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{{f5samples
{{f5samples
|id=FF:11600-120H7
|DRA_sample_Accession=CAGE@SAMD00005904
|name=Urothelial Cells, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005904
|sample_id=11600
|accession_numbers=CAGE;DRX008526;DRR009398;DRZ000823;DRZ002208;DRZ012173;DRZ013558
|rna_tube_id=120H7
|accession_numbers_RNASeq=sRNA-Seq;DRX037163;DRR041529;DRZ007171
|rna_box=120
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0004119,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000486,UBERON:0010317,UBERON:0000365,UBERON:0001008
|rna_position=H7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0000244,CL:0000731
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=lot:4521
|rna_catalog_number=SC4325
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=bladder
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=10
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=urothelial cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10
|rna_concentration=1.34
|sample_note=
|profile_hcage=CNhs12091,LSID839,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10010,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000244,CL:0000255,CL:0000548,CL:0000731,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000119,UBERON:0000365,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000486,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0001008,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0004119,UBERON:0005423,UBERON:0005910,UBERON:0005911,UBERON:0006554
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000191
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.73!593.02!IRF6;;chr1:209979411..209979433,-!p2@IRF6!2.41!254.39!IRF6;;chr1:6479968..6479986,-!p1@HES2!2.18!149.94!HES2;;chr17:7493405..7493419,-!p1@SOX15!1.99!97.71!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.80!94.34!ZNF385A;;chr3:111314186..111314204,-!p1@ZBED2!1.75!55.60!ZBED2;;chr12:54785054..54785072,-!p4@ZNF385A!1.74!60.65!ZNF385A;;chr17:80797886..80797906,-!p1@ZNF750!1.67!45.49!ZNF750;;chr17:7492684..7492778,-!p2@SOX15!1.66!90.97!SOX15;;chr11:34642612..34642646,+!p1@EHF!1.65!43.80!EHF;;chr6:10415276..10415341,-!p2@TFAP2A!1.64!52.23!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.63!67.39!TFAP2A;;chr3:189507432..189507459,+!p1@TP63!1.60!38.75!TP63;;chr1:209979375..209979386,-!p4@IRF6!1.60!38.75!IRF6;;chr15:83953397..83953425,-!p1@BNC1!1.58!42.12!BNC1;;chr2:46524897..46524911,+!p2@EPAS1!1.44!72.44!EPAS1;;chr1:24645832..24645853,+!p1@GRHL3!1.39!23.59!GRHL3;;chr10:8096631..8096660,+!p1@GATA3!1.37!26.96!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!1.36!187.00!PPP1R13L;;chr12:66218255..66218304,+!p3@HMGA2!1.30!50.54!HMGA2;;chr8:10588010..10588030,-!p1@SOX7!1.29!18.53!SOX7;;chr6:10415484..10415508,-!p3@TFAP2A!1.25!16.85!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.21!15.16!ELF3;;chr10:8096772..8096787,+!p2@GATA3!1.18!16.85!GATA3;;chr1:201979703..201979721,+!p2@ELF3!1.16!13.48!ELF3;;chr3:111314230..111314241,-!p2@ZBED2!1.16!13.48!ZBED2;;chr4:57547454..57547469,-!p1@HOPX!1.16!13.48!HOPX;;chr6:10412576..10412599,-!p5@TFAP2A!1.16!13.48!TFAP2A;;chr1:37940170..37940190,+!p1@ZC3H12A!1.15!160.05!ZC3H12A;;chr13:73633131..73633149,+!p1@KLF5!1.12!129.72!KLF5;;chr11:65554563..65554576,+!p2@OVOL1!1.11!11.79!OVOL1;;chr5:2751762..2751784,-!p1@IRX2!1.11!11.79!IRX2;;chr7:27205106..27205134,-!p2@HOXA9!1.11!11.79!HOXA9;;chr17:46682321..46682362,-!p1@HOXB6!1.11!11.79!HOXB6;;chr17:80797863..80797874,-!p2@ZNF750!1.11!11.79!ZNF750;;chr8:49833948..49833973,-!p2@SNAI2!1.10!74.13!SNAI2;;chr8:49833978..49833996,-!p1@SNAI2!1.09!234.18!SNAI2;;chr6:1312325..1312340,+!p1@FOXQ1!1.09!18.53!FOXQ1;;chr12:66218598..66218645,+!p2@HMGA2!1.06!48.86!HMGA2;;chr19:42636586..42636607,-!p1@POU2F2!1.05!28.64!POU2F2;;chr7:27205136..27205164,-!p1@HOXA9!1.05!10.11!HOXA9;;chr8:102504651..102504683,+!p1@GRHL2!1.05!10.11!GRHL2;;chr22:19748231..19748317,+!p1@TBX1!1.05!10.11!TBX1;;chr2:176969228..176969260,+!p1@HOXD11!1.05!10.11!HOXD11;;chr2:176994408..176994492,+!p1@HOXD8!1.05!10.11!HOXD8;;chr5:134369905..134369972,-!p1@PITX1!1.03!15.16!PITX1;;chr2:46524878..46524891,+!p3@EPAS1!1.02!16.85!EPAS1;;chr3:5021026..5021035,+!p5@BHLHE40!1.02!11.79!BHLHE40;;chr15:67418119..67418162,+!p5@SMAD3!1.00!10.11!SMAD3;;chr17:46675558..46675577,-!p2@HOXB6!0.97!8.42!HOXB6;;chr19:20278043..20278054,+!p2@ZNF486!0.97!8.42!ZNF486;;chr6:10413188..10413249,-!p7@TFAP2A!0.97!8.42!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!0.97!8.42!SPDEF;;chr11:65554528..65554546,+!p1@OVOL1!0.97!8.42!OVOL1;;chr19:45908286..45908291,-!p3@PPP1R13L!0.97!8.42!PPP1R13L;;chr1:209979449..209979460,-!p3@IRF6!0.97!8.42!IRF6;;chr1:935467..935484,-!p1@HES4!0.96!37.06!HES4;;chr12:66218212..66218244,+!p5@HMGA2!0.95!11.79!HMGA2;;chr8:128748308..128748324,+!p2@MYC!0.92!210.59!MYC;;chr17:70117153..70117174,+!p1@SOX9!0.92!79.18!SOX9;;chr12:115121962..115121987,-!p1@TBX3!0.92!64.02!TBX3;;chr17:38465413..38465438,+!p5@RARA!0.92!11.79!RARA;;chr17:45928443..45928473,-!p2@SP6!0.89!6.74!SP6;;chr11:129245526..129245553,+!p1@BARX2!0.89!6.74!BARX2;;chr12:54332608..54332636,+!p1@HOXC13!0.89!6.74!HOXC13;;chr14:38064429..38064486,-!p1@FOXA1!0.89!6.74!FOXA1;;chr5:2751785..2751808,-!p2@IRX2!0.89!6.74!IRX2;;chr19:45908278..45908282,-!p5@PPP1R13L!0.89!6.74!PPP1R13L;;chr1:10856694..10856715,-!p3@CASZ1!0.89!6.74!CASZ1;;chr1:24645921..24645973,+!p2@GRHL3!0.89!6.74!GRHL3;;chr22:24093154..24093183,-!p2@ZNF70!0.89!6.74!ZNF70;;chr2:114036488..114036504,-!p1@PAX8!0.89!6.74!PAX8;;chr3:189507460..189507471,+!p3@TP63!0.89!6.74!TP63;;chrX:85403445..85403479,+!p2@DACH2!0.89!6.74!DACH2;;chrY:21906594..21906622,-!p1@KDM5D!0.89!6.74!KDM5D;;chr6:106546808..106546833,+!p3@PRDM1!0.88!8.42!PRDM1;;chr17:41623692..41623715,-!p1@ETV4!0.87!28.64!ETV4;;chr14:21566731..21566836,-!p1@ZNF219!0.84!67.39!ZNF219;;chr16:79633894..79633954,-!p3@MAF!0.84!11.79!MAF;;chr7:27135591..27135658,-!p1@HOXA1!0.84!11.79!HOXA1;;chr17:46687959..46688007,-!p2@HOXB7!0.84!8.42!HOXB7;;chr11:615570..615721,-!p2@IRF7!0.83!11.79!IRF7;;chr6:21597765..21597779,+!p2@SOX4!0.81!47.17!SOX4;;chr17:38465441..38465481,+!p6@RARA!0.80!6.74!RARA;;chr6:21593973..21593988,+!p1@SOX4!0.78!200.48!SOX4;;chr1:154975258..154975330,+!p1@ZBTB7B!0.78!20.22!ZBTB7B;;chr16:86612320..86612394,+!p1@FOXL1!0.78!5.05!FOXL1;;chr17:36104873..36104903,-!p3@HNF1B!0.78!5.05!HNF1B;;chr17:45928521..45928539,-!p1@SP6!0.78!5.05!SP6;;chr17:46703687..46703740,-!p1@HOXB9!0.78!5.05!HOXB9;;chr17:46703942..46703964,-!p4@HOXB9!0.78!5.05!HOXB9;;chr17:46806067..46806097,-!p1@HOXB13!0.78!5.05!HOXB13;;chrY:21906623..21906637,-!p3@KDM5D!0.78!5.05!KDM5D;;chr10:8097321.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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000731;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg38.nobarcode.ctss.bed.gz
|id=FF:11600-120H7
|is_a=EFO:0002091;;FF:0000191
|is_obsolete=
|library_id=CNhs12091
|library_id_phase_based=2:CNhs12091
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11600
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GGTAGC.11600
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11600
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GGTAGC.11600
|name=Urothelial Cells, donor2
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12091,LSID839,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10010,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=120
|rna_catalog_number=SC4325
|rna_concentration=1.34
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=lot:4521
|rna_od260/230=
|rna_od260/280=
|rna_position=H7
|rna_rin=10
|rna_sample_type=total RNA
|rna_tube_id=120H7
|rna_weight_ug=10
|rnaseq_library_id=SRhi10010.GGTAGC
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=urothelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.82144028587972e-247!GO:0005737;cytoplasm;1.20038842012513e-190!GO:0044444;cytoplasmic part;5.77777470852933e-133!GO:0043226;organelle;1.71056108456661e-120!GO:0043229;intracellular organelle;3.36787776686532e-120!GO:0043231;intracellular membrane-bound organelle;7.22834876385384e-110!GO:0043227;membrane-bound organelle;1.57219010419999e-109!GO:0044422;organelle part;5.209367336725e-104!GO:0044446;intracellular organelle part;4.90467661604506e-103!GO:0005739;mitochondrion;1.54652486441006e-67!GO:0032991;macromolecular complex;6.47853195963049e-65!GO:0030529;ribonucleoprotein complex;1.99681037516399e-63!GO:0005515;protein binding;2.20622201829815e-63!GO:0044237;cellular metabolic process;1.48034438870019e-51!GO:0044238;primary metabolic process;3.54676869412969e-51!GO:0031090;organelle membrane;6.24988863432785e-51!GO:0005840;ribosome;5.07999605084201e-50!GO:0019538;protein metabolic process;2.49078773105972e-47!GO:0006412;translation;9.10454992115742e-47!GO:0009058;biosynthetic process;1.55634156145939e-46!GO:0003735;structural constituent of ribosome;7.20659083871696e-46!GO:0044429;mitochondrial part;2.86277567759169e-45!GO:0043233;organelle lumen;1.53870936474731e-44!GO:0031974;membrane-enclosed lumen;1.53870936474731e-44!GO:0044249;cellular biosynthetic process;2.29739262819083e-43!GO:0003723;RNA binding;4.22979904691435e-41!GO:0044260;cellular macromolecule metabolic process;1.0717447071434e-40!GO:0044267;cellular protein metabolic process;1.98497542817266e-40!GO:0043170;macromolecule metabolic process;1.77884560234862e-39!GO:0033279;ribosomal subunit;7.27852716194309e-39!GO:0005829;cytosol;1.14140270587452e-38!GO:0009059;macromolecule biosynthetic process;1.45372782457339e-38!GO:0031967;organelle envelope;1.64681198191338e-34!GO:0031975;envelope;3.35074152973969e-34!GO:0015031;protein transport;1.35415637592926e-33!GO:0033036;macromolecule localization;2.74976907558292e-32!GO:0043234;protein complex;5.98901077110636e-32!GO:0044428;nuclear part;8.21687516462326e-32!GO:0045184;establishment of protein localization;1.0261690104232e-31!GO:0008104;protein localization;1.13368705627061e-31!GO:0016043;cellular component organization and biogenesis;1.27678564400309e-31!GO:0005740;mitochondrial envelope;1.95811909804464e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.19308958370795e-29!GO:0031966;mitochondrial membrane;4.70993599501449e-29!GO:0019866;organelle inner membrane;7.53793587003456e-27!GO:0006396;RNA processing;3.02824160948017e-26!GO:0005743;mitochondrial inner membrane;7.48792002887074e-26!GO:0046907;intracellular transport;1.05934894256202e-25!GO:0065003;macromolecular complex assembly;1.57262567447716e-25!GO:0043228;non-membrane-bound organelle;1.03435306080474e-24!GO:0043232;intracellular non-membrane-bound organelle;1.03435306080474e-24!GO:0044445;cytosolic part;1.53966761645737e-24!GO:0006886;intracellular protein transport;1.83334330178259e-23!GO:0005783;endoplasmic reticulum;5.74373349082206e-23!GO:0022607;cellular component assembly;1.00375558550022e-22!GO:0031981;nuclear lumen;3.51117149532803e-21!GO:0006119;oxidative phosphorylation;1.21389807988123e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.3484483717591e-20!GO:0005634;nucleus;3.99831311849174e-20!GO:0012505;endomembrane system;5.89035107436468e-20!GO:0015935;small ribosomal subunit;5.96291000395689e-20!GO:0015934;large ribosomal subunit;6.12370639326336e-20!GO:0044455;mitochondrial membrane part;1.20718471386423e-19!GO:0044432;endoplasmic reticulum part;1.4821252725837e-19!GO:0016071;mRNA metabolic process;2.71005599256974e-19!GO:0006996;organelle organization and biogenesis;3.7765715039806e-19!GO:0008380;RNA splicing;3.79379038518294e-18!GO:0048770;pigment granule;1.32622620451606e-17!GO:0042470;melanosome;1.32622620451606e-17!GO:0006397;mRNA processing;3.4938263560225e-17!GO:0031980;mitochondrial lumen;5.5523085653427e-17!GO:0005759;mitochondrial matrix;5.5523085653427e-17!GO:0012501;programmed cell death;3.20881483550335e-16!GO:0051649;establishment of cellular localization;4.55074313609906e-16!GO:0006915;apoptosis;6.64641759707275e-16!GO:0051186;cofactor metabolic process;8.19375584827412e-16!GO:0051641;cellular localization;1.04234349049457e-15!GO:0005794;Golgi apparatus;1.18461368092405e-15!GO:0005746;mitochondrial respiratory chain;2.21502902370121e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.93174947605326e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.84791090591223e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.46131865543722e-15!GO:0005789;endoplasmic reticulum membrane;6.76563928228712e-15!GO:0008219;cell death;8.27815316207366e-15!GO:0016265;death;8.27815316207366e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.71157471036399e-15!GO:0050136;NADH dehydrogenase (quinone) activity;2.10878563001308e-14!GO:0003954;NADH dehydrogenase activity;2.10878563001308e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.10878563001308e-14!GO:0006457;protein folding;2.87039946130603e-13!GO:0008134;transcription factor binding;3.52910997474745e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.22720851508256e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;5.26240462755868e-13!GO:0016462;pyrophosphatase activity;5.54057041705994e-13!GO:0044248;cellular catabolic process;6.26408118210198e-13!GO:0005761;mitochondrial ribosome;8.74898997752093e-13!GO:0000313;organellar ribosome;8.74898997752093e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.74898997752093e-13!GO:0042773;ATP synthesis coupled electron transport;8.74898997752093e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.09048014317543e-12!GO:0017111;nucleoside-triphosphatase activity;1.21248825587334e-12!GO:0005681;spliceosome;1.32379208630586e-12!GO:0006732;coenzyme metabolic process;1.48526862356757e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.7545459327517e-12!GO:0045271;respiratory chain complex I;1.7545459327517e-12!GO:0005747;mitochondrial respiratory chain complex I;1.7545459327517e-12!GO:0006605;protein targeting;2.36876784148954e-12!GO:0043283;biopolymer metabolic process;2.45461054872763e-12!GO:0016874;ligase activity;2.68076138151892e-12!GO:0022618;protein-RNA complex assembly;4.04731735219135e-12!GO:0005730;nucleolus;5.34053431388415e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.5308253890637e-12!GO:0000502;proteasome complex (sensu Eukaryota);6.47438535066819e-12!GO:0010467;gene expression;7.04204307903282e-12!GO:0009057;macromolecule catabolic process;8.08464816926335e-12!GO:0009055;electron carrier activity;1.13024591707428e-11!GO:0044265;cellular macromolecule catabolic process;1.62553993614789e-11!GO:0016491;oxidoreductase activity;1.69010088857369e-11!GO:0005654;nucleoplasm;1.86692148957072e-11!GO:0043067;regulation of programmed cell death;2.80331982578211e-11!GO:0042981;regulation of apoptosis;4.17808995283958e-11!GO:0043285;biopolymer catabolic process;4.52615464384984e-11!GO:0043412;biopolymer modification;6.90218366323025e-11!GO:0000166;nucleotide binding;9.28370231369909e-11!GO:0051082;unfolded protein binding;1.90564823235641e-10!GO:0006461;protein complex assembly;2.01335881059575e-10!GO:0016192;vesicle-mediated transport;2.95000553240009e-10!GO:0006464;protein modification process;3.57897424437304e-10!GO:0048193;Golgi vesicle transport;5.38561042041165e-10!GO:0008135;translation factor activity, nucleic acid binding;5.74998265491138e-10!GO:0030163;protein catabolic process;7.43334277046052e-10!GO:0006512;ubiquitin cycle;7.81100202265541e-10!GO:0044451;nucleoplasm part;1.03569262787686e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;1.37769098861916e-09!GO:0044257;cellular protein catabolic process;2.18425964370459e-09!GO:0019941;modification-dependent protein catabolic process;2.20715285591324e-09!GO:0043632;modification-dependent macromolecule catabolic process;2.20715285591324e-09!GO:0051188;cofactor biosynthetic process;3.07532302103158e-09!GO:0009056;catabolic process;3.31380150857026e-09!GO:0006511;ubiquitin-dependent protein catabolic process;4.49862328403572e-09!GO:0006259;DNA metabolic process;4.53519728970689e-09!GO:0003712;transcription cofactor activity;5.40846812396002e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.51194640296133e-08!GO:0007005;mitochondrion organization and biogenesis;1.86702026429837e-08!GO:0042254;ribosome biogenesis and assembly;2.14042124210051e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.28943413106835e-08!GO:0043687;post-translational protein modification;2.46110986533789e-08!GO:0005768;endosome;2.8528650280832e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.14140091760703e-08!GO:0048475;coated membrane;3.8321307285139e-08!GO:0030117;membrane coat;3.8321307285139e-08!GO:0008565;protein transporter activity;3.8321307285139e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.97535099616893e-08!GO:0048522;positive regulation of cellular process;4.56684754910006e-08!GO:0005773;vacuole;4.56952276876091e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;4.73733382153969e-08!GO:0000375;RNA splicing, via transesterification reactions;4.73733382153969e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.73733382153969e-08!GO:0048523;negative regulation of cellular process;4.73871366275873e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.73871366275873e-08!GO:0006413;translational initiation;6.89802222345423e-08!GO:0006446;regulation of translational initiation;9.21991388214413e-08!GO:0003743;translation initiation factor activity;1.00288858667456e-07!GO:0006091;generation of precursor metabolites and energy;1.06275946225653e-07!GO:0006163;purine nucleotide metabolic process;1.06275946225653e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.12749387747374e-07!GO:0009259;ribonucleotide metabolic process;1.12749387747374e-07!GO:0017076;purine nucleotide binding;1.1484801740653e-07!GO:0005793;ER-Golgi intermediate compartment;1.41511709897737e-07!GO:0030120;vesicle coat;1.51709395198788e-07!GO:0030662;coated vesicle membrane;1.51709395198788e-07!GO:0009150;purine ribonucleotide metabolic process;1.53083458133842e-07!GO:0051246;regulation of protein metabolic process;1.88700869298997e-07!GO:0007049;cell cycle;2.06795148567961e-07!GO:0044431;Golgi apparatus part;2.15024898986568e-07!GO:0032553;ribonucleotide binding;2.19506269017964e-07!GO:0032555;purine ribonucleotide binding;2.19506269017964e-07!GO:0006164;purine nucleotide biosynthetic process;2.65154906907154e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.65513496739776e-07!GO:0015986;ATP synthesis coupled proton transport;2.66622257020913e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.66622257020913e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.75411683109007e-07!GO:0043069;negative regulation of programmed cell death;3.77356706767651e-07!GO:0008639;small protein conjugating enzyme activity;4.04756120208004e-07!GO:0003924;GTPase activity;4.16970209125076e-07!GO:0009108;coenzyme biosynthetic process;4.57973553850891e-07!GO:0048519;negative regulation of biological process;4.6330395585561e-07!GO:0000074;regulation of progression through cell cycle;4.97795384872688e-07!GO:0009260;ribonucleotide biosynthetic process;5.03733364244256e-07!GO:0009141;nucleoside triphosphate metabolic process;5.23571512077414e-07!GO:0051726;regulation of cell cycle;5.37528033261985e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.43025574348888e-07!GO:0000323;lytic vacuole;5.59991003963517e-07!GO:0005764;lysosome;5.59991003963517e-07!GO:0004842;ubiquitin-protein ligase activity;7.54295667768268e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.75924580100167e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.97442658320572e-07!GO:0043066;negative regulation of apoptosis;9.43702243930979e-07!GO:0019787;small conjugating protein ligase activity;1.10919168224626e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.12283149668646e-06!GO:0019829;cation-transporting ATPase activity;1.13326480388982e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.29379947088636e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.29379947088636e-06!GO:0006913;nucleocytoplasmic transport;1.34886508577138e-06!GO:0006754;ATP biosynthetic process;1.38833225725565e-06!GO:0006753;nucleoside phosphate metabolic process;1.38833225725565e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.43426827474227e-06!GO:0046034;ATP metabolic process;1.77675006136016e-06!GO:0017038;protein import;1.80873738509396e-06!GO:0045259;proton-transporting ATP synthase complex;1.81114199309514e-06!GO:0048518;positive regulation of biological process;1.89353702624036e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.94817988705579e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.94817988705579e-06!GO:0005770;late endosome;1.95958148639347e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.30609737465954e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.30609737465954e-06!GO:0009117;nucleotide metabolic process;2.4503164072031e-06!GO:0051169;nuclear transport;2.67892855756138e-06!GO:0031988;membrane-bound vesicle;2.84615516942785e-06!GO:0006916;anti-apoptosis;3.30651873379486e-06!GO:0016787;hydrolase activity;4.70082515893577e-06!GO:0009967;positive regulation of signal transduction;6.94220140858385e-06!GO:0000139;Golgi membrane;7.06082250182294e-06!GO:0016469;proton-transporting two-sector ATPase complex;7.39345989996321e-06!GO:0006752;group transfer coenzyme metabolic process;8.13218607885284e-06!GO:0016740;transferase activity;9.4291037109473e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.62355324265124e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;1.2561022265868e-05!GO:0022402;cell cycle process;1.26712036570679e-05!GO:0016881;acid-amino acid ligase activity;1.39066609684649e-05!GO:0006399;tRNA metabolic process;1.51062979540507e-05!GO:0005635;nuclear envelope;1.56241687662441e-05!GO:0005788;endoplasmic reticulum lumen;1.58429360752474e-05!GO:0048468;cell development;1.64494441437537e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.67067210836898e-05!GO:0009060;aerobic respiration;1.67505124445286e-05!GO:0030554;adenyl nucleotide binding;1.70032924120629e-05!GO:0005524;ATP binding;1.72360187463968e-05!GO:0042802;identical protein binding;1.8075148783329e-05!GO:0007243;protein kinase cascade;1.86802247209162e-05!GO:0006364;rRNA processing;2.31723884821529e-05!GO:0005762;mitochondrial large ribosomal subunit;2.31723884821529e-05!GO:0000315;organellar large ribosomal subunit;2.31723884821529e-05!GO:0065009;regulation of a molecular function;2.48005376074901e-05!GO:0016604;nuclear body;2.56137835327688e-05!GO:0032559;adenyl ribonucleotide binding;2.58207556366448e-05!GO:0016072;rRNA metabolic process;2.76318728393976e-05!GO:0031252;leading edge;2.85805999869159e-05!GO:0044440;endosomal part;3.02827579598899e-05!GO:0010008;endosome membrane;3.02827579598899e-05!GO:0016887;ATPase activity;3.28200104889928e-05!GO:0030118;clathrin coat;3.37153018540408e-05!GO:0000785;chromatin;3.39362507193515e-05!GO:0006323;DNA packaging;3.49828220389235e-05!GO:0004298;threonine endopeptidase activity;4.22594160820641e-05!GO:0019843;rRNA binding;4.60403787053936e-05!GO:0042623;ATPase activity, coupled;5.12726204135408e-05!GO:0006366;transcription from RNA polymerase II promoter;5.21440922578862e-05!GO:0031410;cytoplasmic vesicle;5.23468303872824e-05!GO:0031982;vesicle;5.23797559459454e-05!GO:0006979;response to oxidative stress;5.50027134736052e-05!GO:0008610;lipid biosynthetic process;6.06698869875462e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.17596732977065e-05!GO:0008632;apoptotic program;7.00703083471123e-05!GO:0016563;transcription activator activity;7.24231924895946e-05!GO:0006793;phosphorus metabolic process;7.39971244028365e-05!GO:0006796;phosphate metabolic process;7.39971244028365e-05!GO:0045786;negative regulation of progression through cell cycle;7.58618654106996e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.77390194545488e-05!GO:0004812;aminoacyl-tRNA ligase activity;7.77390194545488e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.77390194545488e-05!GO:0045333;cellular respiration;8.21952609872413e-05!GO:0045454;cell redox homeostasis;8.76160560394452e-05!GO:0051187;cofactor catabolic process;0.000112407846382317!GO:0000278;mitotic cell cycle;0.000116605216289104!GO:0016044;membrane organization and biogenesis;0.000143041208402531!GO:0006333;chromatin assembly or disassembly;0.000143041208402531!GO:0005525;GTP binding;0.000146064945958493!GO:0003713;transcription coactivator activity;0.000149306894193187!GO:0006082;organic acid metabolic process;0.000164902848723552!GO:0005798;Golgi-associated vesicle;0.000164902848723552!GO:0031965;nuclear membrane;0.000164902848723552!GO:0043038;amino acid activation;0.000168832104808497!GO:0006418;tRNA aminoacylation for protein translation;0.000168832104808497!GO:0043039;tRNA aminoacylation;0.000168832104808497!GO:0030119;AP-type membrane coat adaptor complex;0.000169639502111947!GO:0032446;protein modification by small protein conjugation;0.000169639502111947!GO:0006099;tricarboxylic acid cycle;0.000178312041143508!GO:0046356;acetyl-CoA catabolic process;0.000178312041143508!GO:0019752;carboxylic acid metabolic process;0.000190894327127018!GO:0031968;organelle outer membrane;0.000192758429970457!GO:0019867;outer membrane;0.00019545899771653!GO:0043065;positive regulation of apoptosis;0.000202155642242597!GO:0006118;electron transport;0.000205876937248064!GO:0003714;transcription corepressor activity;0.000214131243040596!GO:0043068;positive regulation of programmed cell death;0.000215853462107098!GO:0065002;intracellular protein transport across a membrane;0.000220974923976408!GO:0005905;coated pit;0.000230396010685311!GO:0044453;nuclear membrane part;0.000266520205282156!GO:0009109;coenzyme catabolic process;0.00027267693487985!GO:0016567;protein ubiquitination;0.000286860847755773!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000286860847755773!GO:0015399;primary active transmembrane transporter activity;0.000286860847755773!GO:0044255;cellular lipid metabolic process;0.000291671003256841!GO:0043623;cellular protein complex assembly;0.000292989433575679!GO:0030131;clathrin adaptor complex;0.000305072141412975!GO:0006414;translational elongation;0.000310708773735069!GO:0008654;phospholipid biosynthetic process;0.000323834947761357!GO:0006084;acetyl-CoA metabolic process;0.000332622446401895!GO:0019899;enzyme binding;0.000350779295928692!GO:0016310;phosphorylation;0.000360191304756543!GO:0065004;protein-DNA complex assembly;0.000364430707739284!GO:0030036;actin cytoskeleton organization and biogenesis;0.000381813597490751!GO:0016564;transcription repressor activity;0.000386873541682437!GO:0051170;nuclear import;0.000388069890757841!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000403599372852095!GO:0016779;nucleotidyltransferase activity;0.000407387058355521!GO:0005741;mitochondrial outer membrane;0.000471709426114229!GO:0006606;protein import into nucleus;0.000477803204691779!GO:0006334;nucleosome assembly;0.000499454864192122!GO:0016126;sterol biosynthetic process;0.000530937154304259!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000546751898258512!GO:0030132;clathrin coat of coated pit;0.000577925888513241!GO:0006818;hydrogen transport;0.000623922628188273!GO:0001726;ruffle;0.000656023746532279!GO:0000314;organellar small ribosomal subunit;0.000663573313865665!GO:0005763;mitochondrial small ribosomal subunit;0.000663573313865665!GO:0015992;proton transport;0.000670089207286383!GO:0051427;hormone receptor binding;0.000677407713319443!GO:0031497;chromatin assembly;0.000746019553552396!GO:0033116;ER-Golgi intermediate compartment membrane;0.000851803453574979!GO:0008637;apoptotic mitochondrial changes;0.000896192096147271!GO:0008250;oligosaccharyl transferase complex;0.000898509591131564!GO:0000245;spliceosome assembly;0.000926941577136496!GO:0030133;transport vesicle;0.000942562320914863!GO:0030867;rough endoplasmic reticulum membrane;0.000956416565660977!GO:0016607;nuclear speck;0.00103356377547392!GO:0007006;mitochondrial membrane organization and biogenesis;0.00103972129250035!GO:0030658;transport vesicle membrane;0.00107208965025823!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00109077743367846!GO:0022890;inorganic cation transmembrane transporter activity;0.00109944773412045!GO:0006066;alcohol metabolic process;0.00110046372457518!GO:0044262;cellular carbohydrate metabolic process;0.00111719316883324!GO:0043681;protein import into mitochondrion;0.00116658560432001!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00118018969621096!GO:0035257;nuclear hormone receptor binding;0.00118966258554445!GO:0016853;isomerase activity;0.00119500666529785!GO:0030125;clathrin vesicle coat;0.00125019286672937!GO:0030665;clathrin coated vesicle membrane;0.00125019286672937!GO:0003899;DNA-directed RNA polymerase activity;0.00125019286672937!GO:0016125;sterol metabolic process;0.0012919779857589!GO:0032561;guanyl ribonucleotide binding;0.00144819655893152!GO:0019001;guanyl nucleotide binding;0.00144819655893152!GO:0001836;release of cytochrome c from mitochondria;0.0015333763911271!GO:0008092;cytoskeletal protein binding;0.00154922995914345!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00154980151057543!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00154980151057543!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00154980151057543!GO:0051276;chromosome organization and biogenesis;0.00159001414135821!GO:0043021;ribonucleoprotein binding;0.00159148151929118!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00179244353155173!GO:0006839;mitochondrial transport;0.00180163564572538!GO:0005885;Arp2/3 protein complex;0.0018170909665654!GO:0006629;lipid metabolic process;0.00192644286680284!GO:0006917;induction of apoptosis;0.00193662185299271!GO:0051920;peroxiredoxin activity;0.00197769362858696!GO:0006626;protein targeting to mitochondrion;0.00199056323889276!GO:0050790;regulation of catalytic activity;0.00204719510536157!GO:0043492;ATPase activity, coupled to movement of substances;0.00206655543668544!GO:0030029;actin filament-based process;0.00214264259288736!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00215518798753344!GO:0030031;cell projection biogenesis;0.00215614986384702!GO:0005774;vacuolar membrane;0.00218760577908306!GO:0005048;signal sequence binding;0.00222856825881043!GO:0055092;sterol homeostasis;0.00224235476810445!GO:0042632;cholesterol homeostasis;0.00224235476810445!GO:0030176;integral to endoplasmic reticulum membrane;0.0022798593591718!GO:0031324;negative regulation of cellular metabolic process;0.00242326096082309!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00250042545822527!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0025256480984774!GO:0012502;induction of programmed cell death;0.00255188874441392!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00255188874441392!GO:0031902;late endosome membrane;0.00256610521444976!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0027038828585414!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0027038828585414!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0027038828585414!GO:0043284;biopolymer biosynthetic process;0.00275075508035726!GO:0030660;Golgi-associated vesicle membrane;0.00277712052902315!GO:0043488;regulation of mRNA stability;0.00277712052902315!GO:0043487;regulation of RNA stability;0.00277712052902315!GO:0016049;cell growth;0.00281653453359669!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00281653453359669!GO:0051329;interphase of mitotic cell cycle;0.00294541520951015!GO:0051789;response to protein stimulus;0.0029612368648396!GO:0006986;response to unfolded protein;0.0029612368648396!GO:0005791;rough endoplasmic reticulum;0.00302522688066131!GO:0045941;positive regulation of transcription;0.00302522688066131!GO:0008361;regulation of cell size;0.00302522688066131!GO:0045893;positive regulation of transcription, DNA-dependent;0.0031444102319892!GO:0007264;small GTPase mediated signal transduction;0.00331473563316519!GO:0008243;plasminogen activator activity;0.00339133543651768!GO:0008283;cell proliferation;0.00339133543651768!GO:0018196;peptidyl-asparagine modification;0.00341976519827427!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00341976519827427!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00345521320955613!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00347193676890616!GO:0045926;negative regulation of growth;0.00352361036065016!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00358694355268811!GO:0015002;heme-copper terminal oxidase activity;0.00358694355268811!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00358694355268811!GO:0004129;cytochrome-c oxidase activity;0.00358694355268811!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00358694355268811!GO:0006613;cotranslational protein targeting to membrane;0.00360649159402722!GO:0006695;cholesterol biosynthetic process;0.00380185044040715!GO:0055088;lipid homeostasis;0.00408439708539562!GO:0004576;oligosaccharyl transferase activity;0.00412394639059538!GO:0009165;nucleotide biosynthetic process;0.00423332179852541!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00444212180192014!GO:0044437;vacuolar part;0.00462945939933561!GO:0016568;chromatin modification;0.00482653685344162!GO:0005684;U2-dependent spliceosome;0.00495072652566278!GO:0005769;early endosome;0.00498549804708235!GO:0001558;regulation of cell growth;0.00519280411646216!GO:0005643;nuclear pore;0.00533593394112678!GO:0048471;perinuclear region of cytoplasm;0.00554499113207493!GO:0006778;porphyrin metabolic process;0.00558685295624823!GO:0033013;tetrapyrrole metabolic process;0.00558685295624823!GO:0030659;cytoplasmic vesicle membrane;0.00570166290010284!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0057135820573816!GO:0006974;response to DNA damage stimulus;0.00586576839257676!GO:0030145;manganese ion binding;0.00600370135610095!GO:0045792;negative regulation of cell size;0.00648113976843972!GO:0030308;negative regulation of cell growth;0.00650017963819705!GO:0046474;glycerophospholipid biosynthetic process;0.00662255982838728!GO:0000786;nucleosome;0.00671145793854866!GO:0030880;RNA polymerase complex;0.0067438536288345!GO:0007242;intracellular signaling cascade;0.00720504319509237!GO:0015980;energy derivation by oxidation of organic compounds;0.00745163968250884!GO:0051252;regulation of RNA metabolic process;0.00761050320460933!GO:0048487;beta-tubulin binding;0.00764255728991511!GO:0008026;ATP-dependent helicase activity;0.00806876779728552!GO:0051325;interphase;0.00825467587546955!GO:0017166;vinculin binding;0.00844693284148264!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00851869489188203!GO:0006740;NADPH regeneration;0.00861688270890273!GO:0006098;pentose-phosphate shunt;0.00861688270890273!GO:0016272;prefoldin complex;0.00877576444856883!GO:0005765;lysosomal membrane;0.00884439016936443!GO:0042168;heme metabolic process;0.00905153678505298!GO:0051101;regulation of DNA binding;0.00915924478209948!GO:0006458;'de novo' protein folding;0.00915924478209948!GO:0051084;'de novo' posttranslational protein folding;0.00915924478209948!GO:0005667;transcription factor complex;0.00930838086238556!GO:0046930;pore complex;0.00935443403060578!GO:0009892;negative regulation of metabolic process;0.00951757424230172!GO:0048037;cofactor binding;0.00955135131890272!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00960003965646283!GO:0006595;polyamine metabolic process;0.0096341352511401!GO:0050662;coenzyme binding;0.00999480438319013!GO:0046483;heterocycle metabolic process;0.0100341010648415!GO:0046822;regulation of nucleocytoplasmic transport;0.0100893025771901!GO:0006509;membrane protein ectodomain proteolysis;0.0104279156953831!GO:0033619;membrane protein proteolysis;0.0104279156953831!GO:0007040;lysosome organization and biogenesis;0.0104279156953831!GO:0006417;regulation of translation;0.0104411746044407!GO:0016859;cis-trans isomerase activity;0.0111304913473495!GO:0005149;interleukin-1 receptor binding;0.011288833445117!GO:0009719;response to endogenous stimulus;0.0116392486445756!GO:0048144;fibroblast proliferation;0.0117263098112158!GO:0048145;regulation of fibroblast proliferation;0.0117263098112158!GO:0006612;protein targeting to membrane;0.0121531722091251!GO:0004386;helicase activity;0.012764223745533!GO:0006260;DNA replication;0.0129392667633822!GO:0051098;regulation of binding;0.0133723433835987!GO:0008203;cholesterol metabolic process;0.0134401599617772!GO:0006779;porphyrin biosynthetic process;0.0137008341570138!GO:0033014;tetrapyrrole biosynthetic process;0.0137008341570138!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0143026204139819!GO:0000428;DNA-directed RNA polymerase complex;0.0143026204139819!GO:0008629;induction of apoptosis by intracellular signals;0.0146665928520409!GO:0040008;regulation of growth;0.0148257783262785!GO:0031529;ruffle organization and biogenesis;0.0150940651637559!GO:0030663;COPI coated vesicle membrane;0.0153684053218446!GO:0030126;COPI vesicle coat;0.0153684053218446!GO:0016197;endosome transport;0.0156668503892508!GO:0006007;glucose catabolic process;0.015980437944451!GO:0007033;vacuole organization and biogenesis;0.0161432606468986!GO:0007010;cytoskeleton organization and biogenesis;0.0162792190269045!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0163427576799945!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0170586469269732!GO:0030137;COPI-coated vesicle;0.0170868557204849!GO:0035035;histone acetyltransferase binding;0.0172153815814245!GO:0044427;chromosomal part;0.0172153815814245!GO:0006950;response to stress;0.0175162171834495!GO:0044433;cytoplasmic vesicle part;0.0181391093980107!GO:0001666;response to hypoxia;0.0184470074512658!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0187786114143399!GO:0051085;chaperone cofactor-dependent protein folding;0.0191990629760225!GO:0003724;RNA helicase activity;0.0192511463783951!GO:0007050;cell cycle arrest;0.0193210700935093!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0193613745876764!GO:0000082;G1/S transition of mitotic cell cycle;0.0200970749473753!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0200970749473753!GO:0000151;ubiquitin ligase complex;0.0200970749473753!GO:0006749;glutathione metabolic process;0.0200970749473753!GO:0031272;regulation of pseudopodium formation;0.0200970749473753!GO:0031269;pseudopodium formation;0.0200970749473753!GO:0031344;regulation of cell projection organization and biogenesis;0.0200970749473753!GO:0031268;pseudopodium organization and biogenesis;0.0200970749473753!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0200970749473753!GO:0031274;positive regulation of pseudopodium formation;0.0200970749473753!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0203546648527744!GO:0050178;phenylpyruvate tautomerase activity;0.0208156626149706!GO:0006783;heme biosynthetic process;0.0213548475093353!GO:0046489;phosphoinositide biosynthetic process;0.0213548475093353!GO:0006650;glycerophospholipid metabolic process;0.0218704706739946!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0218704706739946!GO:0030433;ER-associated protein catabolic process;0.0223139356760486!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0223139356760486!GO:0016485;protein processing;0.0225640808266012!GO:0048146;positive regulation of fibroblast proliferation;0.0230714112513719!GO:0006891;intra-Golgi vesicle-mediated transport;0.0247359514223952!GO:0003697;single-stranded DNA binding;0.0247865614432505!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.0251563891413561!GO:0046467;membrane lipid biosynthetic process;0.0251691558226489!GO:0008139;nuclear localization sequence binding;0.0259271564269514!GO:0031326;regulation of cellular biosynthetic process;0.0287162420642916!GO:0019318;hexose metabolic process;0.0287796805407183!GO:0009166;nucleotide catabolic process;0.028986013539824!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0294906513903951!GO:0010257;NADH dehydrogenase complex assembly;0.0294906513903951!GO:0033108;mitochondrial respiratory chain complex assembly;0.0294906513903951!GO:0032507;maintenance of cellular protein localization;0.0295818405927651!GO:0051716;cellular response to stimulus;0.0297957584972846!GO:0008033;tRNA processing;0.0297957584972846!GO:0031072;heat shock protein binding;0.0299378468027303!GO:0043281;regulation of caspase activity;0.0300128456452543!GO:0003746;translation elongation factor activity;0.0300191500138215!GO:0006739;NADP metabolic process;0.030430418950352!GO:0051287;NAD binding;0.0310065568458091!GO:0006520;amino acid metabolic process;0.0312946647776879!GO:0035258;steroid hormone receptor binding;0.0314600745149221!GO:0045936;negative regulation of phosphate metabolic process;0.0315670889140736!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0317928243676947!GO:0043154;negative regulation of caspase activity;0.0319538845389036!GO:0051881;regulation of mitochondrial membrane potential;0.0319538845389036!GO:0005856;cytoskeleton;0.031980265867701!GO:0009889;regulation of biosynthetic process;0.031980265867701!GO:0005996;monosaccharide metabolic process;0.0323750457566952!GO:0030833;regulation of actin filament polymerization;0.0325018530374603!GO:0003756;protein disulfide isomerase activity;0.0325018530374603!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0325018530374603!GO:0008213;protein amino acid alkylation;0.0325018530374603!GO:0006479;protein amino acid methylation;0.0325018530374603!GO:0030134;ER to Golgi transport vesicle;0.0327118226667211!GO:0007265;Ras protein signal transduction;0.0327243878369637!GO:0006790;sulfur metabolic process;0.0330345209092905!GO:0000049;tRNA binding;0.0346553702349304!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0351040200764664!GO:0006733;oxidoreduction coenzyme metabolic process;0.0351040200764664!GO:0030027;lamellipodium;0.0353493013584999!GO:0004680;casein kinase activity;0.0354287661530812!GO:0006897;endocytosis;0.0362873498519871!GO:0010324;membrane invagination;0.0362873498519871!GO:0008538;proteasome activator activity;0.0363471562375998!GO:0051235;maintenance of localization;0.037346668118501!GO:0005869;dynactin complex;0.037346668118501!GO:0046983;protein dimerization activity;0.037346668118501!GO:0045334;clathrin-coated endocytic vesicle;0.0377062841455587!GO:0015631;tubulin binding;0.0377062841455587!GO:0008186;RNA-dependent ATPase activity;0.0377062841455587!GO:0006633;fatty acid biosynthetic process;0.0382852446900021!GO:0009966;regulation of signal transduction;0.0384654870649204!GO:0033673;negative regulation of kinase activity;0.0384654870649204!GO:0006469;negative regulation of protein kinase activity;0.0384654870649204!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0384654870649204!GO:0005694;chromosome;0.0398176802689318!GO:0030127;COPII vesicle coat;0.0399621434706038!GO:0012507;ER to Golgi transport vesicle membrane;0.0399621434706038!GO:0033559;unsaturated fatty acid metabolic process;0.0399621434706038!GO:0006636;unsaturated fatty acid biosynthetic process;0.0399621434706038!GO:0016481;negative regulation of transcription;0.0399621434706038!GO:0006281;DNA repair;0.0399621434706038!GO:0042987;amyloid precursor protein catabolic process;0.0403935219386639!GO:0030041;actin filament polymerization;0.0407531162765679!GO:0046519;sphingoid metabolic process;0.0411628477126585!GO:0043566;structure-specific DNA binding;0.0412237931222164!GO:0005758;mitochondrial intermembrane space;0.0427840753931602!GO:0030128;clathrin coat of endocytic vesicle;0.0428257142686188!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0428257142686188!GO:0030122;AP-2 adaptor complex;0.0428257142686188!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.04285747136425!GO:0012510;trans-Golgi network transport vesicle membrane;0.04285747136425!GO:0007067;mitosis;0.0432156433815551!GO:0043022;ribosome binding;0.0438358845548816!GO:0046979;TAP2 binding;0.0440300169706094!GO:0046977;TAP binding;0.0440300169706094!GO:0046978;TAP1 binding;0.0440300169706094!GO:0046394;carboxylic acid biosynthetic process;0.0455158706755867!GO:0016053;organic acid biosynthetic process;0.0455158706755867!GO:0008426;protein kinase C inhibitor activity;0.0465765075873268!GO:0051651;maintenance of cellular localization;0.0467180623706693!GO:0006354;RNA elongation;0.0470409389217608!GO:0051272;positive regulation of cell motility;0.0471452192800283!GO:0040017;positive regulation of locomotion;0.0471452192800283!GO:0051540;metal cluster binding;0.0481596901796233!GO:0051536;iron-sulfur cluster binding;0.0481596901796233!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0483339089114499!GO:0005912;adherens junction;0.0483664858516935!GO:0016791;phosphoric monoester hydrolase activity;0.0485287905512869!GO:0008652;amino acid biosynthetic process;0.0485287905512869!GO:0043414;biopolymer methylation;0.0485287905512869!GO:0022415;viral reproductive process;0.0491133483489021!GO:0006643;membrane lipid metabolic process;0.049502017624553!GO:0030100;regulation of endocytosis;0.0497399114451773!GO:0000087;M phase of mitotic cell cycle;0.0497399114451773!GO:0006518;peptide metabolic process;0.0497399114451773
|sample_id=11600
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=bladder
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11600-120H7;search_select_hide=table117:FF:11600-120H7
}}
}}

Latest revision as of 18:11, 4 June 2020

Name:Urothelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12091
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebladder
dev stageNA
sexNA
ageNA
cell typeurothelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:4521
catalog numberSC4325
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005904
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12091 CAGE DRX008526 DRR009398
Accession ID Hg19

Library idBAMCTSS
CNhs12091 DRZ000823 DRZ002208
Accession ID Hg38

Library idBAMCTSS
CNhs12091 DRZ012173 DRZ013558
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005904
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.GGTAGC sRNA-Seq DRX037163 DRR041529
Accession ID Hg19

Library idBAMCTSS
SRhi10010.GGTAGC DRZ007171


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.362
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.429
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.095
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.456
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.137
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.258
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.782
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.311
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.252
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.104
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.64
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0599
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.429
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.429
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12091

Jaspar motifP-value
MA0002.20.0572
MA0003.10.351
MA0004.10.812
MA0006.10.316
MA0007.10.271
MA0009.10.389
MA0014.10.829
MA0017.10.0384
MA0018.20.00357
MA0019.10.665
MA0024.10.00276
MA0025.10.0619
MA0027.10.871
MA0028.10.00639
MA0029.10.0903
MA0030.10.154
MA0031.10.0648
MA0035.20.0993
MA0038.10.207
MA0039.20.341
MA0040.10.389
MA0041.10.3
MA0042.10.671
MA0043.10.00188
MA0046.10.201
MA0047.20.43
MA0048.10.77
MA0050.10.0179
MA0051.10.0496
MA0052.10.677
MA0055.10.63
MA0057.10.0915
MA0058.10.569
MA0059.10.452
MA0060.10.0315
MA0061.10.18
MA0062.28.10521e-5
MA0065.20.00172
MA0066.10.0102
MA0067.10.109
MA0068.10.00269
MA0069.10.948
MA0070.10.938
MA0071.10.667
MA0072.10.888
MA0073.10.638
MA0074.10.675
MA0076.19.89388e-4
MA0077.10.714
MA0078.10.291
MA0079.20.799
MA0080.20.0206
MA0081.10.0509
MA0083.10.402
MA0084.10.00585
MA0087.10.442
MA0088.10.694
MA0090.10.0634
MA0091.10.358
MA0092.10.241
MA0093.10.683
MA0099.21.37955e-6
MA0100.10.181
MA0101.10.87
MA0102.20.0413
MA0103.19.97051e-4
MA0104.20.787
MA0105.10.027
MA0106.12.30621e-5
MA0107.10.58
MA0108.20.0672
MA0111.10.629
MA0112.21.92183e-4
MA0113.10.435
MA0114.10.0558
MA0115.10.793
MA0116.10.0182
MA0117.10.493
MA0119.10.0318
MA0122.10.58
MA0124.10.398
MA0125.10.336
MA0131.10.0747
MA0135.10.979
MA0136.10.00333
MA0137.20.0246
MA0138.20.0233
MA0139.10.302
MA0140.10.327
MA0141.10.13
MA0142.10.103
MA0143.10.287
MA0144.10.932
MA0145.10.082
MA0146.10.121
MA0147.10.987
MA0148.10.135
MA0149.10.0281
MA0150.10.384
MA0152.10.0976
MA0153.10.0229
MA0154.10.0251
MA0155.10.206
MA0156.10.0314
MA0157.10.278
MA0159.10.0485
MA0160.10.154
MA0162.10.0693
MA0163.10.0339
MA0164.10.704
MA0258.10.00462
MA0259.10.672



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12091

Novel motifP-value
10.283
100.872
1000.744
1010.921
1020.591
1030.158
1040.399
1050.0732
1060.0109
1070.0187
1080.298
1090.0996
110.0807
1100.224
1110.154
1120.29
1130.464
1140.151
1150.719
1160.438
1170.476
1180.663
1190.0853
120.776
1200.0509
1210.409
1220.254
1230.317
1240.989
1250.408
1260.506
1270.0447
1280.0352
1290.0681
130.217
1300.869
1310.947
1320.195
1330.0264
1340.45
1350.0172
1360.692
1370.699
1380.439
1390.117
140.631
1400.0599
1410.396
1420.0379
1430.0612
1440.945
1450.119
1460.144
1470.143
1480.217
1490.145
150.223
1500.391
1510.179
1520.0661
1530.85
1540.834
1550.372
1560.0123
1570.538
1580.933
1590.671
160.172
1600.0555
1610.421
1620.291
1630.837
1640.822
1650.772
1660.863
1670.743
1680.443
1690.0298
170.0753
180.082
190.329
20.238
200.641
210.773
220.247
230.0592
240.291
250.979
260.186
270.177
280.924
290.502
30.258
300.315
310.36
320.293
330.542
340.457
350.698
360.238
370.301
380.235
390.274
40.351
400.0427
410.522
420.585
430.234
440.149
450.218
460.134
470.209
480.197
490.224
50.469
500.583
510.4
520.266
530.806
540.329
550.297
560.378
570.234
580.519
590.042
60.632
600.137
610.796
620.355
630.149
640.173
650.0449
660.731
670.36
680.706
690.142
70.499
700.00173
710.146
720.721
730.124
740.466
750.258
760.767
770.0359
780.123
790.118
80.0863
800.67
810.465
820.16
830.322
840.659
850.0567
860.833
870.55
880.204
890.018
90.528
900.917
910.0657
920.099
930.543
940.0823
950.245
960.481
970.91
980.152
990.115



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12091


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000244 (transitional epithelial cell)
0000731 (urothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0005910 (transitional epithelium)
0000479 (tissue)
0004119 (endoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000486 (multilaminar epithelium)
0010317 (germ layer / neural crest derived structure)
0000365 (urothelium)
0001008 (renal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000191 (human urothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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