FF:11877-125C5: Difference between revisions

Latest revision as of 18:25, 4 June 2020

Name:	CD14+ monocytes - treated with Cryptococcus, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13487
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	51
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D4-8
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004834

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13487		CAGE		DRX008145		DRR009017

Accession ID Hg19

Library id		BAM		CTSS
CNhs13487		DRZ000442		DRZ001827

Accession ID Hg38

Library id		BAM		CTSS
CNhs13487		DRZ011792		DRZ013177

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.26
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.104
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.464
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.485
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.105
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.189
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.105
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.772
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.105
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.26
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.189
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.369
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.376
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.878
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.189
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.189
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.21
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.114
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0763
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.464
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.814
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.32
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.78
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.639
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.559
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.845
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.377
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.189
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.507
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.541
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.26
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.233
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.746
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.57
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.189
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.73
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.416
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.105
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.521
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.105
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.105
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.369
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.105
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.97
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.105
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.32
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.105
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.105
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.189
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13487

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.66306e-7
MA0003.1	MA0003.1	0.286
MA0004.1	MA0004.1	0.358
MA0006.1	MA0006.1	0.872
MA0007.1	MA0007.1	0.778
MA0009.1	MA0009.1	0.286
MA0014.1	MA0014.1	0.922
MA0017.1	MA0017.1	0.0374
MA0018.2	MA0018.2	0.0919
MA0019.1	MA0019.1	0.816
MA0024.1	MA0024.1	0.0017
MA0025.1	MA0025.1	0.0167
MA0027.1	MA0027.1	0.63
MA0028.1	MA0028.1	0.132
MA0029.1	MA0029.1	0.42
MA0030.1	MA0030.1	0.4
MA0031.1	MA0031.1	0.593
MA0035.2	MA0035.2	0.327
MA0038.1	MA0038.1	0.0648
MA0039.2	MA0039.2	0.602
MA0040.1	MA0040.1	0.387
MA0041.1	MA0041.1	0.387
MA0042.1	MA0042.1	0.657
MA0043.1	MA0043.1	3.41601e-4
MA0046.1	MA0046.1	0.0406
MA0047.2	MA0047.2	0.932
MA0048.1	MA0048.1	0.939
MA0050.1	MA0050.1	0.00307
MA0051.1	MA0051.1	0.288
MA0052.1	MA0052.1	0.131
MA0055.1	MA0055.1	0.772
MA0057.1	MA0057.1	0.663
MA0058.1	MA0058.1	0.131
MA0059.1	MA0059.1	0.269
MA0060.1	MA0060.1	3.56396e-11
MA0061.1	MA0061.1	1.35825e-5
MA0062.2	MA0062.2	0.573
MA0065.2	MA0065.2	0.0081
MA0066.1	MA0066.1	0.0373
MA0067.1	MA0067.1	1.04806e-4
MA0068.1	MA0068.1	0.116
MA0069.1	MA0069.1	0.761
MA0070.1	MA0070.1	0.116
MA0071.1	MA0071.1	0.169
MA0072.1	MA0072.1	0.965
MA0073.1	MA0073.1	0.335
MA0074.1	MA0074.1	0.164
MA0076.1	MA0076.1	0.117
MA0077.1	MA0077.1	0.156
MA0078.1	MA0078.1	0.49
MA0079.2	MA0079.2	0.384
MA0080.2	MA0080.2	6.59839e-15
MA0081.1	MA0081.1	2.59886e-4
MA0083.1	MA0083.1	0.846
MA0084.1	MA0084.1	0.341
MA0087.1	MA0087.1	0.796
MA0088.1	MA0088.1	0.548
MA0090.1	MA0090.1	0.179
MA0091.1	MA0091.1	0.474
MA0092.1	MA0092.1	0.265
MA0093.1	MA0093.1	0.355
MA0099.2	MA0099.2	4.37461e-41
MA0100.1	MA0100.1	0.494
MA0101.1	MA0101.1	2.41423e-4
MA0102.2	MA0102.2	3.63202e-6
MA0103.1	MA0103.1	0.57
MA0104.2	MA0104.2	0.678
MA0105.1	MA0105.1	6.16294e-9
MA0106.1	MA0106.1	0.975
MA0107.1	MA0107.1	1.58225e-5
MA0108.2	MA0108.2	0.026
MA0111.1	MA0111.1	0.498
MA0112.2	MA0112.2	2.92458e-5
MA0113.1	MA0113.1	0.944
MA0114.1	MA0114.1	0.166
MA0115.1	MA0115.1	0.844
MA0116.1	MA0116.1	3.14358e-4
MA0117.1	MA0117.1	0.115
MA0119.1	MA0119.1	0.41
MA0122.1	MA0122.1	0.967
MA0124.1	MA0124.1	0.294
MA0125.1	MA0125.1	0.289
MA0131.1	MA0131.1	0.449
MA0135.1	MA0135.1	0.691
MA0136.1	MA0136.1	3.23297e-14
MA0137.2	MA0137.2	0.731
MA0138.2	MA0138.2	0.988
MA0139.1	MA0139.1	0.993
MA0140.1	MA0140.1	0.268
MA0141.1	MA0141.1	0.0493
MA0142.1	MA0142.1	0.324
MA0143.1	MA0143.1	0.458
MA0144.1	MA0144.1	0.229
MA0145.1	MA0145.1	0.284
MA0146.1	MA0146.1	0.112
MA0147.1	MA0147.1	0.726
MA0148.1	MA0148.1	0.782
MA0149.1	MA0149.1	0.209
MA0150.1	MA0150.1	1.41617e-18
MA0152.1	MA0152.1	0.529
MA0153.1	MA0153.1	0.00264
MA0154.1	MA0154.1	0.00129
MA0155.1	MA0155.1	0.647
MA0156.1	MA0156.1	4.08402e-7
MA0157.1	MA0157.1	0.84
MA0159.1	MA0159.1	0.00971
MA0160.1	MA0160.1	0.0206
MA0162.1	MA0162.1	0.983
MA0163.1	MA0163.1	3.30173e-7
MA0164.1	MA0164.1	0.587
MA0258.1	MA0258.1	0.00271
MA0259.1	MA0259.1	0.526

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13487

Novel motif	Logo	P-value
1	1	0.106
10	10	0.0226
100	100	0.686
101	101	0.843
102	102	0.492
103	103	0.236
104	104	0.574
105	105	0.211
106	106	5.35409e-4
107	107	0.22
108	108	0.928
109	109	0.218
11	11	0.156
110	110	0.282
111	111	0.0696
112	112	0.237
113	113	0.552
114	114	0.0206
115	115	0.307
116	116	0.755
117	117	0.0725
118	118	0.184
119	119	0.111
12	12	0.342
120	120	0.966
121	121	0.315
122	122	0.557
123	123	0.0743
124	124	0.607
125	125	0.599
126	126	0.222
127	127	0.267
128	128	0.0197
129	129	0.391
13	13	0.191
130	130	0.136
131	131	0.569
132	132	0.0612
133	133	0.648
134	134	0.498
135	135	0.435
136	136	0.9
137	137	0.0148
138	138	0.159
139	139	0.0359
14	14	0.506
140	140	0.15
141	141	0.307
142	142	0.53
143	143	0.0155
144	144	0.597
145	145	0.511
146	146	0.481
147	147	0.35
148	148	0.0105
149	149	0.589
15	15	0.145
150	150	0.48
151	151	0.352
152	152	0.119
153	153	0.443
154	154	0.474
155	155	0.351
156	156	0.756
157	157	0.251
158	158	0.044
159	159	0.703
16	16	0.313
160	160	0.352
161	161	0.47
162	162	0.325
163	163	0.229
164	164	0.153
165	165	0.19
166	166	0.447
167	167	0.217
168	168	0.411
169	169	0.0079
17	17	0.184
18	18	0.0924
19	19	0.325
2	2	1
20	20	0.378
21	21	0.379
22	22	0.201
23	23	0.051
24	24	0.308
25	25	0.371
26	26	0.0603
27	27	0.965
28	28	0.379
29	29	0.367
3	3	0.12
30	30	0.632
31	31	0.718
32	32	0.986
33	33	0.44
34	34	0.428
35	35	0.181
36	36	0.177
37	37	0.0592
38	38	0.341
39	39	0.731
4	4	0.633
40	40	0.223
41	41	0.0115
42	42	0.419
43	43	0.0373
44	44	0.774
45	45	0.61
46	46	0.136
47	47	0.48
48	48	0.447
49	49	0.102
5	5	0.246
50	50	0.988
51	51	0.361
52	52	0.275
53	53	0.331
54	54	0.301
55	55	0.339
56	56	0.66
57	57	0.762
58	58	0.113
59	59	0.0993
6	6	0.621
60	60	0.0449
61	61	0.55
62	62	0.0452
63	63	0.486
64	64	0.434
65	65	0.206
66	66	0.323
67	67	0.536
68	68	0.73
69	69	0.953
7	7	0.261
70	70	0.0143
71	71	0.0337
72	72	0.265
73	73	0.117
74	74	0.0897
75	75	0.106
76	76	0.228
77	77	0.34
78	78	0.0979
79	79	0.152
8	8	0.336
80	80	0.207
81	81	0.357
82	82	0.0958
83	83	0.0582
84	84	0.374
85	85	0.00807
86	86	0.039
87	87	0.447
88	88	0.569
89	89	0.16
9	9	0.377
90	90	0.0533
91	91	0.248
92	92	0.173
93	93	0.347
94	94	0.044
95	95	0.373
96	96	0.197
97	97	0.904
98	98	0.113
99	99	0.151

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13487

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011105 human CD14-positive monocytes - treated with Cryptococcus sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000634 (Cryptococcus treatment sample)
0011105 (human CD14-positive monocytes - treated with Cryptococcus sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00004834
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008145;DRR009017;DRZ000442;DRZ001827;DRZ011792;DRZ013177
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000634,FF:0011105
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.94!874.94!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.74!552.36!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.52!332.95!TFEC;;chr12:54778471..54778528,-!p1@ZNF385A!2.37!233.88!ZNF385A;;chr21:34442439..34442455,+!p1@OLIG1!2.24!171.93!OLIG1;;chr10:64576105..64576133,-!p1@EGR2!2.07!230.61!EGR2;;chr11:47399947..47399961,-!p3@SPI1!2.02!103.70!SPI1;;chr11:47400062..47400077,-!p2@SPI1!1.99!96.61!SPI1;;chr16:85932760..85932775,+!p1@IRF8!1.97!93.33!IRF8;;chr6:106534192..106534224,+!p1@PRDM1!1.95!237.43!PRDM1;;chr10:35484053..35484076,+!p1@CREM!1.92!195.95!CREM;;chr1:25256756..25256774,-!p1@RUNX3!1.90!144.37!RUNX3;;chr20:39317868..39317884,-!p1@MAFB!1.82!720.20!MAFB;;chr11:47400032..47400043,-!p5@SPI1!1.82!64.95!SPI1;;chr19:50432132..50432217,+!p2@ATF5!1.80!74.23!ATF5;;chr14:35872453..35872485,-!p2@NFKBIA!1.78!140.55!NFKBIA;;chr2:70142232..70142251,+!p1@MXD1!1.76!305.65!MXD1;;chr10:31288398..31288455,-!p2@ZNF438!1.76!64.95!ZNF438;;chr11:47399996..47400014,-!p4@SPI1!1.76!56.22!SPI1;;chr10:31288370..31288393,-!p3@ZNF438!1.75!54.85!ZNF438;;chr21:34398234..34398250,+!p1@OLIG2!1.72!51.58!OLIG2;;chr6:106534230..106534254,+!p2@PRDM1!1.66!108.34!PRDM1;;chr10:64018918..64018936,+!p2@ZNF365!1.66!44.21!ZNF365;;chr19:45971246..45971265,+!p1@FOSB!1.60!686.36!FOSB;;chr2:145277640..145277771,-!p1@ZEB2!1.55!438.29!ZEB2;;chr21:30671690..30671762,+!p2@BACH1!1.54!109.71!BACH1;;chr21:36260295..36260310,-!p3@RUNX1!1.54!53.76!RUNX1;;chr10:51572408..51572454,+!p3@NCOA4!1.53!183.12!NCOA4;;chr7:128577972..128578047,+!p1@IRF5!1.52!50.49!IRF5;;chr12:72056800..72056834,+!p1@THAP2!1.52!43.12!THAP2;;chr3:12330560..12330579,+!p1@PPARG!1.52!36.30!PPARG;;chr16:31885093..31885165,+!p1@ZNF267!1.50!442.11!ZNF267;;chr9:102584159..102584174,+!p2@NR4A3!1.49!52.67!NR4A3;;chr20:48599506..48599526,+!p1@SNAI1!1.48!180.12!SNAI1;;chr10:51572339..51572376,+!p4@NCOA4!1.48!63.86!NCOA4;;chr12:54778351..54778378,-!p6@ZNF385A!1.48!29.20!ZNF385A;;chr12:52445218..52445237,+!p1@NR4A1!1.47!345.23!NR4A1;;chr6:44233252..44233296,-!p1@NFKBIE!1.46!264.45!NFKBIE;;chr2:145275162..145275202,-!p2@ZEB2!1.46!159.65!ZEB2;;chr12:48298765..48298783,-!p2@VDR!1.46!57.58!VDR;;chr14:35873947..35873965,-!p1@NFKBIA!1.45!1656.54!NFKBIA;;chr13:41593425..41593480,-!p1@ELF1!1.44!161.29!ELF1;;chr2:68592394..68592405,+!p2@PLEK!1.44!26.74!PLEK;;chr1:212782094..212782109,+!p1@ATF3!1.43!676.53!ATF3;;chr2:157189180..157189290,-!p1@NR4A2!1.43!131.54!NR4A2;;chr6:144385698..144385742,-!p2@PLAGL1!1.41!30.02!PLAGL1;;chr11:47400045..47400060,-!p6@SPI1!1.41!24.56!SPI1;;chr20:48807351..48807384,+!p1@CEBPB!1.40!2328.71!CEBPB;;chr9:102584262..102584276,+!p1@NR4A3!1.40!52.67!NR4A3;;chr10:35484090..35484104,+!p6@CREM!1.40!24.29!CREM;;chr21:30671235..30671253,+!p1@BACH1!1.39!288.19!BACH1;;chr3:12329397..12329433,+!p2@PPARG!1.39!52.40!PPARG;;chr1:25256439..25256476,-!p3@RUNX3!1.38!23.20!RUNX3;;chr6:15246200..15246214,+!p2@JARID2!1.36!59.77!JARID2;;chr21:34442540..34442560,+!p2@OLIG1!1.36!21.83!OLIG1;;chrX:129244454..129244488,-!p1@ELF4!1.35!149.55!ELF4;;chr14:35872962..35873025,-!p3@NFKBIA!1.35!52.67!NFKBIA;;chr12:72056749..72056767,+!p6@THAP2!1.35!23.74!THAP2;;chr19:36391434..36391450,-!p1@NFKBID!1.34!40.66!NFKBID;;chr19:19496539..19496576,+!p8@GATAD2A!1.34!36.57!GATAD2A;;chrX:129244430..129244442,-!p5@ELF4!1.33!20.47!ELF4;;chr11:47399920..47399931,-!p7@SPI1!1.33!20.47!SPI1;;chr4:103422499..103422632,+!p1@NFKB1!1.32!401.17!NFKB1;;chr2:61108695..61108753,+!p1@REL!1.32!134.82!REL;;chr19:33793430..33793447,-!p1@CEBPA!1.32!82.69!CEBPA;;chr9:102584128..102584144,+!p3@NR4A3!1.32!37.39!NR4A3;;chr7:50344289..50344323,+!p1@IKZF1!1.30!18.83!IKZF1;;chr12:72056773..72056796,+!p3@THAP2!1.28!23.20!THAP2;;chr1:157108130..157108173,-!p1@ETV3!1.27!125.54!ETV3;;chr22:38597987..38598021,+!p2@MAFF!1.26!103.43!MAFF;;chr10:104154246..104154347,+!p3@NFKB2!1.26!103.43!NFKB2;;chr4:106068026..106068084,+!p1@TET2!1.25!149.55!TET2;;chr10:104155480..104155534,+!p2@NFKB2!1.25!107.80!NFKB2;;chr8:22550982..22550999,-!p1@EGR3!1.25!46.94!EGR3;;chr18:3449720..3449749,+!p2@TGIF1!1.25!35.48!TGIF1;;chr6:391743..391759,+!p1@IRF4!1.25!16.92!IRF4;;chr19:45251395..45251432,+!p8@BCL3!1.25!16.65!BCL3;;chr12:96588279..96588299,+!p4@ELK3!1.24!75.87!ELK3;;chr2:97202480..97202499,+!p1@ARID5A!1.23!157.74!ARID5A;;chr19:45252008..45252024,+!p2@BCL3!1.23!52.40!BCL3;;chr19:54041669..54041697,+!p2@ZNF331!1.23!15.83!ZNF331;;chr21:30672433..30672464,+!p6@BACH1!1.23!15.83!BACH1;;chr12:96588219..96588263,+!p2@ELK3!1.22!109.98!ELK3;;chr2:238600998..238601013,+!p5@LRRFIP1!1.22!15.56!LRRFIP1;;chrX:153305787..153305807,-!p3@MECP2!1.22!15.56!MECP2;;chr17:38497662..38497713,+!p4@RARA!1.21!17.74!RARA;;chr1:37940170..37940190,+!p1@ZC3H12A!1.20!178.48!ZC3H12A;;chr12:48298785..48298828,-!p1@VDR!1.20!78.32!VDR;;chr19:45250948..45250998,+!p3@BCL3!1.20!37.12!BCL3;;chr19:50432104..50432126,+!p6@ATF5!1.20!15.01!ATF5;;chr1:25291620..25291635,-!p4@RUNX3!1.20!14.74!RUNX3;;chr18:3449618..3449634,+!p13@TGIF1!1.19!18.01!TGIF1;;chr8:80679993..80680011,-!p1@HEY1!1.18!20.47!HEY1;;chr2:70314240..70314256,+!p4@PCBP1!1.17!28.66!PCBP1;;chr9:129567282..129567353,+!p1@ZBTB43!1.16!176.30!ZBTB43;;chr12:11802753..11802834,+!p2@ETV6!1.16!66.04!ETV6;;chr10:104155659..104155676,+!p4@NFKB2!1.16!16.92!NFKB2;;chr6:106535598..106535637,+!p7@PRDM1!1.15!13.10!PRDM1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.14!68.50!LRRFIP1;;chr20:48807648..48807671,+!p9@CEBPB!1.14!18.56!CEBPB;;chr3:170075436..170075520,+!p1@SKIL!1.13!266.90!SKIL;;chr2:145277882..145277967,-!p3@ZEB2!1.13!21.83!ZEB2;;chr8:53373491..53373506,-!p4@ST18!1.13!12.55!ST18;;chr2:28615716..28615733,+!p1@FOSL2!1.12!568.46!FOSL2;;chr10:31288329..31288353,-!p7@ZNF438!1.12!12.28!ZNF438;;chr14:64971014..64971044,+!p4@ZBTB1!1.11!19.38!ZBTB1;;chr19:13213662..13213686,-!p1@LYL1!1.11!17.47!LYL1;;chr19:54058073..54058088,+!p1@ZNF331!1.11!12.01!ZNF331;;chr1:156470515..156470542,-!p2@MEF2D!1.10!60.31!MEF2D;;chr6:12012249..12012266,+!p5@HIVEP1!1.10!20.20!HIVEP1;;chr7:115670792..115670797,-!p2@TFEC!1.10!11.73!TFEC;;chr4:103423079..103423112,+!p4@NFKB1!1.10!11.46!NFKB1;;chr21:36421535..36421610,-!p2@RUNX1!1.09!40.66!RUNX1;;chr2:185463247..185463263,+!p1@ZNF804A!1.09!19.92!ZNF804A;;chr17:79881332..79881348,-!p3@MAFG!1.08!16.10!MAFG;;chr6:12012170..12012245,+!p1@HIVEP1!1.07!54.31!HIVEP1;;chr12:96588368..96588394,+!p3@ELK3!1.07!28.93!ELK3;;chr8:72756063..72756125,-!p1@MSC!1.07!22.11!MSC;;chr20:48807456..48807475,+!p3@CEBPB!1.07!20.74!CEBPB;;chr20:48807171..48807234,+!p4@CEBPB!1.06!23.20!CEBPB;;chr19:45254529..45254561,+!p10@BCL3!1.06!14.19!BCL3;;chr19:19496624..19496660,+!p3@GATAD2A!1.05!47.76!GATAD2A;;chr7:17338266..17338282,+!p1@AHR!1.04!109.44!AHR;;chr1:156470494..156470505,-!p3@MEF2D!1.04!14.46!MEF2D;;chr7:149470641..149470694,-!p1@ZNF467!1.03!44.48!ZNF467;;chr10:35484804..35484902,+!p2@CREM!1.03!38.21!CREM;;chr17:79885537..79885554,-!p2@MAFG!1.03!18.83!MAFG;;chr18:3449586..3449617,+!p8@TGIF1!1.03!15.56!TGIF1;;chr9:137217986..137218049,+!p3@RXRA!1.02!27.29!RXRA;;chr2:231280954..231280965,+!p2@SP100!1.02!17.47!SP100;;chr14:35872494..35872511,-!p5@NFKBIA!1.02!12.83!NFKBIA;;chr10:104155455..104155479,+!p1@NFKB2!1.01!138.64!NFKB2;;chr6:20403916..20403965,+!p3@E2F3!1.01!42.03!E2F3;;chr20:48809000..48809053,+!p12@CEBPB!1.00!12.01!CEBPB;;chr14:35872414..35872425,-!p7@NFKBIA!1.00!10.10!NFKBIA;;chr11:615942..615957,-!p1@IRF7!0.99!85.42!IRF7;;chr2:28618532..28618610,+!p4@FOSL2!0.99!15.28!FOSL2;;chr5:142782823..142782854,-!p3@NR3C1!0.99!12.83!NR3C1;;chr7:17338324..17338341,+!p3@AHR!0.98!29.47!AHR;;chr18:3448455..3448480,+!p5@TGIF1!0.98!16.10!TGIF1;;chr18:3449695..3449712,+!p9@TGIF1!0.98!13.37!TGIF1;;chr2:70167296..70167306,+!p3@MXD1!0.98!13.37!MXD1;;chr2:113999360..113999386,-!p4@PAX8!0.98!8.46!PAX8;;chr17:38474489..38474548,+!p1@RARA!0.97!272.36!RARA;;chr20:48807615..48807644,+!p6@CEBPB!0.97!14.19!CEBPB;;chr9:117150254..117150271,-!p1@AKNA!0.96!22.65!AKNA;;chr2:61108771..61108789,+!p4@REL!0.96!12.55!REL;;chr3:101546827..101546847,+!p2@NFKBIZ!0.96!11.46!NFKBIZ;;chr19:12902289..12902307,+!p1@JUNB!0.95!1887.69!JUNB;;chr19:45251943..45252006,+!p1@BCL3!0.95!214.50!BCL3;;chr6:15246261..15246312,+!p1@JARID2!0.95!197.58!JARID2;;chr12:124873852..124873881,-!p3@NCOR2!0.95!49.12!NCOR2;;chr6:12011943..12012015,+!p2@HIVEP1!0.95!25.93!HIVEP1;;chr20:48807143..48807165,+!p11@CEBPB!0.95!12.01!CEBPB;;chr13:41593392..41593403,-!p7@ELF1!0.95!7.91!ELF1;;chr18:3449527..3449582,+!p6@TGIF1!0.94!15.01!TGIF1;;chr21:36260343..36260402,-!p6@RUNX1!0.94!12.55!RUNX1;;chr5:71803177..71803255,-!p1@ZNF366!0.94!7.64!ZNF366;;chr2:74730430..74730451,-!p1@LBX2!0.93!12.55!LBX2;;chr2:192015701..192015743,-!p1@STAT4!0.93!10.37!STAT4;;chr1:38325227..38325246,-!p2@MTF1!0.93!10.37!MTF1;;chr21:36260980..36261011,-!p1@RUNX1!0.92!218.60!RUNX1;;chr11:65430554..65430579,-!p3@RELA!0.92!19.10!RELA;;chr2:61108808..61108821,+!p3@REL!0.92!9.28!REL;;chr2:231090471..231090504,+!p2@SP140!0.92!7.37!SP140;;chr3:126191157..126191171,-!p4@ZXDC!0.92!7.37!ZXDC;;chr1:25291648..25291665,-!p7@RUNX3!0.92!7.37!RUNX3;;chr5:88178983..88179012,-!p1@MEF2C!0.91!57.04!MEF2C;;chr4:81104895..81104920,+!p2@PRDM8!0.91!10.92!PRDM8;;chr3:18466660..18466676,-!p5@SATB1!0.91!8.46!SATB1;;chr3:12329464..12329472,+!p6@PPARG!0.91!7.10!PPARG;;chr9:88969303..88969335,-!p1@ZCCHC6!0.90!67.95!ZCCHC6;;chr10:35416142..35416169,+!p3@CREM!0.90!19.10!CREM;;chr1:221052776..221052799,+!p1@HLX!0.90!12.83!HLX;;chr2:70142189..70142223,+!p2@MXD1!0.89!50.21!MXD1;;chr3:39195037..39195069,-!p2@CSRNP1!0.89!43.94!CSRNP1;;chr13:41635029..41635044,-!p4@ELF1!0.89!14.74!ELF1;;chr19:45254508..45254528,+!p12@BCL3!0.89!7.37!BCL3;;chr7:137620684..137620711,-!p4@CREB3L2!0.89!6.82!CREB3L2;;chr17:38498402..38498445,+!p3@RARA!0.88!24.83!RARA;;chr14:35872926..35872951,-!p4@NFKBIA!0.88!9.55!NFKBIA;;chr2:145275228..145275241,-!p11@ZEB2!0.88!8.19!ZEB2;;chr3:101568349..101568365,+!p1@NFKBIZ!0.87!353.14!NFKBIZ;;chr9:88969339..88969422,-!p2@ZCCHC6!0.87!53.22!ZCCHC6;;chr2:208394817..208394834,+!p3@CREB1!0.87!27.29!CREB1;;chr6:15246217..152462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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=FF:0000625,FF:0000634,FF:0011105,FF:11877-125C5
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor2.CNhs13487.11877-125C5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor2.CNhs13487.11877-125C5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor2.CNhs13487.11877-125C5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor2.CNhs13487.11877-125C5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor2.CNhs13487.11877-125C5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11877-125C5
 |is_a=EFO:0002091;;FF:0011105
 |is_obsolete=
+|library_id=CNhs13487
+|library_id_phase_based=2:CNhs13487
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11877
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11877
 |name=CD14+ monocytes - treated with Cryptococcus, donor2
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13487,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 59: / Line 79: @@
 |rna_weight_ug=3.493395
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 80: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11877-125C5;search_select_hide=table117:FF:11877-125C5
 }}

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FF:11877-125C5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:25, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0