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{{f5samples
{{f5samples
|id=FF:11780-124A7
|DRA_sample_Accession=CAGE@SAMD00005426
|name=CD4+CD25+CD45RA+ naive regulatory T cells, donor1
|accession_numbers=CAGE;DRX008060;DRR008932;DRZ000357;DRZ001742;DRZ011707;DRZ013092
|sample_id=11780
|ancestors_in_anatomy_facet=
|rna_tube_id=124A7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624,CL:0000815,CL:0000898,CL:0000792,CL:0002677
|rna_box=124
|rna_position=A7
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=1
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=blood
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=25
|sample_ethnicity=
|rna_rin=
|rna_od260/230=0.62
|rna_od260/280=1.97
|sample_cell_type=T cell
|sample_cell_line=
|sample_collaboration=Michael Rehli (University of Regensberg)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=0.9014
|rna_concentration=0.09014
|sample_note=
|profile_hcage=CNhs13238,LSID1006,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000051,CL:0000063,CL:0000084,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000542,CL:0000548,CL:0000566,CL:0000624,CL:0000723,CL:0000738,CL:0000789,CL:0000790,CL:0000791,CL:0000792,CL:0000813,CL:0000815,CL:0000827,CL:0000837,CL:0000838,CL:0000988,CL:0002031,CL:0002032,CL:0002087,CL:0002320,CL:0002371,CL:0002419,CL:0002420,CL:0002678
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
|comment=Previously: CD4-positiveCD25-positiveCD45RA+ memory regulatory T cells, donor1. TODO: full classification
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.23!167.85!FOXP3;;chr3:71355163..71355209,-!p5@FOXP1!2.17!199.46!FOXP1;;chr3:63953435..63953499,+!p1@ATXN7!2.01!100.71!ATXN7;;chr19:54058073..54058088,+!p1@ZNF331!1.94!86.37!ZNF331;;chr4:109087445..109087463,-!p1@LEF1!1.90!77.90!LEF1;;chr19:16435625..16435682,+!p1@KLF2!1.82!1938.59!KLF2;;chr4:109090075..109090095,-!p2@LEF1!1.82!65.51!LEF1;;chr6:91006518..91006570,-!p1@BACH2!1.81!143.08!BACH2;;chr5:133451294..133451310,+!p2@TCF7!1.79!60.30!TCF7;;chr7:50343634..50343717,+!p2@IKZF1!1.78!58.99!IKZF1;;chr19:54041669..54041697,+!p2@ZNF331!1.77!58.34!ZNF331;;chr10:35484053..35484076,+!p1@CREM!1.76!137.54!CREM;;chr1:25256756..25256774,-!p1@RUNX3!1.75!100.38!RUNX3;;chrX:106960285..106960299,-!p1@TSC22D3!1.72!1302.71!TSC22D3;;chr2:157189180..157189290,-!p1@NR4A2!1.72!257.80!NR4A2;;chr3:71542615..71542644,-!p12@FOXP1!1.72!51.50!FOXP1;;chr19:19779619..19779670,+!p1@ZNF101!1.71!137.21!ZNF101;;chrY:21906594..21906622,-!p1@KDM5D!1.64!42.70!KDM5D;;chr5:133450365..133450444,+!p1@TCF7!1.58!162.31!TCF7;;chr10:35416142..35416169,+!p3@CREM!1.57!93.87!CREM;;chr2:231090433..231090469,+!p1@SP140!1.56!35.20!SP140;;chr19:12902289..12902307,+!p1@JUNB!1.52!6958.44!JUNB;;chr3:18486354..18486377,-!p2@SATB1!1.52!40.09!SATB1;;chr4:109089901..109089930,-!p3@LEF1!1.49!29.98!LEF1;;chr17:37934365..37934387,-!p2@IKZF3!1.49!29.98!IKZF3;;chr6:391743..391759,+!p1@IRF4!1.49!29.98!IRF4;;chr2:100759037..100759058,-!p2@AFF3!1.48!29.01!AFF3;;chr2:97202991..97203043,+!p3@ARID5A!1.45!27.38!ARID5A;;chr17:38497662..38497713,+!p4@RARA!1.43!30.31!RARA;;chr2:100759010..100759035,-!p1@AFF3!1.42!25.10!AFF3;;chr11:128392273..128392308,-!p2@ETS1!1.41!100.71!ETS1;;chr3:71353892..71353928,-!p31@FOXP1!1.41!24.77!FOXP1;;chr14:64971288..64971316,-!p2@ZBTB25!1.39!70.40!ZBTB25;;chr7:50343895..50343936,+!p5@IKZF1!1.39!23.79!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.38!61.60!AKNA;;chr10:35416172..35416184,+!p13@CREM!1.38!23.14!CREM;;chr10:35484090..35484104,+!p6@CREM!1.38!23.14!CREM;;chr5:133451347..133451358,+!p3@TCF7!1.37!22.49!TCF7;;chr9:3525727..3525828,-!p2@RFX3!1.36!55.08!RFX3;;chr8:123793988..123794016,+!p1@ZHX2!1.33!35.85!ZHX2;;chr2:192015701..192015743,-!p1@STAT4!1.32!27.05!STAT4;;chr6:91006575..91006602,-!p2@BACH2!1.31!28.68!BACH2;;chr6:91006503..91006517,-!p3@BACH2!1.31!19.56!BACH2;;chr3:71542651..71542683,-!p22@FOXP1!1.31!19.56!FOXP1;;chr4:109089573..109089585,-!p8@LEF1!1.31!19.23!LEF1;;chr2:97202480..97202499,+!p1@ARID5A!1.29!180.89!ARID5A;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.29!102.67!ZNF10;;chr3:18480217..18480239,-!p3@SATB1!1.28!18.25!SATB1;;chr4:109088089..109088101,-!p11@LEF1!1.26!17.27!LEF1;;chr10:35416223..35416234,+!p12@CREM!1.26!17.27!CREM;;chr1:45805693..45805718,+!p3@TOE1!1.25!35.85!TOE1;;chr2:214017168..214017189,-!p8@IKZF2!1.25!16.95!IKZF2;;chr4:38665769..38665801,+!p2@KLF3!1.24!144.06!KLF3;;chr15:60884706..60884743,-!p1@RORA!1.24!83.76!RORA;;chr8:81397846..81397860,+!p3@ZBTB10!1.24!20.53!ZBTB10;;chr7:50344251..50344288,+!p3@IKZF1!1.24!16.30!IKZF1;;chr21:36421535..36421610,-!p2@RUNX1!1.23!56.38!RUNX1;;chr2:192015750..192015793,-!p2@STAT4!1.22!20.86!STAT4;;chr3:71542684..71542720,-!p18@FOXP1!1.22!15.64!FOXP1;;chr4:109088130..109088163,-!p13@LEF1!1.22!15.64!LEF1;;chr9:102584262..102584276,+!p1@NR4A3!1.20!32.92!NR4A3;;chr11:128392085..128392232,-!p1@ETS1!1.19!472.91!ETS1;;chr19:16435523..16435619,+!p2@KLF2!1.19!19.88!KLF2;;chr6:12009042..12009092,+!p6@HIVEP1!1.18!18.58!HIVEP1;;chr19:19779686..19779697,+!p3@ZNF101!1.18!16.62!ZNF101;;chr19:19729477..19729542,-!p1@PBX4!1.17!29.66!PBX4;;chr19:12444440..12444455,-!p1@ZNF563!1.17!24.12!ZNF563;;chr19:54041645..54041661,+!p5@ZNF331!1.17!13.69!ZNF331;;chr13:41240717..41240735,-!p2@FOXO1!1.16!90.28!FOXO1;;chr14:64970670..64970712,-!p3@ZBTB25!1.16!29.01!ZBTB25;;chr2:231090471..231090504,+!p2@SP140!1.16!13.36!SP140;;chr3:63898321..63898396,+!p3@ATXN7!1.14!29.01!ATXN7;;chr16:3313791..3313834,+!p2@ZNF263!1.14!28.68!ZNF263;;chr20:50159198..50159299,-!p1@NFATC2!1.14!18.90!NFATC2;;chr19:54040550..54040594,+!p20@ZNF331!1.14!12.71!ZNF331;;chr9:20620829..20620848,-!p7@MLLT3!1.14!12.71!MLLT3;;chr2:214016254..214016282,-!p7@IKZF2!1.13!12.39!IKZF2;;chr3:71542747..71542766,-!p34@FOXP1!1.13!12.39!FOXP1;;chr4:38665810..38665827,+!p1@KLF3!1.12!176.00!KLF3;;chr3:39195075..39195088,-!p1@CSRNP1!1.12!76.92!CSRNP1;;chr19:16435423..16435484,+!p5@KLF2!1.12!12.06!KLF2;;chr14:75745523..75745537,+!p1@FOS!1.11!1418.09!FOS;;chr9:20621927..20621996,-!p3@MLLT3!1.11!20.21!MLLT3;;chr14:75988771..75988826,+!p1@BATF!1.11!15.97!BATF;;chr12:72056800..72056834,+!p1@THAP2!1.11!15.97!THAP2;;chr13:41593425..41593480,-!p1@ELF1!1.10!73.33!ELF1;;chr18:3449330..3449344,+!p10@TGIF1!1.10!15.32!TGIF1;;chr8:81397876..81397898,+!p5@ZBTB10!1.09!13.36!ZBTB10;;chr9:20622444..20622468,-!p2@MLLT3!1.08!36.18!MLLT3;;chrX:101186981..101187030,-!p1@ZMAT1!1.07!35.20!ZMAT1;;chr17:38497715..38497734,+!p8@RARA!1.07!10.76!RARA;;chr8:81397820..81397836,+!p2@ZBTB10!1.06!13.04!ZBTB10;;chr10:35416125..35416138,+!p10@CREM!1.06!12.39!CREM;;chr2:214015343..214015366,-!p3@IKZF2!1.06!10.43!IKZF2;;chr4:109089996..109090012,-!p5@LEF1!1.05!10.10!LEF1;;chr17:56565257..56565283,-!p2@HSF5!1.05!10.10!HSF5;;chr10:35485013..35485034,+!p15@CREM!1.05!10.10!CREM;;chr19:45971246..45971265,+!p1@FOSB!1.04!187.08!FOSB;;chrX:106960221..106960236,-!p3@TSC22D3!1.04!28.03!TSC22D3;;chr18:77155922..77155939,+!p1@NFATC1!1.04!27.70!NFATC1;;chr9:114287433..114287513,+!p1@ZNF483!1.03!25.42!ZNF483;;chr3:23986824..23986848,+!p2@NR1D2!1.02!54.43!NR1D2;;chr19:52674696..52674758,-!p1@ZNF836!1.02!28.68!ZNF836;;chr8:60031619..60031676,-!p1@TOX!1.02!20.53!TOX;;chr4:109086281..109086319,-!p9@LEF1!1.02!9.45!LEF1;;chr12:57914286..57914304,-!p1@DDIT3!1.01!341.24!DDIT3;;chrX:106960180..106960197,-!p2@TSC22D3!1.01!35.53!TSC22D3;;chr3:71542827..71542838,-!p53@FOXP1!1.01!9.13!FOXP1;;chr20:56195474..56195506,-!p1@ZBP1!1.01!9.13!ZBP1;;chr14:99738138..99738163,-!p1@BCL11B!1.01!9.13!BCL11B;;chr13:41240737..41240787,-!p1@FOXO1!1.00!108.86!FOXO1;;chr2:208394817..208394834,+!p3@CREB1!1.00!36.83!CREB1;;chr15:60884747..60884774,-!p3@RORA!0.99!21.84!RORA;;chr13:74707894..74707947,-!p6@KLF12!0.99!9.78!KLF12;;chrY:2803415..2803468,+!p1@ZFY!0.99!8.80!ZFY;;chr4:109090054..109090073,-!p7@LEF1!0.99!8.80!LEF1;;chr5:142814241..142814278,-!p12@NR3C1!0.99!8.80!NR3C1;;chr19:19843900..19843928,-!p1@ZNF14!0.96!42.04!ZNF14;;chr9:102584241..102584261,+!p4@NR4A3!0.96!12.71!NR4A3;;chr6:106546808..106546833,+!p3@PRDM1!0.96!10.43!PRDM1;;chr12:56418637..56418648,+!p9@IKZF4!0.96!8.15!IKZF4;;chr19:18392422..18392440,-!p1@JUND!0.95!1128.99!JUND;;chr19:45972701..45972774,+!p2@FOSB!0.95!11.08!FOSB;;chr10:8096772..8096787,+!p2@GATA3!0.95!9.45!GATA3;;chr19:16435735..16435773,+!p4@KLF2!0.95!7.82!KLF2;;chr3:18487057..18487105,-!p4@SATB1!0.95!7.82!SATB1;;chr4:109088940..109089037,-!p4@LEF1!0.95!7.82!LEF1;;chr7:99097863..99097936,-!p1@ZNF394!0.94!80.18!ZNF394;;chr19:49140609..49140643,-!p1@DBP!0.94!44.65!DBP;;chr2:157198916..157198978,-!p2@NR4A2!0.94!28.03!NR4A2;;chr5:172483347..172483407,+!p1@C5orf41!0.93!58.99!CREBRF;;chr2:214015111..214015179,-!p1@IKZF2!0.93!13.69!IKZF2;;chr4:109086403..109086421,-!p19@LEF1!0.93!7.50!LEF1;;chr17:38020516..38020544,-!p5@IKZF3!0.93!7.50!IKZF3;;chr12:72056773..72056796,+!p3@THAP2!0.91!9.45!THAP2;;chr7:50344144..50344157,+!p6@IKZF1!0.91!7.17!IKZF1;;chr19:54041574..54041589,+!p6@ZNF331!0.91!7.17!ZNF331;;chr3:71179699..71179744,-!p2@FOXP1!0.90!54.10!FOXP1;;chr14:65569101..65569119,-!p3@MAX!0.90!23.14!MAX;;chr19:22235279..22235301,+!p1@ZNF257!0.90!13.36!ZNF257;;chr12:133706975..133707013,-!p3@ZNF891!0.90!9.45!ZNF891;;chr13:74708246..74708264,-!p8@KLF12!0.90!7.82!KLF12;;chr11:67007548..67007610,+!p3@KDM2A!0.89!52.80!KDM2A;;chr7:21467674..21467727,+!p1@SP4!0.89!28.36!SP4;;chr4:109087906..109087928,-!p12@LEF1!0.89!6.84!LEF1;;chr3:18466787..18466839,-!p1@SATB1!0.88!30.64!SATB1;;chr9:73028332..73028385,-!p3@KLF9!0.88!23.79!KLF9;;chr7:50344289..50344323,+!p1@IKZF1!0.88!6.52!IKZF1;;chr3:18480173..18480189,-!p6@SATB1!0.88!6.52!SATB1;;chr4:149363494..149363543,-!p1@NR3C2!0.88!6.52!NR3C2;;chr4:149365827..149365870,-!p5@NR3C2!0.88!6.52!NR3C2;;chr1:37940170..37940190,+!p1@ZC3H12A!0.86!81.15!ZC3H12A;;chr10:104154246..104154347,+!p3@NFKB2!0.86!40.09!NFKB2;;chr9:3525867..3525902,-!p3@RFX3!0.86!22.49!RFX3;;chr19:12721790..12721810,+!p2@ZNF791!0.86!18.25!ZNF791;;chrY:21906761..21906810,-!p2@KDM5D!0.86!6.19!KDM5D;;chr10:135121763..135121783,+!p5@ZNF511!0.86!6.19!ZNF511;;chr2:214013461..214013517,-!p6@IKZF2!0.86!6.19!IKZF2;;chr4:109090106..109090124,-!p10@LEF1!0.86!6.19!LEF1;;chr6:106546834..106546850,+!p4@PRDM1!0.86!6.19!PRDM1;;chr7:50348268..50348366,+!p4@IKZF1!0.86!6.19!IKZF1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.85!339.61!NFKBIZ;;chr4:140005443..140005527,-!p2@ELF2!0.85!38.13!ELF2;;chr1:91487836..91487854,-!p3@ZNF644!0.85!14.34!ZNF644;;chr9:32550839..32550962,-!p3@TOPORS!0.84!15.64!TOPORS;;chr19:38085768..38085821,+!p1@ZNF540!0.84!9.13!ZNF540;;chr7:104654718..104654741,+!p3@MLL5!0.84!8.80!MLL5;;chr2:231090344..231090361,-!p3@SP110!0.84!5.87!SP110;;chr19:54041603..54041615,+!p10@ZNF331!0.84!5.87!ZNF331;;chr19:9546177..9546224,-!p1@ZNF266!0.83!43.67!ZNF266;;chr13:74708029..74708077,-!p2@KLF12!0.83!17.27!KLF12;;chr10:8096631..8096660,+!p1@GATA3!0.83!7.17!GATA3;;chr19:9879350..9879419,-!p2@ZNF846!0.82!12.39!ZNF846;;chr19:12405606..12405629,-!p2@ZNF44!0.82!11.41!ZNF44;;chr7:50343864..50343888,+!p7@IKZF1!0.82!5.54!IKZF1;;chr19:38086030..38086048,-!p2@ZNF571!0.82!5.54!ZNF571;;chr14:64971893..64971928,-!p8@ZBTB25!0.82!5.54!ZBTB25;;chr2:43453734..43453751,-!p1@ZFP36L2!0.81!633.27!ZFP36L2;;chr7:104654690..104654704,+!p2@MLL5!0.81!11.41!MLL5;;chr17:36861735..36861755,+!p4@MLLT6!0.81!9.78!MLLT6;;chr10:3824332..3824425,-!p4@KLF6!0.81!9.13!KLF6;;chr7:127032330..127032356,-!p3@ZNF800!0.81!7.17!ZNF800;;chr14:69262947..69262986,-!p3@ZFP36L1!0.81!6.84!ZFP36L1;;chr14:90085458..90085557,-!p1@FOXN3!0.80!59.97!FOXN3;;chr2:61108695..61108753,+!p1@REL!0.80!39.76!REL;;chr16:88519669..88519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ID3B;;chr19:47615426..47615439,-!p5@ZC3H4!0.31!3.59!ZC3H4;;chr15:31619871..31619884,+!p8@KLF13!0.31!2.28!KLF13;;chr9:86593238..86593252,-!p3@HNRNPK!0.31!1.96!HNRPK;;chr12:12764917..12764931,+!p4@CREBL2!0.31!1.63!CREBL2;;chr19:9649253..9649265,-!p3@ZNF426!0.31!1.63!ZNF426;;chr21:30671145..30671156,+!p8@BACH1!0.31!1.30!BACH1;;chr9:125667739..125667770,-!p4@RC3H2!0.31!1.30!RC3H2;;chr10:3824229..3824253,-!p7@KLF6!0.31!1.30!KLF6;;chr12:57914481..57914509,+!p5@MBD6!0.31!1.30!MBD6;;chr2:28615716..28615733,+!p1@FOSL2!0.30!85.39!FOSL2;;chr5:16465902..16465917,-!p1@ZNF622!0.30!42.37!ZNF622;;chr1:59165724..59165751,-!p1@MYSM1!0.30!40.74!MYSM1;;chr7:6746529..6746591,-!p1@ZNF12!0.30!24.12!ZNF12;;chr11:130184753..130184824,-!p1@ZBTB44!0.30!24.12!ZBTB44;;chr19:9731872..9731915,-!p1@ZNF561!0.30!23.14!ZNF561;;chr16:68119250..68119293,+!p2@NFATC3!0.30!13.36!NFATC3;;chr17:7382935..7382961,-!p2@ZBTB4!0.30!10.43!ZBTB4;;chr19:45004556..45004581,-!p1@ZNF180!0.30!10.10!ZNF180;;chr5:178286925..178287007,+!p1@ZNF354B!0.30!9.78!ZNF354B;;chr19:58193338..58193386,+!p1@ZNF551,p2@ZNF776!0.30!8.15!ZNF551;;chr18:72922777..72922808,+!p2@TSHZ1!0.30!7.82!TSHZ1;;chr13:74708504..74708549,-!p1@KLF12!0.30!7.50!KLF12;;chr19:58331073..58331084,+!p3@ZNF587!0.30!6.19!ZNF587;;chr2:148778570..148778589,+!p4@MBD5!0.30!4.89!MBD5;;chr12:104532004..104532033,-!p4@NFYB!0.30!4.24!NFYB;;chr6:126102254..126102289,+!p5@NCOA7!0.30!4.24!NCOA7;;chr19:8942909..8942953,-!p2@ZNF558!0.30!3.59!ZNF558;;chr6:42419514..42419606,-!p1@TRERF1!0.30!3.26!TRERF1;;chr7:99070527..99070542,+!p2@ZNF789!0.30!3.26!ZNF789;;chr19:35417798..35417842,+!p1@ZNF30!0.30!2.28!ZNF30;;chr16:30569604..30569629,-!p3@ZNF764!0.30!1.96!ZNF764;;chr16:89787436..89787450,+!p4@ZNF276!0.30!1.63!ZNF276;;chr20:44600199..44600219,-!p3@ZNF335!0.30!1.63!ZNF335;;chr7:106826626..106826630,+!p3@HBP1!0.30!1.30!HBP1;;chr16:88752889..88752921,-!p1@SNAI3!0.30!1.30!SNAI3;;chr17:46622229..46622257,-!p6@HOXB2!0.30!1.30!HOXB2;;chr14:75747296..75747329,+!p4@FOS!0.30!0.98!FOS;;chr14:99737588..99737617,-!p4@BCL11B!0.30!0.98!BCL11B;;chr14:99738106..99738117,-!p9@BCL11B!0.30!0.98!BCL11B;;chr17:37934188..37934202,-!p8@IKZF3!0.30!0.98!IKZF3;;chr17:37934268..37934277,-!p10@IKZF3!0.30!0.98!IKZF3;;chr17:37934392..37934398,-!p11@IKZF3!0.30!0.98!IKZF3;;chr17:41738684..41738704,-!p2@MEOX1!0.30!0.98!MEOX1;;chr18:46477549..46477578,-!p7@SMAD7!0.30!0.98!SMAD7;;chr19:36204309..36204335,+!p1@ZBTB32!0.30!0.98!ZBTB32;;chr1:61542891..61542920,+!p12@NFIA!0.30!0.98!NFIA;;chr1:8586084..8586100,-!p20@RERE!0.30!0.98!RERE;;chr21:36421401..36421414,-!p16@RUNX1!0.30!0.98!RUNX1;;chr10:135121790..135121801,+!p7@ZNF511!0.30!0.98!ZNF511;;chr10:3823938..3823954,-!p13@KLF6!0.30!0.98!KLF6;;chr10:3824206..3824226,-!p10@KLF6!0.30!0.98!KLF6;;chr10:3824309..3824321,-!p15@KLF6!0.30!0.98!KLF6;;chr11:113930477..113930488,+!p4@ZBTB16!0.30!0.98!ZBTB16;;chr12:57914700..57914737,+!p7@MBD6!0.30!0.98!MBD6;;chr13:41593392..41593403,-!p7@ELF1!0.30!0.98!ELF1;;chr2:157186741..157186759,-!p25@NR4A2!0.30!0.98!NR4A2;;chr2:157189298..157189305,-!p23@NR4A2!0.30!0.98!NR4A2;;chr2:157189317..157189325,-!p8@NR4A2!0.30!0.98!NR4A2;;chr2:214016899..214016926,-!p10@IKZF2!0.30!0.98!IKZF2;;chr2:214017053..214017065,-!p16@IKZF2!0.30!0.98!IKZF2;;chr2:242556880..242556899,-!p5@THAP4!0.30!0.98!THAP4;;chr2:242556900..242556916,-!p6@THAP4!0.30!0.98!THAP4;;chr3:101546889..101546895,+!p6@NFKBIZ!0.30!0.98!NFKBIZ;;chr3:101546918..101546929,+!p4@NFKBIZ!0.30!0.98!NFKBIZ;;chr3:18463329..18463336,-!p15@SATB1!0.30!0.98!SATB1;;chr3:18480192..18480198,-!p22@SATB1!0.30!0.98!SATB1;;chr3:18486740..18486760,-!p10@SATB1!0.30!0.98!SATB1;;chr3:71179687..71179696,-!p54@FOXP1!0.30!0.98!FOXP1;;chr3:71355138..71355149,-!p41@FOXP1!0.30!0.98!FOXP1;;chr4:109087991..109087996,-!p50@LEF1!0.30!0.98!LEF1;;chr4:109089050..109089067,-!p26@LEF1!0.30!0.98!LEF1;;chr4:109089095..109089144,-!p6@LEF1!0.30!0.98!LEF1;;chr4:109089515..109089523,-!p31@LEF1!0.30!0.98!LEF1;;chr4:109089820..109089825,-!p35@LEF1!0.30!0.98!LEF1;;chr4:149363662..149363688,-!p6@NR3C2!0.30!0.98!NR3C2;;
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|comment=Previously: CD4-positiveCD25-positiveCD45RA+ memory regulatory T cells, donor1. TODO: full classification
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg38.nobarcode.ctss.bed.gz
|id=FF:11780-124A7
|is_a=CL:0002677;;EFO:0002091;;FF:0000002;;FF:0000210
|is_a=CL:0002677;;EFO:0002091;;FF:0000002;;FF:0000210
|is_obsolete=
|library_id=CNhs13238
|library_id_phase_based=2:CNhs13238
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11780
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11780
|name=CD4+CD25+CD45RA+ naive regulatory T cells, donor1
|namespace=
|namespace=
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs13238,LSID1006,release012,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=124
|rna_catalog_number=
|rna_concentration=0.09014
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=1
|rna_od260/230=0.62
|rna_od260/280=1.97
|rna_position=A7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=124A7
|rna_weight_ug=0.9014
|sample_age=25
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=T cell
|sample_collaboration=Michael Rehli (University of Regensberg)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.19718615211081e-233!GO:0043227;membrane-bound organelle;2.37366393863356e-210!GO:0043231;intracellular membrane-bound organelle;5.20798910570098e-210!GO:0043226;organelle;9.75957363704467e-195!GO:0043229;intracellular organelle;4.51541837409794e-194!GO:0005737;cytoplasm;2.95843133798886e-125!GO:0005634;nucleus;4.57754716478243e-118!GO:0044422;organelle part;5.58770573200981e-115!GO:0044446;intracellular organelle part;2.93198744337644e-113!GO:0043170;macromolecule metabolic process;2.53900457775435e-105!GO:0044237;cellular metabolic process;7.13165571827657e-104!GO:0044238;primary metabolic process;3.40749323558007e-99!GO:0032991;macromolecular complex;5.80718993236546e-95!GO:0030529;ribonucleoprotein complex;3.94407744840877e-93!GO:0044444;cytoplasmic part;1.43864044683053e-86!GO:0003723;RNA binding;3.97908136849499e-83!GO:0044428;nuclear part;4.20076197094685e-82!GO:0043283;biopolymer metabolic process;1.03236393677219e-76!GO:0010467;gene expression;5.58890769318584e-73!GO:0043233;organelle lumen;1.12094689623262e-70!GO:0031974;membrane-enclosed lumen;1.12094689623262e-70!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.24761264779351e-66!GO:0006396;RNA processing;1.22061062653177e-58!GO:0005739;mitochondrion;2.3187999302419e-57!GO:0003676;nucleic acid binding;2.05098492525232e-53!GO:0006412;translation;7.69888441748774e-53!GO:0005840;ribosome;6.69746383913766e-52!GO:0031981;nuclear lumen;7.68093724907063e-51!GO:0016071;mRNA metabolic process;2.08896600205143e-47!GO:0003735;structural constituent of ribosome;9.37177505293916e-45!GO:0043234;protein complex;1.7151521173279e-44!GO:0019538;protein metabolic process;3.03668899078947e-44!GO:0044267;cellular protein metabolic process;2.2635353849781e-43!GO:0033036;macromolecule localization;3.01564209798579e-43!GO:0005515;protein binding;4.93659577581337e-43!GO:0016070;RNA metabolic process;1.33276664050463e-42!GO:0044260;cellular macromolecule metabolic process;2.1024492495812e-42!GO:0015031;protein transport;6.06169696230859e-42!GO:0008380;RNA splicing;1.10319016708868e-41!GO:0044429;mitochondrial part;9.14723493619785e-41!GO:0006397;mRNA processing;4.38306985320958e-40!GO:0033279;ribosomal subunit;5.18709511885128e-40!GO:0045184;establishment of protein localization;8.07995258008907e-40!GO:0008104;protein localization;1.8044483171054e-39!GO:0009059;macromolecule biosynthetic process;2.59468496988008e-39!GO:0031967;organelle envelope;4.28684583856682e-39!GO:0031975;envelope;9.46351924708739e-39!GO:0031090;organelle membrane;1.47188759026224e-36!GO:0006259;DNA metabolic process;2.65342203608976e-32!GO:0005681;spliceosome;4.08351703535935e-32!GO:0005829;cytosol;4.37172013375093e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.42052067436647e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.42909562145993e-31!GO:0005654;nucleoplasm;2.15087312931305e-31!GO:0044249;cellular biosynthetic process;1.92859723217943e-30!GO:0009058;biosynthetic process;1.76628769612521e-29!GO:0046907;intracellular transport;5.53107065721046e-29!GO:0065003;macromolecular complex assembly;3.24446790684393e-28!GO:0006886;intracellular protein transport;4.60869505936217e-28!GO:0016043;cellular component organization and biogenesis;1.03667889743226e-26!GO:0044445;cytosolic part;1.26913425601e-26!GO:0005740;mitochondrial envelope;5.17965865875889e-26!GO:0006512;ubiquitin cycle;9.5597875777463e-26!GO:0044451;nucleoplasm part;2.64872256429702e-25!GO:0031966;mitochondrial membrane;5.09177497794445e-25!GO:0019866;organelle inner membrane;6.47596759746332e-25!GO:0022607;cellular component assembly;1.2882106063701e-24!GO:0006996;organelle organization and biogenesis;4.98237523359943e-23!GO:0000166;nucleotide binding;6.67449503586108e-23!GO:0005743;mitochondrial inner membrane;1.69350481402279e-22!GO:0015935;small ribosomal subunit;1.98783028132397e-21!GO:0005730;nucleolus;5.00238398547717e-21!GO:0022618;protein-RNA complex assembly;4.8603580052584e-20!GO:0051641;cellular localization;7.04048088883685e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.37314399238631e-20!GO:0016462;pyrophosphatase activity;8.38051635801761e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.0613483598185e-19!GO:0015934;large ribosomal subunit;1.11913945777088e-19!GO:0017111;nucleoside-triphosphatase activity;1.50715682535131e-19!GO:0051649;establishment of cellular localization;1.74040093725521e-19!GO:0006119;oxidative phosphorylation;2.55535469065412e-19!GO:0016874;ligase activity;5.2029041335461e-19!GO:0044455;mitochondrial membrane part;9.20331220765929e-19!GO:0044265;cellular macromolecule catabolic process;9.59522966899336e-19!GO:0043228;non-membrane-bound organelle;9.59522966899336e-19!GO:0043232;intracellular non-membrane-bound organelle;9.59522966899336e-19!GO:0016604;nuclear body;2.70752835624798e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;4.87994473730214e-18!GO:0019941;modification-dependent protein catabolic process;5.23460123279278e-18!GO:0043632;modification-dependent macromolecule catabolic process;5.23460123279278e-18!GO:0031980;mitochondrial lumen;5.23460123279278e-18!GO:0005759;mitochondrial matrix;5.23460123279278e-18!GO:0044257;cellular protein catabolic process;7.71983409475073e-18!GO:0006511;ubiquitin-dependent protein catabolic process;8.1743844155192e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;8.62498940288529e-18!GO:0043285;biopolymer catabolic process;1.76378598912561e-17!GO:0043412;biopolymer modification;1.85075545646321e-17!GO:0008135;translation factor activity, nucleic acid binding;2.18489384453577e-17!GO:0006323;DNA packaging;4.34554476957398e-17!GO:0006605;protein targeting;4.43436468643537e-17!GO:0051276;chromosome organization and biogenesis;7.33691619087219e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.45414266108253e-17!GO:0012501;programmed cell death;8.32639068102292e-17!GO:0006915;apoptosis;8.57380483022264e-17!GO:0008134;transcription factor binding;1.18110900128977e-16!GO:0008219;cell death;5.10277827931543e-16!GO:0016265;death;5.10277827931543e-16!GO:0006974;response to DNA damage stimulus;5.39390800287988e-16!GO:0006913;nucleocytoplasmic transport;1.15283041342921e-15!GO:0050794;regulation of cellular process;1.50586872122802e-15!GO:0051169;nuclear transport;1.979348086764e-15!GO:0016607;nuclear speck;1.97970885173583e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.35009612831766e-15!GO:0032553;ribonucleotide binding;2.43858950156162e-15!GO:0032555;purine ribonucleotide binding;2.43858950156162e-15!GO:0006457;protein folding;2.58254424160145e-15!GO:0009057;macromolecule catabolic process;2.87751799352427e-15!GO:0042623;ATPase activity, coupled;4.04118835062019e-15!GO:0006464;protein modification process;4.52186620342838e-15!GO:0005746;mitochondrial respiratory chain;5.01763238342835e-15!GO:0016887;ATPase activity;6.30929454999375e-15!GO:0019222;regulation of metabolic process;6.76001078744568e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;7.35432693953535e-15!GO:0000375;RNA splicing, via transesterification reactions;7.35432693953535e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.35432693953535e-15!GO:0017076;purine nucleotide binding;1.27337159444745e-14!GO:0043687;post-translational protein modification;2.74981077447403e-14!GO:0006281;DNA repair;4.89396272888886e-14!GO:0031965;nuclear membrane;1.59434416602965e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.62515809662134e-13!GO:0003954;NADH dehydrogenase activity;1.62515809662134e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.62515809662134e-13!GO:0005635;nuclear envelope;1.64995370616101e-13!GO:0030163;protein catabolic process;2.20006819698792e-13!GO:0031323;regulation of cellular metabolic process;2.22633768750465e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.42623005857545e-13!GO:0005694;chromosome;3.0226468366293e-13!GO:0008270;zinc ion binding;3.08493799631293e-13!GO:0006350;transcription;4.76422107827804e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.80805763660392e-13!GO:0042254;ribosome biogenesis and assembly;5.10616839788787e-13!GO:0003743;translation initiation factor activity;6.29221079076662e-13!GO:0004386;helicase activity;7.22132865088607e-13!GO:0006413;translational initiation;1.12178990929442e-12!GO:0012505;endomembrane system;1.45528571299322e-12!GO:0005524;ATP binding;1.50461781340745e-12!GO:0005761;mitochondrial ribosome;1.92956472487151e-12!GO:0000313;organellar ribosome;1.92956472487151e-12!GO:0044453;nuclear membrane part;2.32729945013332e-12!GO:0016568;chromatin modification;3.43027052194153e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.96237592718422e-12!GO:0042773;ATP synthesis coupled electron transport;3.96237592718422e-12!GO:0065004;protein-DNA complex assembly;4.86092994723642e-12!GO:0044248;cellular catabolic process;5.23939442167995e-12!GO:0032559;adenyl ribonucleotide binding;5.51036629875601e-12!GO:0008026;ATP-dependent helicase activity;6.33011512605712e-12!GO:0017038;protein import;9.73333752380272e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.0457624469606e-11!GO:0045271;respiratory chain complex I;1.0457624469606e-11!GO:0005747;mitochondrial respiratory chain complex I;1.0457624469606e-11!GO:0010468;regulation of gene expression;1.2220495863124e-11!GO:0007049;cell cycle;1.35594646646699e-11!GO:0006333;chromatin assembly or disassembly;1.43350931276075e-11!GO:0044427;chromosomal part;2.65771245842853e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.93527021554725e-11!GO:0030554;adenyl nucleotide binding;3.22625999360556e-11!GO:0042981;regulation of apoptosis;3.71723612644673e-11!GO:0006446;regulation of translational initiation;3.77237610042002e-11!GO:0005643;nuclear pore;3.96160999304375e-11!GO:0051082;unfolded protein binding;4.04574995613532e-11!GO:0043067;regulation of programmed cell death;5.5698681676839e-11!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.2359399260782e-11!GO:0006403;RNA localization;6.5380080656045e-11!GO:0050657;nucleic acid transport;6.74979034699504e-11!GO:0051236;establishment of RNA localization;6.74979034699504e-11!GO:0050658;RNA transport;6.74979034699504e-11!GO:0032774;RNA biosynthetic process;1.03788345295105e-10!GO:0006351;transcription, DNA-dependent;1.43387046470136e-10!GO:0008639;small protein conjugating enzyme activity;1.50258760834231e-10!GO:0003712;transcription cofactor activity;1.58455876008944e-10!GO:0004842;ubiquitin-protein ligase activity;1.98090201497002e-10!GO:0019787;small conjugating protein ligase activity;4.66439544496094e-10!GO:0050789;regulation of biological process;5.55618514588307e-10!GO:0046914;transition metal ion binding;7.48981451409952e-10!GO:0016072;rRNA metabolic process;7.78268323387625e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.07917221866245e-09!GO:0009719;response to endogenous stimulus;1.10396292412479e-09!GO:0051186;cofactor metabolic process;1.15748943289863e-09!GO:0006364;rRNA processing;1.19394645868996e-09!GO:0045449;regulation of transcription;1.47309775752803e-09!GO:0000785;chromatin;1.68189958516554e-09!GO:0048193;Golgi vesicle transport;1.73812391962327e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.7850620989931e-09!GO:0051028;mRNA transport;3.35292352403159e-09!GO:0006399;tRNA metabolic process;3.52687424474762e-09!GO:0065002;intracellular protein transport across a membrane;4.05729245044306e-09!GO:0046930;pore complex;4.72781411155578e-09!GO:0048770;pigment granule;5.48618566881675e-09!GO:0042470;melanosome;5.48618566881675e-09!GO:0043566;structure-specific DNA binding;5.58421242774191e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.99440950645113e-09!GO:0030532;small nuclear ribonucleoprotein complex;6.7901595155737e-09!GO:0022402;cell cycle process;1.17310304260425e-08!GO:0006355;regulation of transcription, DNA-dependent;1.23677569557381e-08!GO:0019829;cation-transporting ATPase activity;1.54517568275278e-08!GO:0006334;nucleosome assembly;2.06994438510001e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.21928084120605e-08!GO:0003677;DNA binding;2.33217179677316e-08!GO:0009259;ribonucleotide metabolic process;2.78765789909326e-08!GO:0051726;regulation of cell cycle;3.00480737479157e-08!GO:0031497;chromatin assembly;3.23701421438209e-08!GO:0003713;transcription coactivator activity;3.97278412167128e-08!GO:0009260;ribonucleotide biosynthetic process;3.99517931799518e-08!GO:0000074;regulation of progression through cell cycle;4.42638468650776e-08!GO:0003697;single-stranded DNA binding;5.19617643443014e-08!GO:0051170;nuclear import;6.05430094868688e-08!GO:0016881;acid-amino acid ligase activity;6.16217674712297e-08!GO:0006164;purine nucleotide biosynthetic process;1.01467338533498e-07!GO:0006606;protein import into nucleus;1.12096703028495e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.12096703028495e-07!GO:0008565;protein transporter activity;1.1975608513792e-07!GO:0006732;coenzyme metabolic process;1.35588361583908e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.51235499960055e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.63219606833131e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.64740278630333e-07!GO:0009060;aerobic respiration;1.70387149545296e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.99010948924122e-07!GO:0006163;purine nucleotide metabolic process;2.41933884086892e-07!GO:0016787;hydrolase activity;2.44082860385788e-07!GO:0000151;ubiquitin ligase complex;3.12918096160356e-07!GO:0006366;transcription from RNA polymerase II promoter;3.69137201311014e-07!GO:0016779;nucleotidyltransferase activity;3.87167412847553e-07!GO:0009150;purine ribonucleotide metabolic process;3.94749969059398e-07!GO:0005794;Golgi apparatus;4.00023531549091e-07!GO:0004298;threonine endopeptidase activity;7.13660590937952e-07!GO:0006793;phosphorus metabolic process;7.14970380904314e-07!GO:0006796;phosphate metabolic process;7.14970380904314e-07!GO:0015986;ATP synthesis coupled proton transport;7.46965720780074e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.46965720780074e-07!GO:0051168;nuclear export;7.60564329308561e-07!GO:0032446;protein modification by small protein conjugation;8.37190792933232e-07!GO:0000245;spliceosome assembly;9.23048255205363e-07!GO:0016563;transcription activator activity;1.16881755343638e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.26343135900075e-06!GO:0045333;cellular respiration;1.32766725923905e-06!GO:0006260;DNA replication;1.48748679298967e-06!GO:0005768;endosome;1.6588330621903e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.67785793924384e-06!GO:0007005;mitochondrion organization and biogenesis;1.95428050567559e-06!GO:0016740;transferase activity;1.97402143236574e-06!GO:0043069;negative regulation of programmed cell death;2.04077772465293e-06!GO:0016567;protein ubiquitination;2.04077772465293e-06!GO:0044432;endoplasmic reticulum part;2.08792567870916e-06!GO:0016564;transcription repressor activity;2.1119838802521e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.21627720985566e-06!GO:0003724;RNA helicase activity;2.21627720985566e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.45681734982793e-06!GO:0045786;negative regulation of progression through cell cycle;2.8451633524937e-06!GO:0016192;vesicle-mediated transport;2.84622510996914e-06!GO:0043066;negative regulation of apoptosis;2.92182871731973e-06!GO:0006916;anti-apoptosis;3.40707388989507e-06!GO:0006754;ATP biosynthetic process;3.5284242789962e-06!GO:0006753;nucleoside phosphate metabolic process;3.5284242789962e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.5284242789962e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.5284242789962e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.74028263646639e-06!GO:0015399;primary active transmembrane transporter activity;3.74028263646639e-06!GO:0051188;cofactor biosynthetic process;3.80989676284138e-06!GO:0009056;catabolic process;4.18313383723318e-06!GO:0045259;proton-transporting ATP synthase complex;4.2014370713814e-06!GO:0007243;protein kinase cascade;4.20317759489042e-06!GO:0048523;negative regulation of cellular process;4.22930117591679e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.13944786295042e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.46393922481574e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.46393922481574e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.60143477517143e-06!GO:0004812;aminoacyl-tRNA ligase activity;5.60143477517143e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.60143477517143e-06!GO:0009141;nucleoside triphosphate metabolic process;5.94384543925523e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.03006770288419e-06!GO:0006888;ER to Golgi vesicle-mediated transport;6.0489326872735e-06!GO:0016310;phosphorylation;6.35599524434362e-06!GO:0065009;regulation of a molecular function;6.35599524434362e-06!GO:0009055;electron carrier activity;6.97313342917818e-06!GO:0065007;biological regulation;6.99832331981127e-06!GO:0046034;ATP metabolic process;7.66892504708165e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.67341833479401e-06!GO:0009144;purine nucleoside triphosphate metabolic process;7.67341833479401e-06!GO:0031324;negative regulation of cellular metabolic process;8.16527017860854e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.00003167582552e-05!GO:0005783;endoplasmic reticulum;1.03087588856528e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.10690921289757e-05!GO:0006401;RNA catabolic process;1.11529968393044e-05!GO:0019899;enzyme binding;1.21105148618121e-05!GO:0006099;tricarboxylic acid cycle;1.23422609289057e-05!GO:0046356;acetyl-CoA catabolic process;1.23422609289057e-05!GO:0051246;regulation of protein metabolic process;1.2652320702913e-05!GO:0043038;amino acid activation;1.28447893916524e-05!GO:0006418;tRNA aminoacylation for protein translation;1.28447893916524e-05!GO:0043039;tRNA aminoacylation;1.28447893916524e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.44907516678138e-05!GO:0005789;endoplasmic reticulum membrane;1.6341192786993e-05!GO:0006084;acetyl-CoA metabolic process;1.72712371217741e-05!GO:0006613;cotranslational protein targeting to membrane;2.57320984081273e-05!GO:0008186;RNA-dependent ATPase activity;3.29241943759102e-05!GO:0006402;mRNA catabolic process;3.45385547177915e-05!GO:0009108;coenzyme biosynthetic process;3.69319950749302e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.42592909465456e-05!GO:0005525;GTP binding;4.61054660563732e-05!GO:0003899;DNA-directed RNA polymerase activity;5.33764015034016e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.48392102926781e-05!GO:0043492;ATPase activity, coupled to movement of substances;5.67147871970024e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;5.80789045507925e-05!GO:0016363;nuclear matrix;7.12198941945839e-05!GO:0000786;nucleosome;7.75714314811718e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;7.76970144922237e-05!GO:0003690;double-stranded DNA binding;8.379793152484e-05!GO:0009109;coenzyme catabolic process;8.71596952886565e-05!GO:0048519;negative regulation of biological process;9.50283211397005e-05!GO:0005793;ER-Golgi intermediate compartment;9.97043002144074e-05!GO:0004004;ATP-dependent RNA helicase activity;0.000106256574918859!GO:0008168;methyltransferase activity;0.000106256574918859!GO:0030120;vesicle coat;0.000106256574918859!GO:0030662;coated vesicle membrane;0.000106256574918859!GO:0016741;transferase activity, transferring one-carbon groups;0.000111843274711778!GO:0005762;mitochondrial large ribosomal subunit;0.000111843274711778!GO:0000315;organellar large ribosomal subunit;0.000111843274711778!GO:0006261;DNA-dependent DNA replication;0.000115344222504132!GO:0006917;induction of apoptosis;0.000126800371971273!GO:0016481;negative regulation of transcription;0.000131060235888971!GO:0016251;general RNA polymerase II transcription factor activity;0.00013456019235903!GO:0043623;cellular protein complex assembly;0.000135012266004257!GO:0003924;GTPase activity;0.000142766803802762!GO:0009892;negative regulation of metabolic process;0.000165549829678567!GO:0006352;transcription initiation;0.000168771357927703!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000174906040204267!GO:0006461;protein complex assembly;0.00017965772537434!GO:0012502;induction of programmed cell death;0.00018062304779905!GO:0008234;cysteine-type peptidase activity;0.000185321310833963!GO:0008033;tRNA processing;0.000192921634202413!GO:0043065;positive regulation of apoptosis;0.00020270141157236!GO:0003729;mRNA binding;0.000203245225471302!GO:0006752;group transfer coenzyme metabolic process;0.00020695673386418!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000210219616604842!GO:0000314;organellar small ribosomal subunit;0.00022400727176647!GO:0005763;mitochondrial small ribosomal subunit;0.00022400727176647!GO:0051187;cofactor catabolic process;0.000226475592581786!GO:0006417;regulation of translation;0.00024473865758034!GO:0048475;coated membrane;0.000254358469881721!GO:0030117;membrane coat;0.000254358469881721!GO:0005813;centrosome;0.000273349476354517!GO:0043021;ribonucleoprotein binding;0.00027659309167257!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00027868105186669!GO:0043681;protein import into mitochondrion;0.000283277924766779!GO:0043068;positive regulation of programmed cell death;0.00029138653196845!GO:0006612;protein targeting to membrane;0.000306809740287542!GO:0051427;hormone receptor binding;0.000318523402848406!GO:0005769;early endosome;0.000329121341712428!GO:0008654;phospholipid biosynthetic process;0.000371019138762244!GO:0000278;mitotic cell cycle;0.000374222575810331!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000400777444674275!GO:0008632;apoptotic program;0.000410491459516761!GO:0005770;late endosome;0.000445189208350745!GO:0004527;exonuclease activity;0.000458892503108313!GO:0007242;intracellular signaling cascade;0.000496765879207378!GO:0005885;Arp2/3 protein complex;0.000507742089825996!GO:0030384;phosphoinositide metabolic process;0.000538335659595616!GO:0032561;guanyl ribonucleotide binding;0.000539100604028929!GO:0019001;guanyl nucleotide binding;0.000539100604028929!GO:0035257;nuclear hormone receptor binding;0.000574921502471324!GO:0046489;phosphoinositide biosynthetic process;0.000593302828692952!GO:0006611;protein export from nucleus;0.000602089695927945!GO:0060090;molecular adaptor activity;0.000616329729914184!GO:0006310;DNA recombination;0.000620185995196464!GO:0031326;regulation of cellular biosynthetic process;0.00068364980098637!GO:0006383;transcription from RNA polymerase III promoter;0.000685294047573634!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000716716024493048!GO:0044431;Golgi apparatus part;0.000732612398006072!GO:0031072;heat shock protein binding;0.000732612398006072!GO:0044452;nucleolar part;0.000756074515896611!GO:0006891;intra-Golgi vesicle-mediated transport;0.0008351856442766!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000841937588805773!GO:0005667;transcription factor complex;0.000894904854072035!GO:0004674;protein serine/threonine kinase activity;0.000902016784477009!GO:0004518;nuclease activity;0.000903110779412212!GO:0016197;endosome transport;0.000991298245321148!GO:0044440;endosomal part;0.00106991327096656!GO:0010008;endosome membrane;0.00106991327096656!GO:0019843;rRNA binding;0.00107298220665058!GO:0051087;chaperone binding;0.00112504048672075!GO:0005815;microtubule organizing center;0.00112957456981978!GO:0007264;small GTPase mediated signal transduction;0.00119190041943037!GO:0006414;translational elongation;0.00122069413850504!GO:0003714;transcription corepressor activity;0.00125646708805871!GO:0006405;RNA export from nucleus;0.00146467755825283!GO:0006607;NLS-bearing substrate import into nucleus;0.00177093665353923!GO:0006338;chromatin remodeling;0.00177724798409543!GO:0051539;4 iron, 4 sulfur cluster binding;0.0017782151277802!GO:0005684;U2-dependent spliceosome;0.00189477591057317!GO:0019783;small conjugating protein-specific protease activity;0.00215670656235143!GO:0003746;translation elongation factor activity;0.00217979452232321!GO:0046474;glycerophospholipid biosynthetic process;0.00217979452232321!GO:0009117;nucleotide metabolic process;0.00221064731111931!GO:0006818;hydrogen transport;0.00222400901065731!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00223455681672645!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00223455681672645!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00223455681672645!GO:0007006;mitochondrial membrane organization and biogenesis;0.00230552025685234!GO:0015992;proton transport;0.00238933909073225!GO:0032259;methylation;0.00246715412996696!GO:0031625;ubiquitin protein ligase binding;0.00246715412996696!GO:0003678;DNA helicase activity;0.00254546851571517!GO:0005773;vacuole;0.0027203285209879!GO:0009889;regulation of biosynthetic process;0.00273347192549456!GO:0050790;regulation of catalytic activity;0.00283083388081053!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0029112171052429!GO:0004532;exoribonuclease activity;0.0029749927695495!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0029749927695495!GO:0004843;ubiquitin-specific protease activity;0.00303095796357806!GO:0022890;inorganic cation transmembrane transporter activity;0.00310334798416787!GO:0015631;tubulin binding;0.00314057434463811!GO:0046966;thyroid hormone receptor binding;0.00317912029446901!GO:0048500;signal recognition particle;0.00327439505328872!GO:0006650;glycerophospholipid metabolic process;0.00342742088859103!GO:0051252;regulation of RNA metabolic process;0.00349060980247746!GO:0019867;outer membrane;0.00352528767498489!GO:0005637;nuclear inner membrane;0.00369478845020379!GO:0007265;Ras protein signal transduction;0.00369813262322203!GO:0016584;nucleosome positioning;0.00373144556006219!GO:0006626;protein targeting to mitochondrion;0.00378074603807387!GO:0006839;mitochondrial transport;0.00389523831558452!GO:0005741;mitochondrial outer membrane;0.0040422526692243!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00410889997184255!GO:0008022;protein C-terminus binding;0.00418820610716769!GO:0048471;perinuclear region of cytoplasm;0.00436089933605249!GO:0045892;negative regulation of transcription, DNA-dependent;0.00447515817960774!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00449035051915512!GO:0031968;organelle outer membrane;0.00461600426546831!GO:0003711;transcription elongation regulator activity;0.0047301155532795!GO:0006289;nucleotide-excision repair;0.00481779251044853!GO:0005669;transcription factor TFIID complex;0.00491576754471532!GO:0004221;ubiquitin thiolesterase activity;0.00497065041801226!GO:0008312;7S RNA binding;0.0051137911715743!GO:0007050;cell cycle arrest;0.00524917135470202!GO:0042101;T cell receptor complex;0.00525030879338461!GO:0016859;cis-trans isomerase activity;0.00528924562970961!GO:0005657;replication fork;0.00530538747850182!GO:0033116;ER-Golgi intermediate compartment membrane;0.00530649580002951!GO:0043488;regulation of mRNA stability;0.00542703487466581!GO:0043487;regulation of RNA stability;0.00542703487466581!GO:0051789;response to protein stimulus;0.00559226873524679!GO:0006986;response to unfolded protein;0.00559226873524679!GO:0043414;biopolymer methylation;0.00559964346073426!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00570807056782397!GO:0008047;enzyme activator activity;0.00583020348839749!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0058812465883126!GO:0015002;heme-copper terminal oxidase activity;0.0058812465883126!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0058812465883126!GO:0004129;cytochrome-c oxidase activity;0.0058812465883126!GO:0051059;NF-kappaB binding;0.00609940244591595!GO:0000139;Golgi membrane;0.00610666231253664!GO:0005048;signal sequence binding;0.0061641250851691!GO:0008408;3'-5' exonuclease activity;0.00617307391138561!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00628929991638062!GO:0045047;protein targeting to ER;0.00628929991638062!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00631724249473762!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00631724249473762!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00672149577081555!GO:0048487;beta-tubulin binding;0.00691641553112852!GO:0001667;ameboidal cell migration;0.00708047216560804!GO:0032027;myosin light chain binding;0.00708047216560804!GO:0030518;steroid hormone receptor signaling pathway;0.00730016904918637!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00742869264214999!GO:0005083;small GTPase regulator activity;0.00777173397441938!GO:0000323;lytic vacuole;0.00790865629756345!GO:0005764;lysosome;0.00790865629756345!GO:0006302;double-strand break repair;0.00790865629756345!GO:0042110;T cell activation;0.00837000518352086!GO:0005798;Golgi-associated vesicle;0.00840229136477497!GO:0030695;GTPase regulator activity;0.00867715560251563!GO:0008017;microtubule binding;0.00876484903354588!GO:0042802;identical protein binding;0.00876484903354588!GO:0050811;GABA receptor binding;0.00883072595123899!GO:0003684;damaged DNA binding;0.00893886578934737!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00896744549603393!GO:0009116;nucleoside metabolic process;0.00899418732106433!GO:0009615;response to virus;0.00923091468822867!GO:0000178;exosome (RNase complex);0.00926563996574346!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00927489673728494!GO:0022403;cell cycle phase;0.00986665691613769!GO:0051540;metal cluster binding;0.00990198259027576!GO:0051536;iron-sulfur cluster binding;0.00990198259027576!GO:0030880;RNA polymerase complex;0.0101518945263578!GO:0006497;protein amino acid lipidation;0.0101622708895653!GO:0016272;prefoldin complex;0.0101622708895653!GO:0030521;androgen receptor signaling pathway;0.0102302540088836!GO:0005070;SH3/SH2 adaptor activity;0.010339326133305!GO:0006376;mRNA splice site selection;0.010339326133305!GO:0000389;nuclear mRNA 3'-splice site recognition;0.010339326133305!GO:0032508;DNA duplex unwinding;0.0104181571456676!GO:0032392;DNA geometric change;0.0104181571456676!GO:0015980;energy derivation by oxidation of organic compounds;0.010490662125827!GO:0006506;GPI anchor biosynthetic process;0.0107081288601807!GO:0005774;vacuolar membrane;0.0109679791071997!GO:0008094;DNA-dependent ATPase activity;0.0111176094575812!GO:0046467;membrane lipid biosynthetic process;0.0111257775660823!GO:0022415;viral reproductive process;0.0111530284095208!GO:0047485;protein N-terminus binding;0.0111812436800435!GO:0001772;immunological synapse;0.0113192981329494!GO:0019901;protein kinase binding;0.0117857807703257!GO:0008624;induction of apoptosis by extracellular signals;0.0119571330898684!GO:0016790;thiolester hydrolase activity;0.0123790217776459!GO:0006505;GPI anchor metabolic process;0.0127749119877568!GO:0048522;positive regulation of cellular process;0.0127983029286282!GO:0043621;protein self-association;0.013028130244647!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0133183928312562!GO:0043022;ribosome binding;0.0135093531208955!GO:0050852;T cell receptor signaling pathway;0.0138198640288204!GO:0008139;nuclear localization sequence binding;0.014138850292785!GO:0009967;positive regulation of signal transduction;0.014283121774893!GO:0016853;isomerase activity;0.0145737606667352!GO:0000119;mediator complex;0.0146129512000066!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0148292823568661!GO:0008276;protein methyltransferase activity;0.0150281623934253!GO:0003682;chromatin binding;0.0160939689278428!GO:0000049;tRNA binding;0.0166426961125815!GO:0006595;polyamine metabolic process;0.0168422221582539!GO:0008097;5S rRNA binding;0.0171832701253534!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.01723491506731!GO:0000428;DNA-directed RNA polymerase complex;0.01723491506731!GO:0030522;intracellular receptor-mediated signaling pathway;0.01725672256978!GO:0015630;microtubule cytoskeleton;0.0176100851034794!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0176684406192395!GO:0019900;kinase binding;0.0177643739281351!GO:0051098;regulation of binding;0.0178062787377385!GO:0009165;nucleotide biosynthetic process;0.0179894909454409!GO:0031461;cullin-RING ubiquitin ligase complex;0.0180160732352989!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.018056480543244!GO:0000175;3'-5'-exoribonuclease activity;0.0182313788521463!GO:0000738;DNA catabolic process, exonucleolytic;0.0184764324318495!GO:0006914;autophagy;0.0184764324318495!GO:0051251;positive regulation of lymphocyte activation;0.0186662525345616!GO:0031902;late endosome membrane;0.0188744221460652!GO:0006354;RNA elongation;0.0190418615370875!GO:0005665;DNA-directed RNA polymerase II, core complex;0.01984889449049!GO:0005869;dynactin complex;0.0200636040467248!GO:0051052;regulation of DNA metabolic process;0.0202457636965991!GO:0032200;telomere organization and biogenesis;0.0204353981040206!GO:0000723;telomere maintenance;0.0204353981040206!GO:0030658;transport vesicle membrane;0.0204353981040206!GO:0007004;telomere maintenance via telomerase;0.0204464604295942!GO:0044437;vacuolar part;0.0205364506906182!GO:0005765;lysosomal membrane;0.0205851754276894!GO:0000059;protein import into nucleus, docking;0.020890104567523!GO:0044438;microbody part;0.0214310985981528!GO:0044439;peroxisomal part;0.0214310985981528!GO:0051090;regulation of transcription factor activity;0.0214557620202026!GO:0051301;cell division;0.022723827904595!GO:0016585;chromatin remodeling complex;0.0228872031508678!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0232979507202674!GO:0010257;NADH dehydrogenase complex assembly;0.0232979507202674!GO:0033108;mitochondrial respiratory chain complex assembly;0.0232979507202674!GO:0040029;regulation of gene expression, epigenetic;0.0247569497317255!GO:0051329;interphase of mitotic cell cycle;0.0247569497317255!GO:0007034;vacuolar transport;0.0249124416813309!GO:0045603;positive regulation of endothelial cell differentiation;0.0249290259595784!GO:0045947;negative regulation of translational initiation;0.0261418540909281!GO:0046822;regulation of nucleocytoplasmic transport;0.0261902216726696!GO:0042158;lipoprotein biosynthetic process;0.0264480605727907!GO:0016788;hydrolase activity, acting on ester bonds;0.0264515964859509!GO:0004722;protein serine/threonine phosphatase activity;0.0264712075003374!GO:0000287;magnesium ion binding;0.0265917916537003!GO:0006919;caspase activation;0.0269236781445388!GO:0042809;vitamin D receptor binding;0.0274856403847887!GO:0009112;nucleobase metabolic process;0.0278259666115289!GO:0016605;PML body;0.0283010686741431!GO:0000087;M phase of mitotic cell cycle;0.0284015863439396!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0286601289962008!GO:0000096;sulfur amino acid metabolic process;0.0287583213762796!GO:0000776;kinetochore;0.0287583213762796!GO:0007021;tubulin folding;0.028799609528201!GO:0005521;lamin binding;0.0293001645330051!GO:0016791;phosphoric monoester hydrolase activity;0.0299616755541296!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0300338679753866!GO:0051336;regulation of hydrolase activity;0.0303010826938251!GO:0043087;regulation of GTPase activity;0.0305720455668921!GO:0004659;prenyltransferase activity;0.0309292840755919!GO:0051920;peroxiredoxin activity;0.0313750271664802!GO:0004003;ATP-dependent DNA helicase activity;0.0313750271664802!GO:0009966;regulation of signal transduction;0.0314861467848928!GO:0030137;COPI-coated vesicle;0.0324571014975909!GO:0030118;clathrin coat;0.0324858855387826!GO:0008180;signalosome;0.0334858274556695!GO:0005832;chaperonin-containing T-complex;0.0335193824529637!GO:0007067;mitosis;0.0341524189969062!GO:0031903;microbody membrane;0.0342923896931187!GO:0005778;peroxisomal membrane;0.0342923896931187!GO:0046128;purine ribonucleoside metabolic process;0.035169997477501!GO:0042278;purine nucleoside metabolic process;0.035169997477501!GO:0030258;lipid modification;0.0352311273719056!GO:0005777;peroxisome;0.0355416873957815!GO:0042579;microbody;0.0355416873957815!GO:0006268;DNA unwinding during replication;0.0358623877622162!GO:0009451;RNA modification;0.0359275674922382!GO:0030663;COPI coated vesicle membrane;0.0360570821807042!GO:0030126;COPI vesicle coat;0.0360570821807042!GO:0042608;T cell receptor binding;0.036155136876472!GO:0000781;chromosome, telomeric region;0.0369644058839355!GO:0005732;small nucleolar ribonucleoprotein complex;0.0370069891887156!GO:0031647;regulation of protein stability;0.0370069891887156!GO:0022406;membrane docking;0.0375526263953896!GO:0048278;vesicle docking;0.0375526263953896!GO:0003725;double-stranded RNA binding;0.0381278679194592!GO:0000118;histone deacetylase complex;0.0383282043725477!GO:0051325;interphase;0.0387045071633762!GO:0019976;interleukin-2 binding;0.0387045071633762!GO:0004911;interleukin-2 receptor activity;0.0387045071633762!GO:0030660;Golgi-associated vesicle membrane;0.0388736384111605!GO:0051235;maintenance of localization;0.0388978869364839!GO:0045309;protein phosphorylated amino acid binding;0.0389276787576666!GO:0031901;early endosome membrane;0.0389970411748128!GO:0000303;response to superoxide;0.0390435828482737!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0398236507466622!GO:0000090;mitotic anaphase;0.0401822323552032!GO:0051322;anaphase;0.0401822323552032!GO:0031124;mRNA 3'-end processing;0.0405712110562772!GO:0008287;protein serine/threonine phosphatase complex;0.0407227727987183!GO:0002820;negative regulation of adaptive immune response;0.0407941217009275!GO:0002823;negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0407941217009275!GO:0006904;vesicle docking during exocytosis;0.0411083439839089!GO:0008213;protein amino acid alkylation;0.0416705193866177!GO:0006479;protein amino acid methylation;0.0416705193866177!GO:0046519;sphingoid metabolic process;0.0418159770963312!GO:0043596;nuclear replication fork;0.0419038409052367!GO:0043433;negative regulation of transcription factor activity;0.0419038409052367!GO:0001784;phosphotyrosine binding;0.0419626075621157!GO:0006144;purine base metabolic process;0.0420022992008265!GO:0015923;mannosidase activity;0.0429410754959654!GO:0017091;AU-rich element binding;0.0430675653638252!GO:0050779;RNA destabilization;0.0430675653638252!GO:0000289;poly(A) tail shortening;0.0430675653638252!GO:0043281;regulation of caspase activity;0.0441351025855872!GO:0016311;dephosphorylation;0.0442376263996857!GO:0006672;ceramide metabolic process;0.044327605610021!GO:0050870;positive regulation of T cell activation;0.0443600143934426!GO:0006406;mRNA export from nucleus;0.0445024375743326!GO:0016569;covalent chromatin modification;0.0445447685207354!GO:0042393;histone binding;0.0448016099491668!GO:0006013;mannose metabolic process;0.0449111439293973!GO:0033673;negative regulation of kinase activity;0.0449111439293973!GO:0006469;negative regulation of protein kinase activity;0.0449111439293973!GO:0000209;protein polyubiquitination;0.0449301116085369!GO:0046649;lymphocyte activation;0.0461463640405056!GO:0016279;protein-lysine N-methyltransferase activity;0.0467148802521001!GO:0018024;histone-lysine N-methyltransferase activity;0.0467148802521001!GO:0016278;lysine N-methyltransferase activity;0.0467148802521001!GO:0051219;phosphoprotein binding;0.0467858347357441!GO:0046426;negative regulation of JAK-STAT cascade;0.0479093424688764!GO:0016570;histone modification;0.0480792240593271!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0481143622199282!GO:0005096;GTPase activator activity;0.0497054692014038!GO:0016407;acetyltransferase activity;0.0497054692014038!GO:0006308;DNA catabolic process;0.0497054692014038
|sample_id=11780
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=blood
|top_motifs=PAX3,7:3.94179005963;CREB1:3.54504173135;FOX{D1,D2}:3.05735576468;ATF4:2.84688859586;TLX2:2.78972411509;FOXO1,3,4:2.69688914624;ATF5_CREB3:2.58729912772;FOX{F1,F2,J1}:2.54065566135;BPTF:2.53274585007;RUNX1..3:2.49453431394;ELF1,2,4:2.32145000166;ELK1,4_GABP{A,B1}:2.0226157355;HIF1A:2.021996272;FOXN1:1.90625075121;PDX1:1.90567679946;ETS1,2:1.86433395804;DMAP1_NCOR{1,2}_SMARC:1.84489750261;HMX1:1.76084149385;PBX1:1.70107771169;ATF2:1.67422418805;RORA:1.56933241087;RFX2..5_RFXANK_RFXAP:1.54678521909;PAX6:1.53598798672;JUN:1.50098690866;CDX1,2,4:1.4564407069;PAX2:1.42662291107;FOX{I1,J2}:1.38821133327;LEF1_TCF7_TCF7L1,2:1.34913932952;ATF6:1.27354866456;SPI1:1.25920499594;BREu{core}:1.00074735062;STAT1,3:0.967532216247;T:0.935776785226;SOX2:0.902244990473;TGIF1:0.867063138919;IRF1,2:0.853640031607;ZBTB16:0.853353381424;AHR_ARNT_ARNT2:0.81080611433;RFX1:0.795846538481;SPIB:0.793418077534;SPZ1:0.782394701807;ZEB1:0.770324956744;GATA6:0.702816594686;NFATC1..3:0.662482744609;NKX6-1,2:0.655489878114;CRX:0.595009634733;YY1:0.520745802649;AR:0.49775784643;POU1F1:0.496677033846;NANOG{mouse}:0.484531420711;SNAI1..3:0.470187451971;CUX2:0.453596602565;NFKB1_REL_RELA:0.45110871117;MAFB:0.393498417331;SOX5:0.380375049002;EP300:0.366932588024;NRF1:0.358114930701;NFIX:0.343762199841;NKX3-1:0.340742916623;NFIL3:0.319085540914;HAND1,2:0.317475282693;IKZF2:0.299337186472;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.296026753226;FOXQ1:0.287387980427;POU2F1..3:0.269349258947;SREBF1,2:0.267068825952;IRF7:0.251143825012;HES1:0.249877475881;TBX4,5:0.244655074482;NKX2-1,4:0.232340327133;FOXP1:0.225628835474;HOX{A6,A7,B6,B7}:0.210521803746;LMO2:0.207148362027;NANOG:0.162459350177;MYOD1:0.118676478556;PAX4:0.115827952175;MYB:0.0778193374898;NFY{A,B,C}:0.0550649668606;FOXA2:0.0322574911481;VSX1,2:0.023348754959;ALX1:-0.0238724575745;NR5A1,2:-0.0373235732458;AIRE:-0.0848632792325;HBP1_HMGB_SSRP1_UBTF:-0.0870169073085;NKX2-2,8:-0.0976348771784;ZNF143:-0.126179623262;EGR1..3:-0.135095270652;TAL1_TCF{3,4,12}:-0.15174080466;FOSL2:-0.188245637535;PITX1..3:-0.219928260238;NFE2L1:-0.236254979313;RBPJ:-0.236680546477;E2F1..5:-0.247156649749;HLF:-0.274006129712;OCT4_SOX2{dimer}:-0.274065557886;ALX4:-0.365073808061;HNF4A_NR2F1,2:-0.365159703742;PAX5:-0.374194225104;SMAD1..7,9:-0.413184419745;HNF1A:-0.420094737775;STAT2,4,6:-0.481645278184;ZNF384:-0.483494746626;FOS_FOS{B,L1}_JUN{B,D}:-0.502405787692;NHLH1,2:-0.51274605626;PRRX1,2:-0.528370080791;EVI1:-0.53369130597;STAT5{A,B}:-0.543087795273;ADNP_IRX_SIX_ZHX:-0.55502161608;GFI1:-0.562720667224;CEBPA,B_DDIT3:-0.589522329271;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.614237026438;FOXP3:-0.642919063554;MYFfamily:-0.652895056702;RREB1:-0.655819560842;PPARG:-0.671935993017;MEF2{A,B,C,D}:-0.676301283735;GCM1,2:-0.687562175175;DBP:-0.69777525856;BACH2:-0.699009534333;GLI1..3:-0.756066684711;ONECUT1,2:-0.765260051007;NFE2:-0.783460477305;MTF1:-0.799007903222;MED-1{core}:-0.825054176104;ZFP161:-0.832217612859;GFI1B:-0.838471282647;bHLH_family:-0.867539024755;SOX{8,9,10}:-0.871432681271;FOXD3:-0.893669094097;ZNF148:-0.923845766407;SOX17:-0.925262864648;HMGA1,2:-0.944400707297;ARID5B:-0.96193204363;SRF:-0.976400364752;LHX3,4:-1.03414396279;TOPORS:-1.08449752615;MTE{core}:-1.09297696215;POU3F1..4:-1.10325428524;SP1:-1.10838931527;PRDM1:-1.15132586678;REST:-1.15521846498;ZBTB6:-1.17421315887;RXRA_VDR{dimer}:-1.17520810995;GATA4:-1.20059083548;NR6A1:-1.22354931286;PATZ1:-1.22566084029;ZNF238:-1.24387570051;PAX8:-1.24725535519;MZF1:-1.25129866317;NR1H4:-1.27612631613;ZNF423:-1.30144453649;UFEwm:-1.31371558688;XCPE1{core}:-1.34043409564;FOXL1:-1.34828898517;MYBL2:-1.35442168356;FOXM1:-1.37248412022;NR3C1:-1.39052748731;TP53:-1.41469424805;HOX{A5,B5}:-1.43931739586;TFAP4:-1.44918711899;XBP1:-1.45015051352;POU5F1:-1.46112134938;MAZ:-1.474228093;TBP:-1.48398238058;NFE2L2:-1.48411895528;NKX2-3_NKX2-5:-1.4849256945;TFCP2:-1.58584168053;GTF2A1,2:-1.60215225426;ESR1:-1.61880383931;RXR{A,B,G}:-1.62437889676;TEAD1:-1.65231824115;EBF1:-1.65415917472;TFAP2B:-1.65923354402;ESRRA:-1.66639353537;HIC1:-1.68937786066;EN1,2:-1.70184126911;GTF2I:-1.7050117355;HOXA9_MEIS1:-1.73048504376;TFDP1:-1.75828272637;HOX{A4,D4}:-1.79732980138;KLF4:-1.80127142513;POU6F1:-1.83645339128;CDC5L:-1.89265018819;TLX1..3_NFIC{dimer}:-1.91829277707;TFAP2{A,C}:-1.93675025689;GZF1:-2.05119633814;ZIC1..3:-2.07775888651;HSF1,2:-2.08517693476;TEF:-2.31224866997;NKX3-2:-2.36363675743;PAX1,9:-2.40152551012;IKZF1:-3.14574734465
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11780-124A7;search_select_hide=table117:FF:11780-124A7
}}
}}

Latest revision as of 18:19, 4 June 2020

Name:CD4+CD25+CD45RA+ naive regulatory T cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13238
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age25
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005426
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13238 CAGE DRX008060 DRR008932
Accession ID Hg19

Library idBAMCTSS
CNhs13238 DRZ000357 DRZ001742
Accession ID Hg38

Library idBAMCTSS
CNhs13238 DRZ011707 DRZ013092
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.661
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.117
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.25
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.218
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.471
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.21
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.32
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.788
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.452
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.857
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.361
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.236
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.123
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.557
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.895
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.218
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.203
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.446
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.218
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.199
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.837
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.123
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.399
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.929
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.661
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.598
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.663
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.912
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.123
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.891
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.296
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13238

Jaspar motifP-value
MA0002.27.24755e-4
MA0003.10.437
MA0004.10.701
MA0006.10.0399
MA0007.10.962
MA0009.10.192
MA0014.10.384
MA0017.10.907
MA0018.22.27826e-10
MA0019.10.403
MA0024.10.941
MA0025.10.0674
MA0027.10.431
MA0028.16.29309e-8
MA0029.10.761
MA0030.10.00164
MA0031.12.57282e-5
MA0035.20.136
MA0038.10.246
MA0039.20.491
MA0040.10.853
MA0041.10.603
MA0042.10.666
MA0043.12.61068e-4
MA0046.10.667
MA0047.20.0671
MA0048.10.708
MA0050.11.61226e-4
MA0051.10.02
MA0052.10.0256
MA0055.10.441
MA0057.10.437
MA0058.10.604
MA0059.10.705
MA0060.10.818
MA0061.10.079
MA0062.29.54976e-23
MA0065.20.625
MA0066.10.738
MA0067.10.00542
MA0068.10.971
MA0069.10.772
MA0070.10.937
MA0071.10.876
MA0072.10.214
MA0073.10.937
MA0074.10.132
MA0076.12.51449e-10
MA0077.10.0359
MA0078.10.678
MA0079.20.672
MA0080.23.06307e-10
MA0081.10.00934
MA0083.10.0384
MA0084.10.271
MA0087.10.764
MA0088.10.331
MA0090.12.35643e-4
MA0091.10.254
MA0092.10.599
MA0093.10.757
MA0099.28.4987e-5
MA0100.10.459
MA0101.10.895
MA0102.20.59
MA0103.10.279
MA0104.20.0698
MA0105.10.00402
MA0106.10.0828
MA0107.10.937
MA0108.26.36676e-6
MA0111.10.454
MA0112.20.645
MA0113.10.779
MA0114.10.736
MA0115.10.688
MA0116.10.0142
MA0117.10.0351
MA0119.10.0918
MA0122.10.53
MA0124.10.329
MA0125.10.274
MA0131.10.0283
MA0135.10.369
MA0136.13.30483e-24
MA0137.20.692
MA0138.20.188
MA0139.10.0892
MA0140.10.223
MA0141.10.273
MA0142.10.102
MA0143.10.204
MA0144.10.707
MA0145.10.0247
MA0146.10.7
MA0147.10.0774
MA0148.10.279
MA0149.10.285
MA0150.10.283
MA0152.10.00359
MA0153.10.465
MA0154.10.698
MA0155.10.141
MA0156.18.32959e-20
MA0157.16.31214e-5
MA0159.10.643
MA0160.10.821
MA0162.10.165
MA0163.15.41096e-4
MA0164.10.839
MA0258.10.726
MA0259.10.0886



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13238

Novel motifP-value
10.699
100.0238
1000.615
1010.488
1020.654
1030.873
1040.866
1050.371
1060.705
1071.49079e-4
1080.391
1090.278
110.511
1100.853
1110.873
1120.974
1130.694
1140.997
1150.359
1160.0613
1170.00361
1180.352
1190.0766
120.826
1200.954
1210.805
1220.567
1230.0281
1240.71
1250.224
1260.914
1270.982
1280.0988
1290.886
130.543
1300.543
1310.256
1320.296
1330.965
1340.843
1350.912
1360.755
1370.0492
1380.445
1390.198
140.764
1400.27
1410.642
1420.54
1430.0101
1440.813
1450.308
1460.792
1470.0197
1480.659
1490.41
150.401
1500.861
1510.902
1520.241
1530.871
1540.553
1550.0107
1560.911
1570.54
1580.00486
1590.589
160.373
1600.13
1610.788
1620.00676
1630.666
1640.111
1650.874
1660.214
1670.0838
1680.88
1690.0921
170.519
180.686
190.0429
20.226
200.296
210.841
220.374
230.27
240.646
250.101
260.961
270.806
280.581
290.0323
30.462
300.156
310.616
320.0273
330.126
340.339
350.475
360.0354
370.572
380.767
390.178
40.775
400.814
410.0803
420.253
430.733
440.977
450.188
460.84
470.36
480.682
490.322
50.666
500.513
510.969
520.273
530.678
540.834
550.829
560.747
570.756
580.18
590.518
60.692
600.9
610.0885
620.287
630.765
640.695
650.629
660.927
670.841
680.483
690.956
70.466
700.271
710.209
720.12
730.915
740.69
750.00675
760.0498
770.00563
780.358
790.345
80.346
800.0205
810.674
820.432
830.99
840.613
850.226
860.2
870.826
880.996
890.0403
90.909
900.188
910.962
920.666
930.849
940.312
950.0101
960.638
970.301
980.377
996.80335e-6



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13238


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)
0000815 (regulatory T cell)
0000898 (naive T cell)
0000792 (CD4-positive, CD25-positive, alpha-beta regulatory T cell)
0002677 (naive regulatory T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

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