;tetrapyrrole metabolic process;0.00197805426600808!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0020281585425475!GO:0005684;U2-dependent spliceosome;0.002090942124464!GO:0065009;regulation of a molecular function;0.00216749036609472!GO:0045893;positive regulation of transcription, DNA-dependent;0.00230209625419665!GO:0045892;negative regulation of transcription, DNA-dependent;0.0023505191931996!GO:0046489;phosphoinositide biosynthetic process;0.00236840025784126!GO:0008632;apoptotic program;0.00237967509236045!GO:0003678;DNA helicase activity;0.00238809232980958!GO:0006979;response to oxidative stress;0.00257431193452984!GO:0042802;identical protein binding;0.00260235141997964!GO:0006401;RNA catabolic process;0.00266575803992815!GO:0004576;oligosaccharyl transferase activity;0.00271278085146162!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00273007869675275!GO:0000428;DNA-directed RNA polymerase complex;0.00273007869675275!GO:0030027;lamellipodium;0.00273007869675275!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00286782878851714!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00286782878851714!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00286782878851714!GO:0007088;regulation of mitosis;0.00295662415848902!GO:0000082;G1/S transition of mitotic cell cycle;0.00313147583529209!GO:0016741;transferase activity, transferring one-carbon groups;0.00329905901857115!GO:0008186;RNA-dependent ATPase activity;0.00333432066632316!GO:0006779;porphyrin biosynthetic process;0.00333432066632316!GO:0033014;tetrapyrrole biosynthetic process;0.00333432066632316!GO:0006520;amino acid metabolic process;0.00334461793516518!GO:0032561;guanyl ribonucleotide binding;0.00339713690869541!GO:0019001;guanyl nucleotide binding;0.00339713690869541!GO:0006595;polyamine metabolic process;0.00378690815582142!GO:0006740;NADPH regeneration;0.00397830789053148!GO:0006098;pentose-phosphate shunt;0.00397830789053148!GO:0008168;methyltransferase activity;0.00407036992685862!GO:0050662;coenzyme binding;0.00419113036995236!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00421228326728025!GO:0015002;heme-copper terminal oxidase activity;0.00421228326728025!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00421228326728025!GO:0004129;cytochrome-c oxidase activity;0.00421228326728025!GO:0031072;heat shock protein binding;0.00434841331847805!GO:0017166;vinculin binding;0.00435467899071239!GO:0030118;clathrin coat;0.00465948945425243!GO:0016044;membrane organization and biogenesis;0.00467716496723069!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00486791994818001!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00486791994818001!GO:0040029;regulation of gene expression, epigenetic;0.00493112870055123!GO:0046483;heterocycle metabolic process;0.00499964409649322!GO:0000059;protein import into nucleus, docking;0.00502236606143725!GO:0030658;transport vesicle membrane;0.00503599449623657!GO:0007040;lysosome organization and biogenesis;0.00550247203207639!GO:0006289;nucleotide-excision repair;0.00589343038563694!GO:0008652;amino acid biosynthetic process;0.00590716180064938!GO:0051540;metal cluster binding;0.00614595608400362!GO:0051536;iron-sulfur cluster binding;0.00614595608400362!GO:0006220;pyrimidine nucleotide metabolic process;0.00634827162664333!GO:0042168;heme metabolic process;0.00634827162664333!GO:0006612;protein targeting to membrane;0.00634827162664333!GO:0005774;vacuolar membrane;0.00636857095781755!GO:0003729;mRNA binding;0.00650224596684391!GO:0051087;chaperone binding;0.00661016526053204!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00667272671813066!GO:0000096;sulfur amino acid metabolic process;0.00731535925207901!GO:0007346;regulation of progression through mitotic cell cycle;0.00737058628299628!GO:0051348;negative regulation of transferase activity;0.00753012367873167!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00778917997793738!GO:0006352;transcription initiation;0.00791138374348298!GO:0004004;ATP-dependent RNA helicase activity;0.00791138374348298!GO:0030119;AP-type membrane coat adaptor complex;0.00791330722837071!GO:0006284;base-excision repair;0.00791748291088281!GO:0000084;S phase of mitotic cell cycle;0.00795081416640054!GO:0019206;nucleoside kinase activity;0.00800318454236503!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00803580791908998!GO:0033673;negative regulation of kinase activity;0.00808916191064562!GO:0006469;negative regulation of protein kinase activity;0.00808916191064562!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00812239784251631!GO:0007264;small GTPase mediated signal transduction;0.00818302925138043!GO:0006007;glucose catabolic process;0.00834395179360449!GO:0007033;vacuole organization and biogenesis;0.00834395179360449!GO:0016272;prefoldin complex;0.00853808386726136!GO:0007050;cell cycle arrest;0.00863441072469998!GO:0048471;perinuclear region of cytoplasm;0.00897398658216669!GO:0051539;4 iron, 4 sulfur cluster binding;0.00899482383744913!GO:0007243;protein kinase cascade;0.00905733996095799!GO:0008047;enzyme activator activity;0.00907140135734516!GO:0006338;chromatin remodeling;0.00908824019420827!GO:0030145;manganese ion binding;0.00945931427102212!GO:0006118;electron transport;0.00961327321512127!GO:0016363;nuclear matrix;0.00965151262877861!GO:0000049;tRNA binding;0.00969152215131151!GO:0030663;COPI coated vesicle membrane;0.00978512108532217!GO:0030126;COPI vesicle coat;0.00978512108532217!GO:0035258;steroid hormone receptor binding;0.0100377718552663!GO:0051287;NAD binding;0.0100476244754001!GO:0003711;transcription elongation regulator activity;0.0101061838119876!GO:0006405;RNA export from nucleus;0.0101427509641729!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0101648838162374!GO:0015631;tubulin binding;0.0105236810789945!GO:0065007;biological regulation;0.0105663970340935!GO:0006783;heme biosynthetic process;0.0105982305770383!GO:0031902;late endosome membrane;0.010673504512728!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0109092569702347!GO:0015399;primary active transmembrane transporter activity;0.0109092569702347!GO:0030137;COPI-coated vesicle;0.0109718171819912!GO:0009303;rRNA transcription;0.0111074523544835!GO:0005096;GTPase activator activity;0.0112989972695402!GO:0030131;clathrin adaptor complex;0.0115874049725004!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0116255643189497!GO:0030521;androgen receptor signaling pathway;0.0120387356290531!GO:0008092;cytoskeletal protein binding;0.0121706969063413!GO:0040008;regulation of growth;0.0121706969063413!GO:0030134;ER to Golgi transport vesicle;0.0123795975339808!GO:0006950;response to stress;0.0124334271169246!GO:0048037;cofactor binding;0.012595714560906!GO:0030660;Golgi-associated vesicle membrane;0.0126439770456533!GO:0000228;nuclear chromosome;0.0126822129338072!GO:0008139;nuclear localization sequence binding;0.0128577169900357!GO:0005996;monosaccharide metabolic process;0.0137404555760093!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0140590840664696!GO:0051101;regulation of DNA binding;0.0140684105936267!GO:0019318;hexose metabolic process;0.0141142715126274!GO:0005765;lysosomal membrane;0.0146215677530015!GO:0044437;vacuolar part;0.0146237814428864!GO:0006739;NADP metabolic process;0.0146798181326064!GO:0042393;histone binding;0.0146798181326064!GO:0048487;beta-tubulin binding;0.0147649876864932!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.014817310822226!GO:0030041;actin filament polymerization;0.0148483052764754!GO:0004177;aminopeptidase activity;0.0150704510555301!GO:0016860;intramolecular oxidoreductase activity;0.015460814766049!GO:0004674;protein serine/threonine kinase activity;0.015496117555211!GO:0004527;exonuclease activity;0.0159668319997009!GO:0005869;dynactin complex;0.0162887271366455!GO:0006302;double-strand break repair;0.0163400369156784!GO:0030125;clathrin vesicle coat;0.0165123721791263!GO:0030665;clathrin coated vesicle membrane;0.0165123721791263!GO:0031272;regulation of pseudopodium formation;0.0165123721791263!GO:0031269;pseudopodium formation;0.0165123721791263!GO:0031344;regulation of cell projection organization and biogenesis;0.0165123721791263!GO:0031268;pseudopodium organization and biogenesis;0.0165123721791263!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0165123721791263!GO:0031274;positive regulation of pseudopodium formation;0.0165123721791263!GO:0015992;proton transport;0.0165123721791263!GO:0008629;induction of apoptosis by intracellular signals;0.016545410192422!GO:0000792;heterochromatin;0.0169065047349592!GO:0000209;protein polyubiquitination;0.0169825205437122!GO:0007093;mitotic cell cycle checkpoint;0.0169849422129479!GO:0004518;nuclease activity;0.0179448619906176!GO:0005637;nuclear inner membrane;0.0179448619906176!GO:0006818;hydrogen transport;0.017978082527399!GO:0051320;S phase;0.0182594305030695!GO:0016125;sterol metabolic process;0.0184842670235967!GO:0001726;ruffle;0.0189026205017988!GO:0051098;regulation of binding;0.0191989788511608!GO:0006509;membrane protein ectodomain proteolysis;0.0191989788511608!GO:0033619;membrane protein proteolysis;0.0191989788511608!GO:0005100;Rho GTPase activator activity;0.0192296483636404!GO:0031124;mRNA 3'-end processing;0.0194159608258067!GO:0048468;cell development;0.0194615211495247!GO:0022415;viral reproductive process;0.0197062798941784!GO:0008286;insulin receptor signaling pathway;0.0201395805383024!GO:0000123;histone acetyltransferase complex;0.0207455307992165!GO:0016301;kinase activity;0.0208523550782532!GO:0046426;negative regulation of JAK-STAT cascade;0.0208643947514566!GO:0006650;glycerophospholipid metabolic process;0.021060783681845!GO:0016585;chromatin remodeling complex;0.0211663199935119!GO:0031529;ruffle organization and biogenesis;0.0211663199935119!GO:0045792;negative regulation of cell size;0.0211663199935119!GO:0048500;signal recognition particle;0.0211935280085316!GO:0006506;GPI anchor biosynthetic process;0.0219547293678835!GO:0009112;nucleobase metabolic process;0.0220179318179076!GO:0016407;acetyltransferase activity;0.022177165735432!GO:0000910;cytokinesis;0.0228028567461048!GO:0043414;biopolymer methylation;0.0231521959276966!GO:0048518;positive regulation of biological process;0.0234246468717313!GO:0030127;COPII vesicle coat;0.0234246468717313!GO:0012507;ER to Golgi transport vesicle membrane;0.0234246468717313!GO:0006790;sulfur metabolic process;0.0234246468717313!GO:0006275;regulation of DNA replication;0.0240917851946469!GO:0030308;negative regulation of cell growth;0.0241633958374031!GO:0043596;nuclear replication fork;0.024393460063376!GO:0006066;alcohol metabolic process;0.0245183548262601!GO:0008538;proteasome activator activity;0.0250954438054303!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0252250841786052!GO:0006458;'de novo' protein folding;0.0255936760010379!GO:0051084;'de novo' posttranslational protein folding;0.0255936760010379!GO:0005758;mitochondrial intermembrane space;0.0256013703652229!GO:0008312;7S RNA binding;0.0258156066791008!GO:0015036;disulfide oxidoreductase activity;0.0260276001730491!GO:0005862;muscle thin filament tropomyosin;0.0260588963492113!GO:0030508;thiol-disulfide exchange intermediate activity;0.0261360989649897!GO:0007021;tubulin folding;0.0265263652143463!GO:0008637;apoptotic mitochondrial changes;0.0267104215881596!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0268927128835308!GO:0006310;DNA recombination;0.0270341295351306!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0270782194145471!GO:0005832;chaperonin-containing T-complex;0.0270995393958576!GO:0043189;H4/H2A histone acetyltransferase complex;0.0271190656701385!GO:0031323;regulation of cellular metabolic process;0.0277166991820892!GO:0007052;mitotic spindle organization and biogenesis;0.0279998084895246!GO:0008154;actin polymerization and/or depolymerization;0.0280382885920431!GO:0009116;nucleoside metabolic process;0.0282409622230221!GO:0022890;inorganic cation transmembrane transporter activity;0.0284665459711204!GO:0033559;unsaturated fatty acid metabolic process;0.0286114803147821!GO:0006636;unsaturated fatty acid biosynthetic process;0.0286114803147821!GO:0006497;protein amino acid lipidation;0.0286114803147821!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0286171622628339!GO:0050790;regulation of catalytic activity;0.0287781849858447!GO:0006611;protein export from nucleus;0.0290959083635102!GO:0035035;histone acetyltransferase binding;0.0290959083635102!GO:0006733;oxidoreduction coenzyme metabolic process;0.029181751445881!GO:0006807;nitrogen compound metabolic process;0.0291998111681992!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0292396948367381!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0292396948367381!GO:0051052;regulation of DNA metabolic process;0.0293120116315506!GO:0030659;cytoplasmic vesicle membrane;0.0298159320588501!GO:0042770;DNA damage response, signal transduction;0.0300799733020386!GO:0030433;ER-associated protein catabolic process;0.0303210064088192!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0303210064088192!GO:0031543;peptidyl-proline dioxygenase activity;0.030507736448114!GO:0000339;RNA cap binding;0.0315238924864933!GO:0006350;transcription;0.0317497120377793!GO:0003746;translation elongation factor activity;0.031910991307525!GO:0007265;Ras protein signal transduction;0.0322307344545586!GO:0000922;spindle pole;0.0323617704797093!GO:0004003;ATP-dependent DNA helicase activity;0.0325960050671226!GO:0019798;procollagen-proline dioxygenase activity;0.0326170446906313!GO:0003756;protein disulfide isomerase activity;0.0332387587504538!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0332387587504538!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0336587044504221!GO:0016584;nucleosome positioning;0.034565998824443!GO:0022408;negative regulation of cell-cell adhesion;0.035424289318439!GO:0006505;GPI anchor metabolic process;0.0355621398685919!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0355621398685919!GO:0043022;ribosome binding;0.0355621398685919!GO:0044454;nuclear chromosome part;0.0372377552722439!GO:0006891;intra-Golgi vesicle-mediated transport;0.0376408864006203!GO:0006519;amino acid and derivative metabolic process;0.0379680578274259!GO:0009451;RNA modification;0.0380991859778797!GO:0035267;NuA4 histone acetyltransferase complex;0.0382431299878517!GO:0008213;protein amino acid alkylation;0.0394150604016856!GO:0006479;protein amino acid methylation;0.0394150604016856!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0394150604016856!GO:0050178;phenylpyruvate tautomerase activity;0.0396172223182317!GO:0003887;DNA-directed DNA polymerase activity;0.0399470708945367!GO:0009262;deoxyribonucleotide metabolic process;0.0399984275273278!GO:0043407;negative regulation of MAP kinase activity;0.0409364930066441!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0409921995326797!GO:0006730;one-carbon compound metabolic process;0.0409921995326797!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0412427117358804!GO:0045047;protein targeting to ER;0.0412427117358804!GO:0005652;nuclear lamina;0.0415886525325008!GO:0030911;TPR domain binding;0.0421306440201926!GO:0001953;negative regulation of cell-matrix adhesion;0.0426495469891932!GO:0000781;chromosome, telomeric region;0.0428231710244948!GO:0000776;kinetochore;0.0443599920758335!GO:0005092;GDP-dissociation inhibitor activity;0.0445346683840916!GO:0031970;organelle envelope lumen;0.0447040434444366!GO:0031371;ubiquitin conjugating enzyme complex;0.0448860777924914!GO:0031418;L-ascorbic acid binding;0.0451248503419342!GO:0007017;microtubule-based process;0.045252630968044!GO:0016791;phosphoric monoester hydrolase activity;0.04575381449725!GO:0006897;endocytosis;0.04575381449725!GO:0010324;membrane invagination;0.04575381449725!GO:0006984;ER-nuclear signaling pathway;0.0459472823693943!GO:0043086;negative regulation of catalytic activity;0.0461021395913135!GO:0030833;regulation of actin filament polymerization;0.0461361426795591!GO:0032259;methylation;0.0463750745577058!GO:0031901;early endosome membrane;0.0468967627553255!GO:0000790;nuclear chromatin;0.0469144112061668!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0470352886194767!GO:0008180;signalosome;0.0470613257033471!GO:0051128;regulation of cellular component organization and biogenesis;0.0475251983616023!GO:0051085;chaperone cofactor-dependent protein folding;0.047728180648857!GO:0016417;S-acyltransferase activity;0.0478425297134351!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0480963401658805!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0486841557219196!GO:0006541;glutamine metabolic process;0.0490661838220126!GO:0006354;RNA elongation;0.0491244913028454!GO:0009308;amine metabolic process;0.0491763980017911
|sample_id=11532
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=eye
|top_motifs=GTF2A1,2:1.38882320243;ZNF238:1.34527405697;LHX3,4:1.2504057039;TAL1_TCF{3,4,12}:1.21151688207;GZF1:1.15075632372;EBF1:1.1391167126;ZNF423:1.13283001149;XCPE1{core}:1.06852695814;PBX1:1.02033691633;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.01337695445;TFDP1:0.953744300978;HOX{A5,B5}:0.943501109434;NFY{A,B,C}:0.92971338831;RXR{A,B,G}:0.874127566242;GFI1:0.86701072899;LEF1_TCF7_TCF7L1,2:0.817267725295;CRX:0.803738207583;HES1:0.764047101825;HAND1,2:0.751404852857;NKX2-2,8:0.737306194585;HOX{A6,A7,B6,B7}:0.710685592513;E2F1..5:0.700413341995;bHLH_family:0.676734268355;TLX1..3_NFIC{dimer}:0.653510282245;ZIC1..3:0.643940035355;TFCP2:0.632306926383;TOPORS:0.600636091925;AR:0.588207436262;POU5F1:0.573167694585;TFAP4:0.552676691986;POU2F1..3:0.545156481729;GFI1B:0.5338848676;NR3C1:0.524044307141;NR5A1,2:0.514941693394;XBP1:0.51464529951;ZNF148:0.501433223509;SP1:0.487982621743;TEAD1:0.457297140684;ESR1:0.446358289984;RXRA_VDR{dimer}:0.436695761366;NFE2L2:0.401215543695;GTF2I:0.398049321437;SOX{8,9,10}:0.392642061495;ZNF143:0.392351624643;POU1F1:0.374085313082;PAX8:0.358895839282;MYBL2:0.357505513389;TFAP2B:0.328878306407;MYB:0.324181957094;PATZ1:0.321570881754;NR1H4:0.317521490619;MTF1:0.316501805807;HIC1:0.306136663414;RREB1:0.30371614737;TBP:0.288266544141;PAX1,9:0.287336028513;STAT5{A,B}:0.272776767617;PAX5:0.270790596015;SOX5:0.250095217119;KLF4:0.243333937847;NANOG:0.24211663846;ADNP_IRX_SIX_ZHX:0.241619480646;PRRX1,2:0.227661210199;GLI1..3:0.196195612443;IKZF1:0.181776772405;HNF4A_NR2F1,2:0.176961334431;TP53:0.171599240247;BACH2:0.164006349651;NKX2-3_NKX2-5:0.15288618079;SOX17:0.137962411734;FOX{I1,J2}:0.126243327483;NFE2L1:0.123495573321;NKX3-1:0.121625296515;TBX4,5:0.117966508995;HNF1A:0.108164546315;NFE2:0.106110433849;ZBTB6:0.0985080495856;T:0.0900876264156;SPZ1:0.0822875699474;CEBPA,B_DDIT3:0.0815814954401;PDX1:0.0752229018601;TFAP2{A,C}:0.0681317453945;FOS_FOS{B,L1}_JUN{B,D}:0.0677925659128;HLF:0.0606484230748;FOSL2:0.047260259284;PAX3,7:0.0372179326302;FOXA2:0.0266397023883;SRF:0.0258957117944;EN1,2:0.0192778615459;MZF1:0.00977835770647;ESRRA:0.00460330484418;ONECUT1,2:0.000357656996504;NKX6-1,2:-0.00855920006178;GATA6:-0.0086862505275;EP300:-0.0114499874664;TEF:-0.0252511208784;YY1:-0.0329802507281;ALX4:-0.0660641220169;NRF1:-0.0799512000249;RFX1:-0.0926256554765;EGR1..3:-0.093211413431;FOXQ1:-0.0942206656422;BREu{core}:-0.114619346824;MAZ:-0.117562495035;NFATC1..3:-0.120526622033;REST:-0.120772727695;CUX2:-0.122243007854;NR6A1:-0.125826734188;MEF2{A,B,C,D}:-0.129131321601;FOXD3:-0.131353276721;MED-1{core}:-0.155915655043;OCT4_SOX2{dimer}:-0.160102232352;RUNX1..3:-0.164142152312;SOX2:-0.196772538236;MYOD1:-0.200766452027;STAT2,4,6:-0.20964142673;HOXA9_MEIS1:-0.214346261674;FOX{F1,F2,J1}:-0.226267162207;CDC5L:-0.23338539961;HBP1_HMGB_SSRP1_UBTF:-0.255642413016;LMO2:-0.256120397937;ELK1,4_GABP{A,B1}:-0.261062009592;NHLH1,2:-0.270687383705;RORA:-0.27997265421;JUN:-0.280334389506;AIRE:-0.290743272162;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.312216704199;GCM1,2:-0.315914279025;NANOG{mouse}:-0.364885897358;PITX1..3:-0.366907266867;ETS1,2:-0.375586410579;UFEwm:-0.382691601676;VSX1,2:-0.383204581557;PAX6:-0.389311400326;AHR_ARNT_ARNT2:-0.403095423281;POU3F1..4:-0.403123256142;NFKB1_REL_RELA:-0.407910897629;HSF1,2:-0.411058812546;ARID5B:-0.411424420816;ELF1,2,4:-0.427675258693;PAX4:-0.431335436989;SPIB:-0.451909202072;ZFP161:-0.458017084304;STAT1,3:-0.458857224507;ZNF384:-0.463782609179;ATF6:-0.479871558237;HMX1:-0.487640567022;SPI1:-0.519905470525;PRDM1:-0.526911766464;SNAI1..3:-0.535726711605;DBP:-0.539174469371;NFIL3:-0.53976022788;EVI1:-0.54384762508;MYFfamily:-0.548398241925;ZEB1:-0.579528832313;TGIF1:-0.596739816231;NFIX:-0.61872412671;FOXL1:-0.625239804138;CREB1:-0.654437090142;PPARG:-0.659687240716;FOXM1:-0.68254546969;HIF1A:-0.684170571934;ATF2:-0.685211551701;MTE{core}:-0.685513807514;FOXO1,3,4:-0.695770952828;POU6F1:-0.699123789535;ATF5_CREB3:-0.732707059088;GATA4:-0.73576636756;SMAD1..7,9:-0.737970488028;HOX{A4,D4}:-0.752303278338;DMAP1_NCOR{1,2}_SMARC:-0.760288442003;FOXP3:-0.788343060576;TLX2:-0.840395757565;PAX2:-0.845241049393;CDX1,2,4:-0.853337438027;IRF7:-0.856323388337;NKX3-2:-0.861401555776;IRF1,2:-0.867633061788;FOX{D1,D2}:-0.894508276236;MAFB:-0.894795615173;RFX2..5_RFXANK_RFXAP:-0.911660741525;BPTF:-0.927525751307;FOXP1:-0.957642636018;NKX2-1,4:-1.0010390671;ATF4:-1.00499458535;RBPJ:-1.29337568869;IKZF2:-1.36481733351;HMGA1,2:-1.38870228481;ZBTB16:-1.48057055005;SREBF1,2:-1.53566522964;ALX1:-1.54616013274;FOXN1:-1.64977651022
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11532-120A2;search_select_hide=table117:FF:11532-120A2
}}
}}

Latest revision as of 18:07, 4 June 2020

Name:Trabecular Meshwork Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11340
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stageNA
sexNA
ageNA
cell typetrabecular meshwork cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC6595
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005165
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11340 CAGE DRX008519 DRR009391
Accession ID Hg19

Library idBAMCTSS
CNhs11340 DRZ000816 DRZ002201
Accession ID Hg38

Library idBAMCTSS
CNhs11340 DRZ012166 DRZ013551
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005165
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.GTCCGC sRNA-Seq DRX037123 DRR041489
Accession ID Hg19

Library idBAMCTSS
SRhi10008.GTCCGC DRZ007131


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.143
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.161
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.091
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.383
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.25
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.14
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.23
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0767
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.12
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.667
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.726
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.14
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.245
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11340

Jaspar motifP-value
MA0002.20.906
MA0003.10.402
MA0004.10.146
MA0006.10.377
MA0007.10.0134
MA0009.10.379
MA0014.10.792
MA0017.10.571
MA0018.20.00972
MA0019.10.89
MA0024.15.87271e-4
MA0025.10.192
MA0027.10.236
MA0028.10.84
MA0029.10.498
MA0030.10.85
MA0031.10.083
MA0035.20.0978
MA0038.12.15483e-6
MA0039.20.109
MA0040.10.517
MA0041.10.336
MA0042.10.691
MA0043.10.00974
MA0046.10.0016
MA0047.20.6
MA0048.10.132
MA0050.12.15522e-8
MA0051.11.34126e-5
MA0052.10.077
MA0055.18.51397e-5
MA0057.10.364
MA0058.10.412
MA0059.10.265
MA0060.13.99466e-15
MA0061.10.211
MA0062.20.0974
MA0065.20.483
MA0066.10.651
MA0067.10.00778
MA0068.10.779
MA0069.10.633
MA0070.10.00475
MA0071.10.14
MA0072.10.927
MA0073.10.696
MA0074.10.436
MA0076.10.459
MA0077.10.0509
MA0078.10.792
MA0079.20.919
MA0080.21.52236e-4
MA0081.10.103
MA0083.10.17
MA0084.10.279
MA0087.10.469
MA0088.10.107
MA0090.10.212
MA0091.10.0366
MA0092.10.417
MA0093.10.237
MA0099.20.00491
MA0100.10.778
MA0101.10.356
MA0102.20.0116
MA0103.10.125
MA0104.20.61
MA0105.10.55
MA0106.10.397
MA0107.10.0954
MA0108.25.85928e-5
MA0111.10.312
MA0112.20.321
MA0113.10.0221
MA0114.10.505
MA0115.10.984
MA0116.10.919
MA0117.10.317
MA0119.10.35
MA0122.10.981
MA0124.10.0947
MA0125.10.323
MA0131.10.598
MA0135.10.112
MA0136.10.00398
MA0137.20.0468
MA0138.20.814
MA0139.10.727
MA0140.10.183
MA0141.10.203
MA0142.10.89
MA0143.10.467
MA0144.10.273
MA0145.10.7
MA0146.10.0158
MA0147.10.336
MA0148.10.758
MA0149.10.721
MA0150.10.751
MA0152.10.905
MA0153.10.181
MA0154.10.739
MA0155.10.156
MA0156.10.0394
MA0157.10.164
MA0159.10.399
MA0160.10.135
MA0162.10.24
MA0163.10.529
MA0164.10.621
MA0258.10.753
MA0259.10.682



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11340

Novel motifP-value
10.527
100.239
1000.708
1010.172
1020.637
1030.287
1040.337
1050.0283
1060.838
1070.441
1080.571
1090.105
110.228
1100.097
1110.361
1120.347
1130.643
1140.244
1150.982
1160.361
1170.977
1180.755
1190.508
120.566
1200.48
1210.309
1220.833
1230.0377
1240.642
1250.375
1260.898
1270.86
1280.821
1290.431
130.47
1300.00712
1310.83
1320.206
1330.0216
1340.426
1350.587
1360.825
1370.165
1380.113
1390.0393
140.924
1400.255
1410.357
1420.568
1430.633
1440.551
1450.386
1460.00695
1470.729
1480.125
1490.865
150.513
1500.368
1510.76
1520.297
1530.172
1540.0436
1550.215
1560.388
1570.425
1580.15
1590.969
160.888
1600.0054
1610.753
1620.0376
1630.437
1640.371
1650.0823
1660.79
1670.165
1680.932
1690.233
170.58
180.518
190.28
20.531
200.693
210.798
220.11
230.741
240.158
250.434
260.211
270.564
280.0574
290.565
30.647
300.0434
310.673
320.0207
330.592
340.104
350.34
360.781
370.823
380.542
390.51
40.341
400.0269
410.464
420.735
430.484
440.158
450.266
460.323
470.492
480.12
490.564
50.221
500.0516
510.457
520.688
530.444
540.489
550.657
560.235
570.696
580.0608
590.183
60.309
600.516
610.791
620.107
630.182
640.0603
650.178
660.0211
670.654
680.00512
690.0359
70.948
700.597
710.492
720.15
730.189
740.593
750.848
760.0999
770.178
780.369
790.628
80.0981
800.852
810.93
820.262
830.662
840.499
850.56
860.528
870.403
880.188
890.511
90.177
900.017
910.423
920.23
930.8
940.763
950.48
960.804
970.655
980.44
991.42904e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11340


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002367 (trabecular meshwork cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0002203 (vasculature of eye)
0001768 (uvea)
0001032 (sensory system)
0002049 (vasculature)
0002200 (vasculature of head)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005969 (reticulum trabeculare)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0004535 (cardiovascular system)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
0001009 (circulatory system)
0003956 (aqueous drainage system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000188 (human trabecular meshwork cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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