FF:11786-124B4: Difference between revisions

Latest revision as of 18:20, 4 June 2020

Name:	CD4+CD25-CD45RA- memory conventional T cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13239
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	25
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	4
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005369

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13239		CAGE		DRX008062		DRR008934

Accession ID Hg19

Library id		BAM		CTSS
CNhs13239		DRZ000359		DRZ001744

Accession ID Hg38

Library id		BAM		CTSS
CNhs13239		DRZ011709		DRZ013094

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.566
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.165
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.221
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.247
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.566
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.219
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.518
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.787
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.397
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.829
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.327
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.256
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.368
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.717
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.432
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.853
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.465
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.209
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.432
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.247
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.247
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.903
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.141
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.37
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.829
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.844
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.564
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.72
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.992
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.332
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.898
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.411
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0.247
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.332
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13239

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.34367e-7
MA0003.1	MA0003.1	0.633
MA0004.1	MA0004.1	0.87
MA0006.1	MA0006.1	0.0806
MA0007.1	MA0007.1	0.741
MA0009.1	MA0009.1	0.0858
MA0014.1	MA0014.1	0.643
MA0017.1	MA0017.1	0.784
MA0018.2	MA0018.2	3.66639e-10
MA0019.1	MA0019.1	0.275
MA0024.1	MA0024.1	0.647
MA0025.1	MA0025.1	0.0274
MA0027.1	MA0027.1	0.551
MA0028.1	MA0028.1	1.37653e-5
MA0029.1	MA0029.1	0.363
MA0030.1	MA0030.1	1.77628e-4
MA0031.1	MA0031.1	6.72121e-6
MA0035.2	MA0035.2	0.121
MA0038.1	MA0038.1	0.315
MA0039.2	MA0039.2	0.729
MA0040.1	MA0040.1	0.593
MA0041.1	MA0041.1	0.843
MA0042.1	MA0042.1	0.622
MA0043.1	MA0043.1	0.00151
MA0046.1	MA0046.1	0.363
MA0047.2	MA0047.2	0.0258
MA0048.1	MA0048.1	0.784
MA0050.1	MA0050.1	3.04223e-7
MA0051.1	MA0051.1	0.00293
MA0052.1	MA0052.1	0.0262
MA0055.1	MA0055.1	0.767
MA0057.1	MA0057.1	0.389
MA0058.1	MA0058.1	0.638
MA0059.1	MA0059.1	0.7
MA0060.1	MA0060.1	0.883
MA0061.1	MA0061.1	7.51223e-5
MA0062.2	MA0062.2	7.48837e-21
MA0065.2	MA0065.2	0.593
MA0066.1	MA0066.1	0.385
MA0067.1	MA0067.1	0.00163
MA0068.1	MA0068.1	0.732
MA0069.1	MA0069.1	0.781
MA0070.1	MA0070.1	0.872
MA0071.1	MA0071.1	0.904
MA0072.1	MA0072.1	0.00573
MA0073.1	MA0073.1	0.874
MA0074.1	MA0074.1	0.483
MA0076.1	MA0076.1	9.61873e-8
MA0077.1	MA0077.1	0.0244
MA0078.1	MA0078.1	0.661
MA0079.2	MA0079.2	0.703
MA0080.2	MA0080.2	3.43991e-12
MA0081.1	MA0081.1	0.00591
MA0083.1	MA0083.1	0.166
MA0084.1	MA0084.1	0.44
MA0087.1	MA0087.1	0.406
MA0088.1	MA0088.1	0.526
MA0090.1	MA0090.1	1.38726e-4
MA0091.1	MA0091.1	0.36
MA0092.1	MA0092.1	0.759
MA0093.1	MA0093.1	0.92
MA0099.2	MA0099.2	0.0766
MA0100.1	MA0100.1	0.75
MA0101.1	MA0101.1	0.0275
MA0102.2	MA0102.2	0.967
MA0103.1	MA0103.1	0.643
MA0104.2	MA0104.2	0.061
MA0105.1	MA0105.1	4.5702e-6
MA0106.1	MA0106.1	0.0312
MA0107.1	MA0107.1	0.057
MA0108.2	MA0108.2	3.76511e-4
MA0111.1	MA0111.1	0.658
MA0112.2	MA0112.2	0.538
MA0113.1	MA0113.1	0.833
MA0114.1	MA0114.1	0.74
MA0115.1	MA0115.1	0.427
MA0116.1	MA0116.1	0.00467
MA0117.1	MA0117.1	0.0123
MA0119.1	MA0119.1	0.101
MA0122.1	MA0122.1	0.456
MA0124.1	MA0124.1	0.214
MA0125.1	MA0125.1	0.186
MA0131.1	MA0131.1	0.098
MA0135.1	MA0135.1	0.764
MA0136.1	MA0136.1	5.78667e-25
MA0137.2	MA0137.2	0.764
MA0138.2	MA0138.2	0.132
MA0139.1	MA0139.1	0.108
MA0140.1	MA0140.1	0.0975
MA0141.1	MA0141.1	0.334
MA0142.1	MA0142.1	0.348
MA0143.1	MA0143.1	0.451
MA0144.1	MA0144.1	0.812
MA0145.1	MA0145.1	0.0441
MA0146.1	MA0146.1	0.728
MA0147.1	MA0147.1	0.101
MA0148.1	MA0148.1	0.117
MA0149.1	MA0149.1	0.294
MA0150.1	MA0150.1	0.579
MA0152.1	MA0152.1	0.00934
MA0153.1	MA0153.1	0.349
MA0154.1	MA0154.1	0.242
MA0155.1	MA0155.1	0.263
MA0156.1	MA0156.1	2.30843e-23
MA0157.1	MA0157.1	1.447e-4
MA0159.1	MA0159.1	0.489
MA0160.1	MA0160.1	0.9
MA0162.1	MA0162.1	0.383
MA0163.1	MA0163.1	2.77839e-4
MA0164.1	MA0164.1	0.84
MA0258.1	MA0258.1	0.82
MA0259.1	MA0259.1	0.187

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13239

Novel motif	Logo	P-value
1	1	0.713
10	10	0.0255
100	100	0.96
101	101	0.439
102	102	0.904
103	103	0.543
104	104	0.656
105	105	0.159
106	106	0.733
107	107	0.00202
108	108	0.468
109	109	0.211
11	11	0.447
110	110	0.969
111	111	0.549
112	112	0.931
113	113	0.381
114	114	0.923
115	115	0.391
116	116	0.0868
117	117	0.00282
118	118	0.488
119	119	0.169
12	12	0.593
120	120	0.726
121	121	0.821
122	122	0.577
123	123	0.0844
124	124	0.691
125	125	0.537
126	126	0.405
127	127	0.977
128	128	0.57
129	129	0.884
13	13	0.715
130	130	0.626
131	131	0.524
132	132	0.228
133	133	0.713
134	134	0.747
135	135	0.943
136	136	0.9
137	137	0.0375
138	138	0.752
139	139	0.159
14	14	0.68
140	140	0.315
141	141	0.887
142	142	0.626
143	143	0.00125
144	144	0.79
145	145	0.467
146	146	0.86
147	147	0.0152
148	148	0.295
149	149	0.532
15	15	0.253
150	150	0.81
151	151	0.608
152	152	0.557
153	153	0.926
154	154	0.518
155	155	0.0245
156	156	0.588
157	157	0.217
158	158	0.02
159	159	0.233
16	16	0.479
160	160	0.12
161	161	0.563
162	162	0.0138
163	163	0.388
164	164	0.18
165	165	0.644
166	166	0.294
167	167	0.346
168	168	0.471
169	169	0.145
17	17	0.707
18	18	0.89
19	19	0.032
2	2	0.308
20	20	0.286
21	21	0.843
22	22	0.348
23	23	0.54
24	24	0.7
25	25	0.105
26	26	0.989
27	27	0.67
28	28	0.531
29	29	0.0316
3	3	0.435
30	30	0.154
31	31	0.723
32	32	0.0282
33	33	0.191
34	34	0.396
35	35	0.302
36	36	0.0355
37	37	0.257
38	38	0.712
39	39	0.194
4	4	0.557
40	40	0.798
41	41	0.105
42	42	0.192
43	43	0.645
44	44	0.882
45	45	0.266
46	46	0.703
47	47	0.389
48	48	0.61
49	49	0.277
5	5	0.475
50	50	0.415
51	51	0.808
52	52	0.385
53	53	0.616
54	54	0.995
55	55	0.963
56	56	0.799
57	57	0.901
58	58	0.155
59	59	0.5
6	6	0.642
60	60	0.707
61	61	0.15
62	62	0.205
63	63	0.734
64	64	0.741
65	65	0.654
66	66	0.733
67	67	0.681
68	68	0.74
69	69	0.805
7	7	0.477
70	70	0.191
71	71	0.108
72	72	0.152
73	73	0.509
74	74	0.986
75	75	0.026
76	76	0.174
77	77	0.00821
78	78	0.575
79	79	0.472
8	8	0.415
80	80	0.00163
81	81	0.815
82	82	0.347
83	83	0.461
84	84	0.585
85	85	0.629
86	86	0.0737
87	87	0.845
88	88	0.892
89	89	0.0342
9	9	0.985
90	90	0.159
91	91	0.998
92	92	0.939
93	93	0.513
94	94	0.28
95	95	0.00457
96	96	0.594
97	97	0.455
98	98	0.346
99	99	3.7156e-6

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13239

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011122 human CD4-positiveCD25-CD45RA- naive conventional T cells sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)
0000898 (naive T cell)
0000895 (naive thymus-derived CD4-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011122 (human CD4-positiveCD25-CD45RA- naive conventional T cells sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)
CL:0002425 (early T lineage precursor)
CL:0002427 (resting double-positive thymocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005369
+|accession_numbers=CAGE;DRX008062;DRR008934;DRZ000359;DRZ001744;DRZ011709;DRZ013094
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624,CL:0000898,CL:0000895
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:63953435..63953499,+!p1@ATXN7!1.96!89.29!ATXN7;;chr5:133451294..133451310,+!p2@TCF7!1.93!83.93!TCF7;;chr10:35484053..35484076,+!p1@CREM!1.85!167.08!CREM;;chr1:25256756..25256774,-!p1@RUNX3!1.82!118.03!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!1.80!83.93!STAT4;;chr2:231090433..231090469,+!p1@SP140!1.74!54.42!SP140;;chr4:109087445..109087463,-!p1@LEF1!1.74!53.65!LEF1;;chr7:50343634..50343717,+!p2@IKZF1!1.72!51.73!IKZF1;;chr19:16435625..16435682,+!p1@KLF2!1.70!1479.23!KLF2;;chrY:21906594..21906622,-!p1@KDM5D!1.70!48.67!KDM5D;;chrX:106960285..106960299,-!p1@TSC22D3!1.68!1176.49!TSC22D3;;chr9:3525727..3525828,-!p2@RFX3!1.65!108.45!RFX3;;chr3:71542615..71542644,-!p12@FOXP1!1.64!42.54!FOXP1;;chr10:35416142..35416169,+!p3@CREM!1.63!108.07!CREM;;chr5:133450365..133450444,+!p1@TCF7!1.61!175.13!TCF7;;chr19:54058073..54058088,+!p1@ZNF331!1.60!38.71!ZNF331;;chr2:157189180..157189290,-!p1@NR4A2!1.53!164.02!NR4A2;;chr14:75745523..75745537,+!p1@FOS!1.52!3598.82!FOS;;chr2:192015750..192015793,-!p2@STAT4!1.52!42.54!STAT4;;chr15:60884706..60884743,-!p1@RORA!1.51!155.20!RORA;;chr20:50159198..50159299,-!p1@NFATC2!1.51!45.22!NFATC2;;chr19:45971246..45971265,+!p1@FOSB!1.50!544.94!FOSB;;chr17:37934365..37934387,-!p2@IKZF3!1.49!29.89!IKZF3;;chr17:38497662..38497713,+!p4@RARA!1.48!33.72!RARA;;chr9:117150254..117150271,-!p1@AKNA!1.47!75.88!AKNA;;chr6:91006518..91006570,-!p1@BACH2!1.45!61.70!BACH2;;chr2:97202991..97203043,+!p3@ARID5A!1.44!26.44!ARID5A;;chr9:102584262..102584276,+!p1@NR4A3!1.41!54.03!NR4A3;;chr17:45810594..45810608,+!p1@TBX21!1.41!24.91!TBX21;;chr3:27763807..27763822,-!p1@EOMES!1.41!24.91!EOMES;;chr19:54041669..54041697,+!p2@ZNF331!1.41!24.53!ZNF331;;chr14:75988771..75988826,+!p1@BATF!1.40!31.81!BATF;;chr12:72056800..72056834,+!p1@THAP2!1.39!31.42!THAP2;;chr3:71542684..71542720,-!p18@FOXP1!1.37!22.23!FOXP1;;chr7:50343895..50343936,+!p5@IKZF1!1.35!21.46!IKZF1;;chr5:133451347..133451358,+!p3@TCF7!1.34!21.08!TCF7;;chr19:19779619..19779670,+!p1@ZNF101!1.33!56.33!ZNF101;;chr6:106546808..106546833,+!p3@PRDM1!1.33!25.68!PRDM1;;chr8:123793988..123794016,+!p1@ZHX2!1.32!34.87!ZHX2;;chr7:50344251..50344288,+!p3@IKZF1!1.32!19.93!IKZF1;;chr10:35484090..35484104,+!p6@CREM!1.31!19.54!CREM;;chr19:54040550..54040594,+!p20@ZNF331!1.31!19.54!ZNF331;;chr2:208394817..208394834,+!p3@CREB1!1.29!73.20!CREB1;;chr3:71542651..71542683,-!p22@FOXP1!1.29!18.39!FOXP1;;chr4:109090075..109090095,-!p2@LEF1!1.28!18.01!LEF1;;chr19:12902289..12902307,+!p1@JUNB!1.25!3698.08!JUNB;;chr19:19729477..19729542,-!p1@PBX4!1.24!34.49!PBX4;;chr10:8096772..8096787,+!p2@GATA3!1.24!19.54!GATA3;;chr13:74707894..74707947,-!p6@KLF12!1.24!18.01!KLF12;;chr11:128392273..128392308,-!p2@ETS1!1.23!67.45!ETS1;;chr21:36421535..36421610,-!p2@RUNX1!1.23!56.33!RUNX1;;chr18:46475696..46475713,-!p1@SMAD7!1.23!18.01!SMAD7;;chr3:71355163..71355209,-!p5@FOXP1!1.22!21.46!FOXP1;;chr2:231090471..231090504,+!p2@SP140!1.22!15.71!SP140;;chr7:50344289..50344323,+!p1@IKZF1!1.22!15.71!IKZF1;;chr3:18486354..18486377,-!p2@SATB1!1.20!18.78!SATB1;;chr5:142814241..142814278,-!p12@NR3C1!1.20!14.95!NR3C1;;chr14:64971288..64971316,-!p2@ZBTB25!1.19!44.45!ZBTB25;;chr8:60031619..60031676,-!p1@TOX!1.19!31.04!TOX;;chr16:79634624..79634642,-!p1@MAF!1.18!54.80!MAF;;chr8:81397846..81397860,+!p3@ZBTB10!1.18!17.63!ZBTB10;;chr17:38020392..38020477,-!p1@IKZF3!1.18!14.18!IKZF3;;chr13:41593425..41593480,-!p1@ELF1!1.17!86.61!ELF1;;chr20:51588873..51588953,+!p1@TSHZ2!1.17!18.39!TSHZ2;;chr10:3824332..3824425,-!p4@KLF6!1.16!21.84!KLF6;;chr11:128392085..128392232,-!p1@ETS1!1.14!428.82!ETS1;;chr6:391743..391759,+!p1@IRF4!1.14!12.65!IRF4;;chr16:3313791..3313834,+!p2@ZNF263!1.13!27.59!ZNF263;;chr14:64970670..64970712,-!p3@ZBTB25!1.12!26.44!ZBTB25;;chr10:35416223..35416234,+!p12@CREM!1.12!12.26!CREM;;chr8:67525443..67525459,-!p2@MYBL1!1.11!17.63!MYBL1;;chr7:137620650..137620677,-!p3@CREB3L2!1.11!11.88!CREB3L2;;chr3:23986824..23986848,+!p2@NR1D2!1.10!64.76!NR1D2;;chr6:91006575..91006602,-!p2@BACH2!1.10!17.24!BACH2;;chr10:35416172..35416184,+!p13@CREM!1.10!11.50!CREM;;chr4:57522674..57522699,-!p5@HOPX!1.10!11.50!HOPX;;chr19:54041645..54041661,+!p5@ZNF331!1.10!11.50!ZNF331;;chr3:39195075..39195088,-!p1@CSRNP1!1.09!71.66!CSRNP1;;chr2:97202480..97202499,+!p1@ARID5A!1.08!112.67!ARID5A;;chr2:192015677..192015691,-!p3@STAT4!1.08!11.11!STAT4;;chr14:75988831..75988847,+!p2@BATF!1.08!11.11!BATF;;chr20:51589835..51589848,+!p5@TSHZ2!1.08!11.11!TSHZ2;;chr12:72056773..72056796,+!p3@THAP2!1.07!14.18!THAP2;;chr6:12009042..12009092,+!p6@HIVEP1!1.06!13.80!HIVEP1;;chr4:38665769..38665801,+!p2@KLF3!1.05!93.89!KLF3;;chr4:57522598..57522664,-!p3@HOPX!1.05!10.35!HOPX;;chr6:106546834..106546850,+!p4@PRDM1!1.05!10.35!PRDM1;;chr19:45972701..45972774,+!p2@FOSB!1.04!13.80!FOSB;;chr8:81397820..81397836,+!p2@ZBTB10!1.04!12.65!ZBTB10;;chr10:35416125..35416138,+!p10@CREM!1.04!11.88!CREM;;chr3:71179699..71179744,-!p2@FOXP1!1.02!72.43!FOXP1;;chr1:45805693..45805718,+!p3@TOE1!1.02!20.69!TOE1;;chr17:37934204..37934241,-!p3@IKZF3!1.02!9.58!IKZF3;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.01!53.65!ZNF10;;chr19:12721790..12721810,+!p2@ZNF791!1.01!26.06!ZNF791;;chrX:106960221..106960236,-!p3@TSC22D3!1.01!26.06!TSC22D3;;chr17:38497715..38497734,+!p8@RARA!1.01!9.20!RARA;;chr7:50348268..50348366,+!p4@IKZF1!1.01!9.20!IKZF1;;chr21:36421147..36421193,-!p10@RUNX1!1.01!9.20!RUNX1;;chr11:67007548..67007610,+!p3@KDM2A!1.00!68.21!KDM2A;;chr6:15249128..15249177,+!p4@JARID2!1.00!16.48!JARID2;;chr4:57522166..57522260,-!p2@HOPX!1.00!10.35!HOPX;;chr9:102584241..102584261,+!p4@NR4A3!0.99!13.80!NR4A3;;chr17:37934280..37934299,-!p6@IKZF3!0.99!8.81!IKZF3;;chr14:75746722..75746777,+!p2@FOS!0.98!11.11!FOS;;chr4:109088940..109089037,-!p4@LEF1!0.97!8.43!LEF1;;chr10:35485013..35485034,+!p15@CREM!0.97!8.43!CREM;;chr2:208031542..208031595,-!p2@KLF7!0.96!58.63!KLF7;;chr19:52674696..52674758,-!p1@ZNF836!0.96!24.91!ZNF836;;chr20:56195474..56195506,-!p1@ZBP1!0.96!8.05!ZBP1;;chr21:36421347..36421380,-!p8@RUNX1!0.96!8.05!RUNX1;;chr17:38020516..38020544,-!p5@IKZF3!0.96!8.05!IKZF3;;chr10:104154246..104154347,+!p3@NFKB2!0.95!50.20!NFKB2;;chrX:101186981..101187030,-!p1@ZMAT1!0.95!26.44!ZMAT1;;chr15:60884747..60884774,-!p3@RORA!0.95!19.93!RORA;;chr11:128563948..128564003,+!p1@FLI1!0.94!95.42!FLI1;;chr8:60031563..60031574,-!p7@TOX!0.94!7.66!TOX;;chr2:68592406..68592424,+!p1@PLEK!0.94!7.66!PLEK;;chr3:63898321..63898396,+!p3@ATXN7!0.93!17.63!ATXN7;;chr10:8096631..8096660,+!p1@GATA3!0.93!9.20!GATA3;;chr2:68592394..68592405,+!p2@PLEK!0.92!7.28!PLEK;;chr4:109089901..109089930,-!p3@LEF1!0.92!7.28!LEF1;;chr6:106546731..106546755,+!p5@PRDM1!0.92!7.28!PRDM1;;chrY:2803415..2803468,+!p1@ZFY!0.92!7.28!ZFY;;chr6:143266297..143266356,-!p1@HIVEP2!0.91!36.02!HIVEP2;;chr6:106546786..106546802,+!p6@PRDM1!0.90!6.90!PRDM1;;chr17:56565257..56565283,-!p2@HSF5!0.90!6.90!HSF5;;chr20:56195525..56195556,-!p2@ZBP1!0.90!6.90!ZBP1;;chr13:41240717..41240735,-!p2@FOXO1!0.89!47.90!FOXO1;;chr16:79633894..79633954,-!p3@MAF!0.89!13.41!MAF;;chr11:67007611..67007622,+!p6@KDM2A!0.89!9.20!KDM2A;;chr8:81397876..81397898,+!p5@ZBTB10!0.89!8.05!ZBTB10;;chr19:18392422..18392440,-!p1@JUND!0.88!948.85!JUND;;chr2:43453734..43453751,-!p1@ZFP36L2!0.88!744.98!ZFP36L2;;chr7:77428066..77428132,+!p2@PHTF2!0.88!45.22!PHTF2;;chr11:85375237..85375277,-!p4@CREBZF!0.88!7.66!CREBZF;;chr11:128392265..128392267,-!p10@ETS1!0.88!6.51!ETS1;;chr19:12444440..12444455,-!p1@ZNF563!0.87!11.50!ZNF563;;chrX:106960249..106960260,-!p5@TSC22D3!0.87!10.35!TSC22D3;;chr4:38665810..38665827,+!p1@KLF3!0.86!96.57!KLF3;;chr7:21467674..21467727,+!p1@SP4!0.86!26.06!SP4;;chr14:65569101..65569119,-!p3@MAX!0.86!20.69!MAX;;chr7:99097863..99097936,-!p1@ZNF394!0.85!64.76!ZNF394;;chr4:185395633..185395651,-!p2@IRF2!0.85!9.96!IRF2;;chr2:100759037..100759058,-!p2@AFF3!0.85!6.13!AFF3;;chr3:71179687..71179696,-!p54@FOXP1!0.85!6.13!FOXP1;;chr3:71542747..71542766,-!p34@FOXP1!0.85!6.13!FOXP1;;chr14:64971893..64971928,-!p8@ZBTB25!0.85!6.13!ZBTB25;;chr20:52226313..52226350,-!p3@ZNF217!0.85!6.13!ZNF217;;chrX:106960180..106960197,-!p2@TSC22D3!0.84!23.76!TSC22D3;;chr17:36861675..36861697,+!p3@MLLT6!0.84!14.56!MLLT6;;chr2:157199008..157199023,-!p3@NR4A2!0.84!13.03!NR4A2;;chr19:16435523..16435619,+!p2@KLF2!0.84!8.43!KLF2;;chr2:61108695..61108753,+!p1@REL!0.83!42.15!REL;;chr13:74708246..74708264,-!p8@KLF12!0.83!6.51!KLF12;;chr7:50344144..50344157,+!p6@IKZF1!0.83!5.75!IKZF1;;chr19:54041574..54041589,+!p6@ZNF331!0.83!5.75!ZNF331;;chr10:3827389..3827408,-!p1@KLF6!0.82!466.00!KLF6;;chr5:131826457..131826514,-!p1@IRF1!0.82!239.51!IRF1;;chr12:57914286..57914304,-!p1@DDIT3!0.82!221.12!DDIT3;;chr10:3827417..3827428,-!p3@KLF6!0.82!51.73!KLF6;;chr16:68119324..68119364,+!p1@NFATC3!0.82!26.83!NFATC3;;chr6:45390269..45390298,+!p5@RUNX2!0.82!9.58!RUNX2;;chr4:103422499..103422632,+!p1@NFKB1!0.81!123.01!NFKB1;;chr18:77155922..77155939,+!p1@NFATC1!0.81!15.71!NFATC1;;chr16:79634595..79634620,-!p2@MAF!0.81!10.35!MAF;;chr5:142782823..142782854,-!p3@NR3C1!0.81!8.05!NR3C1;;chr16:88752889..88752921,-!p1@SNAI3!0.81!6.51!SNAI3;;chr9:117150303..117150312,-!p3@AKNA!0.80!6.90!AKNA;;chr8:41909982..41910009,-!p2@KAT6A!0.80!6.13!KAT6A;;chr19:54041603..54041615,+!p10@ZNF331!0.80!5.37!ZNF331;;chr2:100759010..100759035,-!p1@AFF3!0.80!5.37!AFF3;;chr4:109089573..109089585,-!p8@LEF1!0.80!5.37!LEF1;;chr9:3526360..3526421,-!p5@RFX3!0.79!9.96!RFX3;;chr11:67007522..67007533,+!p5@KDM2A!0.79!9.20!KDM2A;;chr17:36861735..36861755,+!p4@MLLT6!0.79!9.20!MLLT6;;chr9:32550965..32551031,-!p4@TOPORS!0.79!8.43!TOPORS;;chr19:19779686..19779697,+!p3@ZNF101!0.79!6.13!ZNF101;;chr11:67007477..67007493,+!p2@KDM2A!0.78!46.37!KDM2A;;chr19:9546177..9546224,-!p1@ZNF266!0.78!39.47!ZNF266;;chr9:3525867..3525902,-!p3@RFX3!0.78!18.78!RFX3;;chr19:22235279..22235301,+!p1@ZNF257!0.78!9.96!ZNF257;;chr14:99737850..99737852,-!p3@BCL11B!0.78!4.98!BCL11B;;chr16:89789271..89789291,+!p5@ZNF276!0.78!4.98!ZNF276;;chr5:142814316..142814335,-!p18@NR3C1!0.78!4.98!NR3C1;;chr6:152011654..152011682,+!p1@ESR1!0.78!4.98!ESR1;;chr6:91006503..91006517,-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180!0.36!11.88!ZNF180;;chr4:2263861..2263883,-!p2@MXD4!0.36!11.88!MXD4;;chr19:50169013..50169062,-!p2@IRF3!0.36!11.50!IRF3;;chr3:113415441..113415500,-!p1@KIAA2018!0.36!10.73!KIAA2018;;chr17:46621937..46621966,-!p2@HOXB2!0.36!4.98!HOXB2;;chr19:20150301..20150321,-!p1@ZNF682!0.36!4.60!ZNF682;;chr6:157099036..157099067,+!p5@ARID1B!0.36!4.60!ARID1B;;chr6:45389791..45389832,+!p3@RUNX2!0.36!4.60!RUNX2;;chr17:38256932..38256965,-!p4@NR1D1!0.36!3.83!NR1D1;;chr3:126194815..126194848,-!p2@ZXDC!0.36!3.83!ZXDC;;chr8:128750555..128750609,+!p5@MYC!0.36!3.45!MYC;;chr14:64970361..64970389,-!p4@ZBTB25!0.36!3.45!ZBTB25;;chr19:53039233..53039247,+!p2@ZNF808!0.36!2.30!ZNF808;;chr19:12444458..12444486,-!p2@ZNF563!0.36!2.30!ZNF563;;chr11:695731..695765,-!p5@DEAF1!0.36!1.92!DEAF1;;chr2:113057415..113057477,+!p3@ZC3H6!0.36!1.92!ZC3H6;;chr7:104654708..104654711,+!p6@MLL5!0.36!1.53!MLL5;;chr11:118307179..118307223,+!p1@MLL!0.35!61.70!MLL;;chr3:71114066..71114114,-!p1@FOXP1!0.35!41.00!FOXP1;;chr1:155826967..155827018,-!p1@GON4L!0.35!35.26!GON4L;;chr22:21356016..21356105,-!p1@THAP7!0.35!31.42!THAP7;;chr3:101395963..101395993,-!p1@ZBTB11!0.35!30.27!ZBTB11;;chr11:9482551..9482580,+!p1@ZNF143!0.35!25.68!ZNF143;;chr3:88108381..88108450,+!p1@ENST00000473136!0.35!21.08!ZNF654;;chr6:27440837..27440912,-!p1@ZNF184!0.35!8.81!ZNF184;;chr3:101395936..101395962,-!p2@ZBTB11!0.35!7.28!ZBTB11;;chr1:117602932..117602973,+!p1@TTF2!0.35!6.90!TTF2;;chr19:22034809..22034878,-!p2@ZNF43!0.35!6.51!ZNF43;;chr4:103422471..103422495,+!p2@NFKB1!0.35!4.98!NFKB1;;chr8:182424..182462,+!p1@ZNF596!0.35!4.60!ZNF596;;chr1:42501569..42501614,-!p1@HIVEP3!0.35!3.45!HIVEP3;;chr8:71316428..71316459,-!p2@NCOA2!0.35!2.68!NCOA2;;chr19:11616645..11616663,-!p1@ZNF653!0.35!2.30!ZNF653;;chr19:12551824..12551846,-!p2@ZNF443!0.35!1.92!ZNF443;;chr4:81118647..81118666,+!p1@PRDM8!0.35!1.92!PRDM8;;chr14:35872494..35872511,-!p5@NFKBIA!0.35!1.92!NFKBIA;;chr8:116681022..116681042,-!p10@TRPS1!0.35!1.92!TRPS1;;chr14:64971323..64971333,-!p10@ZBTB25!0.35!1.53!ZBTB25;;chr22:31742303..31742350,-!p1@PATZ1!0.34!21.46!PATZ1;;chr19:53466095..53466149,-!p1@ZNF321P,p1@ZNF816-ZNF321P,p1@ZNF816!0.34!7.66!ZNF816;;chr4:87928142..87928165,+!p5@AFF1!0.34!6.13!AFF1;;chr6:106534230..106534254,+!p2@PRDM1!0.34!4.22!PRDM1;;chr1:211432887..211432903,+!p4@RCOR3!0.34!3.83!RCOR3;;chr19:35225078..35225120,+!p2@ZNF181!0.34!3.83!ZNF181;;chr11:47270436..47270464,+!p2@NR1H3!0.34!3.45!NR1H3;;chr2:113033141..113033162,+!p2@ZC3H6!0.34!3.45!ZC3H6;;chr12:46123273..46123329,+!p3@ARID2!0.34!2.68!ARID2;;chr19:35455160..35455197,-!p2@ZNF792!0.34!2.30!ZNF792;;chr19:58144589..58144603,+!p2@ZNF211!0.34!1.92!ZNF211;;chr1:158979680..158979683,+!p9@IFI16!0.34!1.92!IFI16;;chr8:128747661..128747703,+!p6@MYC!0.34!1.92!MYC;;chr6:135502408..135502459,+!p2@MYB!0.34!1.53!MYB;;chr6:41040849..41040860,+!p3@NFYA!0.34!1.53!NFYA;;chr1:211432810..211432817,+!p9@RCOR3!0.34!1.53!RCOR3;;chr1:235491168..235491187,-!p3@ARID4B!0.34!1.53!ARID4B;;chr7:111846741..111846776,+!p1@ZNF277!0.33!39.09!ZNF277;;chr2:145277640..145277771,-!p1@ZEB2!0.33!25.68!ZEB2;;chr4:331578..331615,+!p1@ZNF141!0.33!20.31!ZNF141;;chr8:146126799..146126865,-!p1@COMMD5,p1@ZNF250!0.33!17.63!ZNF250;;chr19:53193731..53193767,-!p1@ZNF83!0.33!16.86!ZNF83;;chr15:77197655..77197716,-!p1@SCAPER!0.33!16.86!SCAPER;;chr16:68119250..68119293,+!p2@NFATC3!0.33!14.56!NFATC3;;chr1:93544821..93544861,+!p1@MTF2!0.33!14.56!MTF2;;chr9:125667518..125667588,-!p1@RC3H2!0.33!12.26!RC3H2;;chr13:74708504..74708549,-!p1@KLF12!0.33!8.05!KLF12;;chr19:38270215..38270251,-!p1@ZNF573!0.33!7.28!ZNF573;;chr6:126102292..126102329,+!p3@NCOA7!0.33!5.75!NCOA7;;chr14:64971438..64971450,+!p2@ZBTB1!0.33!3.83!ZBTB1;;chr10:63809077..63809089,+!p5@ARID5B!0.33!3.45!ARID5B;;chr12:432372..432377,-!p3@KDM5A!0.33!2.30!KDM5A;;chr7:128577972..128578047,+!p1@IRF5!0.33!2.30!IRF5;;chr4:185395191..185395226,-!p4@IRF2!0.33!1.92!IRF2;;chr17:42295777..42295816,-!p7@UBTF!0.33!1.53!UBTF;;chrX:131624020..131624048,-!p9@MBNL3!0.33!1.53!MBNL3;;chr8:71316403..71316427,-!p6@NCOA2!0.33!1.53!NCOA2;;chr5:133450458..133450469,+!p4@TCF7!0.33!1.15!TCF7;;chr5:142780189..142780223,-!p6@NR3C1!0.33!1.15!NR3C1;;chr6:106546922..106546925,+!p22@PRDM1!0.33!1.15!PRDM1;;chr7:50343800..50343811,+!p8@IKZF1!0.33!1.15!IKZF1;;chr8:123793234..123793246,+!p18@ZHX2!0.33!1.15!ZHX2;;chr8:123875520..123875536,+!p7@ZHX2!0.33!1.15!ZHX2;;chr9:117139023..117139030,-!p5@AKNA!0.33!1.15!AKNA;;chr14:75746664..75746683,+!p7@FOS!0.33!1.15!FOS;;chr14:75746687..75746702,+!p10@FOS!0.33!1.15!FOS;;chr14:75746781..75746799,+!p6@FOS!0.33!1.15!FOS;;chr14:75747296..75747329,+!p4@FOS!0.33!1.15!FOS;;chr14:99737996..99738007,-!p5@BCL11B!0.33!1.15!BCL11B;;chr15:57210772..57210803,-!p7@ZNF280D!0.33!1.15!ZNF280D;;chr17:36871943..36871947,+!p8@MLLT6!0.33!1.15!MLLT6;;chr17:41738750..41738764,-!p4@MEOX1!0.33!1.15!MEOX1;;chr17:4981535..4981551,+!p2@ZFP3!0.33!1.15!ZFP3;;chr18:77155942..77155951,+!p3@NFATC1!0.33!1.15!NFATC1;;chr19:37095841..37095855,+!p2@ZNF382!0.33!1.15!ZNF382;;chr19:37825634..3782564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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790,CL:0002425,CL:0002427
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13239.11786-124B4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13239.11786-124B4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13239.11786-124B4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13239.11786-124B4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13239.11786-124B4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11786-124B4
 |is_a=EFO:0002091;;FF:0011122
 |is_obsolete=
+|library_id=CNhs13239
+|library_id_phase_based=2:CNhs13239
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11786
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11786
 |name=CD4+CD25-CD45RA- memory conventional T cells, donor1
 |namespace=
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13239,LSID1006,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 63: / Line 79: @@
 |rna_weight_ug=0.964
 |sample_age=25
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 84: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11786-124B4;search_select_hide=table117:FF:11786-124B4
 }}

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FF:11786-124B4: Difference between revisions

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Latest revision as of 18:20, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0