FF:11625-122B5: Difference between revisions

Latest revision as of 18:12, 4 June 2020

Name:	CD34+ Progenitors, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12205
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	hematopoietic stem cell, CD34+
cell line	NA
company	3HBiomedical
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	lot:c1
catalog number	3H100-60-5
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005630

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12205		CAGE		DRX008059		DRR008931

Accession ID Hg19

Library id		BAM		CTSS
CNhs12205		DRZ000356		DRZ001741

Accession ID Hg38

Library id		BAM		CTSS
CNhs12205		DRZ011706		DRZ013091

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.193
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0475
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.246
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.444
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.151
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.58
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.193
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.514
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.507
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.193
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.193
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.352
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.193
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.193
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.193
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.264
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.511
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.193
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.449
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.193
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.233
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.433
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.221
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.327
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.327
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.525
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.156
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.193
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.527
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.457
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.611
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.193
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.193
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.327
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.193
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.511
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.327
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.428
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0.193
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.193
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.193
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12205

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.47049e-8
MA0003.1	MA0003.1	0.779
MA0004.1	MA0004.1	0.686
MA0006.1	MA0006.1	0.263
MA0007.1	MA0007.1	0.23
MA0009.1	MA0009.1	0.149
MA0014.1	MA0014.1	0.682
MA0017.1	MA0017.1	0.992
MA0018.2	MA0018.2	5.02871e-8
MA0019.1	MA0019.1	0.652
MA0024.1	MA0024.1	0.365
MA0025.1	MA0025.1	1.24602e-5
MA0027.1	MA0027.1	0.288
MA0028.1	MA0028.1	0.449
MA0029.1	MA0029.1	0.757
MA0030.1	MA0030.1	0.0613
MA0031.1	MA0031.1	0.0281
MA0035.2	MA0035.2	0.126
MA0038.1	MA0038.1	0.605
MA0039.2	MA0039.2	0.517
MA0040.1	MA0040.1	0.45
MA0041.1	MA0041.1	0.0981
MA0042.1	MA0042.1	0.169
MA0043.1	MA0043.1	1.8446e-14
MA0046.1	MA0046.1	0.216
MA0047.2	MA0047.2	0.524
MA0048.1	MA0048.1	0.927
MA0050.1	MA0050.1	3.63388e-11
MA0051.1	MA0051.1	6.03131e-7
MA0052.1	MA0052.1	4.58402e-4
MA0055.1	MA0055.1	0.928
MA0057.1	MA0057.1	0.119
MA0058.1	MA0058.1	0.309
MA0059.1	MA0059.1	0.892
MA0060.1	MA0060.1	0.0416
MA0061.1	MA0061.1	1.32531e-47
MA0062.2	MA0062.2	1.95534e-9
MA0065.2	MA0065.2	0.39
MA0066.1	MA0066.1	0.64
MA0067.1	MA0067.1	3.60304e-8
MA0068.1	MA0068.1	0.0225
MA0069.1	MA0069.1	0.185
MA0070.1	MA0070.1	0.416
MA0071.1	MA0071.1	0.514
MA0072.1	MA0072.1	0.307
MA0073.1	MA0073.1	0.224
MA0074.1	MA0074.1	0.362
MA0076.1	MA0076.1	0.0676
MA0077.1	MA0077.1	0.305
MA0078.1	MA0078.1	0.432
MA0079.2	MA0079.2	0.646
MA0080.2	MA0080.2	5.70626e-13
MA0081.1	MA0081.1	1.43404e-4
MA0083.1	MA0083.1	0.517
MA0084.1	MA0084.1	0.467
MA0087.1	MA0087.1	0.934
MA0088.1	MA0088.1	0.224
MA0090.1	MA0090.1	0.0139
MA0091.1	MA0091.1	0.371
MA0092.1	MA0092.1	0.752
MA0093.1	MA0093.1	0.692
MA0099.2	MA0099.2	9.47244e-34
MA0100.1	MA0100.1	0.0994
MA0101.1	MA0101.1	1.04228e-46
MA0102.2	MA0102.2	7.0999e-10
MA0103.1	MA0103.1	0.0244
MA0104.2	MA0104.2	0.217
MA0105.1	MA0105.1	1.00664e-21
MA0106.1	MA0106.1	0.0417
MA0107.1	MA0107.1	1.32561e-51
MA0108.2	MA0108.2	0.624
MA0111.1	MA0111.1	0.798
MA0112.2	MA0112.2	0.955
MA0113.1	MA0113.1	0.382
MA0114.1	MA0114.1	0.471
MA0115.1	MA0115.1	0.248
MA0116.1	MA0116.1	0.0482
MA0117.1	MA0117.1	0.00111
MA0119.1	MA0119.1	0.258
MA0122.1	MA0122.1	0.538
MA0124.1	MA0124.1	0.237
MA0125.1	MA0125.1	0.231
MA0131.1	MA0131.1	0.789
MA0135.1	MA0135.1	0.486
MA0136.1	MA0136.1	2.99114e-18
MA0137.2	MA0137.2	0.0343
MA0138.2	MA0138.2	0.0347
MA0139.1	MA0139.1	0.513
MA0140.1	MA0140.1	0.057
MA0141.1	MA0141.1	0.792
MA0142.1	MA0142.1	0.712
MA0143.1	MA0143.1	0.798
MA0144.1	MA0144.1	0.179
MA0145.1	MA0145.1	0.164
MA0146.1	MA0146.1	0.658
MA0147.1	MA0147.1	0.481
MA0148.1	MA0148.1	0.601
MA0149.1	MA0149.1	0.861
MA0150.1	MA0150.1	4.59935e-13
MA0152.1	MA0152.1	0.239
MA0153.1	MA0153.1	0.0106
MA0154.1	MA0154.1	0.00325
MA0155.1	MA0155.1	0.816
MA0156.1	MA0156.1	3.48014e-18
MA0157.1	MA0157.1	0.0736
MA0159.1	MA0159.1	0.384
MA0160.1	MA0160.1	0.121
MA0162.1	MA0162.1	0.322
MA0163.1	MA0163.1	0.00484
MA0164.1	MA0164.1	0.955
MA0258.1	MA0258.1	0.854
MA0259.1	MA0259.1	0.881

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12205

Novel motif	Logo	P-value
1	1	0.841
10	10	0.127
100	100	0.173
101	101	0.953
102	102	0.951
103	103	0.563
104	104	0.434
105	105	0.0978
106	106	0.0123
107	107	0.564
108	108	0.232
109	109	0.698
11	11	0.657
110	110	0.936
111	111	0.759
112	112	0.946
113	113	0.213
114	114	0.908
115	115	0.162
116	116	0.213
117	117	0.0384
118	118	0.302
119	119	0.434
12	12	0.347
120	120	0.416
121	121	0.4
122	122	0.281
123	123	0.696
124	124	0.589
125	125	0.959
126	126	0.0668
127	127	0.781
128	128	0.389
129	129	0.556
13	13	0.185
130	130	0.8
131	131	0.442
132	132	0.0173
133	133	0.34
134	134	0.905
135	135	0.938
136	136	0.845
137	137	0.0158
138	138	0.73
139	139	0.227
14	14	0.528
140	140	0.589
141	141	0.545
142	142	0.17
143	143	0.0133
144	144	0.943
145	145	0.713
146	146	0.983
147	147	0.15
148	148	0.348
149	149	0.302
15	15	0.302
150	150	0.531
151	151	0.785
152	152	0.558
153	153	0.895
154	154	0.575
155	155	0.285
156	156	0.653
157	157	0.679
158	158	0.03
159	159	0.0995
16	16	0.659
160	160	0.337
161	161	0.625
162	162	0.00826
163	163	0.417
164	164	0.169
165	165	0.42
166	166	0.796
167	167	0.328
168	168	0.138
169	169	0.255
17	17	0.915
18	18	0.558
19	19	0.0838
2	2	0.209
20	20	0.211
21	21	0.685
22	22	0.785
23	23	0.48
24	24	0.723
25	25	0.267
26	26	0.676
27	27	0.387
28	28	0.261
29	29	0.161
3	3	0.73
30	30	0.263
31	31	0.761
32	32	4.80792e-4
33	33	0.283
34	34	0.785
35	35	0.169
36	36	0.208
37	37	0.152
38	38	0.91
39	39	0.779
4	4	0.895
40	40	0.65
41	41	0.0111
42	42	0.519
43	43	0.129
44	44	0.397
45	45	0.879
46	46	0.833
47	47	0.899
48	48	0.805
49	49	0.396
5	5	0.477
50	50	0.687
51	51	0.685
52	52	0.707
53	53	0.591
54	54	0.915
55	55	0.523
56	56	0.776
57	57	0.561
58	58	0.217
59	59	0.751
6	6	0.718
60	60	0.215
61	61	0.369
62	62	0.229
63	63	0.536
64	64	0.983
65	65	0.874
66	66	0.336
67	67	0.89
68	68	0.433
69	69	0.0946
7	7	0.353
70	70	0.617
71	71	0.26
72	72	0.193
73	73	0.43
74	74	0.0632
75	75	0.276
76	76	0.178
77	77	0.135
78	78	0.409
79	79	0.128
8	8	0.353
80	80	0.0132
81	81	0.919
82	82	0.647
83	83	0.00226
84	84	0.0657
85	85	0.71
86	86	0.0511
87	87	0.216
88	88	0.606
89	89	0.306
9	9	0.436
90	90	0.807
91	91	0.998
92	92	0.949
93	93	0.35
94	94	0.208
95	95	0.0897
96	96	0.886
97	97	0.943
98	98	0.312
99	99	5.93318e-6

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12205

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000026 human CD34-positive hematopoietic stem cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000034 (stem cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000021 (hematopoietic stem cell sample)
0000026 (human CD34-positive hematopoietic stem cell sample)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005630
+|accession_numbers=CAGE;DRX008059;DRR008931;DRZ000356;DRZ001741;DRZ011706;DRZ013091
 |ancestors_in_anatomy_facet=
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000034,CL:0000012
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000034
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000021,FF:0000026,FF:0000001
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.37!232.61!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.06!113.22!IRF8;;chr2:192015701..192015743,-!p1@STAT4!1.97!123.87!STAT4;;chr3:128212033..128212051,-!p1@GATA2!1.94!86.88!GATA2;;chr21:39870339..39870443,-!p1@ERG!1.92!81.27!ERG;;chr19:54041669..54041697,+!p2@ZNF331!1.81!63.90!ZNF331;;chr10:35484053..35484076,+!p1@CREM!1.79!147.97!CREM;;chr6:391743..391759,+!p1@IRF4!1.77!57.73!IRF4;;chr2:61108695..61108753,+!p1@REL!1.73!346.39!REL;;chr12:72056800..72056834,+!p1@THAP2!1.73!70.06!THAP2;;chr14:75988831..75988847,+!p2@BATF!1.73!52.69!BATF;;chr11:47400078..47400106,-!p1@SPI1!1.73!52.13!SPI1;;chr19:45971246..45971265,+!p1@FOSB!1.71!873.27!FOSB;;chr6:135502501..135502546,+!p1@MYB!1.71!60.53!MYB;;chr22:38597987..38598021,+!p2@MAFF!1.70!284.18!MAFF;;chr9:20382446..20382493,-!p4@MLLT3!1.70!48.76!MLLT3;;chr19:54058073..54058088,+!p1@ZNF331!1.69!47.64!ZNF331;;chr1:25256756..25256774,-!p1@RUNX3!1.68!86.32!RUNX3;;chr3:101546827..101546847,+!p2@NFKBIZ!1.68!65.02!NFKBIZ;;chr2:157189180..157189290,-!p1@NR4A2!1.67!225.88!NR4A2;;chr8:123793988..123794016,+!p1@ZHX2!1.67!78.47!ZHX2;;chr2:16080659..16080685,+!p1@MYCN!1.67!45.40!MYCN;;chr7:50344289..50344323,+!p1@IKZF1!1.59!37.55!IKZF1;;chr7:115670804..115670825,-!p1@TFEC!1.56!35.31!TFEC;;chr9:102584262..102584276,+!p1@NR4A3!1.54!73.43!NR4A3;;chr10:98591801..98591841,+!p3@LCOR!1.54!45.96!LCOR;;chr12:52431016..52431071,+!p4@NR4A1!1.54!39.24!NR4A1;;chr2:61108878..61108891,+!p5@REL!1.53!33.07!REL;;chr14:35873947..35873965,-!p1@NFKBIA!1.50!1858.65!NFKBIA;;chr2:97202480..97202499,+!p1@ARID5A!1.50!299.31!ARID5A;;chr2:145277640..145277771,-!p1@ZEB2!1.49!378.34!ZEB2;;chr19:36391434..36391450,-!p1@NFKBID!1.49!57.73!NFKBID;;chr4:103422499..103422632,+!p1@NFKB1!1.48!586.29!NFKB1;;chr10:104155480..104155534,+!p2@NFKB2!1.46!173.76!NFKB2;;chr12:52445218..52445237,+!p1@NR4A1!1.45!325.66!NR4A1;;chr10:104154246..104154347,+!p3@NFKB2!1.45!159.18!NFKB2;;chr2:61108808..61108821,+!p3@REL!1.44!33.63!REL;;chr6:144385698..144385742,-!p2@PLAGL1!1.43!31.39!PLAGL1;;chr19:13213511..13213545,-!p2@LYL1!1.43!28.03!LYL1;;chr7:104654690..104654704,+!p2@MLL5!1.42!49.89!MLL5;;chr11:47399947..47399961,-!p3@SPI1!1.42!25.22!SPI1;;chrY:21906594..21906622,-!p1@KDM5D!1.42!25.22!KDM5D;;chr17:38020392..38020477,-!p1@IKZF3!1.41!24.66!IKZF3;;chr2:192015677..192015691,-!p3@STAT4!1.41!24.66!STAT4;;chr20:50159198..50159299,-!p1@NFATC2!1.38!33.07!NFATC2;;chr5:131826457..131826514,-!p1@IRF1!1.37!837.40!IRF1;;chr12:57914286..57914304,-!p1@DDIT3!1.37!790.88!DDIT3;;chr6:44233252..44233296,-!p1@NFKBIE!1.37!215.80!NFKBIE;;chr19:45252008..45252024,+!p2@BCL3!1.36!70.62!BCL3;;chr6:15246200..15246214,+!p2@JARID2!1.36!59.97!JARID2;;chr9:102584241..102584261,+!p4@NR4A3!1.35!33.07!NR4A3;;chr17:38497662..38497713,+!p4@RARA!1.35!24.66!RARA;;chr13:41593425..41593480,-!p1@ELF1!1.34!128.92!ELF1;;chr9:3525727..3525828,-!p2@RFX3!1.34!52.69!RFX3;;chr9:102584159..102584174,+!p2@NR4A3!1.33!35.87!NR4A3;;chr3:170075436..170075520,+!p1@SKIL!1.32!413.09!SKIL;;chr8:81397846..81397860,+!p3@ZBTB10!1.32!24.66!ZBTB10;;chr7:104654718..104654741,+!p3@MLL5!1.31!28.03!MLL5;;chr4:57522513..57522548,-!p4@HOPX!1.31!19.62!HOPX;;chr3:18486354..18486377,-!p2@SATB1!1.29!22.98!SATB1;;chr11:47399996..47400014,-!p4@SPI1!1.29!18.50!SPI1;;chrX:84499081..84499115,+!p2@ZNF711!1.28!26.34!ZNF711;;chr10:35484090..35484104,+!p6@CREM!1.28!17.94!CREM;;chr21:36421535..36421610,-!p2@RUNX1!1.26!60.53!RUNX1;;chr7:27192185..27192209,-!p1@HOXA3!1.26!17.38!HOXA3;;chr19:45504688..45504782,+!p1@RELB!1.25!100.89!RELB;;chr12:72056773..72056796,+!p3@THAP2!1.25!21.86!THAP2;;chr19:54041645..54041661,+!p5@ZNF331!1.25!16.82!ZNF331;;chr10:94449703..94449718,+!p1@HHEX!1.24!62.78!HHEX;;chr5:142782823..142782854,-!p3@NR3C1!1.24!23.54!NR3C1;;chrX:48644984..48645005,+!p1@GATA1!1.24!16.25!GATA1;;chr11:47400062..47400077,-!p2@SPI1!1.24!16.25!SPI1;;chr1:157108130..157108173,-!p1@ETV3!1.22!110.98!ETV3;;chr2:208394817..208394834,+!p3@CREB1!1.22!61.66!CREB1;;chr18:77155922..77155939,+!p1@NFATC1!1.22!42.04!NFATC1;;chr14:35872962..35873025,-!p3@NFKBIA!1.22!38.68!NFKBIA;;chr8:81397820..81397836,+!p2@ZBTB10!1.22!19.62!ZBTB10;;chr7:50344251..50344288,+!p3@IKZF1!1.22!15.69!IKZF1;;chr15:60884706..60884743,-!p1@RORA!1.21!78.47!RORA;;chr6:106546808..106546833,+!p3@PRDM1!1.21!19.06!PRDM1;;chr2:100759010..100759035,-!p1@AFF3!1.21!15.13!AFF3;;chr12:11802753..11802834,+!p2@ETV6!1.19!70.62!ETV6;;chr2:16081912..16081931,+!p2@MYCN!1.19!14.57!MYCN;;chr2:231090433..231090469,+!p1@SP140!1.19!14.57!SP140;;chr2:70142232..70142251,+!p1@MXD1!1.18!79.59!MXD1;;chr17:45810594..45810608,+!p1@TBX21!1.18!14.01!TBX21;;chr17:40440481..40440550,+!p1@STAT5A!1.17!98.65!STAT5A;;chr6:91006518..91006570,-!p1@BACH2!1.17!31.39!BACH2;;chr2:61108771..61108789,+!p4@REL!1.17!20.74!REL;;chr10:8096772..8096787,+!p2@GATA3!1.17!16.25!GATA3;;chr16:31885093..31885165,+!p1@ZNF267!1.16!201.22!ZNF267;;chr3:71355163..71355209,-!p5@FOXP1!1.16!18.50!FOXP1;;chrX:84498989..84499003,+!p1@ZNF711!1.16!18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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000037;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000837
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor2.CNhs12205.11625-122B5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor2.CNhs12205.11625-122B5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor2.CNhs12205.11625-122B5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor2.CNhs12205.11625-122B5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor2.CNhs12205.11625-122B5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11625-122B5
 |is_a=EFO:0002091;;FF:0000026
 |is_obsolete=
+|library_id=CNhs12205
+|library_id_phase_based=2:CNhs12205
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11625
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11625
 |name=CD34+ Progenitors, donor2
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12205,LSID976,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=122
 |rna_catalog_number=3H100-60-5
@@ Line 59: / Line 78: @@
 |rna_weight_ug=0.5
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 80: / Line 100: @@
 |top_motifs=NFKB1_REL_RELA:3.49165616177;PAX3,7:3.34469960627;CREB1:2.81906102002;ATF4:2.81665042692;RUNX1..3:2.76665306001;PAX2:2.75137371255;ATF5_CREB3:2.58296618572;RORA:2.2722722791;FOXN1:2.18328780784;TGIF1:2.17296603564;DMAP1_NCOR{1,2}_SMARC:2.15560826902;ELF1,2,4:2.14572103122;ETS1,2:2.11221567456;SPI1:2.01685703535;JUN:2.00466441719;NFATC1..3:1.99093247999;SPIB:1.95986295872;FOS_FOS{B,L1}_JUN{B,D}:1.92866781929;NFE2:1.88296239433;FOSL2:1.85091555394;FOX{D1,D2}:1.82145536057;NANOG{mouse}:1.81807959481;IRF1,2:1.78002787728;HIF1A:1.72881164524;BACH2:1.72518185725;NFIL3:1.7216495131;ATF2:1.50907437316;TLX2:1.50575586197;IRF7:1.40489207137;NKX2-1,4:1.38643233409;STAT1,3:1.3475456465;TBX4,5:1.31209365948;STAT2,4,6:1.31093456241;GATA6:1.28816136801;HLF:1.22801660751;HMX1:1.17781003352;MYB:1.16588463726;RFX2..5_RFXANK_RFXAP:1.15174894266;ATF6:1.15053661588;BPTF:1.10314914179;FOXP3:1.06384510416;POU2F1..3:0.943285021988;NFE2L1:0.902920835499;XBP1:0.854728244075;FOXO1,3,4:0.84535645322;RXRA_VDR{dimer}:0.829630461141;BREu{core}:0.795206422142;CEBPA,B_DDIT3:0.791637491906;PAX6:0.745258766837;HSF1,2:0.732547416578;MAFB:0.726896074185;PAX8:0.673322778604;SREBF1,2:0.634415558193;NFE2L2:0.623302772104;PDX1:0.554060180149;FOX{F1,F2,J1}:0.528256354908;TBP:0.497270407865;RBPJ:0.47432762822;EGR1..3:0.442574875329;SOX2:0.435303571041;NANOG:0.396740150035;HBP1_HMGB_SSRP1_UBTF:0.302595791788;MEF2{A,B,C,D}:0.299420424042;CRX:0.29258661173;SMAD1..7,9:0.185072468566;ESR1:0.183003526826;RFX1:0.16641628531;EP300:0.143753058202;GLI1..3:0.126441266798;HMGA1,2:0.102142430331;MYOD1:0.0868258567633;CDX1,2,4:0.0105248013416;OCT4_SOX2{dimer}:0.00680064697922;PRRX1,2:-0.0672617407575;AHR_ARNT_ARNT2:-0.149852794751;POU5F1:-0.173545516196;ELK1,4_GABP{A,B1}:-0.181639300743;FOX{I1,J2}:-0.184680356275;HES1:-0.189309971875;E2F1..5:-0.19689142125;CUX2:-0.210361593802;PAX4:-0.21834674568;DBP:-0.234366540763;STAT5{A,B}:-0.261001643105;NHLH1,2:-0.265910149556;ZEB1:-0.289831303523;PBX1:-0.293485016236;MED-1{core}:-0.293543908498;FOXP1:-0.29833478636;NFY{A,B,C}:-0.336276389606;RXR{A,B,G}:-0.341497771736;SRF:-0.357062468886;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.363151603538;MZF1:-0.363693696937;IKZF2:-0.396781787382;TFAP2{A,C}:-0.407412379545;MYFfamily:-0.413448847604;PATZ1:-0.427783009333;LEF1_TCF7_TCF7L1,2:-0.433150381986;TFDP1:-0.435413770534;TFAP2B:-0.462048695273;ZNF148:-0.494399680203;REST:-0.527036584732;SOX17:-0.535280294041;ZFP161:-0.542641428546;ZNF238:-0.546947080808;MTE{core}:-0.571061023604;NR5A1,2:-0.572729626167;ALX1:-0.59643407118;SOX{8,9,10}:-0.605310181938;VSX1,2:-0.651241995776;ZBTB16:-0.654321922465;HOXA9_MEIS1:-0.672905552637;EN1,2:-0.728644633336;HNF1A:-0.728727998639;YY1:-0.743436979902;HNF4A_NR2F1,2:-0.75459561026;MAZ:-0.780681218848;SP1:-0.826078931664;PITX1..3:-0.857371975813;PAX5:-0.869802538696;GCM1,2:-0.891601158341;GZF1:-0.892102420364;TAL1_TCF{3,4,12}:-0.896885071242;HIC1:-0.898661271577;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.899461129746;FOXA2:-0.921707575955;FOXL1:-0.922008037494;SNAI1..3:-0.944907203393;TFCP2:-0.962865201187;T:-0.965743937949;ZNF384:-0.966323803754;bHLH_family:-1.00683632569;NKX6-1,2:-1.0148297261;AR:-1.01903570145;LMO2:-1.0445528443;EBF1:-1.04541785169;TFAP4:-1.04931068497;SOX5:-1.07611251212;RREB1:-1.09412518794;AIRE:-1.11374600644;NRF1:-1.11375154998;NKX2-3_NKX2-5:-1.12268118642;ZBTB6:-1.14003538387;NR6A1:-1.15050216172;MTF1:-1.15539354511;MYBL2:-1.19035013816;ESRRA:-1.20838947721;TLX1..3_NFIC{dimer}:-1.21302961966;ALX4:-1.22480495873;XCPE1{core}:-1.24572360812;GTF2I:-1.25435686519;HOX{A6,A7,B6,B7}:-1.26610069748;ZNF423:-1.27483857303;ADNP_IRX_SIX_ZHX:-1.31807173342;POU3F1..4:-1.32089240184;NKX3-1:-1.32966692266;GFI1:-1.33379345346;FOXQ1:-1.35988452021;GTF2A1,2:-1.4066379937;HOX{A5,B5}:-1.42955265485;ZNF143:-1.43238421041;PRDM1:-1.44643090243;GATA4:-1.47248455439;NR1H4:-1.47594259259;TEAD1:-1.48620246414;NFIX:-1.50159775874;PPARG:-1.53773966936;TP53:-1.55323922612;POU6F1:-1.57692433898;HAND1,2:-1.58007683472;ZIC1..3:-1.58189836732;CDC5L:-1.62445730582;FOXM1:-1.63070153157;EVI1:-1.64545990056;LHX3,4:-1.65033562787;NKX2-2,8:-1.72228347239;HOX{A4,D4}:-1.81094382754;TEF:-1.93092728007;IKZF1:-1.93098612306;GFI1B:-1.96404196734;ARID5B:-2.03811815614;PAX1,9:-2.03843470537;NR3C1:-2.21048510634;UFEwm:-2.40079665738;FOXD3:-2.43349292034;SPZ1:-2.47064153068;KLF4:-2.4948016436;TOPORS:-2.54316794039;POU1F1:-2.57563564231;ONECUT1,2:-2.59755040827;NKX3-2:-2.61779291549
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11625-122B5;search_select_hide=table117:FF:11625-122B5
 }}

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FF:11625-122B5: Difference between revisions

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Latest revision as of 18:12, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0