FF:11618-122A7: Difference between revisions

Latest revision as of 18:12, 4 June 2020

Name:	Mesenchymal Stem Cells - hepatic, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12730
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	liver
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal stem cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2460
catalog number	SC7525
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004979

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12730		CAGE		DRX008356		DRR009228

Accession ID Hg19

Library id		BAM		CTSS
CNhs12730		DRZ000653		DRZ002038

Accession ID Hg38

Library id		BAM		CTSS
CNhs12730		DRZ012003		DRZ013388

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.00104
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0931
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.155
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.234
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0819
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0223
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.109
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.524
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0613
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.00992
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.109
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.306
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0144
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.137
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.498
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.109
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.00936
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.109
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0532
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0369
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.269
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.108
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.058
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.058
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.729
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.609
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.587
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.632
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.331
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12730

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0755
MA0003.1	MA0003.1	0.731
MA0004.1	MA0004.1	0.00504
MA0006.1	MA0006.1	0.89
MA0007.1	MA0007.1	0.0486
MA0009.1	MA0009.1	0.934
MA0014.1	MA0014.1	0.53
MA0017.1	MA0017.1	0.421
MA0018.2	MA0018.2	0.0102
MA0019.1	MA0019.1	0.378
MA0024.1	MA0024.1	2.97177e-4
MA0025.1	MA0025.1	0.0105
MA0027.1	MA0027.1	0.611
MA0028.1	MA0028.1	0.00319
MA0029.1	MA0029.1	0.329
MA0030.1	MA0030.1	0.998
MA0031.1	MA0031.1	0.456
MA0035.2	MA0035.2	0.633
MA0038.1	MA0038.1	0.865
MA0039.2	MA0039.2	0.0195
MA0040.1	MA0040.1	0.0168
MA0041.1	MA0041.1	0.662
MA0042.1	MA0042.1	0.284
MA0043.1	MA0043.1	0.294
MA0046.1	MA0046.1	0.514
MA0047.2	MA0047.2	0.95
MA0048.1	MA0048.1	0.148
MA0050.1	MA0050.1	0.00758
MA0051.1	MA0051.1	0.00609
MA0052.1	MA0052.1	0.219
MA0055.1	MA0055.1	0.909
MA0057.1	MA0057.1	0.89
MA0058.1	MA0058.1	4.85137e-4
MA0059.1	MA0059.1	0.0793
MA0060.1	MA0060.1	0.00365
MA0061.1	MA0061.1	0.0435
MA0062.2	MA0062.2	1.59895e-13
MA0065.2	MA0065.2	0.853
MA0066.1	MA0066.1	0.369
MA0067.1	MA0067.1	0.0961
MA0068.1	MA0068.1	0.269
MA0069.1	MA0069.1	0.2
MA0070.1	MA0070.1	0.438
MA0071.1	MA0071.1	0.428
MA0072.1	MA0072.1	0.717
MA0073.1	MA0073.1	0.233
MA0074.1	MA0074.1	0.483
MA0076.1	MA0076.1	1.24394e-6
MA0077.1	MA0077.1	0.217
MA0078.1	MA0078.1	0.835
MA0079.2	MA0079.2	0.197
MA0080.2	MA0080.2	6.22075e-10
MA0081.1	MA0081.1	0.00118
MA0083.1	MA0083.1	3.3023e-7
MA0084.1	MA0084.1	0.102
MA0087.1	MA0087.1	0.207
MA0088.1	MA0088.1	0.879
MA0090.1	MA0090.1	1.73366e-6
MA0091.1	MA0091.1	0.00485
MA0092.1	MA0092.1	0.0202
MA0093.1	MA0093.1	0.00824
MA0099.2	MA0099.2	6.76742e-5
MA0100.1	MA0100.1	0.472
MA0101.1	MA0101.1	0.00306
MA0102.2	MA0102.2	0.512
MA0103.1	MA0103.1	3.06149e-4
MA0104.2	MA0104.2	0.0217
MA0105.1	MA0105.1	0.36
MA0106.1	MA0106.1	0.976
MA0107.1	MA0107.1	0.0017
MA0108.2	MA0108.2	8.38459e-4
MA0111.1	MA0111.1	0.826
MA0112.2	MA0112.2	0.0264
MA0113.1	MA0113.1	0.0145
MA0114.1	MA0114.1	0.852
MA0115.1	MA0115.1	0.0257
MA0116.1	MA0116.1	0.234
MA0117.1	MA0117.1	0.975
MA0119.1	MA0119.1	8.37147e-4
MA0122.1	MA0122.1	0.546
MA0124.1	MA0124.1	0.495
MA0125.1	MA0125.1	0.721
MA0131.1	MA0131.1	0.652
MA0135.1	MA0135.1	0.0115
MA0136.1	MA0136.1	8.16308e-10
MA0137.2	MA0137.2	0.512
MA0138.2	MA0138.2	0.984
MA0139.1	MA0139.1	0.833
MA0140.1	MA0140.1	0.781
MA0141.1	MA0141.1	0.481
MA0142.1	MA0142.1	0.0218
MA0143.1	MA0143.1	0.469
MA0144.1	MA0144.1	0.979
MA0145.1	MA0145.1	0.0417
MA0146.1	MA0146.1	0.144
MA0147.1	MA0147.1	0.0377
MA0148.1	MA0148.1	0.411
MA0149.1	MA0149.1	0.577
MA0150.1	MA0150.1	0.199
MA0152.1	MA0152.1	0.0631
MA0153.1	MA0153.1	0.96
MA0154.1	MA0154.1	0.63
MA0155.1	MA0155.1	0.463
MA0156.1	MA0156.1	2.80454e-12
MA0157.1	MA0157.1	0.724
MA0159.1	MA0159.1	0.818
MA0160.1	MA0160.1	0.179
MA0162.1	MA0162.1	0.238
MA0163.1	MA0163.1	0.105
MA0164.1	MA0164.1	0.708
MA0258.1	MA0258.1	0.298
MA0259.1	MA0259.1	0.69

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12730

Novel motif	Logo	P-value
1	1	0.878
10	10	0.864
100	100	0.275
101	101	0.967
102	102	0.05
103	103	0.179
104	104	0.547
105	105	0.914
106	106	0.262
107	107	0.0899
108	108	0.962
109	109	0.45
11	11	0.777
110	110	0.959
111	111	0.618
112	112	0.895
113	113	0.109
114	114	0.438
115	115	0.264
116	116	0.19
117	117	0.474
118	118	0.535
119	119	0.878
12	12	0.326
120	120	0.674
121	121	0.243
122	122	0.0151
123	123	0.0353
124	124	0.644
125	125	0.118
126	126	0.844
127	127	0.709
128	128	0.302
129	129	0.255
13	13	0.534
130	130	0.11
131	131	0.204
132	132	0.218
133	133	0.454
134	134	0.32
135	135	0.574
136	136	0.844
137	137	0.143
138	138	0.29
139	139	0.287
14	14	0.419
140	140	0.161
141	141	0.371
142	142	0.411
143	143	0.713
144	144	0.383
145	145	0.768
146	146	0.873
147	147	0.123
148	148	0.871
149	149	3.84817e-4
15	15	0.267
150	150	0.405
151	151	0.647
152	152	0.126
153	153	0.472
154	154	0.69
155	155	0.207
156	156	0.26
157	157	0.292
158	158	0.967
159	159	0.161
16	16	0.0219
160	160	0.34
161	161	0.565
162	162	0.0951
163	163	0.0367
164	164	0.058
165	165	0.897
166	166	0.0811
167	167	0.258
168	168	0.637
169	169	0.0185
17	17	0.888
18	18	0.493
19	19	0.00388
2	2	0.249
20	20	0.622
21	21	0.167
22	22	0.0488
23	23	0.184
24	24	0.446
25	25	0.0595
26	26	0.815
27	27	0.825
28	28	0.0732
29	29	0.324
3	3	0.62
30	30	0.629
31	31	0.279
32	32	7.30905e-16
33	33	0.863
34	34	0.656
35	35	0.454
36	36	0.369
37	37	0.599
38	38	0.514
39	39	0.449
4	4	0.478
40	40	0.708
41	41	0.0197
42	42	0.546
43	43	0.557
44	44	0.956
45	45	0.863
46	46	0.547
47	47	0.827
48	48	0.761
49	49	0.348
5	5	0.468
50	50	0.349
51	51	0.4
52	52	0.955
53	53	0.123
54	54	0.857
55	55	0.727
56	56	0.879
57	57	0.855
58	58	0.468
59	59	0.667
6	6	0.973
60	60	0.854
61	61	0.821
62	62	0.814
63	63	0.439
64	64	0.738
65	65	0.394
66	66	0.355
67	67	0.404
68	68	0.77
69	69	0.139
7	7	0.526
70	70	0.642
71	71	0.194
72	72	0.883
73	73	0.363
74	74	0.552
75	75	0.95
76	76	0.538
77	77	0.141
78	78	0.809
79	79	0.0262
8	8	0.255
80	80	0.113
81	81	0.71
82	82	0.802
83	83	0.359
84	84	0.121
85	85	0.0175
86	86	0.722
87	87	0.0308
88	88	0.118
89	89	0.427
9	9	0.437
90	90	0.824
91	91	0.81
92	92	0.239
93	93	0.153
94	94	0.652
95	95	0.929
96	96	0.654
97	97	0.573
98	98	0.343
99	99	0.0214

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12730

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000098 human hepatic mesenchymal stem cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002195 (hepatic stem cell)
0002571 (hepatic mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000098 (human hepatic mesenchymal stem cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008248
+|DRA_sample_Accession=CAGE@SAMD00004979
-|accession_numbers=CAGE;DRX008356;DRR009228;DRZ000653;DRZ002038
+|accession_numbers=CAGE;DRX008356;DRR009228;DRZ000653;DRZ002038;DRZ012003;DRZ013388
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002195,CL:0002571
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.34!217.33!HAND2;;chr16:86544113..86544145,+!p1@FOXF1!2.02!128.11!FOXF1;;chr9:77112244..77112262,+!p1@RORB!1.93!93.94!RORB;;chr6:134210243..134210257,+!p1@TCF21!1.86!71.77!TCF21;;chr5:92918919..92918942,+!p1@NR2F1!1.74!229.48!NR2F1;;chr5:92919100..92919135,+!p3@NR2F1!1.59!45.75!NR2F1;;chr5:92918956..92918969,+!p4@NR2F1!1.58!40.03!NR2F1;;chr8:11561684..11561751,+!p1@GATA4!1.55!34.46!GATA4;;chr19:46801639..46801699,+!p1@HIF3A!1.54!33.89!HIF3A;;chr15:57511609..57511651,+!p2@TCF12!1.45!44.61!TCF12;;chr4:174451350..174451363,-!p3@HAND2!1.44!26.59!HAND2;;chr7:35293685..35293718,-!p1@TBX20!1.41!24.88!TBX20;;chr11:61520075..61520136,+!p1@C11orf9!1.36!45.90!C11orf9;;chr4:174450089..174450153,-!p2@HAND2!1.34!21.02!HAND2;;chr5:92919375..92919438,+!p6@NR2F1!1.33!22.02!NR2F1;;chr11:46299199..46299233,+!p1@CREB3L1!1.32!99.66!CREB3L1;;chr19:45971246..45971265,+!p1@FOSB!1.22!286.81!FOSB;;chr17:1959369..1959388,+!p2@HIC1!1.20!38.89!HIC1;;chr5:92919068..92919082,+!p5@NR2F1!1.19!17.30!NR2F1;;chr14:62162285..62162296,+!p3@HIF1A!1.17!72.06!HIF1A;;chr17:59477233..59477263,+!p1@TBX2!1.17!42.61!TBX2;;chr12:100867653..100867677,+!p2@NR1H4!1.16!13.58!NR1H4;;chr14:62162258..62162269,+!p2@HIF1A!1.12!117.38!HIF1A;;chr18:19749386..19749404,+!p2@GATA6!1.12!17.59!GATA6;;chr11:113930425..113930471,+!p1@ZBTB16!1.08!16.16!ZBTB16;;chr12:100867627..100867652,+!p1@NR1H4!1.07!10.72!NR1H4;;chr14:75745523..75745537,+!p1@FOS!1.03!1173.42!FOS;;chr18:19749541..19749557,+!p1@GATA6!1.02!30.31!GATA6;;chr15:83953397..83953425,-!p1@BNC1!1.01!10.58!BNC1;;chr12:100867736..100867750,+!p4@NR1H4!1.01!9.15!NR1H4;;chr5:92918894..92918912,+!p2@NR2F1!0.98!28.60!NR2F1;;chr5:134369905..134369972,-!p1@PITX1!0.98!13.15!PITX1;;chr9:73028814..73028895,-!p1@KLF9!0.97!84.36!KLF9;;chr2:66662281..66662308,+!p1@MEIS1!0.97!29.74!MEIS1;;chr3:126076242..126076257,-!p1@KLF15!0.96!10.29!KLF15;;chr12:100867777..100867788,+!p5@NR1H4!0.95!7.86!NR1H4;;chr3:69915385..69915438,+!p3@MITF!0.94!7.72!MITF;;chrX:106960285..106960299,-!p1@TSC22D3!0.93!211.04!TSC22D3;;chr20:48599506..48599526,+!p1@SNAI1!0.93!50.47!SNAI1;;chr17:59477197..59477212,+!p2@TBX2!0.93!13.30!TBX2;;chr15:96873984..96873999,+!p3@NR2F2!0.91!54.90!NR2F2;;chr7:19157248..19157268,-!p1@TWIST1!0.91!20.59!TWIST1;;chr3:141121847..141121868,+!p5@ZBTB38!0.91!11.15!ZBTB38;;chr6:1389789..1389821,+!p1@FOXF2!0.91!10.01!FOXF2;;chr9:73029219..73029289,-!p2@KLF9!0.90!21.73!KLF9;;chr8:48650715..48650735,-!p1@CEBPD!0.89!913.77!CEBPD;;chr7:149470641..149470694,-!p1@ZNF467!0.88!31.17!ZNF467;;chr17:59477275..59477286,+!p3@TBX2!0.88!8.86!TBX2;;chr5:137801160..137801176,+!p1@EGR1!0.87!675.57!EGR1;;chr2:66662249..66662267,+!p2@MEIS1!0.87!26.02!MEIS1;;chr5:137804484..137804498,+!p2@EGR1!0.86!26.16!EGR1;;chr13:37494365..37494381,-!p1@SMAD9!0.85!10.87!SMAD9;;chr17:46655704..46655718,-!p2@HOXB4!0.85!9.44!HOXB4;;chr5:92919312..92919334,+!p13@NR2F1!0.85!6.01!NR2F1;;chr12:52445218..52445237,+!p1@NR4A1!0.84!80.21!NR4A1;;chr14:74256787..74256858,-!p6@C14orf43!0.84!5.86!C14orf43;;chr3:126076264..126076305,-!p2@KLF15!0.83!8.15!KLF15;;chr17:46621937..46621966,-!p2@HOXB2!0.81!15.58!HOXB2;;chr17:46132044..46132080,+!p4@NFE2L1!0.81!5.43!NFE2L1;;chr5:92918860..92918871,+!p10@NR2F1!0.80!5.86!NR2F1;;chr7:27142290..27142310,-!p1@HOXA2!0.80!5.29!HOXA2;;chr17:46671108..46671147,-!p1@HOXB5!0.80!5.29!HOXB5;;chr20:42543441..42543497,+!p1@TOX2!0.79!25.16!TOX2;;chr5:92919452..92919496,+!p11@NR2F1!0.79!5.15!NR2F1;;chr9:73028786..73028797,-!p11@KLF9!0.79!5.15!KLF9;;chr11:46333934..46333963,+!p5@CREB3L1!0.78!5.00!CREB3L1;;chr8:106330656..106330684,+!p1@ZFPM2!0.77!13.73!ZFPM2;;chr11:113930401..113930422,+!p3@ZBTB16!0.77!4.86!ZBTB16;;chr15:96874012..96874042,+!p2@NR2F2!0.76!47.33!NR2F2;;chr1:59249688..59249703,-!p3@JUN!0.76!31.03!JUN;;chr2:121493425..121493474,+!p1@GLI2!0.76!11.15!GLI2;;chr1:164528616..164528660,+!p5@PBX1!0.76!10.29!PBX1;;chr15:96874145..96874166,+!p7@NR2F2!0.76!9.58!NR2F2;;chr7:149470540..149470596,-!p2@ZNF467!0.76!6.43!ZNF467;;chr2:66662396..66662407,+!p4@MEIS1!0.76!4.72!MEIS1;;chr14:62162224..62162254,+!p1@HIF1A!0.75!745.92!HIF1A;;chr16:8962202..8962222,-!p3@CARHSP1!0.75!8.58!CARHSP1;;chr2:121493492..121493537,+!p2@GLI2!0.75!8.01!GLI2;;chr11:46299539..46299620,+!p2@CREB3L1!0.74!8.01!CREB3L1;;chr15:96875041..96875052,+!p17@NR2F2!0.73!6.58!NR2F2;;chr12:57504975..57505019,-!p2@STAT6!0.72!19.02!STAT6;;chr2:239756671..239756732,+!p1@TWIST2!0.72!15.16!TWIST2;;chr7:19157043..19157088,-!p2@TWIST1!0.72!11.58!TWIST1;;chr10:63809106..63809127,+!p1@ARID5B!0.71!63.05!ARID5B;;chr14:75746722..75746777,+!p2@FOS!0.71!5.43!FOS;;chr3:141105705..141105770,+!p4@ZBTB38!0.71!5.15!ZBTB38;;chr17:46622070..46622109,-!p1@HOXB2!0.70!9.87!HOXB2;;chr5:134369879..134369898,-!p2@PITX1!0.70!4.00!PITX1;;chr5:92919194..92919204,+!p16@NR2F1!0.70!4.00!NR2F1;;chr19:46800289..46800327,+!p2@HIF3A!0.70!4.00!HIF3A;;chr15:42749722..42749739,-!p2@ZFP106!0.69!7.43!ZFP106;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.43!TCF4;;chr1:16452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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002571;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11618-122A7
 |is_a=EFO:0002091;;FF:0000098
 |is_obsolete=
 |library_id=CNhs12730
-|library_ids=CNhs12730
+|library_id_phase_based=2:CNhs12730
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11618
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11618
 |name=Mesenchymal Stem Cells - hepatic, donor2
 |namespace=FANTOM5
@@ Line 50: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12730,LSID960,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11618-122A7;search_select_hide=table117:FF:11618-122A7
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FF:11618-122A7: Difference between revisions

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Latest revision as of 18:12, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0