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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00004803
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|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004803
|accession_numbers=CAGE;DRX008334;DRR009206;DRZ000631;DRZ002016;DRZ011981;DRZ013366
|accession_numbers_RNASeq=sRNA-Seq;DRX037126;DRR041492;DRZ007134
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|microRNAs=
|microRNAs=
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|microRNAs_nn=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11567
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.GTTTCG.11567
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.GTTTCG.11567
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;11567
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11567
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.GTTTCG.11567
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.GTTTCG.11567
|name=Mast cell, donor4
|name=Mast cell, donor4
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|profile_rnaseq=
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
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Line 80: Line 82:
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|sample_category=primary cells
Line 103: Line 106:
|top_motifs=ATF4:3.51391003542;HSF1,2:2.8749243412;CREB1:2.87261322767;GATA6:2.80230020451;NFKB1_REL_RELA:2.64762221336;PAX2:2.53035315253;PPARG:2.44125801094;ATF5_CREB3:2.34759273311;MAFB:2.30942111065;EGR1..3:2.16878395983;RFX1:1.89792244414;JUN:1.82742050057;FOXN1:1.72879367543;SP1:1.68007988508;SREBF1,2:1.675685373;FOX{D1,D2}:1.52848295959;TFAP2{A,C}:1.49710708594;RFX2..5_RFXANK_RFXAP:1.49511031948;STAT1,3:1.48824236692;ATF2:1.47994786931;PATZ1:1.42368274072;EP300:1.4201416542;ESRRA:1.36050186665;RUNX1..3:1.33411947393;TGIF1:1.23518311395;SPI1:1.18773700872;ATF6:1.16184368506;ELF1,2,4:1.15687437643;SPIB:1.15579776405;CDX1,2,4:1.1200343234;ESR1:1.10008348037;FOSL2:1.0774335123;HOXA9_MEIS1:1.07724037196;FOX{F1,F2,J1}:1.07686031646;XBP1:0.941791735297;DMAP1_NCOR{1,2}_SMARC:0.93369591077;BACH2:0.922465913045;RXRA_VDR{dimer}:0.91398966795;FOS_FOS{B,L1}_JUN{B,D}:0.9058539203;BPTF:0.902946817343;HIF1A:0.902184419822;ETS1,2:0.89808042156;ZNF148:0.836720303192;NFE2:0.832702837199;MAZ:0.815714006196;RXR{A,B,G}:0.811141513221;NFE2L1:0.803777020964;MEF2{A,B,C,D}:0.786574129568;TLX2:0.739567402879;VSX1,2:0.662551494085;TFAP4:0.600548501374;NANOG{mouse}:0.595297509812;MYB:0.5896370732;TFCP2:0.568478790957;FOX{I1,J2}:0.550529262404;NFIL3:0.542457011585;ZNF238:0.518851361098;SPZ1:0.517192515639;TBX4,5:0.472371346434;PAX3,7:0.460569122387;SRF:0.448508623891;SMAD1..7,9:0.444222431528;XCPE1{core}:0.442816372336;bHLH_family:0.439524566437;NFATC1..3:0.436999905527;ALX1:0.431541503244;HBP1_HMGB_SSRP1_UBTF:0.423111571869;ZIC1..3:0.411367098544;AR:0.406290211876;ZFP161:0.40544635304;EBF1:0.346145091799;NHLH1,2:0.340114890203;TFAP2B:0.320180246067;HOX{A6,A7,B6,B7}:0.241951470325;IKZF2:0.233889767151;POU2F1..3:0.218375194826;TBP:0.212617458594;FOXP1:0.173086406523;DBP:0.161553138153;PAX1,9:0.159304859808;HIC1:0.150922427491;PBX1:0.126014267322;GLI1..3:0.119548398654;BREu{core}:0.0806058635248;NFY{A,B,C}:0.0668494913468;SOX2:0.0661599284053;CRX:0.0616632201632;TOPORS:0.0602138207115;NFE2L2:0.0601704689908;HES1:0.0587056873355;FOXQ1:0.0354671863268;MTF1:0.0285240828259;FOXO1,3,4:0.00298598491348;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.03810324362;NR6A1:-0.0676983623632;HMX1:-0.0936486804361;ZBTB6:-0.0942755960409;MTE{core}:-0.111361003208;MED-1{core}:-0.118042833227;MYFfamily:-0.12531161958;PAX5:-0.142169940163;EN1,2:-0.149345842301;RREB1:-0.152876173058;ZNF423:-0.174227435563;GTF2I:-0.217046794137;HLF:-0.238321518819;SOX5:-0.246084665373;REST:-0.285355881357;IRF1,2:-0.294078471197;ELK1,4_GABP{A,B1}:-0.306837683976;PAX6:-0.345852847301;TAL1_TCF{3,4,12}:-0.35134556452;AHR_ARNT_ARNT2:-0.409110435675;PITX1..3:-0.412605299991;POU6F1:-0.416332227023;MZF1:-0.424367325156;CUX2:-0.455463150555;TLX1..3_NFIC{dimer}:-0.46531624371;NRF1:-0.489772671559;HOX{A5,B5}:-0.501193658429;NKX3-2:-0.517290513604;STAT2,4,6:-0.542941373805;ZNF143:-0.554581684837;HNF4A_NR2F1,2:-0.557594490781;E2F1..5:-0.56402382023;ZEB1:-0.573390881076;PAX4:-0.578795847045;TEAD1:-0.58819338684;LHX3,4:-0.588272927484;LEF1_TCF7_TCF7L1,2:-0.621556654997;NR5A1,2:-0.622939154618;GZF1:-0.625802489467;RORA:-0.633858882419;TFDP1:-0.635638434099;TP53:-0.679173438387;CEBPA,B_DDIT3:-0.692585652916;SOX{8,9,10}:-0.710501869993;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.733707126582;HNF1A:-0.734451920334;NANOG:-0.736856548857;IKZF1:-0.74081873833;FOXP3:-0.761850397746;RBPJ:-0.767141653918;ZNF384:-0.797213625435;FOXL1:-0.799450435766;PAX8:-0.804292249048;NKX6-1,2:-0.823673945871;FOXM1:-0.829629179375;PRRX1,2:-0.835009974247;STAT5{A,B}:-0.853384323953;NKX3-1:-0.855463163869;SOX17:-0.881656338194;SNAI1..3:-0.889617135834;ARID5B:-0.892884013448;EVI1:-0.913988099895;IRF7:-0.995416194692;HOX{A4,D4}:-1.03515991543;NKX2-1,4:-1.03577973949;MYOD1:-1.04524273313;GTF2A1,2:-1.04699548323;YY1:-1.0637150237;POU5F1:-1.10726734443;PRDM1:-1.14926993583;NR1H4:-1.15312546067;GATA4:-1.1531286011;OCT4_SOX2{dimer}:-1.15894541623;NFIX:-1.22703485802;HAND1,2:-1.23282036246;FOXD3:-1.26970634901;NKX2-3_NKX2-5:-1.29636227342;NKX2-2,8:-1.30221668359;ZBTB16:-1.32139590042;AIRE:-1.34363486076;UFEwm:-1.37367177004;ONECUT1,2:-1.37732623072;T:-1.42565803318;POU1F1:-1.42829576859;GFI1:-1.42960961916;NR3C1:-1.48044659639;FOXA2:-1.7031802629;MYBL2:-1.82138303022;HMGA1,2:-1.82202856056;GCM1,2:-2.00309044036;GFI1B:-2.12487774376;LMO2:-2.13128080299;CDC5L:-2.26714290362;KLF4:-2.27594824482;ALX4:-2.28837086862;POU3F1..4:-2.31170372913;ADNP_IRX_SIX_ZHX:-2.4021787909;PDX1:-2.64555380772;TEF:-2.70595041965
|top_motifs=ATF4:3.51391003542;HSF1,2:2.8749243412;CREB1:2.87261322767;GATA6:2.80230020451;NFKB1_REL_RELA:2.64762221336;PAX2:2.53035315253;PPARG:2.44125801094;ATF5_CREB3:2.34759273311;MAFB:2.30942111065;EGR1..3:2.16878395983;RFX1:1.89792244414;JUN:1.82742050057;FOXN1:1.72879367543;SP1:1.68007988508;SREBF1,2:1.675685373;FOX{D1,D2}:1.52848295959;TFAP2{A,C}:1.49710708594;RFX2..5_RFXANK_RFXAP:1.49511031948;STAT1,3:1.48824236692;ATF2:1.47994786931;PATZ1:1.42368274072;EP300:1.4201416542;ESRRA:1.36050186665;RUNX1..3:1.33411947393;TGIF1:1.23518311395;SPI1:1.18773700872;ATF6:1.16184368506;ELF1,2,4:1.15687437643;SPIB:1.15579776405;CDX1,2,4:1.1200343234;ESR1:1.10008348037;FOSL2:1.0774335123;HOXA9_MEIS1:1.07724037196;FOX{F1,F2,J1}:1.07686031646;XBP1:0.941791735297;DMAP1_NCOR{1,2}_SMARC:0.93369591077;BACH2:0.922465913045;RXRA_VDR{dimer}:0.91398966795;FOS_FOS{B,L1}_JUN{B,D}:0.9058539203;BPTF:0.902946817343;HIF1A:0.902184419822;ETS1,2:0.89808042156;ZNF148:0.836720303192;NFE2:0.832702837199;MAZ:0.815714006196;RXR{A,B,G}:0.811141513221;NFE2L1:0.803777020964;MEF2{A,B,C,D}:0.786574129568;TLX2:0.739567402879;VSX1,2:0.662551494085;TFAP4:0.600548501374;NANOG{mouse}:0.595297509812;MYB:0.5896370732;TFCP2:0.568478790957;FOX{I1,J2}:0.550529262404;NFIL3:0.542457011585;ZNF238:0.518851361098;SPZ1:0.517192515639;TBX4,5:0.472371346434;PAX3,7:0.460569122387;SRF:0.448508623891;SMAD1..7,9:0.444222431528;XCPE1{core}:0.442816372336;bHLH_family:0.439524566437;NFATC1..3:0.436999905527;ALX1:0.431541503244;HBP1_HMGB_SSRP1_UBTF:0.423111571869;ZIC1..3:0.411367098544;AR:0.406290211876;ZFP161:0.40544635304;EBF1:0.346145091799;NHLH1,2:0.340114890203;TFAP2B:0.320180246067;HOX{A6,A7,B6,B7}:0.241951470325;IKZF2:0.233889767151;POU2F1..3:0.218375194826;TBP:0.212617458594;FOXP1:0.173086406523;DBP:0.161553138153;PAX1,9:0.159304859808;HIC1:0.150922427491;PBX1:0.126014267322;GLI1..3:0.119548398654;BREu{core}:0.0806058635248;NFY{A,B,C}:0.0668494913468;SOX2:0.0661599284053;CRX:0.0616632201632;TOPORS:0.0602138207115;NFE2L2:0.0601704689908;HES1:0.0587056873355;FOXQ1:0.0354671863268;MTF1:0.0285240828259;FOXO1,3,4:0.00298598491348;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.03810324362;NR6A1:-0.0676983623632;HMX1:-0.0936486804361;ZBTB6:-0.0942755960409;MTE{core}:-0.111361003208;MED-1{core}:-0.118042833227;MYFfamily:-0.12531161958;PAX5:-0.142169940163;EN1,2:-0.149345842301;RREB1:-0.152876173058;ZNF423:-0.174227435563;GTF2I:-0.217046794137;HLF:-0.238321518819;SOX5:-0.246084665373;REST:-0.285355881357;IRF1,2:-0.294078471197;ELK1,4_GABP{A,B1}:-0.306837683976;PAX6:-0.345852847301;TAL1_TCF{3,4,12}:-0.35134556452;AHR_ARNT_ARNT2:-0.409110435675;PITX1..3:-0.412605299991;POU6F1:-0.416332227023;MZF1:-0.424367325156;CUX2:-0.455463150555;TLX1..3_NFIC{dimer}:-0.46531624371;NRF1:-0.489772671559;HOX{A5,B5}:-0.501193658429;NKX3-2:-0.517290513604;STAT2,4,6:-0.542941373805;ZNF143:-0.554581684837;HNF4A_NR2F1,2:-0.557594490781;E2F1..5:-0.56402382023;ZEB1:-0.573390881076;PAX4:-0.578795847045;TEAD1:-0.58819338684;LHX3,4:-0.588272927484;LEF1_TCF7_TCF7L1,2:-0.621556654997;NR5A1,2:-0.622939154618;GZF1:-0.625802489467;RORA:-0.633858882419;TFDP1:-0.635638434099;TP53:-0.679173438387;CEBPA,B_DDIT3:-0.692585652916;SOX{8,9,10}:-0.710501869993;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.733707126582;HNF1A:-0.734451920334;NANOG:-0.736856548857;IKZF1:-0.74081873833;FOXP3:-0.761850397746;RBPJ:-0.767141653918;ZNF384:-0.797213625435;FOXL1:-0.799450435766;PAX8:-0.804292249048;NKX6-1,2:-0.823673945871;FOXM1:-0.829629179375;PRRX1,2:-0.835009974247;STAT5{A,B}:-0.853384323953;NKX3-1:-0.855463163869;SOX17:-0.881656338194;SNAI1..3:-0.889617135834;ARID5B:-0.892884013448;EVI1:-0.913988099895;IRF7:-0.995416194692;HOX{A4,D4}:-1.03515991543;NKX2-1,4:-1.03577973949;MYOD1:-1.04524273313;GTF2A1,2:-1.04699548323;YY1:-1.0637150237;POU5F1:-1.10726734443;PRDM1:-1.14926993583;NR1H4:-1.15312546067;GATA4:-1.1531286011;OCT4_SOX2{dimer}:-1.15894541623;NFIX:-1.22703485802;HAND1,2:-1.23282036246;FOXD3:-1.26970634901;NKX2-3_NKX2-5:-1.29636227342;NKX2-2,8:-1.30221668359;ZBTB16:-1.32139590042;AIRE:-1.34363486076;UFEwm:-1.37367177004;ONECUT1,2:-1.37732623072;T:-1.42565803318;POU1F1:-1.42829576859;GFI1:-1.42960961916;NR3C1:-1.48044659639;FOXA2:-1.7031802629;MYBL2:-1.82138303022;HMGA1,2:-1.82202856056;GCM1,2:-2.00309044036;GFI1B:-2.12487774376;LMO2:-2.13128080299;CDC5L:-2.26714290362;KLF4:-2.27594824482;ALX4:-2.28837086862;POU3F1..4:-2.31170372913;ADNP_IRX_SIX_ZHX:-2.4021787909;PDX1:-2.64555380772;TEF:-2.70595041965
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11567-120E1;search_select_hide=table117:FF:11567-120E1
}}
}}

Latest revision as of 18:09, 4 June 2020

Name:Mast cell, donor4
Species:Human (Homo sapiens)
Library ID:CNhs12592
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stage67 years old adult
sexfemale
age76
cell typemast cell
cell lineNA
companyNA
collaborationSven Guhl (Charite Germany)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberBsMC-V
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004803
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12592 CAGE DRX008334 DRR009206
Accession ID Hg19

Library idBAMCTSS
CNhs12592 DRZ000631 DRZ002016
Accession ID Hg38

Library idBAMCTSS
CNhs12592 DRZ011981 DRZ013366
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004803
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.GTTTCG sRNA-Seq DRX037126 DRR041492
Accession ID Hg19

Library idBAMCTSS
SRhi10008.GTTTCG DRZ007134


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0.303
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0429
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0211
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.28
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0516
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0.825
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.245
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0516
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0978
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.48
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40.119
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.964
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0.0978
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.354
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.445
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.151
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0436
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.0175
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0885
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.401
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.139
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.268
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.37
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.679
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.431
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD41.121
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0978
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.553
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.94
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.303
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0512
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0516
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.0516
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD41.061
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.571
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.5
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.0978
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.375
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.159
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.319
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0.275
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.378
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.0978
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12592

Jaspar motifP-value
MA0002.20.0148
MA0003.10.371
MA0004.10.739
MA0006.10.795
MA0007.10.427
MA0009.10.285
MA0014.10.604
MA0017.10.0415
MA0018.25.07102e-12
MA0019.10.235
MA0024.10.488
MA0025.11.153e-4
MA0027.10.585
MA0028.10.309
MA0029.18.01018e-4
MA0030.11.7294e-5
MA0031.10.0719
MA0035.29.80771e-10
MA0038.10.0309
MA0039.20.00599
MA0040.10.869
MA0041.10.273
MA0042.10.117
MA0043.18.26106e-10
MA0046.10.691
MA0047.20.433
MA0048.10.95
MA0050.10.294
MA0051.10.997
MA0052.11.22969e-4
MA0055.10.8
MA0057.10.355
MA0058.10.248
MA0059.10.203
MA0060.10.778
MA0061.19.56687e-19
MA0062.22.74427e-6
MA0065.20.0749
MA0066.10.589
MA0067.12.05574e-9
MA0068.13.25545e-4
MA0069.10.787
MA0070.10.157
MA0071.10.655
MA0072.10.467
MA0073.10.285
MA0074.10.62
MA0076.10.248
MA0077.10.505
MA0078.10.644
MA0079.20.00454
MA0080.22.50925e-11
MA0081.16.61957e-4
MA0083.10.269
MA0084.10.746
MA0087.10.937
MA0088.10.00929
MA0090.10.00427
MA0091.10.288
MA0092.10.417
MA0093.10.698
MA0099.22.87943e-10
MA0100.10.732
MA0101.19.2531e-18
MA0102.20.31
MA0103.10.00546
MA0104.20.428
MA0105.16.22339e-6
MA0106.10.0167
MA0107.11.31194e-19
MA0108.21.2152e-4
MA0111.10.284
MA0112.20.526
MA0113.10.538
MA0114.10.0377
MA0115.10.649
MA0116.10.0675
MA0117.10.0054
MA0119.10.0498
MA0122.10.656
MA0124.10.661
MA0125.10.225
MA0131.10.128
MA0135.10.201
MA0136.12.36141e-10
MA0137.20.499
MA0138.20.757
MA0139.10.523
MA0140.14.52996e-7
MA0141.10.187
MA0142.10.142
MA0143.10.266
MA0144.10.701
MA0145.10.514
MA0146.10.0301
MA0147.10.123
MA0148.10.458
MA0149.10.545
MA0150.10.00885
MA0152.10.149
MA0153.10.257
MA0154.10.608
MA0155.10.784
MA0156.17.00752e-5
MA0157.10.82
MA0159.10.502
MA0160.10.268
MA0162.10.0384
MA0163.10.097
MA0164.10.667
MA0258.10.842
MA0259.10.48



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12592

Novel motifP-value
10.154
100.555
1000.279
1010.365
1020.772
1030.254
1040.876
1050.307
1060.511
1070.01
1080.162
1090.995
110.391
1100.265
1110.102
1120.922
1130.434
1140.0844
1150.559
1160.115
1170.0393
1180.283
1190.114
120.653
1200.0854
1210.269
1220.269
1230.477
1240.0562
1250.204
1260.505
1270.826
1280.704
1290.0175
130.666
1300.538
1310.851
1320.125
1330.184
1340.497
1350.859
1360.0951
1370.0708
1380.17
1390.657
140.717
1400.184
1410.183
1420.107
1430.658
1440.904
1450.321
1460.405
1470.164
1480.608
1490.104
150.459
1500.846
1510.389
1520.0103
1530.482
1540.951
1550.262
1560.822
1570.868
1580.381
1590.583
160.233
1600.0542
1610.398
1620.0658
1630.196
1640.36
1650.684
1660.0304
1670.425
1680.116
1690.697
170.681
180.269
190.209
20.114
200.325
210.53
220.591
230.993
240.987
250.837
260.407
270.213
280.525
290.317
30.234
300.494
310.453
320.0034
330.671
340.796
350.0806
360.931
370.433
380.739
390.552
40.43
400.619
410.686
420.266
430.39
440.0857
450.757
460.243
470.314
480.221
490.432
50.616
500.958
510.954
520.95
530.967
540.902
550.471
560.566
570.0884
580.703
590.897
60.801
600.962
610.694
620.804
630.313
640.465
650.542
660.899
670.383
680.536
690.206
70.842
700.318
710.369
720.47
730.05
740.00461
750.649
760.998
770.085
780.649
790.428
80.1
800.57
810.233
820.76
830.841
840.14
850.914
860.0696
870.199
880.446
890.0248
90.76
900.197
910.586
920.335
930.33
940.86
950.0199
960.226
970.59
980.374
995.91839e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12592


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0002274 (histamine secreting cell)
0000219 (motile cell)
0000163 (endocrine cell)
0000457 (biogenic amine secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000097 (mast cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000260 (mast cell sample)
0000261 (mast cell- heparinase treated sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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