FF:11748-123G2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005273 | ||
|accession_numbers=CAGE;DRX008546;DRR009418;DRZ000843;DRZ002228 | |accession_numbers=CAGE;DRX008546;DRR009418;DRZ000843;DRZ002228;DRZ012193;DRZ013578 | ||
|ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002570 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002570 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.76!56.79!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.70!55.62!PRRX1;;chr8:72756637..72756664,-!p3@MSC!1.56!39.96!MSC;;chr11:46299199..46299233,+!p1@CREB3L1!1.55!169.21!CREB3L1;;chr19:45971246..45971265,+!p1@FOSB!1.53!575.64!FOSB;;chr8:72756267..72756296,-!p4@MSC!1.48!42.07!MSC;;chr1:170633348..170633399,+!p2@PRRX1!1.47!38.10!PRRX1;;chr21:36260773..36260804,-!p7@RUNX1!1.44!35.76!RUNX1;;chr1:170633262..170633285,+!p3@PRRX1!1.39!26.88!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.34!54.22!HIC1;;chr8:72756667..72756736,-!p2@MSC!1.34!32.02!MSC;;chr7:44143978..44143989,+!p2@AEBP1!1.24!30.15!AEBP1;;chr7:44143925..44143970,+!p1@AEBP1!1.23!344.96!AEBP1;;chr12:54402745..54402788,+!p1@HOXC8!1.23!15.89!HOXC8;;chr8:72756063..72756125,-!p1@MSC!1.15!26.88!MSC;;chr8:72756213..72756243,-!p5@MSC!1.15!17.06!MSC;;chr20:50179368..50179392,-!p2@NFATC2!1.14!16.59!NFATC2;;chr17:46132044..46132080,+!p4@NFE2L1!1.14!12.85!NFE2L1;;chr8:72756380..72756427,-!p8@MSC!1.13!12.62!MSC;;chr12:54393880..54393962,+!p1@HOXC9!1.13!12.39!HOXC9;;chr1:119530493..119530572,-!p1@TBX15!1.11!11.92!TBX15;;chr8:25902876..25902936,-!p1@EBF2!1.10!11.45!EBF2;;chr1:158979872..158979898,+!p3@IFI16!1.09!34.82!IFI16;;chr16:54320617..54320643,-!p3@IRX3!1.09!14.72!IRX3;;chr8:49833948..49833973,-!p2@SNAI2!1.08!71.05!SNAI2;;chr7:19157248..19157268,-!p1@TWIST1!1.06!29.21!TWIST1;;chr19:54058073..54058088,+!p1@ZNF331!1.06!10.52!ZNF331;;chr1:170632723..170632739,+!p8@PRRX1!1.06!10.52!PRRX1;;chr19:50432453..50432468,+!p1@ATF5!1.05!578.67!ATF5;;chr16:54320646..54320672,-!p2@IRX3!1.05!15.66!IRX3;;chr14:24837368..24837401,+!p1@NFATC4!1.04!23.84!NFATC4;;chr15:57511609..57511651,+!p2@TCF12!1.04!17.06!TCF12;;chr8:49833978..49833996,-!p1@SNAI2!1.03!200.76!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!1.03!32.02!TWIST2;;chr14:75745523..75745537,+!p1@FOS!1.01!1114.58!FOS;;chr2:119604456..119604501,-!p2@EN1!0.99!8.88!EN1;;chr17:1958388..1958404,+!p1@HIC1!0.97!54.22!HIC1;;chr2:176994408..176994492,+!p1@HOXD8!0.97!8.41!HOXD8;;chr1:170632959..170632987,+!p4@PRRX1!0.96!8.88!PRRX1;;chr10:64576105..64576133,-!p1@EGR2!0.95!16.59!EGR2;;chr19:13134772..13134822,+!p2@NFIX!0.95!11.69!NFIX;;chr10:31610110..31610159,+!p2@ZEB1!0.94!7.71!ZEB1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.94!7.71!HOXC5;;chr1:170632137..170632172,+!p10@PRRX1!0.94!7.71!PRRX1;;chr7:44143997..44144008,+!p3@AEBP1!0.93!9.58!AEBP1;;chr7:27205136..27205164,-!p1@HOXA9!0.93!7.48!HOXA9;;chr11:46299539..46299620,+!p2@CREB3L1!0.92!12.62!CREB3L1;;chr2:239756739..239756755,+!p2@TWIST2!0.90!12.15!TWIST2;;chr19:50435736..50435781,+!p3@ATF5!0.90!9.82!ATF5;;chr10:131762504..131762555,-!p1@EBF3!0.90!7.01!EBF3;;chr7:27192185..27192209,-!p1@HOXA3!0.90!7.01!HOXA3;;chr5:137804484..137804498,+!p2@EGR1!0.89!28.75!EGR1;;chr12:54380036..54380091,+!p4@HOXC10!0.89!6.78!HOXC10;;chr12:52445218..52445237,+!p1@NR4A1!0.87!85.07!NR4A1;;chr6:45296048..45296082,+!p1@RUNX2!0.87!7.48!RUNX2;;chr10:63809106..63809127,+!p1@ARID5B!0.85!86.71!ARID5B;;chr16:54320675..54320715,-!p1@IRX3!0.84!13.32!IRX3;;chr15:96874145..96874166,+!p7@NR2F2!0.84!11.92!NR2F2;;chr16:54320101..54320125,-!p4@IRX3!0.84!8.65!IRX3;;chr14:75746722..75746777,+!p2@FOS!0.84!7.71!FOS;;chr10:119303078..119303169,+!p2@EMX2!0.84!5.84!EMX2;;chr9:110252035..110252057,-!p1@KLF4!0.82!96.06!KLF4;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.41!IRX5;;chr1:170632250..170632277,+!p7@PRRX1!0.82!5.61!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!0.81!7.25!PRRX2;;chr14:62162285..62162296,+!p3@HIF1A!0.80!29.92!HIF1A;;chr12:54394309..54394336,+!p2@HOXC9!0.80!5.38!HOXC9;;chr5:2751762..2751784,-!p1@IRX2!0.80!5.38!IRX2;;chr1:170632115..170632136,+!p9@PRRX1!0.80!5.38!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!0.80!5.38!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!0.79!9.82!ZFP106;;chr16:31076332..31076388,-!p3@ZNF668!0.79!5.14!ZNF668;;chr7:27205106..27205134,-!p2@HOXA9!0.79!5.14!HOXA9;;chr1:200379104..200379128,-!p2@ZNF281!0.78!13.09!ZNF281;;chr9:102584262..102584276,+!p1@NR4A3!0.78!11.92!NR4A3;;chr9:16870659..16870675,-!p2@BNC2!0.78!6.31!BNC2;;chr14:62162258..62162269,+!p2@HIF1A!0.77!51.42!HIF1A;;chr2:19558373..19558392,-!p1@OSR1!0.77!14.26!OSR1;;chr4:111558135..111558198,-!p2@PITX2!0.77!4.91!PITX2;;chr12:54402790..54402805,+!p2@HOXC8!0.77!4.91!HOXC8;;chr1:170632477..170632506,+!p6@PRRX1!0.77!4.91!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.77!4.91!PRRX1;;chr3:193853927..193853944,+!p1@HES1!0.75!167.57!HES1;;chr9:102584159..102584174,+!p2@NR4A3!0.75!8.88!NR4A3;;chr14:95236440..95236465,-!p1@GSC!0.75!4.67!GSC;;chr7:19157043..19157088,-!p2@TWIST1!0.74!12.15!TWIST1;;chr8:72756194..72756208,-!p9@MSC!0.74!4.44!MSC;;chr18:19749541..19749557,+!p1@GATA6!0.73!14.96!GATA6;;chr9:16870710..16870763,-!p1@BNC2!0.73!7.95!BNC2;;chr21:36260343..36260402,-!p6@RUNX1!0.73!7.48!RUNX1;;chr3:141121847..141121868,+!p5@ZBTB38!0.73!7.01!ZBTB38;;chr16:54320158..54320200,-!p5@IRX3!0.73!6.54!IRX3;;chr17:46687959..46688007,-!p2@HOXB7!0.73!6.31!HOXB7;;chr11:120107344..120107351,+!p1@POU2F3!0.73!5.38!POU2F3;;chr18:19749386..19749404,+!p2@GATA6!0.72!6.31!GATA6;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.21!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.72!4.21!PRRX1;;chr3:71630980..71631110,-!p3@FOXP1!0.71!15.89!FOXP1;;chr3:5021268..5021282,+!p4@BHLHE40!0.71!9.11!BHLHE40;;chr8:99956662..99956684,+!p1@OSR2!0.71!6.78!OSR2;;chr17:46675420..46675465,-!p3@HOXB6!0.71!4.91!HOXB6;;chr12:54378923..54378966,+!p1@HOXC10!0.70!3.97!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.70!3.97!HOXC8;;chr12:57853634..57853662,+!p2@GLI1!0.70!3.97!GLI1;;chr8:72755987..72756002,-!p7@MSC!0.70!3.97!MSC;;chr4:174451370..174451387,-!p1@HAND2!0.70!3.97!HAND2;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.44!TCF4;;chr5:137801160..137801176,+!p1@EGR1!0.68!437.28!EGR1;;chr14:75894714..75894733,+!p1@JDP2!0.68!123.63!JDP2;;chr12:72056800..72056834,+!p1@THAP2!0.68!5.38!THAP2;;chr11:46333934..46333963,+!p5@CREB3L1!0.68!3.74!CREB3L1;;chr12:10870927..10870966,-!p5@CSDA!0.68!3.74!CSDA;;chr12:54422217..54422239,+!p3@HOXC6!0.68!3.74!HOXC6;;chr4:174450089..174450153,-!p2@HAND2!0.68!3.74!HAND2;;chr1:170633245..170633256,+!p14@PRRX1!0.68!3.74!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!0.68!3.74!PRRX2;;chr16:54320322..54320343,-!p7@IRX3!0.68!3.74!IRX3;;chr8:93074803..93074845,-!p1@RUNX1T1!0.68!3.74!RUNX1T1;;chr1:158979792..158979814,+!p2@IFI16!0.67!40.67!IFI16;;chr8:22550982..22550999,-!p1@EGR3!0.67!11.69!EGR3;;chr7:113726357..113726443,+!p1@FOXP2!0.67!6.78!FOXP2;;chr17:46688334..46688385,-!p1@HOXB7!0.67!5.61!HOXB7;;chr19:33865009..33865090,+!p3@CEBPG!0.67!5.14!CEBPG;;chr7:28448965..28448994,+!p2@CREB5!0.66!14.26!CREB5;;chr15:96874244..96874259,+!p5@NR2F2!0.66!9.58!NR2F2;;chr1:221052776..221052799,+!p1@HLX!0.66!7.01!HLX;;chr15:96874927..96874938,+!p8@NR2F2!0.65!8.18!NR2F2;;chr21:36260295..36260310,-!p3@RUNX1!0.65!6.08!RUNX1;;chr2:102091144..102091183,-!p2@RFX8!0.65!3.51!RFX8;;chr7:27224842..27224872,-!p1@HOXA11!0.65!3.51!HOXA11;;chr10:31608127..31608156,+!p1@ZEB1!0.64!73.39!ZEB1;;chr4:4861385..4861398,+!p1@MSX1!0.64!11.45!MSX1;;chr18:77155922..77155939,+!p1@NFATC1!0.64!10.28!NFATC1;;chr3:12329397..12329433,+!p2@PPARG!0.64!8.65!PPARG;;chr2:121493492..121493537,+!p2@GLI2!0.64!6.08!GLI2;;chr3:71114066..71114114,-!p1@FOXP1!0.63!78.29!FOXP1;;chr12:48298765..48298783,-!p2@VDR!0.63!7.48!VDR;;chr17:38256799..38256815,-!p3@NR1D1!0.63!6.54!NR1D1;;chr17:46682321..46682362,-!p1@HOXB6!0.63!3.27!HOXB6;;chr1:170632762..170632786,+!p13@PRRX1!0.63!3.27!PRRX1;;chr7:27183114..27183138,-!p3@HOXA5!0.63!3.27!HOXA5;;chr8:72756251..72756262,-!p12@MSC!0.63!3.27!MSC;;chr2:102091566..102091581,-!p1@RFX8!0.63!3.27!RFX8;;chr10:114710244..114710257,+!p3@TCF7L2!0.62!9.82!TCF7L2;;chr2:157189180..157189290,-!p1@NR4A2!0.61!18.93!NR4A2;;chr2:121493425..121493474,+!p1@GLI2!0.61!7.71!GLI2;;chr17:46622114..46622138,-!p4@HOXB2!0.61!5.14!HOXB2;;chr19:31840130..31840160,-!p2@TSHZ3!0.61!5.14!TSHZ3;;chr1:170632647..170632659,+!p17@PRRX1!0.61!3.04!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.61!3.04!PRRX1;;chr12:54394059..54394088,+!p3@HOXC9!0.61!3.04!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.61!3.04!HOXC5;;chr12:57914286..57914304,-!p1@DDIT3!0.60!130.88!DDIT3;;chr21:36260463..36260480,-!p9@RUNX1!0.60!4.21!RUNX1;;chr1:59249688..59249703,-!p3@JUN!0.59!21.03!JUN;;chr18:22932080..22932170,-!p1@ZNF521!0.59!14.49!ZNF521;;chr7:150945754..150945789,-!p2@SMARCD3!0.59!10.52!SMARCD3;;chr15:96869255..96869291,+!p6@NR2F2!0.59!5.84!NR2F2;;chr17:20492136..20492165,+!p1@MEIS3P2!0.59!4.91!MEIS3P2;;chr9:110250697..110250738,-!p2@KLF4!0.59!3.51!KLF4;;chr1:212782094..212782109,+!p1@ATF3!0.58!93.95!ATF3;;chr15:96874012..96874042,+!p2@NR2F2!0.58!31.08!NR2F2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.58!18.93!ZNF10;;chr1:158979851..158979865,+!p5@IFI16!0.58!7.01!IFI16;;chr1:211433417..211433428,+!p17@RCOR3!0.58!2.80!RCOR3;;chr17:46659728..46659749,-!p3@HOXB3!0.58!2.80!HOXB3;;chr3:141087454..141087465,+!p19@ZBTB38!0.58!2.80!ZBTB38;;chr7:1577899..1577943,+!p3@MAFK!0.58!2.80!MAFK;;chr8:77593750..77593757,+!p3@ZFHX4!0.58!2.80!ZFHX4;;chr10:119302645..119302712,+!p3@EMX2!0.58!2.80!EMX2;;chr17:46621937..46621966,-!p2@HOXB2!0.57!8.65!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.57!7.01!HOXB2;;chr18:3449821..3449860,+!p7@TGIF1!0.57!5.61!TGIF1;;chr15:96874216..96874236,+!p13@NR2F2!0.57!4.67!NR2F2;;chr3:170076314..170076334,+!p2@SKIL!0.57!3.74!SKIL;;chr20:42543441..42543497,+!p1@TOX2!0.56!14.26!TOX2;;chr21:36259445..36259519,-!p4@RUNX1!0.56!8.65!RUNX1;;chr12:80085061..80085119,-!p6@PAWR!0.56!4.67!PAWR;;chr3:114343768..114343822,-!p1@ZBTB20!0.55!13.56!ZBTB20;;chr2:74229812..74229867,+!p1@TET3!0.55!7.48!TET3;;chr10:63809134..63809145,+!p6@ARID5B!0.55!6.78!ARID5B;;chr6:85474299..85474324,-!p1@TBX18!0.55!5.14!TBX18;;chr7:137686763..137686784,-!p5@CREB3L2!0.55!4.91!CREB3L2;;chr19:47922750..47922795,-!p1@MEIS3!0.55!4.67!MEIS3;;chr15:96876966..96877017,+!p12@NR2F2!0.55!3.97!NR2F2;;chr3:141105705..141105770,+!p4@ZBTB38!0.55!3.27!ZBTB38;;chr19:54041669..54041697,+!p2@ZNF3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| |expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.76!56.79!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.70!55.62!PRRX1;;chr8:72756637..72756664,-!p3@MSC!1.56!39.96!MSC;;chr11:46299199..46299233,+!p1@CREB3L1!1.55!169.21!CREB3L1;;chr19:45971246..45971265,+!p1@FOSB!1.53!575.64!FOSB;;chr8:72756267..72756296,-!p4@MSC!1.48!42.07!MSC;;chr1:170633348..170633399,+!p2@PRRX1!1.47!38.10!PRRX1;;chr21:36260773..36260804,-!p7@RUNX1!1.44!35.76!RUNX1;;chr1:170633262..170633285,+!p3@PRRX1!1.39!26.88!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.34!54.22!HIC1;;chr8:72756667..72756736,-!p2@MSC!1.34!32.02!MSC;;chr7:44143978..44143989,+!p2@AEBP1!1.24!30.15!AEBP1;;chr7:44143925..44143970,+!p1@AEBP1!1.23!344.96!AEBP1;;chr12:54402745..54402788,+!p1@HOXC8!1.23!15.89!HOXC8;;chr8:72756063..72756125,-!p1@MSC!1.15!26.88!MSC;;chr8:72756213..72756243,-!p5@MSC!1.15!17.06!MSC;;chr20:50179368..50179392,-!p2@NFATC2!1.14!16.59!NFATC2;;chr17:46132044..46132080,+!p4@NFE2L1!1.14!12.85!NFE2L1;;chr8:72756380..72756427,-!p8@MSC!1.13!12.62!MSC;;chr12:54393880..54393962,+!p1@HOXC9!1.13!12.39!HOXC9;;chr1:119530493..119530572,-!p1@TBX15!1.11!11.92!TBX15;;chr8:25902876..25902936,-!p1@EBF2!1.10!11.45!EBF2;;chr1:158979872..158979898,+!p3@IFI16!1.09!34.82!IFI16;;chr16:54320617..54320643,-!p3@IRX3!1.09!14.72!IRX3;;chr8:49833948..49833973,-!p2@SNAI2!1.08!71.05!SNAI2;;chr7:19157248..19157268,-!p1@TWIST1!1.06!29.21!TWIST1;;chr19:54058073..54058088,+!p1@ZNF331!1.06!10.52!ZNF331;;chr1:170632723..170632739,+!p8@PRRX1!1.06!10.52!PRRX1;;chr19:50432453..50432468,+!p1@ATF5!1.05!578.67!ATF5;;chr16:54320646..54320672,-!p2@IRX3!1.05!15.66!IRX3;;chr14:24837368..24837401,+!p1@NFATC4!1.04!23.84!NFATC4;;chr15:57511609..57511651,+!p2@TCF12!1.04!17.06!TCF12;;chr8:49833978..49833996,-!p1@SNAI2!1.03!200.76!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!1.03!32.02!TWIST2;;chr14:75745523..75745537,+!p1@FOS!1.01!1114.58!FOS;;chr2:119604456..119604501,-!p2@EN1!0.99!8.88!EN1;;chr17:1958388..1958404,+!p1@HIC1!0.97!54.22!HIC1;;chr2:176994408..176994492,+!p1@HOXD8!0.97!8.41!HOXD8;;chr1:170632959..170632987,+!p4@PRRX1!0.96!8.88!PRRX1;;chr10:64576105..64576133,-!p1@EGR2!0.95!16.59!EGR2;;chr19:13134772..13134822,+!p2@NFIX!0.95!11.69!NFIX;;chr10:31610110..31610159,+!p2@ZEB1!0.94!7.71!ZEB1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.94!7.71!HOXC5;;chr1:170632137..170632172,+!p10@PRRX1!0.94!7.71!PRRX1;;chr7:44143997..44144008,+!p3@AEBP1!0.93!9.58!AEBP1;;chr7:27205136..27205164,-!p1@HOXA9!0.93!7.48!HOXA9;;chr11:46299539..46299620,+!p2@CREB3L1!0.92!12.62!CREB3L1;;chr2:239756739..239756755,+!p2@TWIST2!0.90!12.15!TWIST2;;chr19:50435736..50435781,+!p3@ATF5!0.90!9.82!ATF5;;chr10:131762504..131762555,-!p1@EBF3!0.90!7.01!EBF3;;chr7:27192185..27192209,-!p1@HOXA3!0.90!7.01!HOXA3;;chr5:137804484..137804498,+!p2@EGR1!0.89!28.75!EGR1;;chr12:54380036..54380091,+!p4@HOXC10!0.89!6.78!HOXC10;;chr12:52445218..52445237,+!p1@NR4A1!0.87!85.07!NR4A1;;chr6:45296048..45296082,+!p1@RUNX2!0.87!7.48!RUNX2;;chr10:63809106..63809127,+!p1@ARID5B!0.85!86.71!ARID5B;;chr16:54320675..54320715,-!p1@IRX3!0.84!13.32!IRX3;;chr15:96874145..96874166,+!p7@NR2F2!0.84!11.92!NR2F2;;chr16:54320101..54320125,-!p4@IRX3!0.84!8.65!IRX3;;chr14:75746722..75746777,+!p2@FOS!0.84!7.71!FOS;;chr10:119303078..119303169,+!p2@EMX2!0.84!5.84!EMX2;;chr9:110252035..110252057,-!p1@KLF4!0.82!96.06!KLF4;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.41!IRX5;;chr1:170632250..170632277,+!p7@PRRX1!0.82!5.61!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!0.81!7.25!PRRX2;;chr14:62162285..62162296,+!p3@HIF1A!0.80!29.92!HIF1A;;chr12:54394309..54394336,+!p2@HOXC9!0.80!5.38!HOXC9;;chr5:2751762..2751784,-!p1@IRX2!0.80!5.38!IRX2;;chr1:170632115..170632136,+!p9@PRRX1!0.80!5.38!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!0.80!5.38!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!0.79!9.82!ZFP106;;chr16:31076332..31076388,-!p3@ZNF668!0.79!5.14!ZNF668;;chr7:27205106..27205134,-!p2@HOXA9!0.79!5.14!HOXA9;;chr1:200379104..200379128,-!p2@ZNF281!0.78!13.09!ZNF281;;chr9:102584262..102584276,+!p1@NR4A3!0.78!11.92!NR4A3;;chr9:16870659..16870675,-!p2@BNC2!0.78!6.31!BNC2;;chr14:62162258..62162269,+!p2@HIF1A!0.77!51.42!HIF1A;;chr2:19558373..19558392,-!p1@OSR1!0.77!14.26!OSR1;;chr4:111558135..111558198,-!p2@PITX2!0.77!4.91!PITX2;;chr12:54402790..54402805,+!p2@HOXC8!0.77!4.91!HOXC8;;chr1:170632477..170632506,+!p6@PRRX1!0.77!4.91!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.77!4.91!PRRX1;;chr3:193853927..193853944,+!p1@HES1!0.75!167.57!HES1;;chr9:102584159..102584174,+!p2@NR4A3!0.75!8.88!NR4A3;;chr14:95236440..95236465,-!p1@GSC!0.75!4.67!GSC;;chr7:19157043..19157088,-!p2@TWIST1!0.74!12.15!TWIST1;;chr8:72756194..72756208,-!p9@MSC!0.74!4.44!MSC;;chr18:19749541..19749557,+!p1@GATA6!0.73!14.96!GATA6;;chr9:16870710..16870763,-!p1@BNC2!0.73!7.95!BNC2;;chr21:36260343..36260402,-!p6@RUNX1!0.73!7.48!RUNX1;;chr3:141121847..141121868,+!p5@ZBTB38!0.73!7.01!ZBTB38;;chr16:54320158..54320200,-!p5@IRX3!0.73!6.54!IRX3;;chr17:46687959..46688007,-!p2@HOXB7!0.73!6.31!HOXB7;;chr11:120107344..120107351,+!p1@POU2F3!0.73!5.38!POU2F3;;chr18:19749386..19749404,+!p2@GATA6!0.72!6.31!GATA6;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.21!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.72!4.21!PRRX1;;chr3:71630980..71631110,-!p3@FOXP1!0.71!15.89!FOXP1;;chr3:5021268..5021282,+!p4@BHLHE40!0.71!9.11!BHLHE40;;chr8:99956662..99956684,+!p1@OSR2!0.71!6.78!OSR2;;chr17:46675420..46675465,-!p3@HOXB6!0.71!4.91!HOXB6;;chr12:54378923..54378966,+!p1@HOXC10!0.70!3.97!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.70!3.97!HOXC8;;chr12:57853634..57853662,+!p2@GLI1!0.70!3.97!GLI1;;chr8:72755987..72756002,-!p7@MSC!0.70!3.97!MSC;;chr4:174451370..174451387,-!p1@HAND2!0.70!3.97!HAND2;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.44!TCF4;;chr5:137801160..137801176,+!p1@EGR1!0.68!437.28!EGR1;;chr14:75894714..75894733,+!p1@JDP2!0.68!123.63!JDP2;;chr12:72056800..72056834,+!p1@THAP2!0.68!5.38!THAP2;;chr11:46333934..46333963,+!p5@CREB3L1!0.68!3.74!CREB3L1;;chr12:10870927..10870966,-!p5@CSDA!0.68!3.74!CSDA;;chr12:54422217..54422239,+!p3@HOXC6!0.68!3.74!HOXC6;;chr4:174450089..174450153,-!p2@HAND2!0.68!3.74!HAND2;;chr1:170633245..170633256,+!p14@PRRX1!0.68!3.74!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!0.68!3.74!PRRX2;;chr16:54320322..54320343,-!p7@IRX3!0.68!3.74!IRX3;;chr8:93074803..93074845,-!p1@RUNX1T1!0.68!3.74!RUNX1T1;;chr1:158979792..158979814,+!p2@IFI16!0.67!40.67!IFI16;;chr8:22550982..22550999,-!p1@EGR3!0.67!11.69!EGR3;;chr7:113726357..113726443,+!p1@FOXP2!0.67!6.78!FOXP2;;chr17:46688334..46688385,-!p1@HOXB7!0.67!5.61!HOXB7;;chr19:33865009..33865090,+!p3@CEBPG!0.67!5.14!CEBPG;;chr7:28448965..28448994,+!p2@CREB5!0.66!14.26!CREB5;;chr15:96874244..96874259,+!p5@NR2F2!0.66!9.58!NR2F2;;chr1:221052776..221052799,+!p1@HLX!0.66!7.01!HLX;;chr15:96874927..96874938,+!p8@NR2F2!0.65!8.18!NR2F2;;chr21:36260295..36260310,-!p3@RUNX1!0.65!6.08!RUNX1;;chr2:102091144..102091183,-!p2@RFX8!0.65!3.51!RFX8;;chr7:27224842..27224872,-!p1@HOXA11!0.65!3.51!HOXA11;;chr10:31608127..31608156,+!p1@ZEB1!0.64!73.39!ZEB1;;chr4:4861385..4861398,+!p1@MSX1!0.64!11.45!MSX1;;chr18:77155922..77155939,+!p1@NFATC1!0.64!10.28!NFATC1;;chr3:12329397..12329433,+!p2@PPARG!0.64!8.65!PPARG;;chr2:121493492..121493537,+!p2@GLI2!0.64!6.08!GLI2;;chr3:71114066..71114114,-!p1@FOXP1!0.63!78.29!FOXP1;;chr12:48298765..48298783,-!p2@VDR!0.63!7.48!VDR;;chr17:38256799..38256815,-!p3@NR1D1!0.63!6.54!NR1D1;;chr17:46682321..46682362,-!p1@HOXB6!0.63!3.27!HOXB6;;chr1:170632762..170632786,+!p13@PRRX1!0.63!3.27!PRRX1;;chr7:27183114..27183138,-!p3@HOXA5!0.63!3.27!HOXA5;;chr8:72756251..72756262,-!p12@MSC!0.63!3.27!MSC;;chr2:102091566..102091581,-!p1@RFX8!0.63!3.27!RFX8;;chr10:114710244..114710257,+!p3@TCF7L2!0.62!9.82!TCF7L2;;chr2:157189180..157189290,-!p1@NR4A2!0.61!18.93!NR4A2;;chr2:121493425..121493474,+!p1@GLI2!0.61!7.71!GLI2;;chr17:46622114..46622138,-!p4@HOXB2!0.61!5.14!HOXB2;;chr19:31840130..31840160,-!p2@TSHZ3!0.61!5.14!TSHZ3;;chr1:170632647..170632659,+!p17@PRRX1!0.61!3.04!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.61!3.04!PRRX1;;chr12:54394059..54394088,+!p3@HOXC9!0.61!3.04!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.61!3.04!HOXC5;;chr12:57914286..57914304,-!p1@DDIT3!0.60!130.88!DDIT3;;chr21:36260463..36260480,-!p9@RUNX1!0.60!4.21!RUNX1;;chr1:59249688..59249703,-!p3@JUN!0.59!21.03!JUN;;chr18:22932080..22932170,-!p1@ZNF521!0.59!14.49!ZNF521;;chr7:150945754..150945789,-!p2@SMARCD3!0.59!10.52!SMARCD3;;chr15:96869255..96869291,+!p6@NR2F2!0.59!5.84!NR2F2;;chr17:20492136..20492165,+!p1@MEIS3P2!0.59!4.91!MEIS3P2;;chr9:110250697..110250738,-!p2@KLF4!0.59!3.51!KLF4;;chr1:212782094..212782109,+!p1@ATF3!0.58!93.95!ATF3;;chr15:96874012..96874042,+!p2@NR2F2!0.58!31.08!NR2F2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.58!18.93!ZNF10;;chr1:158979851..158979865,+!p5@IFI16!0.58!7.01!IFI16;;chr1:211433417..211433428,+!p17@RCOR3!0.58!2.80!RCOR3;;chr17:46659728..46659749,-!p3@HOXB3!0.58!2.80!HOXB3;;chr3:141087454..141087465,+!p19@ZBTB38!0.58!2.80!ZBTB38;;chr7:1577899..1577943,+!p3@MAFK!0.58!2.80!MAFK;;chr8:77593750..77593757,+!p3@ZFHX4!0.58!2.80!ZFHX4;;chr10:119302645..119302712,+!p3@EMX2!0.58!2.80!EMX2;;chr17:46621937..46621966,-!p2@HOXB2!0.57!8.65!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.57!7.01!HOXB2;;chr18:3449821..3449860,+!p7@TGIF1!0.57!5.61!TGIF1;;chr15:96874216..96874236,+!p13@NR2F2!0.57!4.67!NR2F2;;chr3:170076314..170076334,+!p2@SKIL!0.57!3.74!SKIL;;chr20:42543441..42543497,+!p1@TOX2!0.56!14.26!TOX2;;chr21:36259445..36259519,-!p4@RUNX1!0.56!8.65!RUNX1;;chr12:80085061..80085119,-!p6@PAWR!0.56!4.67!PAWR;;chr3:114343768..114343822,-!p1@ZBTB20!0.55!13.56!ZBTB20;;chr2:74229812..74229867,+!p1@TET3!0.55!7.48!TET3;;chr10:63809134..63809145,+!p6@ARID5B!0.55!6.78!ARID5B;;chr6:85474299..85474324,-!p1@TBX18!0.55!5.14!TBX18;;chr7:137686763..137686784,-!p5@CREB3L2!0.55!4.91!CREB3L2;;chr19:47922750..47922795,-!p1@MEIS3!0.55!4.67!MEIS3;;chr15:96876966..96877017,+!p12@NR2F2!0.55!3.97!NR2F2;;chr3:141105705..141105770,+!p4@ZBTB38!0.55!3.27!ZBTB38;;chr19:54041669..54041697,+!p2@ZNF3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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002570 | |||
|ffid_belonging_in_development=CL:0000134 | |ffid_belonging_in_development=CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 40: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor2.CNhs12364.11748-123G2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor2.CNhs12364.11748-123G2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor2.CNhs12364.11748-123G2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor2.CNhs12364.11748-123G2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor2.CNhs12364.11748-123G2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11748-123G2 | |id=FF:11748-123G2 | ||
|is_a=EFO:0002091;;FF:0000270 | |is_a=EFO:0002091;;FF:0000270 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12364 | |library_id=CNhs12364 | ||
|library_id_phase_based=2:CNhs12364 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11748 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11748 | |||
|name=mesenchymal precursor cell - adipose, donor2 | |name=mesenchymal precursor cell - adipose, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 49: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12364,LSID914,release011,COMPLETED | |profile_hcage=CNhs12364,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 88: | Line 101: | ||
|top_motifs=TAL1_TCF{3,4,12}:1.82309008187;ZNF238:1.64154714482;ALX4:1.49595885508;ATF6:1.46355695433;MAFB:1.40624871417;HOX{A5,B5}:1.4060817386;XBP1:1.38809027303;ESR1:1.38682660819;HIF1A:1.33923301968;EN1,2:1.23706711543;UFEwm:1.18546797366;NKX3-1:1.17167369546;GZF1:1.109090983;RXRA_VDR{dimer}:1.01807276233;HES1:0.944760313568;NR3C1:0.934895425686;NANOG{mouse}:0.920472047955;SRF:0.904794833974;MYBL2:0.888380516249;NFIX:0.879610000041;NFATC1..3:0.836264046177;NKX2-2,8:0.825574829581;EVI1:0.795168943961;GFI1B:0.775455825522;MZF1:0.772059552428;TEAD1:0.771611617185;PAX8:0.738191130265;TLX1..3_NFIC{dimer}:0.737126961585;EBF1:0.726116396188;PAX4:0.713440194738;HLF:0.708814620146;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.683363372807;GLI1..3:0.682078658377;ZNF384:0.678718461518;GTF2I:0.678061227237;TFAP4:0.65969571333;RXR{A,B,G}:0.658266280889;KLF4:0.649556390438;TP53:0.615305580668;HSF1,2:0.610806423348;SOX17:0.60441053737;NFE2L2:0.566885083239;HOX{A4,D4}:0.543979381203;NR6A1:0.503825993324;TFCP2:0.488672822575;ZIC1..3:0.450818425125;STAT1,3:0.449273604189;YY1:0.434283120039;CREB1:0.426932170663;NFE2L1:0.39834692725;BACH2:0.386253279841;PAX1,9:0.3621511691;MAZ:0.356108845536;IKZF1:0.355451211879;PATZ1:0.353370011056;NKX3-2:0.352105164325;LHX3,4:0.326164066413;bHLH_family:0.321972317309;TLX2:0.320897298059;GFI1:0.31179162164;NKX2-1,4:0.292980184276;STAT2,4,6:0.280333554082;TFAP2B:0.238749828493;GCM1,2:0.23631603741;ATF4:0.209974138282;TBX4,5:0.194063425463;PRDM1:0.190814154197;FOS_FOS{B,L1}_JUN{B,D}:0.188404737149;TBP:0.186852247747;AIRE:0.186402371092;DBP:0.182850997207;ELK1,4_GABP{A,B1}:0.180063005831;POU6F1:0.171122231777;CEBPA,B_DDIT3:0.167735230988;MTE{core}:0.152004693287;PAX5:0.143684349719;RFX1:0.143340308872;AHR_ARNT_ARNT2:0.142980210261;RREB1:0.142502243532;GTF2A1,2:0.132704222502;NFE2:0.120487982166;RUNX1..3:0.111125992236;TFAP2{A,C}:0.0912242210167;CDC5L:0.0734584269635;HMGA1,2:0.066475970084;ZNF148:0.0629839755005;TEF:0.0623583225481;GATA4:0.0507549746681;IRF1,2:0.044173235042;XCPE1{core}:0.0402203294848;FOSL2:0.025325073378;ZBTB6:0.0235219165464;FOXA2:0.0200644017105;ZNF143:-0.00104017974556;NKX6-1,2:-0.0117160216447;FOXL1:-0.0121322269166;AR:-0.0146671423937;ZNF423:-0.0341657858197;PAX2:-0.0406014259922;EGR1..3:-0.0417379287906;HAND1,2:-0.0521098386433;MYFfamily:-0.0712854535389;ESRRA:-0.0735207115839;MEF2{A,B,C,D}:-0.0880178883458;BPTF:-0.0907772239818;NRF1:-0.0936959989141;HNF1A:-0.112060652887;HMX1:-0.114796606107;POU3F1..4:-0.115662559197;NFIL3:-0.131850244344;POU5F1:-0.141533487193;ZBTB16:-0.144002894368;JUN:-0.149243274321;HBP1_HMGB_SSRP1_UBTF:-0.150747836027;ATF5_CREB3:-0.15990884253;EP300:-0.161141749194;SREBF1,2:-0.182182220866;FOX{I1,J2}:-0.182928815614;SPZ1:-0.188553861921;HOX{A6,A7,B6,B7}:-0.18859911872;FOXM1:-0.192149637994;MYB:-0.199518524469;DMAP1_NCOR{1,2}_SMARC:-0.206665718853;ARID5B:-0.233394830184;REST:-0.264824996844;NFY{A,B,C}:-0.287204355124;SMAD1..7,9:-0.294981535739;NFKB1_REL_RELA:-0.30416078645;FOXO1,3,4:-0.323311492782;TOPORS:-0.332690159451;ELF1,2,4:-0.340517809973;LEF1_TCF7_TCF7L1,2:-0.34792331831;PRRX1,2:-0.351931049603;PAX3,7:-0.354275355609;MED-1{core}:-0.363388382265;FOXP3:-0.369120263619;NHLH1,2:-0.369340393666;ZFP161:-0.398930868853;PBX1:-0.39944282075;E2F1..5:-0.40146270209;ATF2:-0.405690896416;SOX2:-0.40825172246;TFDP1:-0.414174229876;FOX{D1,D2}:-0.420379202218;HIC1:-0.420896314875;SP1:-0.435936574421;CDX1,2,4:-0.440191003905;HNF4A_NR2F1,2:-0.442586982483;SPI1:-0.450088572816;CRX:-0.458370306886;NR5A1,2:-0.461688812185;CUX2:-0.464776191716;IKZF2:-0.492214478237;RFX2..5_RFXANK_RFXAP:-0.509375119213;ALX1:-0.510502467355;NR1H4:-0.530654842357;OCT4_SOX2{dimer}:-0.53071425626;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.585085180851;MTF1:-0.587469532561;GATA6:-0.58986954291;IRF7:-0.590070337471;SOX5:-0.594112199584;ETS1,2:-0.637859222384;POU2F1..3:-0.658803611774;SOX{8,9,10}:-0.668735653042;RBPJ:-0.680697509585;RORA:-0.687184052839;STAT5{A,B}:-0.693063447792;BREu{core}:-0.697084207625;SPIB:-0.697523303953;ONECUT1,2:-0.699926534354;VSX1,2:-0.711437116418;PPARG:-0.778481988491;TGIF1:-0.78245133128;LMO2:-0.803065618081;POU1F1:-0.848923690223;FOXD3:-0.855422562059;FOXP1:-0.855499154024;NKX2-3_NKX2-5:-0.856558212411;SNAI1..3:-0.9131297897;PAX6:-0.914892794577;FOX{F1,F2,J1}:-0.923343783638;FOXN1:-0.954006853819;T:-0.983485513438;FOXQ1:-0.983961342177;ZEB1:-1.0365295833;ADNP_IRX_SIX_ZHX:-1.05537438843;NANOG:-1.09281408536;HOXA9_MEIS1:-1.12905840999;PITX1..3:-1.32060048206;PDX1:-1.42150438081;MYOD1:-1.583353745 | |top_motifs=TAL1_TCF{3,4,12}:1.82309008187;ZNF238:1.64154714482;ALX4:1.49595885508;ATF6:1.46355695433;MAFB:1.40624871417;HOX{A5,B5}:1.4060817386;XBP1:1.38809027303;ESR1:1.38682660819;HIF1A:1.33923301968;EN1,2:1.23706711543;UFEwm:1.18546797366;NKX3-1:1.17167369546;GZF1:1.109090983;RXRA_VDR{dimer}:1.01807276233;HES1:0.944760313568;NR3C1:0.934895425686;NANOG{mouse}:0.920472047955;SRF:0.904794833974;MYBL2:0.888380516249;NFIX:0.879610000041;NFATC1..3:0.836264046177;NKX2-2,8:0.825574829581;EVI1:0.795168943961;GFI1B:0.775455825522;MZF1:0.772059552428;TEAD1:0.771611617185;PAX8:0.738191130265;TLX1..3_NFIC{dimer}:0.737126961585;EBF1:0.726116396188;PAX4:0.713440194738;HLF:0.708814620146;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.683363372807;GLI1..3:0.682078658377;ZNF384:0.678718461518;GTF2I:0.678061227237;TFAP4:0.65969571333;RXR{A,B,G}:0.658266280889;KLF4:0.649556390438;TP53:0.615305580668;HSF1,2:0.610806423348;SOX17:0.60441053737;NFE2L2:0.566885083239;HOX{A4,D4}:0.543979381203;NR6A1:0.503825993324;TFCP2:0.488672822575;ZIC1..3:0.450818425125;STAT1,3:0.449273604189;YY1:0.434283120039;CREB1:0.426932170663;NFE2L1:0.39834692725;BACH2:0.386253279841;PAX1,9:0.3621511691;MAZ:0.356108845536;IKZF1:0.355451211879;PATZ1:0.353370011056;NKX3-2:0.352105164325;LHX3,4:0.326164066413;bHLH_family:0.321972317309;TLX2:0.320897298059;GFI1:0.31179162164;NKX2-1,4:0.292980184276;STAT2,4,6:0.280333554082;TFAP2B:0.238749828493;GCM1,2:0.23631603741;ATF4:0.209974138282;TBX4,5:0.194063425463;PRDM1:0.190814154197;FOS_FOS{B,L1}_JUN{B,D}:0.188404737149;TBP:0.186852247747;AIRE:0.186402371092;DBP:0.182850997207;ELK1,4_GABP{A,B1}:0.180063005831;POU6F1:0.171122231777;CEBPA,B_DDIT3:0.167735230988;MTE{core}:0.152004693287;PAX5:0.143684349719;RFX1:0.143340308872;AHR_ARNT_ARNT2:0.142980210261;RREB1:0.142502243532;GTF2A1,2:0.132704222502;NFE2:0.120487982166;RUNX1..3:0.111125992236;TFAP2{A,C}:0.0912242210167;CDC5L:0.0734584269635;HMGA1,2:0.066475970084;ZNF148:0.0629839755005;TEF:0.0623583225481;GATA4:0.0507549746681;IRF1,2:0.044173235042;XCPE1{core}:0.0402203294848;FOSL2:0.025325073378;ZBTB6:0.0235219165464;FOXA2:0.0200644017105;ZNF143:-0.00104017974556;NKX6-1,2:-0.0117160216447;FOXL1:-0.0121322269166;AR:-0.0146671423937;ZNF423:-0.0341657858197;PAX2:-0.0406014259922;EGR1..3:-0.0417379287906;HAND1,2:-0.0521098386433;MYFfamily:-0.0712854535389;ESRRA:-0.0735207115839;MEF2{A,B,C,D}:-0.0880178883458;BPTF:-0.0907772239818;NRF1:-0.0936959989141;HNF1A:-0.112060652887;HMX1:-0.114796606107;POU3F1..4:-0.115662559197;NFIL3:-0.131850244344;POU5F1:-0.141533487193;ZBTB16:-0.144002894368;JUN:-0.149243274321;HBP1_HMGB_SSRP1_UBTF:-0.150747836027;ATF5_CREB3:-0.15990884253;EP300:-0.161141749194;SREBF1,2:-0.182182220866;FOX{I1,J2}:-0.182928815614;SPZ1:-0.188553861921;HOX{A6,A7,B6,B7}:-0.18859911872;FOXM1:-0.192149637994;MYB:-0.199518524469;DMAP1_NCOR{1,2}_SMARC:-0.206665718853;ARID5B:-0.233394830184;REST:-0.264824996844;NFY{A,B,C}:-0.287204355124;SMAD1..7,9:-0.294981535739;NFKB1_REL_RELA:-0.30416078645;FOXO1,3,4:-0.323311492782;TOPORS:-0.332690159451;ELF1,2,4:-0.340517809973;LEF1_TCF7_TCF7L1,2:-0.34792331831;PRRX1,2:-0.351931049603;PAX3,7:-0.354275355609;MED-1{core}:-0.363388382265;FOXP3:-0.369120263619;NHLH1,2:-0.369340393666;ZFP161:-0.398930868853;PBX1:-0.39944282075;E2F1..5:-0.40146270209;ATF2:-0.405690896416;SOX2:-0.40825172246;TFDP1:-0.414174229876;FOX{D1,D2}:-0.420379202218;HIC1:-0.420896314875;SP1:-0.435936574421;CDX1,2,4:-0.440191003905;HNF4A_NR2F1,2:-0.442586982483;SPI1:-0.450088572816;CRX:-0.458370306886;NR5A1,2:-0.461688812185;CUX2:-0.464776191716;IKZF2:-0.492214478237;RFX2..5_RFXANK_RFXAP:-0.509375119213;ALX1:-0.510502467355;NR1H4:-0.530654842357;OCT4_SOX2{dimer}:-0.53071425626;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.585085180851;MTF1:-0.587469532561;GATA6:-0.58986954291;IRF7:-0.590070337471;SOX5:-0.594112199584;ETS1,2:-0.637859222384;POU2F1..3:-0.658803611774;SOX{8,9,10}:-0.668735653042;RBPJ:-0.680697509585;RORA:-0.687184052839;STAT5{A,B}:-0.693063447792;BREu{core}:-0.697084207625;SPIB:-0.697523303953;ONECUT1,2:-0.699926534354;VSX1,2:-0.711437116418;PPARG:-0.778481988491;TGIF1:-0.78245133128;LMO2:-0.803065618081;POU1F1:-0.848923690223;FOXD3:-0.855422562059;FOXP1:-0.855499154024;NKX2-3_NKX2-5:-0.856558212411;SNAI1..3:-0.9131297897;PAX6:-0.914892794577;FOX{F1,F2,J1}:-0.923343783638;FOXN1:-0.954006853819;T:-0.983485513438;FOXQ1:-0.983961342177;ZEB1:-1.0365295833;ADNP_IRX_SIX_ZHX:-1.05537438843;NANOG:-1.09281408536;HOXA9_MEIS1:-1.12905840999;PITX1..3:-1.32060048206;PDX1:-1.42150438081;MYOD1:-1.583353745 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11748-123G2;search_select_hide=table117:FF:11748-123G2 | |||
}} | }} |
Latest revision as of 18:17, 4 June 2020
Name: | mesenchymal precursor cell - adipose, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12364 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12364
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12364
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.973 |
10 | 10 | 0.751 |
100 | 100 | 0.308 |
101 | 101 | 0.51 |
102 | 102 | 0.0958 |
103 | 103 | 0.878 |
104 | 104 | 0.728 |
105 | 105 | 0.189 |
106 | 106 | 0.893 |
107 | 107 | 0.44 |
108 | 108 | 0.683 |
109 | 109 | 0.797 |
11 | 11 | 0.714 |
110 | 110 | 0.0799 |
111 | 111 | 0.488 |
112 | 112 | 0.467 |
113 | 113 | 5.05905e-4 |
114 | 114 | 0.839 |
115 | 115 | 0.769 |
116 | 116 | 0.219 |
117 | 117 | 0.194 |
118 | 118 | 0.74 |
119 | 119 | 0.547 |
12 | 12 | 0.762 |
120 | 120 | 0.397 |
121 | 121 | 0.946 |
122 | 122 | 0.0194 |
123 | 123 | 1.75085e-4 |
124 | 124 | 0.137 |
125 | 125 | 0.925 |
126 | 126 | 0.666 |
127 | 127 | 0.623 |
128 | 128 | 0.905 |
129 | 129 | 0.534 |
13 | 13 | 0.543 |
130 | 130 | 0.488 |
131 | 131 | 0.794 |
132 | 132 | 0.864 |
133 | 133 | 0.132 |
134 | 134 | 0.196 |
135 | 135 | 0.503 |
136 | 136 | 0.737 |
137 | 137 | 0.656 |
138 | 138 | 0.602 |
139 | 139 | 0.72 |
14 | 14 | 0.039 |
140 | 140 | 0.548 |
141 | 141 | 0.526 |
142 | 142 | 0.893 |
143 | 143 | 0.613 |
144 | 144 | 0.724 |
145 | 145 | 0.517 |
146 | 146 | 0.635 |
147 | 147 | 0.0909 |
148 | 148 | 0.144 |
149 | 149 | 0.0515 |
15 | 15 | 0.629 |
150 | 150 | 0.126 |
151 | 151 | 0.475 |
152 | 152 | 0.0297 |
153 | 153 | 0.411 |
154 | 154 | 0.929 |
155 | 155 | 0.0145 |
156 | 156 | 0.293 |
157 | 157 | 0.974 |
158 | 158 | 0.00907 |
159 | 159 | 0.141 |
16 | 16 | 0.113 |
160 | 160 | 0.398 |
161 | 161 | 0.48 |
162 | 162 | 0.511 |
163 | 163 | 0.226 |
164 | 164 | 0.0328 |
165 | 165 | 0.648 |
166 | 166 | 0.298 |
167 | 167 | 0.765 |
168 | 168 | 0.759 |
169 | 169 | 0.0407 |
17 | 17 | 0.853 |
18 | 18 | 0.03 |
19 | 19 | 0.0418 |
2 | 2 | 0.92 |
20 | 20 | 0.94 |
21 | 21 | 0.0367 |
22 | 22 | 0.487 |
23 | 23 | 0.684 |
24 | 24 | 0.254 |
25 | 25 | 0.133 |
26 | 26 | 0.945 |
27 | 27 | 0.724 |
28 | 28 | 0.327 |
29 | 29 | 0.176 |
3 | 3 | 0.986 |
30 | 30 | 0.683 |
31 | 31 | 0.782 |
32 | 32 | 1.96779e-13 |
33 | 33 | 0.693 |
34 | 34 | 0.964 |
35 | 35 | 0.678 |
36 | 36 | 0.0232 |
37 | 37 | 0.0467 |
38 | 38 | 0.27 |
39 | 39 | 0.521 |
4 | 4 | 0.492 |
40 | 40 | 0.0354 |
41 | 41 | 0.0509 |
42 | 42 | 0.284 |
43 | 43 | 0.788 |
44 | 44 | 0.683 |
45 | 45 | 0.4 |
46 | 46 | 0.681 |
47 | 47 | 0.585 |
48 | 48 | 0.98 |
49 | 49 | 0.121 |
5 | 5 | 0.912 |
50 | 50 | 0.608 |
51 | 51 | 0.951 |
52 | 52 | 0.911 |
53 | 53 | 0.036 |
54 | 54 | 0.909 |
55 | 55 | 0.448 |
56 | 56 | 0.447 |
57 | 57 | 0.424 |
58 | 58 | 0.349 |
59 | 59 | 0.866 |
6 | 6 | 0.478 |
60 | 60 | 0.937 |
61 | 61 | 0.644 |
62 | 62 | 0.648 |
63 | 63 | 0.69 |
64 | 64 | 0.838 |
65 | 65 | 0.833 |
66 | 66 | 0.615 |
67 | 67 | 0.758 |
68 | 68 | 0.493 |
69 | 69 | 0.531 |
7 | 7 | 0.271 |
70 | 70 | 0.673 |
71 | 71 | 0.425 |
72 | 72 | 0.48 |
73 | 73 | 0.0205 |
74 | 74 | 0.042 |
75 | 75 | 0.136 |
76 | 76 | 0.69 |
77 | 77 | 0.264 |
78 | 78 | 0.0865 |
79 | 79 | 0.0668 |
8 | 8 | 0.632 |
80 | 80 | 0.724 |
81 | 81 | 0.728 |
82 | 82 | 0.843 |
83 | 83 | 0.699 |
84 | 84 | 0.87 |
85 | 85 | 0.6 |
86 | 86 | 0.215 |
87 | 87 | 0.362 |
88 | 88 | 0.667 |
89 | 89 | 0.309 |
9 | 9 | 0.688 |
90 | 90 | 0.944 |
91 | 91 | 0.351 |
92 | 92 | 0.748 |
93 | 93 | 0.978 |
94 | 94 | 0.633 |
95 | 95 | 0.0565 |
96 | 96 | 0.482 |
97 | 97 | 0.317 |
98 | 98 | 0.1 |
99 | 99 | 0.358 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12364
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002570 (mesenchymal stem cell of adipose)
UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000270 (mesenchymal precursor cell of adipose)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)