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{{f5samples
{{f5samples
|id=FF:11877-125C5
|DRA_sample_Accession=CAGE@SAMD00004834
|name=CD14+ monocytes - treated with Cryptococcus, donor2
|accession_numbers=CAGE;DRX008145;DRR009017;DRZ000442;DRZ001827;DRZ011792;DRZ013177
|sample_id=11877
|ancestors_in_anatomy_facet=
|rna_tube_id=125C5
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|rna_box=125
|rna_position=C5
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=D4-8
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=
|sample_donor(cell lot)=donor2
|sample_sex=male
|sample_age=51
|sample_ethnicity=
|rna_rin=9.2
|rna_od260/230=1.78
|rna_od260/280=2.02
|sample_cell_type=monocyte
|sample_cell_line=
|sample_collaboration=Christine Wells (University of Queensland)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=3.493395
|rna_concentration=0.77631
|sample_note=
|profile_hcage=CNhs13487,LSID1025,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000040,CL:0000048,CL:0000049,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000557,CL:0000559,CL:0000566,CL:0000576,CL:0000723,CL:0000738,CL:0000763,CL:0000766,CL:0000837,CL:0000839,CL:0000860,CL:0000988,CL:0001012,CL:0002009,CL:0002031,CL:0002032,CL:0002057,CL:0002087,CL:0002194,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000634,FF:0011105
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.94!874.94!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.74!552.36!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.52!332.95!TFEC;;chr12:54778471..54778528,-!p1@ZNF385A!2.37!233.88!ZNF385A;;chr21:34442439..34442455,+!p1@OLIG1!2.24!171.93!OLIG1;;chr10:64576105..64576133,-!p1@EGR2!2.07!230.61!EGR2;;chr11:47399947..47399961,-!p3@SPI1!2.02!103.70!SPI1;;chr11:47400062..47400077,-!p2@SPI1!1.99!96.61!SPI1;;chr16:85932760..85932775,+!p1@IRF8!1.97!93.33!IRF8;;chr6:106534192..106534224,+!p1@PRDM1!1.95!237.43!PRDM1;;chr10:35484053..35484076,+!p1@CREM!1.92!195.95!CREM;;chr1:25256756..25256774,-!p1@RUNX3!1.90!144.37!RUNX3;;chr20:39317868..39317884,-!p1@MAFB!1.82!720.20!MAFB;;chr11:47400032..47400043,-!p5@SPI1!1.82!64.95!SPI1;;chr19:50432132..50432217,+!p2@ATF5!1.80!74.23!ATF5;;chr14:35872453..35872485,-!p2@NFKBIA!1.78!140.55!NFKBIA;;chr2:70142232..70142251,+!p1@MXD1!1.76!305.65!MXD1;;chr10:31288398..31288455,-!p2@ZNF438!1.76!64.95!ZNF438;;chr11:47399996..47400014,-!p4@SPI1!1.76!56.22!SPI1;;chr10:31288370..31288393,-!p3@ZNF438!1.75!54.85!ZNF438;;chr21:34398234..34398250,+!p1@OLIG2!1.72!51.58!OLIG2;;chr6:106534230..106534254,+!p2@PRDM1!1.66!108.34!PRDM1;;chr10:64018918..64018936,+!p2@ZNF365!1.66!44.21!ZNF365;;chr19:45971246..45971265,+!p1@FOSB!1.60!686.36!FOSB;;chr2:145277640..145277771,-!p1@ZEB2!1.55!438.29!ZEB2;;chr21:30671690..30671762,+!p2@BACH1!1.54!109.71!BACH1;;chr21:36260295..36260310,-!p3@RUNX1!1.54!53.76!RUNX1;;chr10:51572408..51572454,+!p3@NCOA4!1.53!183.12!NCOA4;;chr7:128577972..128578047,+!p1@IRF5!1.52!50.49!IRF5;;chr12:72056800..72056834,+!p1@THAP2!1.52!43.12!THAP2;;chr3:12330560..12330579,+!p1@PPARG!1.52!36.30!PPARG;;chr16:31885093..31885165,+!p1@ZNF267!1.50!442.11!ZNF267;;chr9:102584159..102584174,+!p2@NR4A3!1.49!52.67!NR4A3;;chr20:48599506..48599526,+!p1@SNAI1!1.48!180.12!SNAI1;;chr10:51572339..51572376,+!p4@NCOA4!1.48!63.86!NCOA4;;chr12:54778351..54778378,-!p6@ZNF385A!1.48!29.20!ZNF385A;;chr12:52445218..52445237,+!p1@NR4A1!1.47!345.23!NR4A1;;chr6:44233252..44233296,-!p1@NFKBIE!1.46!264.45!NFKBIE;;chr2:145275162..145275202,-!p2@ZEB2!1.46!159.65!ZEB2;;chr12:48298765..48298783,-!p2@VDR!1.46!57.58!VDR;;chr14:35873947..35873965,-!p1@NFKBIA!1.45!1656.54!NFKBIA;;chr13:41593425..41593480,-!p1@ELF1!1.44!161.29!ELF1;;chr2:68592394..68592405,+!p2@PLEK!1.44!26.74!PLEK;;chr1:212782094..212782109,+!p1@ATF3!1.43!676.53!ATF3;;chr2:157189180..157189290,-!p1@NR4A2!1.43!131.54!NR4A2;;chr6:144385698..144385742,-!p2@PLAGL1!1.41!30.02!PLAGL1;;chr11:47400045..47400060,-!p6@SPI1!1.41!24.56!SPI1;;chr20:48807351..48807384,+!p1@CEBPB!1.40!2328.71!CEBPB;;chr9:102584262..102584276,+!p1@NR4A3!1.40!52.67!NR4A3;;chr10:35484090..35484104,+!p6@CREM!1.40!24.29!CREM;;chr21:30671235..30671253,+!p1@BACH1!1.39!288.19!BACH1;;chr3:12329397..12329433,+!p2@PPARG!1.39!52.40!PPARG;;chr1:25256439..25256476,-!p3@RUNX3!1.38!23.20!RUNX3;;chr6:15246200..15246214,+!p2@JARID2!1.36!59.77!JARID2;;chr21:34442540..34442560,+!p2@OLIG1!1.36!21.83!OLIG1;;chrX:129244454..129244488,-!p1@ELF4!1.35!149.55!ELF4;;chr14:35872962..35873025,-!p3@NFKBIA!1.35!52.67!NFKBIA;;chr12:72056749..72056767,+!p6@THAP2!1.35!23.74!THAP2;;chr19:36391434..36391450,-!p1@NFKBID!1.34!40.66!NFKBID;;chr19:19496539..19496576,+!p8@GATAD2A!1.34!36.57!GATAD2A;;chrX:129244430..129244442,-!p5@ELF4!1.33!20.47!ELF4;;chr11:47399920..47399931,-!p7@SPI1!1.33!20.47!SPI1;;chr4:103422499..103422632,+!p1@NFKB1!1.32!401.17!NFKB1;;chr2:61108695..61108753,+!p1@REL!1.32!134.82!REL;;chr19:33793430..33793447,-!p1@CEBPA!1.32!82.69!CEBPA;;chr9:102584128..102584144,+!p3@NR4A3!1.32!37.39!NR4A3;;chr7:50344289..50344323,+!p1@IKZF1!1.30!18.83!IKZF1;;chr12:72056773..72056796,+!p3@THAP2!1.28!23.20!THAP2;;chr1:157108130..157108173,-!p1@ETV3!1.27!125.54!ETV3;;chr22:38597987..38598021,+!p2@MAFF!1.26!103.43!MAFF;;chr10:104154246..104154347,+!p3@NFKB2!1.26!103.43!NFKB2;;chr4:106068026..106068084,+!p1@TET2!1.25!149.55!TET2;;chr10:104155480..104155534,+!p2@NFKB2!1.25!107.80!NFKB2;;chr8:22550982..22550999,-!p1@EGR3!1.25!46.94!EGR3;;chr18:3449720..3449749,+!p2@TGIF1!1.25!35.48!TGIF1;;chr6:391743..391759,+!p1@IRF4!1.25!16.92!IRF4;;chr19:45251395..45251432,+!p8@BCL3!1.25!16.65!BCL3;;chr12:96588279..96588299,+!p4@ELK3!1.24!75.87!ELK3;;chr2:97202480..97202499,+!p1@ARID5A!1.23!157.74!ARID5A;;chr19:45252008..45252024,+!p2@BCL3!1.23!52.40!BCL3;;chr19:54041669..54041697,+!p2@ZNF331!1.23!15.83!ZNF331;;chr21:30672433..30672464,+!p6@BACH1!1.23!15.83!BACH1;;chr12:96588219..96588263,+!p2@ELK3!1.22!109.98!ELK3;;chr2:238600998..238601013,+!p5@LRRFIP1!1.22!15.56!LRRFIP1;;chrX:153305787..153305807,-!p3@MECP2!1.22!15.56!MECP2;;chr17:38497662..38497713,+!p4@RARA!1.21!17.74!RARA;;chr1:37940170..37940190,+!p1@ZC3H12A!1.20!178.48!ZC3H12A;;chr12:48298785..48298828,-!p1@VDR!1.20!78.32!VDR;;chr19:45250948..45250998,+!p3@BCL3!1.20!37.12!BCL3;;chr19:50432104..50432126,+!p6@ATF5!1.20!15.01!ATF5;;chr1:25291620..25291635,-!p4@RUNX3!1.20!14.74!RUNX3;;chr18:3449618..3449634,+!p13@TGIF1!1.19!18.01!TGIF1;;chr8:80679993..80680011,-!p1@HEY1!1.18!20.47!HEY1;;chr2:70314240..70314256,+!p4@PCBP1!1.17!28.66!PCBP1;;chr9:129567282..129567353,+!p1@ZBTB43!1.16!176.30!ZBTB43;;chr12:11802753..11802834,+!p2@ETV6!1.16!66.04!ETV6;;chr10:104155659..104155676,+!p4@NFKB2!1.16!16.92!NFKB2;;chr6:106535598..106535637,+!p7@PRDM1!1.15!13.10!PRDM1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.14!68.50!LRRFIP1;;chr20:48807648..48807671,+!p9@CEBPB!1.14!18.56!CEBPB;;chr3:170075436..170075520,+!p1@SKIL!1.13!266.90!SKIL;;chr2:145277882..145277967,-!p3@ZEB2!1.13!21.83!ZEB2;;chr8:53373491..53373506,-!p4@ST18!1.13!12.55!ST18;;chr2:28615716..28615733,+!p1@FOSL2!1.12!568.46!FOSL2;;chr10:31288329..31288353,-!p7@ZNF438!1.12!12.28!ZNF438;;chr14:64971014..64971044,+!p4@ZBTB1!1.11!19.38!ZBTB1;;chr19:13213662..13213686,-!p1@LYL1!1.11!17.47!LYL1;;chr19:54058073..54058088,+!p1@ZNF331!1.11!12.01!ZNF331;;chr1:156470515..156470542,-!p2@MEF2D!1.10!60.31!MEF2D;;chr6:12012249..12012266,+!p5@HIVEP1!1.10!20.20!HIVEP1;;chr7:115670792..115670797,-!p2@TFEC!1.10!11.73!TFEC;;chr4:103423079..103423112,+!p4@NFKB1!1.10!11.46!NFKB1;;chr21:36421535..36421610,-!p2@RUNX1!1.09!40.66!RUNX1;;chr2:185463247..185463263,+!p1@ZNF804A!1.09!19.92!ZNF804A;;chr17:79881332..79881348,-!p3@MAFG!1.08!16.10!MAFG;;chr6:12012170..12012245,+!p1@HIVEP1!1.07!54.31!HIVEP1;;chr12:96588368..96588394,+!p3@ELK3!1.07!28.93!ELK3;;chr8:72756063..72756125,-!p1@MSC!1.07!22.11!MSC;;chr20:48807456..48807475,+!p3@CEBPB!1.07!20.74!CEBPB;;chr20:48807171..48807234,+!p4@CEBPB!1.06!23.20!CEBPB;;chr19:45254529..45254561,+!p10@BCL3!1.06!14.19!BCL3;;chr19:19496624..19496660,+!p3@GATAD2A!1.05!47.76!GATAD2A;;chr7:17338266..17338282,+!p1@AHR!1.04!109.44!AHR;;chr1:156470494..156470505,-!p3@MEF2D!1.04!14.46!MEF2D;;chr7:149470641..149470694,-!p1@ZNF467!1.03!44.48!ZNF467;;chr10:35484804..35484902,+!p2@CREM!1.03!38.21!CREM;;chr17:79885537..79885554,-!p2@MAFG!1.03!18.83!MAFG;;chr18:3449586..3449617,+!p8@TGIF1!1.03!15.56!TGIF1;;chr9:137217986..137218049,+!p3@RXRA!1.02!27.29!RXRA;;chr2:231280954..231280965,+!p2@SP100!1.02!17.47!SP100;;chr14:35872494..35872511,-!p5@NFKBIA!1.02!12.83!NFKBIA;;chr10:104155455..104155479,+!p1@NFKB2!1.01!138.64!NFKB2;;chr6:20403916..20403965,+!p3@E2F3!1.01!42.03!E2F3;;chr20:48809000..48809053,+!p12@CEBPB!1.00!12.01!CEBPB;;chr14:35872414..35872425,-!p7@NFKBIA!1.00!10.10!NFKBIA;;chr11:615942..615957,-!p1@IRF7!0.99!85.42!IRF7;;chr2:28618532..28618610,+!p4@FOSL2!0.99!15.28!FOSL2;;chr5:142782823..142782854,-!p3@NR3C1!0.99!12.83!NR3C1;;chr7:17338324..17338341,+!p3@AHR!0.98!29.47!AHR;;chr18:3448455..3448480,+!p5@TGIF1!0.98!16.10!TGIF1;;chr18:3449695..3449712,+!p9@TGIF1!0.98!13.37!TGIF1;;chr2:70167296..70167306,+!p3@MXD1!0.98!13.37!MXD1;;chr2:113999360..113999386,-!p4@PAX8!0.98!8.46!PAX8;;chr17:38474489..38474548,+!p1@RARA!0.97!272.36!RARA;;chr20:48807615..48807644,+!p6@CEBPB!0.97!14.19!CEBPB;;chr9:117150254..117150271,-!p1@AKNA!0.96!22.65!AKNA;;chr2:61108771..61108789,+!p4@REL!0.96!12.55!REL;;chr3:101546827..101546847,+!p2@NFKBIZ!0.96!11.46!NFKBIZ;;chr19:12902289..12902307,+!p1@JUNB!0.95!1887.69!JUNB;;chr19:45251943..45252006,+!p1@BCL3!0.95!214.50!BCL3;;chr6:15246261..15246312,+!p1@JARID2!0.95!197.58!JARID2;;chr12:124873852..124873881,-!p3@NCOR2!0.95!49.12!NCOR2;;chr6:12011943..12012015,+!p2@HIVEP1!0.95!25.93!HIVEP1;;chr20:48807143..48807165,+!p11@CEBPB!0.95!12.01!CEBPB;;chr13:41593392..41593403,-!p7@ELF1!0.95!7.91!ELF1;;chr18:3449527..3449582,+!p6@TGIF1!0.94!15.01!TGIF1;;chr21:36260343..36260402,-!p6@RUNX1!0.94!12.55!RUNX1;;chr5:71803177..71803255,-!p1@ZNF366!0.94!7.64!ZNF366;;chr2:74730430..74730451,-!p1@LBX2!0.93!12.55!LBX2;;chr2:192015701..192015743,-!p1@STAT4!0.93!10.37!STAT4;;chr1:38325227..38325246,-!p2@MTF1!0.93!10.37!MTF1;;chr21:36260980..36261011,-!p1@RUNX1!0.92!218.60!RUNX1;;chr11:65430554..65430579,-!p3@RELA!0.92!19.10!RELA;;chr2:61108808..61108821,+!p3@REL!0.92!9.28!REL;;chr2:231090471..231090504,+!p2@SP140!0.92!7.37!SP140;;chr3:126191157..126191171,-!p4@ZXDC!0.92!7.37!ZXDC;;chr1:25291648..25291665,-!p7@RUNX3!0.92!7.37!RUNX3;;chr5:88178983..88179012,-!p1@MEF2C!0.91!57.04!MEF2C;;chr4:81104895..81104920,+!p2@PRDM8!0.91!10.92!PRDM8;;chr3:18466660..18466676,-!p5@SATB1!0.91!8.46!SATB1;;chr3:12329464..12329472,+!p6@PPARG!0.91!7.10!PPARG;;chr9:88969303..88969335,-!p1@ZCCHC6!0.90!67.95!ZCCHC6;;chr10:35416142..35416169,+!p3@CREM!0.90!19.10!CREM;;chr1:221052776..221052799,+!p1@HLX!0.90!12.83!HLX;;chr2:70142189..70142223,+!p2@MXD1!0.89!50.21!MXD1;;chr3:39195037..39195069,-!p2@CSRNP1!0.89!43.94!CSRNP1;;chr13:41635029..41635044,-!p4@ELF1!0.89!14.74!ELF1;;chr19:45254508..45254528,+!p12@BCL3!0.89!7.37!BCL3;;chr7:137620684..137620711,-!p4@CREB3L2!0.89!6.82!CREB3L2;;chr17:38498402..38498445,+!p3@RARA!0.88!24.83!RARA;;chr14:35872926..35872951,-!p4@NFKBIA!0.88!9.55!NFKBIA;;chr2:145275228..145275241,-!p11@ZEB2!0.88!8.19!ZEB2;;chr3:101568349..101568365,+!p1@NFKBIZ!0.87!353.14!NFKBIZ;;chr9:88969339..88969422,-!p2@ZCCHC6!0.87!53.22!ZCCHC6;;chr2:208394817..208394834,+!p3@CREB1!0.87!27.29!CREB1;;chr6:15246217..1524622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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=FF:0000625,FF:0000634,FF:0011105,FF:11877-125C5
|fonse_treatment=FF:0000625,FF:0000634,FF:0011105,FF:11877-125C5
|fonse_treatment_closure=FF:0000625,FF:0000634,FF:0011105,FF:11877-125C5
|fonse_treatment_closure=FF:0000625,FF:0000634,FF:0011105,FF:11877-125C5
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor2.CNhs13487.11877-125C5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor2.CNhs13487.11877-125C5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor2.CNhs13487.11877-125C5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor2.CNhs13487.11877-125C5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor2.CNhs13487.11877-125C5.hg38.nobarcode.ctss.bed.gz
|id=FF:11877-125C5
|is_a=EFO:0002091;;FF:0011105
|is_obsolete=
|library_id=CNhs13487
|library_id_phase_based=2:CNhs13487
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11877
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11877
|name=CD14+ monocytes - treated with Cryptococcus, donor2
|namespace=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs13487,LSID1025,release012,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
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|rna_box=125
|rna_catalog_number=
|rna_concentration=0.77631
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=D4-8
|rna_od260/230=1.78
|rna_od260/280=2.02
|rna_position=C5
|rna_rin=9.2
|rna_sample_type=total RNA
|rna_tube_id=125C5
|rna_weight_ug=3.493395
|sample_age=51
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=monocyte
|sample_collaboration=Christine Wells (University of Queensland)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donor2
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.99790677707004e-256!GO:0005737;cytoplasm;6.73894085484972e-128!GO:0043227;membrane-bound organelle;8.18830482310532e-128!GO:0043231;intracellular membrane-bound organelle;1.83088621008547e-127!GO:0043226;organelle;7.94168323143812e-120!GO:0043229;intracellular organelle;5.59462615678423e-119!GO:0044444;cytoplasmic part;3.8840360260192e-85!GO:0044422;organelle part;2.95080239942288e-73!GO:0044446;intracellular organelle part;1.17633103686665e-71!GO:0044237;cellular metabolic process;1.21857963270879e-71!GO:0044238;primary metabolic process;1.39903823219884e-70!GO:0043170;macromolecule metabolic process;3.05709200419695e-69!GO:0005515;protein binding;3.6545367807811e-69!GO:0032991;macromolecular complex;3.34590157066877e-63!GO:0003723;RNA binding;2.13168814408364e-55!GO:0005634;nucleus;2.87607784582382e-54!GO:0030529;ribonucleoprotein complex;1.39962385831401e-53!GO:0044428;nuclear part;9.14228125487721e-50!GO:0019538;protein metabolic process;4.2963521372669e-48!GO:0044267;cellular protein metabolic process;9.49988406314372e-45!GO:0044260;cellular macromolecule metabolic process;2.87804680745008e-44!GO:0033036;macromolecule localization;4.9413478547801e-44!GO:0045184;establishment of protein localization;3.77662372248425e-43!GO:0015031;protein transport;3.77662372248425e-43!GO:0006412;translation;5.17739206543784e-41!GO:0043233;organelle lumen;9.04282817048617e-41!GO:0031974;membrane-enclosed lumen;9.04282817048617e-41!GO:0008104;protein localization;9.04282817048617e-41!GO:0043283;biopolymer metabolic process;2.35217148475216e-39!GO:0010467;gene expression;2.99670393829288e-38!GO:0005829;cytosol;8.59259712618649e-36!GO:0031090;organelle membrane;2.26701173744292e-34!GO:0016071;mRNA metabolic process;8.37155132206541e-33!GO:0006396;RNA processing;9.45698894150492e-33!GO:0043234;protein complex;3.44431820833827e-32!GO:0031981;nuclear lumen;1.00820844724455e-31!GO:0016043;cellular component organization and biogenesis;2.94412361416736e-30!GO:0009059;macromolecule biosynthetic process;3.23722377439849e-30!GO:0046907;intracellular transport;3.32058837146748e-30!GO:0008380;RNA splicing;9.0641825029119e-30!GO:0006915;apoptosis;1.09203991725783e-29!GO:0012501;programmed cell death;1.11469243657855e-29!GO:0044249;cellular biosynthetic process;2.19358175451335e-29!GO:0009058;biosynthetic process;2.42916361521171e-29!GO:0006886;intracellular protein transport;8.65481231769429e-29!GO:0005840;ribosome;1.34692454102275e-28!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.58750009147952e-28!GO:0006397;mRNA processing;3.18124810450736e-28!GO:0008219;cell death;5.19983617513374e-28!GO:0016265;death;5.19983617513374e-28!GO:0005739;mitochondrion;8.63729297945667e-27!GO:0003735;structural constituent of ribosome;2.85139765935666e-26!GO:0031967;organelle envelope;1.73706942790876e-25!GO:0031975;envelope;3.2797527585198e-25!GO:0033279;ribosomal subunit;3.33066829958418e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.49112040961315e-24!GO:0051649;establishment of cellular localization;8.76448821383541e-24!GO:0051641;cellular localization;5.80460873221286e-23!GO:0065003;macromolecular complex assembly;2.43484044045011e-22!GO:0044445;cytosolic part;5.91264517508335e-22!GO:0005654;nucleoplasm;8.0805774229676e-22!GO:0005681;spliceosome;1.28470159245498e-21!GO:0008134;transcription factor binding;5.4777349129898e-21!GO:0044429;mitochondrial part;2.20122560258823e-20!GO:0042981;regulation of apoptosis;6.61294675608591e-20!GO:0000166;nucleotide binding;8.61223821520136e-20!GO:0043067;regulation of programmed cell death;1.62601602105673e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.42734442759399e-18!GO:0022607;cellular component assembly;1.68120840946173e-18!GO:0044451;nucleoplasm part;2.15751059772017e-18!GO:0016192;vesicle-mediated transport;3.12963144024059e-18!GO:0016070;RNA metabolic process;3.98664623505974e-18!GO:0048770;pigment granule;6.19933136923e-18!GO:0042470;melanosome;6.19933136923e-18!GO:0006119;oxidative phosphorylation;2.15006354288325e-17!GO:0044265;cellular macromolecule catabolic process;3.32178474623462e-17!GO:0043412;biopolymer modification;5.5121807922261e-17!GO:0003676;nucleic acid binding;6.23091296729591e-17!GO:0007243;protein kinase cascade;1.0585991728053e-16!GO:0006512;ubiquitin cycle;1.57269937699927e-16!GO:0048523;negative regulation of cellular process;3.00463330270425e-16!GO:0005740;mitochondrial envelope;3.82496677754584e-16!GO:0022618;protein-RNA complex assembly;4.26096130920876e-16!GO:0006464;protein modification process;7.26325440684405e-16!GO:0050794;regulation of cellular process;7.29623794351057e-16!GO:0031966;mitochondrial membrane;1.2742654764682e-15!GO:0043687;post-translational protein modification;1.88845451311802e-15!GO:0005773;vacuole;2.20112371506176e-15!GO:0043285;biopolymer catabolic process;2.3591171520038e-15!GO:0007242;intracellular signaling cascade;3.24989057503308e-15!GO:0017111;nucleoside-triphosphatase activity;3.54349102043815e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.95264764951899e-15!GO:0016462;pyrophosphatase activity;4.01236034283095e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;4.84075637745418e-15!GO:0006996;organelle organization and biogenesis;5.26233451375749e-15!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.68016599490573e-15!GO:0019866;organelle inner membrane;7.71469689603077e-15!GO:0006605;protein targeting;8.73023578238956e-15!GO:0048519;negative regulation of biological process;1.10302258051277e-14!GO:0019941;modification-dependent protein catabolic process;1.48279551202527e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.48279551202527e-14!GO:0016604;nuclear body;1.66374534639388e-14!GO:0032553;ribonucleotide binding;1.87837074602409e-14!GO:0032555;purine ribonucleotide binding;1.87837074602409e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.87837074602409e-14!GO:0044257;cellular protein catabolic process;1.90398718930916e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.04682729815801e-14!GO:0009057;macromolecule catabolic process;3.1229520186161e-14!GO:0016874;ligase activity;5.61390779962577e-14!GO:0017076;purine nucleotide binding;6.69496420019408e-14!GO:0006913;nucleocytoplasmic transport;8.13103838340125e-14!GO:0000323;lytic vacuole;1.0482076167534e-13!GO:0005764;lysosome;1.0482076167534e-13!GO:0051169;nuclear transport;1.65087861436062e-13!GO:0043069;negative regulation of programmed cell death;1.97824996637836e-13!GO:0043066;negative regulation of apoptosis;2.02709785449458e-13!GO:0003712;transcription cofactor activity;3.07115216079633e-13!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.24447054962661e-13!GO:0050789;regulation of biological process;5.70346928086508e-13!GO:0015934;large ribosomal subunit;5.7682716142347e-13!GO:0016607;nuclear speck;6.93189869114937e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.974287335331e-13!GO:0008135;translation factor activity, nucleic acid binding;8.99767435019767e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.0076742907186e-12!GO:0044248;cellular catabolic process;1.13319171910873e-12!GO:0030163;protein catabolic process;1.26007340536654e-12!GO:0012505;endomembrane system;1.27141407396714e-12!GO:0005794;Golgi apparatus;2.47628495284416e-12!GO:0006793;phosphorus metabolic process;2.5468318865918e-12!GO:0006796;phosphate metabolic process;2.5468318865918e-12!GO:0065009;regulation of a molecular function;2.86835911893189e-12!GO:0005768;endosome;3.12916071798658e-12!GO:0005743;mitochondrial inner membrane;3.3695471973509e-12!GO:0015935;small ribosomal subunit;3.78046845242486e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.02297402774725e-12!GO:0051246;regulation of protein metabolic process;5.3983094230831e-12!GO:0006366;transcription from RNA polymerase II promoter;7.37991933817642e-12!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.78886499542023e-12!GO:0065007;biological regulation;1.0012073690687e-11!GO:0003743;translation initiation factor activity;1.11295394353632e-11!GO:0006457;protein folding;1.36675036711341e-11!GO:0006413;translational initiation;2.02502107126763e-11!GO:0044455;mitochondrial membrane part;2.21100756146904e-11!GO:0002376;immune system process;5.14560717462148e-11!GO:0006916;anti-apoptosis;6.57707575070663e-11!GO:0006446;regulation of translational initiation;8.48349953914639e-11!GO:0016310;phosphorylation;8.71778152101312e-11!GO:0006259;DNA metabolic process;8.72599778823609e-11!GO:0051186;cofactor metabolic process;1.32269372533193e-10!GO:0006950;response to stress;1.96221468273449e-10!GO:0051082;unfolded protein binding;3.63846042730784e-10!GO:0005730;nucleolus;4.55586885319821e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.23220720969628e-10!GO:0006732;coenzyme metabolic process;6.61058564860753e-10!GO:0005524;ATP binding;7.06538270172244e-10!GO:0048193;Golgi vesicle transport;7.29328344981691e-10!GO:0032559;adenyl ribonucleotide binding;8.19549875958928e-10!GO:0005635;nuclear envelope;1.48411562451394e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.48411562451394e-09!GO:0000375;RNA splicing, via transesterification reactions;1.48411562451394e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.48411562451394e-09!GO:0031324;negative regulation of cellular metabolic process;1.72883903457052e-09!GO:0048522;positive regulation of cellular process;1.76147077301264e-09!GO:0019222;regulation of metabolic process;1.92179783957084e-09!GO:0005770;late endosome;2.06225520973229e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.25602777342302e-09!GO:0005746;mitochondrial respiratory chain;2.41184662835576e-09!GO:0019829;cation-transporting ATPase activity;2.67655150236895e-09!GO:0008639;small protein conjugating enzyme activity;2.71322734921049e-09!GO:0030554;adenyl nucleotide binding;2.72187121338181e-09!GO:0005783;endoplasmic reticulum;3.30535986996905e-09!GO:0015986;ATP synthesis coupled proton transport;3.31163921210515e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.31163921210515e-09!GO:0016787;hydrolase activity;3.31163921210515e-09!GO:0019787;small conjugating protein ligase activity;3.94649390804597e-09!GO:0017038;protein import;4.66581766706604e-09!GO:0004842;ubiquitin-protein ligase activity;5.76256293386926e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.1310535563693e-09!GO:0009967;positive regulation of signal transduction;6.39571357785221e-09!GO:0048518;positive regulation of biological process;6.64370152832318e-09!GO:0050790;regulation of catalytic activity;9.69363585886463e-09!GO:0050136;NADH dehydrogenase (quinone) activity;1.27963592497504e-08!GO:0003954;NADH dehydrogenase activity;1.27963592497504e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.27963592497504e-08!GO:0009056;catabolic process;1.35229421176759e-08!GO:0016564;transcription repressor activity;1.3825558037466e-08!GO:0051170;nuclear import;1.62293702781174e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.84730545935618e-08!GO:0006955;immune response;2.05653687435065e-08!GO:0006164;purine nucleotide biosynthetic process;2.18684452313007e-08!GO:0007049;cell cycle;2.29750024145763e-08!GO:0016881;acid-amino acid ligase activity;2.49858000006386e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.57083442162744e-08!GO:0009150;purine ribonucleotide metabolic process;2.57083442162744e-08!GO:0006163;purine nucleotide metabolic process;2.70193134694273e-08!GO:0005774;vacuolar membrane;2.75776236484805e-08!GO:0031965;nuclear membrane;3.17458961179688e-08!GO:0006417;regulation of translation;3.17458961179688e-08!GO:0003713;transcription coactivator activity;3.22881477334347e-08!GO:0043228;non-membrane-bound organelle;3.73148842774269e-08!GO:0043232;intracellular non-membrane-bound organelle;3.73148842774269e-08!GO:0006606;protein import into nucleus;4.00363184379698e-08!GO:0009892;negative regulation of metabolic process;4.17706059137555e-08!GO:0006754;ATP biosynthetic process;4.3029630250958e-08!GO:0006753;nucleoside phosphate metabolic process;4.3029630250958e-08!GO:0044453;nuclear membrane part;5.28288036250008e-08!GO:0043065;positive regulation of apoptosis;5.4696277962985e-08!GO:0008565;protein transporter activity;5.50350139972446e-08!GO:0008047;enzyme activator activity;5.66402725952229e-08!GO:0016887;ATPase activity;6.74001022078468e-08!GO:0019899;enzyme binding;7.77062682843786e-08!GO:0016469;proton-transporting two-sector ATPase complex;8.00171224486607e-08!GO:0043068;positive regulation of programmed cell death;8.00171224486607e-08!GO:0042775;organelle ATP synthesis coupled electron transport;8.20846231657273e-08!GO:0042773;ATP synthesis coupled electron transport;8.20846231657273e-08!GO:0044440;endosomal part;8.28012425612029e-08!GO:0010008;endosome membrane;8.28012425612029e-08!GO:0016481;negative regulation of transcription;1.0239742895291e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.09911633585601e-07!GO:0006461;protein complex assembly;1.09911633585601e-07!GO:0009259;ribonucleotide metabolic process;1.1196622732197e-07!GO:0042623;ATPase activity, coupled;1.138626451197e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.17620003592797e-07!GO:0009615;response to virus;1.20439568227984e-07!GO:0007264;small GTPase mediated signal transduction;1.24634360001155e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.40508516283079e-07!GO:0009055;electron carrier activity;1.44342296315771e-07!GO:0044437;vacuolar part;1.48639601420873e-07!GO:0005525;GTP binding;1.55944058350662e-07!GO:0009108;coenzyme biosynthetic process;1.55944058350662e-07!GO:0009260;ribonucleotide biosynthetic process;1.70720539048785e-07!GO:0051726;regulation of cell cycle;1.87354885324261e-07!GO:0030964;NADH dehydrogenase complex (quinone);1.89892980578468e-07!GO:0045271;respiratory chain complex I;1.89892980578468e-07!GO:0005747;mitochondrial respiratory chain complex I;1.89892980578468e-07!GO:0003924;GTPase activity;1.90343692902099e-07!GO:0005765;lysosomal membrane;1.91099011621119e-07!GO:0051188;cofactor biosynthetic process;1.92690912579358e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.13754439339723e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.13754439339723e-07!GO:0005793;ER-Golgi intermediate compartment;2.3354583283306e-07!GO:0000074;regulation of progression through cell cycle;2.74717225393611e-07!GO:0031982;vesicle;2.81976257351888e-07!GO:0031323;regulation of cellular metabolic process;3.30515606023954e-07!GO:0046034;ATP metabolic process;3.37837757874895e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.48628161445855e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.48628161445855e-07!GO:0009889;regulation of biosynthetic process;3.67746223218085e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.77873066404039e-07!GO:0045786;negative regulation of progression through cell cycle;4.37785874374395e-07!GO:0044432;endoplasmic reticulum part;4.42833692595891e-07!GO:0050657;nucleic acid transport;4.45010777071156e-07!GO:0051236;establishment of RNA localization;4.45010777071156e-07!GO:0050658;RNA transport;4.45010777071156e-07!GO:0031326;regulation of cellular biosynthetic process;5.24007766790232e-07!GO:0048468;cell development;5.84704601078257e-07!GO:0006403;RNA localization;6.12692770368598e-07!GO:0009966;regulation of signal transduction;7.01071732737493e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.67287732499932e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.67287732499932e-07!GO:0032446;protein modification by small protein conjugation;8.10431996693296e-07!GO:0016568;chromatin modification;8.71245616245445e-07!GO:0006917;induction of apoptosis;9.11219838615852e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.14296800793265e-06!GO:0006752;group transfer coenzyme metabolic process;1.4110150501675e-06!GO:0012502;induction of programmed cell death;1.48390949951303e-06!GO:0016563;transcription activator activity;1.67212048816345e-06!GO:0016567;protein ubiquitination;1.87983905162633e-06!GO:0031980;mitochondrial lumen;2.06228122003138e-06!GO:0005759;mitochondrial matrix;2.06228122003138e-06!GO:0031410;cytoplasmic vesicle;2.20667715074351e-06!GO:0005643;nuclear pore;2.25684556902522e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;2.29179093174842e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.49335770061408e-06!GO:0009141;nucleoside triphosphate metabolic process;2.72926364283094e-06!GO:0016044;membrane organization and biogenesis;2.99184091923485e-06!GO:0032561;guanyl ribonucleotide binding;3.36644168622063e-06!GO:0019001;guanyl nucleotide binding;3.36644168622063e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.7826517072495e-06!GO:0016197;endosome transport;4.32509077788034e-06!GO:0009607;response to biotic stimulus;4.34986483370277e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.70105421016299e-06!GO:0008026;ATP-dependent helicase activity;4.82440279675665e-06!GO:0003714;transcription corepressor activity;4.87280948493289e-06!GO:0031988;membrane-bound vesicle;4.87616204419499e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.98312171379634e-06!GO:0006323;DNA packaging;6.39734198910603e-06!GO:0051028;mRNA transport;7.0718452388611e-06!GO:0004386;helicase activity;7.08350944938383e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.83212434973337e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.97496556434839e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.42326509607467e-06!GO:0010468;regulation of gene expression;8.82434254858933e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.03592898456178e-06!GO:0005789;endoplasmic reticulum membrane;9.20055792075767e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.20095199927967e-05!GO:0015399;primary active transmembrane transporter activity;1.20095199927967e-05!GO:0030695;GTPase regulator activity;1.27765480363268e-05!GO:0031252;leading edge;1.34447601571392e-05!GO:0005096;GTPase activator activity;1.35920126679157e-05!GO:0048475;coated membrane;1.40546691588426e-05!GO:0030117;membrane coat;1.40546691588426e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.40560298838957e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.92522914013253e-05!GO:0031902;late endosome membrane;1.92765001090305e-05!GO:0003724;RNA helicase activity;1.97122769785045e-05!GO:0046930;pore complex;2.28334955921645e-05!GO:0051168;nuclear export;2.52903205157525e-05!GO:0006974;response to DNA damage stimulus;3.12284515224661e-05!GO:0022402;cell cycle process;3.1269985227824e-05!GO:0005769;early endosome;3.43994161727894e-05!GO:0030120;vesicle coat;3.8092085866176e-05!GO:0030662;coated vesicle membrane;3.8092085866176e-05!GO:0006350;transcription;4.705559570335e-05!GO:0045259;proton-transporting ATP synthase complex;5.02823990657223e-05!GO:0004298;threonine endopeptidase activity;5.0302547520795e-05!GO:0065002;intracellular protein transport across a membrane;5.76973452012932e-05!GO:0006613;cotranslational protein targeting to membrane;6.04024047319697e-05!GO:0006401;RNA catabolic process;6.36843284090925e-05!GO:0051336;regulation of hydrolase activity;6.5334522847941e-05!GO:0051427;hormone receptor binding;7.4582856148599e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.4582856148599e-05!GO:0045892;negative regulation of transcription, DNA-dependent;7.64009053509668e-05!GO:0008632;apoptotic program;7.85806383502138e-05!GO:0043566;structure-specific DNA binding;8.00812968893186e-05!GO:0032940;secretion by cell;8.89005519847791e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.20129387760822e-05!GO:0006897;endocytosis;9.71758921437569e-05!GO:0010324;membrane invagination;9.71758921437569e-05!GO:0042254;ribosome biogenesis and assembly;0.000101463103187566!GO:0030532;small nuclear ribonucleoprotein complex;0.00010545383246485!GO:0003697;single-stranded DNA binding;0.000117284094384543!GO:0051276;chromosome organization and biogenesis;0.000118698584883043!GO:0051789;response to protein stimulus;0.000130686106087084!GO:0006986;response to unfolded protein;0.000130686106087084!GO:0035257;nuclear hormone receptor binding;0.000130706127647935!GO:0046519;sphingoid metabolic process;0.00013537279530265!GO:0004674;protein serine/threonine kinase activity;0.000141904806598995!GO:0006818;hydrogen transport;0.000141959724334133!GO:0009060;aerobic respiration;0.00014842629072516!GO:0046822;regulation of nucleocytoplasmic transport;0.000152913735746645!GO:0044431;Golgi apparatus part;0.000161158351795813!GO:0005057;receptor signaling protein activity;0.000162294053989864!GO:0001816;cytokine production;0.000168153838900702!GO:0006281;DNA repair;0.000169519757557232!GO:0000245;spliceosome assembly;0.000172562514248206!GO:0043492;ATPase activity, coupled to movement of substances;0.000172562514248206!GO:0009893;positive regulation of metabolic process;0.000173668663668515!GO:0007033;vacuole organization and biogenesis;0.000180137235580228!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000183091292241061!GO:0007040;lysosome organization and biogenesis;0.000191793743902926!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000194779631566518!GO:0007265;Ras protein signal transduction;0.000200342158451262!GO:0005083;small GTPase regulator activity;0.00020293863385161!GO:0005885;Arp2/3 protein complex;0.000236260118133299!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000237763853803382!GO:0015992;proton transport;0.000239785540616259!GO:0007034;vacuolar transport;0.000258732963020438!GO:0006672;ceramide metabolic process;0.000259991613673106!GO:0051338;regulation of transferase activity;0.000260645644604806!GO:0030036;actin cytoskeleton organization and biogenesis;0.000261299248276736!GO:0008234;cysteine-type peptidase activity;0.000278216620733936!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000285251228746693!GO:0007050;cell cycle arrest;0.000303363243628792!GO:0008186;RNA-dependent ATPase activity;0.000303363243628792!GO:0016740;transferase activity;0.000325997974211931!GO:0002757;immune response-activating signal transduction;0.00032908929527585!GO:0030099;myeloid cell differentiation;0.000344772962123343!GO:0045333;cellular respiration;0.000348981741336359!GO:0005761;mitochondrial ribosome;0.000374109336943516!GO:0000313;organellar ribosome;0.000374109336943516!GO:0000151;ubiquitin ligase complex;0.000378644598167884!GO:0006402;mRNA catabolic process;0.000407163646879765!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000435747585753242!GO:0022890;inorganic cation transmembrane transporter activity;0.000445715632201283!GO:0051223;regulation of protein transport;0.000469488583026918!GO:0005798;Golgi-associated vesicle;0.000517509641703651!GO:0045321;leukocyte activation;0.000518312800440243!GO:0043085;positive regulation of catalytic activity;0.000577154035276749!GO:0007041;lysosomal transport;0.000591287155276096!GO:0001726;ruffle;0.000599046751940422!GO:0009117;nucleotide metabolic process;0.000643869264188868!GO:0043549;regulation of kinase activity;0.000667952067336568!GO:0007005;mitochondrion organization and biogenesis;0.000718418125414694!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000728579598436134!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000766637748623353!GO:0004812;aminoacyl-tRNA ligase activity;0.000766637748623353!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000766637748623353!GO:0006399;tRNA metabolic process;0.000798345910866949!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000801154107980648!GO:0003729;mRNA binding;0.000822185874211053!GO:0002764;immune response-regulating signal transduction;0.000822185874211053!GO:0004004;ATP-dependent RNA helicase activity;0.000909690876853855!GO:0006612;protein targeting to membrane;0.000918548549482452!GO:0060090;molecular adaptor activity;0.000924683487412866!GO:0005637;nuclear inner membrane;0.000939379990760525!GO:0045859;regulation of protein kinase activity;0.000958378824717158!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000962424303066713!GO:0033157;regulation of intracellular protein transport;0.000977209302442821!GO:0042306;regulation of protein import into nucleus;0.000977209302442821!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000985173070988064!GO:0031072;heat shock protein binding;0.000994641596977708!GO:0033116;ER-Golgi intermediate compartment membrane;0.00100679214405756!GO:0051090;regulation of transcription factor activity;0.00101476434434801!GO:0045941;positive regulation of transcription;0.00103357398184309!GO:0030149;sphingolipid catabolic process;0.00115962554849526!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00117312953996731!GO:0008654;phospholipid biosynthetic process;0.00117396664239132!GO:0005741;mitochondrial outer membrane;0.00119107934624041!GO:0005667;transcription factor complex;0.00126158882622798!GO:0043038;amino acid activation;0.0012661904385682!GO:0006418;tRNA aminoacylation for protein translation;0.0012661904385682!GO:0043039;tRNA aminoacylation;0.0012661904385682!GO:0006643;membrane lipid metabolic process;0.00135664082093778!GO:0043623;cellular protein complex assembly;0.00141140966294688!GO:0005099;Ras GTPase activator activity;0.00162328699809409!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00166584083609614!GO:0006954;inflammatory response;0.00171183794683325!GO:0046983;protein dimerization activity;0.00171397858442488!GO:0045449;regulation of transcription;0.00177115346918466!GO:0022415;viral reproductive process;0.00177272707211743!GO:0018193;peptidyl-amino acid modification;0.00181609895030871!GO:0009719;response to endogenous stimulus;0.00181912926151664!GO:0006919;caspase activation;0.00187963705760965!GO:0031325;positive regulation of cellular metabolic process;0.00189170992559462!GO:0016251;general RNA polymerase II transcription factor activity;0.00189170992559462!GO:0043087;regulation of GTPase activity;0.00190972505961663!GO:0045893;positive regulation of transcription, DNA-dependent;0.00191459664927761!GO:0030097;hemopoiesis;0.00199256818252047!GO:0002274;myeloid leukocyte activation;0.00205973455004765!GO:0006351;transcription, DNA-dependent;0.00210442810186025!GO:0045454;cell redox homeostasis;0.0021564046557244!GO:0032774;RNA biosynthetic process;0.00228411922103941!GO:0044262;cellular carbohydrate metabolic process;0.00228516794407269!GO:0016363;nuclear matrix;0.00240537074274342!GO:0016301;kinase activity;0.00261016505821155!GO:0065004;protein-DNA complex assembly;0.00265267961797905!GO:0043281;regulation of caspase activity;0.00267645603028018!GO:0042990;regulation of transcription factor import into nucleus;0.00276691895027!GO:0042991;transcription factor import into nucleus;0.00276691895027!GO:0031901;early endosome membrane;0.00276691895027!GO:0048487;beta-tubulin binding;0.00276691895027!GO:0019867;outer membrane;0.00276951992667598!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0027746314983231!GO:0030029;actin filament-based process;0.00283278697471068!GO:0045045;secretory pathway;0.00286948163174486!GO:0006091;generation of precursor metabolites and energy;0.00338042891266901!GO:0019904;protein domain specific binding;0.00341343499373903!GO:0001817;regulation of cytokine production;0.00355771096228206!GO:0045637;regulation of myeloid cell differentiation;0.0036079855907053!GO:0043280;positive regulation of caspase activity;0.00361540329310659!GO:0009165;nucleotide biosynthetic process;0.0036285904035593!GO:0031968;organelle outer membrane;0.00365604875593648!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.0037605453523716!GO:0016072;rRNA metabolic process;0.00380089612457736!GO:0006099;tricarboxylic acid cycle;0.00419936590357705!GO:0046356;acetyl-CoA catabolic process;0.00419936590357705!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00435063468891284!GO:0043021;ribonucleoprotein binding;0.00437555148667286!GO:0000139;Golgi membrane;0.00438835891399894!GO:0046966;thyroid hormone receptor binding;0.00443570173682!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00450761729484126!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00450761729484126!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00450761729484126!GO:0006665;sphingolipid metabolic process;0.00463174452106736!GO:0006468;protein amino acid phosphorylation;0.00471815905103384!GO:0051187;cofactor catabolic process;0.00477759863476598!GO:0016779;nucleotidyltransferase activity;0.00477759863476598!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00478964804924112!GO:0006891;intra-Golgi vesicle-mediated transport;0.00478964804924112!GO:0006364;rRNA processing;0.00499720961072242!GO:0006607;NLS-bearing substrate import into nucleus;0.00527421881943421!GO:0019377;glycolipid catabolic process;0.00540001651607097!GO:0051707;response to other organism;0.00563652502748139!GO:0005484;SNAP receptor activity;0.00570887835343499!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00627804707690533!GO:0030521;androgen receptor signaling pathway;0.00631124427135628!GO:0050851;antigen receptor-mediated signaling pathway;0.00631124427135628!GO:0006352;transcription initiation;0.00635319674602911!GO:0003702;RNA polymerase II transcription factor activity;0.00652607045548466!GO:0001775;cell activation;0.00652739108375239!GO:0046649;lymphocyte activation;0.00677269502514422!GO:0004197;cysteine-type endopeptidase activity;0.00703400941393144!GO:0046479;glycosphingolipid catabolic process;0.00740300733712513!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00751908567600585!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00757134292925168!GO:0042802;identical protein binding;0.00798733182638753!GO:0004185;serine carboxypeptidase activity;0.00798971967916858!GO:0045920;negative regulation of exocytosis;0.0081013338931891!GO:0043301;negative regulation of leukocyte degranulation;0.0081013338931891!GO:0043305;negative regulation of mast cell degranulation;0.0081013338931891!GO:0005070;SH3/SH2 adaptor activity;0.00821545752971843!GO:0006611;protein export from nucleus;0.00830565130365331!GO:0001819;positive regulation of cytokine production;0.00838212503576403!GO:0006333;chromatin assembly or disassembly;0.00839127017660369!GO:0008270;zinc ion binding;0.00851756798111455!GO:0030134;ER to Golgi transport vesicle;0.00865143787941435!GO:0005813;centrosome;0.00894399751550441!GO:0032386;regulation of intracellular transport;0.00906125042450006!GO:0006084;acetyl-CoA metabolic process;0.00918307733658949!GO:0006749;glutathione metabolic process;0.00954851621828245!GO:0016791;phosphoric monoester hydrolase activity;0.00963696523796168!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.00991677221633689!GO:0002819;regulation of adaptive immune response;0.00991677221633689!GO:0048500;signal recognition particle;0.01004730771458!GO:0042110;T cell activation;0.01004730771458!GO:0030518;steroid hormone receptor signaling pathway;0.01004730771458!GO:0043433;negative regulation of transcription factor activity;0.0102625269439033!GO:0002252;immune effector process;0.0103691030310298!GO:0031625;ubiquitin protein ligase binding;0.0104282435264732!GO:0002444;myeloid leukocyte mediated immunity;0.0108484801083052!GO:0008383;manganese superoxide dismutase activity;0.0108951102827844!GO:0001315;age-dependent response to reactive oxygen species;0.0108951102827844!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0116605681035191!GO:0030127;COPII vesicle coat;0.0117672990184804!GO:0012507;ER to Golgi transport vesicle membrane;0.0117672990184804!GO:0051092;activation of NF-kappaB transcription factor;0.011894217188729!GO:0000082;G1/S transition of mitotic cell cycle;0.0120053386563883!GO:0006405;RNA export from nucleus;0.0127145855611685!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0127145855611685!GO:0009109;coenzyme catabolic process;0.0127512598687987!GO:0006952;defense response;0.0131052487208794!GO:0030027;lamellipodium;0.0134442623925021!GO:0030100;regulation of endocytosis;0.0134442623925021!GO:0033367;protein localization in mast cell secretory granule;0.0134442623925021!GO:0033365;protein localization in organelle;0.0134442623925021!GO:0033371;T cell secretory granule organization and biogenesis;0.0134442623925021!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0134442623925021!GO:0033375;protease localization in T cell secretory granule;0.0134442623925021!GO:0042629;mast cell granule;0.0134442623925021!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0134442623925021!GO:0033364;mast cell secretory granule organization and biogenesis;0.0134442623925021!GO:0033380;granzyme B localization in T cell secretory granule;0.0134442623925021!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0134442623925021!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0134442623925021!GO:0033368;protease localization in mast cell secretory granule;0.0134442623925021!GO:0033366;protein localization in secretory granule;0.0134442623925021!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0134442623925021!GO:0033374;protein localization in T cell secretory granule;0.0134442623925021!GO:0030218;erythrocyte differentiation;0.0136897511360421!GO:0002440;production of molecular mediator of immune response;0.0139341063529498!GO:0030176;integral to endoplasmic reticulum membrane;0.0139763020857379!GO:0002520;immune system development;0.014111947237264!GO:0030503;regulation of cell redox homeostasis;0.014111947237264!GO:0005048;signal sequence binding;0.0141133892221954!GO:0006458;'de novo' protein folding;0.0141225590463445!GO:0051084;'de novo' posttranslational protein folding;0.0141225590463445!GO:0045576;mast cell activation;0.0143751909744645!GO:0030041;actin filament polymerization;0.0144538171940067!GO:0002521;leukocyte differentiation;0.0145051366890338!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0147238392724192!GO:0045047;protein targeting to ER;0.0147238392724192!GO:0007259;JAK-STAT cascade;0.0150851640992099!GO:0051252;regulation of RNA metabolic process;0.0150977089748525!GO:0015036;disulfide oxidoreductase activity;0.0151388255559984!GO:0032318;regulation of Ras GTPase activity;0.0153190026179493!GO:0017166;vinculin binding;0.0153867236627481!GO:0003690;double-stranded DNA binding;0.0156812893241596!GO:0019220;regulation of phosphate metabolic process;0.0158666059619614!GO:0051174;regulation of phosphorus metabolic process;0.0158666059619614!GO:0008139;nuclear localization sequence binding;0.0159366367438397!GO:0046467;membrane lipid biosynthetic process;0.0161852943741998!GO:0035035;histone acetyltransferase binding;0.0166911933136734!GO:0000287;magnesium ion binding;0.0167954998712197!GO:0006355;regulation of transcription, DNA-dependent;0.0170402883554121!GO:0046914;transition metal ion binding;0.0170977099052434!GO:0048471;perinuclear region of cytoplasm;0.0173389668738319!GO:0042613;MHC class II protein complex;0.0176256043703521!GO:0030663;COPI coated vesicle membrane;0.0177780886822618!GO:0030126;COPI vesicle coat;0.0177780886822618!GO:0051098;regulation of binding;0.0179385515469712!GO:0000209;protein polyubiquitination;0.0179497917495869!GO:0030867;rough endoplasmic reticulum membrane;0.0180506757161117!GO:0051049;regulation of transport;0.0180506757161117!GO:0030658;transport vesicle membrane;0.018170950913397!GO:0016311;dephosphorylation;0.0182140562695392!GO:0046466;membrane lipid catabolic process;0.0182181548172038!GO:0004177;aminopeptidase activity;0.0182181548172038!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.019107668018179!GO:0050811;GABA receptor binding;0.0194675954260655!GO:0043621;protein self-association;0.0195396079893178!GO:0048534;hemopoietic or lymphoid organ development;0.0197071648356017!GO:0030118;clathrin coat;0.0200815318025096!GO:0032763;regulation of mast cell cytokine production;0.0200815318025096!GO:0032762;mast cell cytokine production;0.0200815318025096!GO:0005815;microtubule organizing center;0.020569924075588!GO:0000339;RNA cap binding;0.0206059694212716!GO:0043022;ribosome binding;0.0206059694212716!GO:0043299;leukocyte degranulation;0.0207417318054423!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0209908158527315!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0209908158527315!GO:0030133;transport vesicle;0.0213773638430916!GO:0019882;antigen processing and presentation;0.0214452134814369!GO:0043300;regulation of leukocyte degranulation;0.0217628823302222!GO:0019079;viral genome replication;0.0219276558378839!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0219276558378839!GO:0051345;positive regulation of hydrolase activity;0.0224972387564818!GO:0015631;tubulin binding;0.0226662005827344!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0230201748057443!GO:0002443;leukocyte mediated immunity;0.0230201748057443!GO:0006689;ganglioside catabolic process;0.0236146045082128!GO:0030137;COPI-coated vesicle;0.0238815455552529!GO:0003725;double-stranded RNA binding;0.0248962215297839!GO:0051101;regulation of DNA binding;0.0250310587960744!GO:0019843;rRNA binding;0.0251011648355066!GO:0051091;positive regulation of transcription factor activity;0.0252797757967984!GO:0008312;7S RNA binding;0.0253499919792279!GO:0019318;hexose metabolic process;0.0255912745083172!GO:0008361;regulation of cell size;0.026211057792837!GO:0033673;negative regulation of kinase activity;0.0262950067138238!GO:0006469;negative regulation of protein kinase activity;0.0262950067138238!GO:0005694;chromosome;0.0263670387229848!GO:0050900;leukocyte migration;0.0263889016690078!GO:0051050;positive regulation of transport;0.0264679616202955!GO:0006516;glycoprotein catabolic process;0.0269612700558439!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0272204818811154!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0272204818811154!GO:0048146;positive regulation of fibroblast proliferation;0.0275399834344042!GO:0008637;apoptotic mitochondrial changes;0.0276118023126951!GO:0002824;positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0276118023126951!GO:0002821;positive regulation of adaptive immune response;0.0276118023126951!GO:0051059;NF-kappaB binding;0.0276118023126951!GO:0002718;regulation of cytokine production during immune response;0.0276118023126951!GO:0002367;cytokine production during immune response;0.0276118023126951!GO:0002700;regulation of production of molecular mediator of immune response;0.0276118023126951!GO:0043488;regulation of mRNA stability;0.0289705252758302!GO:0043487;regulation of RNA stability;0.0289705252758302!GO:0006650;glycerophospholipid metabolic process;0.0290818834880982!GO:0045792;negative regulation of cell size;0.0293123823846868!GO:0035258;steroid hormone receptor binding;0.0294689815283267!GO:0008624;induction of apoptosis by extracellular signals;0.029757608047113!GO:0000785;chromatin;0.0297952314028808!GO:0051348;negative regulation of transferase activity;0.0298694290505621!GO:0002224;toll-like receptor signaling pathway;0.0299365808913199!GO:0002221;pattern recognition receptor signaling pathway;0.0299365808913199!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0300282618790748!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0308861828197441!GO:0008286;insulin receptor signaling pathway;0.0314219287262649!GO:0000278;mitotic cell cycle;0.0315331729558302!GO:0000049;tRNA binding;0.0322598014230025!GO:0005996;monosaccharide metabolic process;0.0324734242242464!GO:0006914;autophagy;0.0327184894186625!GO:0009611;response to wounding;0.032836461867454!GO:0002467;germinal center formation;0.0329276986893453!GO:0002250;adaptive immune response;0.033045157449134!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.033045157449134!GO:0051056;regulation of small GTPase mediated signal transduction;0.0331804891242431!GO:0048144;fibroblast proliferation;0.0335504994458917!GO:0048145;regulation of fibroblast proliferation;0.0335504994458917!GO:0042348;NF-kappaB import into nucleus;0.0335504994458917!GO:0042345;regulation of NF-kappaB import into nucleus;0.0335504994458917!GO:0030433;ER-associated protein catabolic process;0.0339121265242042!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0339121265242042!GO:0030984;kininogen binding;0.0340256023513942!GO:0004213;cathepsin B activity;0.0340256023513942!GO:0006007;glucose catabolic process;0.035291837732578!GO:0050681;androgen receptor binding;0.0358114498412681!GO:0051347;positive regulation of transferase activity;0.0364035617042132!GO:0006984;ER-nuclear signaling pathway;0.0369817462734246!GO:0030522;intracellular receptor-mediated signaling pathway;0.0371759025026333!GO:0032760;positive regulation of tumor necrosis factor production;0.0371759025026333!GO:0051085;chaperone cofactor-dependent protein folding;0.0372165947735121!GO:0000118;histone deacetylase complex;0.0372254466311127!GO:0030308;negative regulation of cell growth;0.0372685087866249!GO:0000119;mediator complex;0.0372685087866249!GO:0030660;Golgi-associated vesicle membrane;0.0373197637014442!GO:0000738;DNA catabolic process, exonucleolytic;0.0373261421256282!GO:0006354;RNA elongation;0.0376572507322397!GO:0004563;beta-N-acetylhexosaminidase activity;0.0378370640375502!GO:0002697;regulation of immune effector process;0.038024307511194!GO:0006376;mRNA splice site selection;0.0382140710919198!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0382140710919198!GO:0031327;negative regulation of cellular biosynthetic process;0.0383150858705747!GO:0000165;MAPKKK cascade;0.0383150858705747!GO:0033033;negative regulation of myeloid cell apoptosis;0.0383150858705747!GO:0001803;regulation of type III hypersensitivity;0.0383150858705747!GO:0032733;positive regulation of interleukin-10 production;0.0383150858705747!GO:0033025;regulation of mast cell apoptosis;0.0383150858705747!GO:0001805;positive regulation of type III hypersensitivity;0.0383150858705747!GO:0033023;mast cell homeostasis;0.0383150858705747!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.0383150858705747!GO:0033032;regulation of myeloid cell apoptosis;0.0383150858705747!GO:0001802;type III hypersensitivity;0.0383150858705747!GO:0033028;myeloid cell apoptosis;0.0383150858705747!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.0383150858705747!GO:0033026;negative regulation of mast cell apoptosis;0.0383150858705747!GO:0033024;mast cell apoptosis;0.0383150858705747!GO:0005905;coated pit;0.0387821525711136!GO:0045639;positive regulation of myeloid cell differentiation;0.0394199212769265!GO:0006644;phospholipid metabolic process;0.039874054031784!GO:0045603;positive regulation of endothelial cell differentiation;0.0402934764687563!GO:0046578;regulation of Ras protein signal transduction;0.0403004801683116!GO:0009306;protein secretion;0.0403004801683116!GO:0006465;signal peptide processing;0.0403082345155338!GO:0019058;viral infectious cycle;0.0407409577018695!GO:0008538;proteasome activator activity;0.0408765595009933!GO:0045309;protein phosphorylated amino acid binding;0.0409266019658747!GO:0017091;AU-rich element binding;0.0410206331603785!GO:0050779;RNA destabilization;0.0410206331603785!GO:0000289;poly(A) tail shortening;0.0410206331603785!GO:0030119;AP-type membrane coat adaptor complex;0.0416831451955361!GO:0008017;microtubule binding;0.0432117819183968!GO:0051920;peroxiredoxin activity;0.0432304837372659!GO:0002448;mast cell mediated immunity;0.0432304837372659!GO:0043303;mast cell degranulation;0.0432304837372659!GO:0033549;MAP kinase phosphatase activity;0.0432304837372659!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0432304837372659!GO:0042147;retrograde transport, endosome to Golgi;0.0438681268624978!GO:0015923;mannosidase activity;0.0449396031117748!GO:0002237;response to molecule of bacterial origin;0.0450906329278906!GO:0048872;homeostasis of number of cells;0.0452880895750606!GO:0045646;regulation of erythrocyte differentiation;0.0452880895750606!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0455339165033034!GO:0007006;mitochondrial membrane organization and biogenesis;0.045565517494368!GO:0005684;U2-dependent spliceosome;0.045565517494368!GO:0006414;translational elongation;0.045565517494368!GO:0004860;protein kinase inhibitor activity;0.0461116702822221!GO:0006509;membrane protein ectodomain proteolysis;0.0462510647610959!GO:0033619;membrane protein proteolysis;0.0462510647610959!GO:0043304;regulation of mast cell degranulation;0.0462814173960719!GO:0008320;protein transmembrane transporter activity;0.0462814173960719!GO:0003711;transcription elongation regulator activity;0.046540861662954!GO:0005869;dynactin complex;0.046540861662954!GO:0005669;transcription factor TFIID complex;0.046613712671159!GO:0019783;small conjugating protein-specific protease activity;0.0470338308905499!GO:0030258;lipid modification;0.0470924881704691!GO:0012506;vesicle membrane;0.0473671015009981!GO:0005788;endoplasmic reticulum lumen;0.0475172268166275!GO:0051881;regulation of mitochondrial membrane potential;0.0480950184092526!GO:0030384;phosphoinositide metabolic process;0.0482760734944699!GO:0045113;regulation of integrin biosynthetic process;0.0499523728868442!GO:0045112;integrin biosynthetic process;0.0499523728868442!GO:0043681;protein import into mitochondrion;0.0499523728868442
|sample_id=11877
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=
|top_motifs=SREBF1,2:3.35571885008;NFE2L2:3.22094872512;NFE2:3.20640941952;FOSL2:2.71213982929;PAX2:2.68677608159;BACH2:2.55979684925;NR1H4:2.55875677879;SPI1:2.52695481325;CEBPA,B_DDIT3:2.36514746424;SPIB:2.36254628951;FOS_FOS{B,L1}_JUN{B,D}:2.25463107449;HLF:2.10627350458;ATF5_CREB3:2.10599775689;FOXP3:2.02891568985;ETS1,2:2.01239328253;DMAP1_NCOR{1,2}_SMARC:1.85167205446;NFIL3:1.82132524578;NFE2L1:1.72833261118;EP300:1.70034739069;ATF4:1.68450750875;NFKB1_REL_RELA:1.63335160711;RUNX1..3:1.50357559211;ATF6:1.48013152715;NANOG{mouse}:1.44038631328;TLX2:1.34795067656;SMAD1..7,9:1.34615988766;JUN:1.31434887096;HMX1:1.23860701987;ELF1,2,4:1.22552430623;FOXN1:1.21566648707;HES1:1.21028770118;MAFB:1.11871189642;CREB1:1.10257342247;PDX1:1.06370230554;RXRA_VDR{dimer}:1.05699179284;ESR1:1.00183700182;TFCP2:0.918537622545;GLI1..3:0.914050435032;IRF1,2:0.888684576056;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.824160139563;HSF1,2:0.803377015684;ALX4:0.789250719679;ESRRA:0.769322174113;CDX1,2,4:0.716921924442;TGIF1:0.705582436986;IRF7:0.657567509177;NR6A1:0.614822654463;ATF2:0.605473507589;FOX{F1,F2,J1}:0.572264474707;NANOG:0.478596132736;STAT2,4,6:0.429746228966;PITX1..3:0.389400143058;PAX3,7:0.34428047001;FOXD3:0.33263816538;PPARG:0.30253102963;HIF1A:0.270808830769;FOXO1,3,4:0.24321826197;SPZ1:0.13654632075;ZBTB16:0.0946464977379;ALX1:0.0752256289819;PRDM1:0.0632690064913;EN1,2:0.0564161125318;TBP:0.0557409359882;FOX{D1,D2}:0.0506627201315;IKZF2:0.0452122886752;PAX4:0.0268948452767;AHR_ARNT_ARNT2:0.0265852570901;HMGA1,2:0.0205912145192;NFIX:0.019572841109;RFX2..5_RFXANK_RFXAP:0.0152490851961;BPTF:-0.0424472843737;HOX{A5,B5}:-0.0855055960416;EGR1..3:-0.086537970725;NFATC1..3:-0.0949440321113;MYB:-0.0971713864406;GATA4:-0.158080339636;OCT4_SOX2{dimer}:-0.183747807437;RREB1:-0.199672892102;FOXP1:-0.213541087968;PAX1,9:-0.217987933713;ZBTB6:-0.251729052928;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.263766889471;XBP1:-0.267848363459;TFAP4:-0.313170764142;NKX3-1:-0.335177361863;MYFfamily:-0.335299751154;SRF:-0.344415501508;HNF4A_NR2F1,2:-0.373949086535;GCM1,2:-0.40079404354;ZNF148:-0.414633072907;MZF1:-0.419842071877;PATZ1:-0.430000875753;RXR{A,B,G}:-0.487924139479;MEF2{A,B,C,D}:-0.50537839096;GZF1:-0.51503072886;ZIC1..3:-0.53000193386;TBX4,5:-0.530152122275;HBP1_HMGB_SSRP1_UBTF:-0.557562075888;REST:-0.557784509764;IKZF1:-0.618102160433;HNF1A:-0.633482464358;PRRX1,2:-0.644113033127;SOX2:-0.645310323381;NHLH1,2:-0.666202537126;STAT5{A,B}:-0.742712915119;NKX6-1,2:-0.75520719469;HOXA9_MEIS1:-0.783451931405;STAT1,3:-0.784087065957;RBPJ:-0.799855219229;AIRE:-0.81340513696;ZNF238:-0.833517806748;MTF1:-0.851117547365;FOXM1:-0.868872157357;T:-0.8737841687;POU5F1:-0.875800553427;CUX2:-0.882786814955;MYOD1:-0.933193196958;TFAP2{A,C}:-0.935787334047;GATA6:-0.945139540719;PAX6:-0.964723175767;ZFP161:-0.965349414005;MED-1{core}:-0.974386592194;UFEwm:-0.980737196325;TAL1_TCF{3,4,12}:-0.984409201161;TOPORS:-0.987749600679;EVI1:-0.990365116999;KLF4:-0.998187305019;MTE{core}:-1.00190068231;TFAP2B:-1.0026686243;SOX5:-1.0051406078;NKX2-1,4:-1.01420533059;POU2F1..3:-1.0227959468;PAX8:-1.04901670223;NKX3-2:-1.11462345576;TEF:-1.12154270629;TLX1..3_NFIC{dimer}:-1.13746668836;GTF2A1,2:-1.14698852667;VSX1,2:-1.15946610364;TP53:-1.17880825879;RORA:-1.20402631666;ZEB1:-1.21338961384;NKX2-3_NKX2-5:-1.24933158629;NKX2-2,8:-1.2503603045;EBF1:-1.25320360055;GTF2I:-1.2683624427;TEAD1:-1.28719916665;ELK1,4_GABP{A,B1}:-1.29359680788;FOXL1:-1.29481931831;POU6F1:-1.29793433568;MYBL2:-1.3291928213;ZNF423:-1.33192473334;LMO2:-1.33655503886;DBP:-1.35528951375;CRX:-1.35539536314;PAX5:-1.37123069785;RFX1:-1.37943685654;ONECUT1,2:-1.41199606994;NR5A1,2:-1.42518633201;MAZ:-1.44271468799;SP1:-1.44648704059;TFDP1:-1.45492531666;E2F1..5:-1.46408705306;SNAI1..3:-1.49063354139;XCPE1{core}:-1.50863883242;HOX{A4,D4}:-1.52985875403;HIC1:-1.55786189571;NR3C1:-1.59304400815;AR:-1.60464500317;SOX{8,9,10}:-1.62529407719;ARID5B:-1.63985668122;BREu{core}:-1.66507019443;HAND1,2:-1.68932766721;HOX{A6,A7,B6,B7}:-1.70889054073;ZNF384:-1.74773845768;YY1:-1.88492069995;GFI1B:-1.9509587121;LHX3,4:-1.95684145501;FOXA2:-2.00015633143;FOXQ1:-2.00732788382;POU1F1:-2.05674290982;ADNP_IRX_SIX_ZHX:-2.0913295382;FOX{I1,J2}:-2.11144931475;bHLH_family:-2.13462156464;SOX17:-2.22533389486;CDC5L:-2.23314691591;GFI1:-2.29654023763;NFY{A,B,C}:-2.34009009078;POU3F1..4:-2.35788524106;NRF1:-2.39893489764;PBX1:-2.45660448026;ZNF143:-2.78296775195;LEF1_TCF7_TCF7L1,2:-2.84908814738
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11877-125C5;search_select_hide=table117:FF:11877-125C5
}}
}}

Latest revision as of 18:25, 4 June 2020

Name:CD14+ monocytes - treated with Cryptococcus, donor2
Species:Human (Homo sapiens)
Library ID:CNhs13487
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexmale
age51
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD4-8
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004834
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13487 CAGE DRX008145 DRR009017
Accession ID Hg19

Library idBAMCTSS
CNhs13487 DRZ000442 DRZ001827
Accession ID Hg38

Library idBAMCTSS
CNhs13487 DRZ011792 DRZ013177
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.26
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.104
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.464
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.485
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.105
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.189
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.105
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.772
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.105
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.26
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.189
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.369
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.376
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.878
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.189
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.189
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.21
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.114
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0763
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.464
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.814
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.32
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.78
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.639
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.559
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.845
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.377
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.189
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.507
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.541
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.26
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.233
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.746
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.57
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.189
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.73
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.416
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.105
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.521
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.105
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.105
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.369
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.105
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.97
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.105
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.32
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.105
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.105
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.189
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13487

Jaspar motifP-value
MA0002.24.66306e-7
MA0003.10.286
MA0004.10.358
MA0006.10.872
MA0007.10.778
MA0009.10.286
MA0014.10.922
MA0017.10.0374
MA0018.20.0919
MA0019.10.816
MA0024.10.0017
MA0025.10.0167
MA0027.10.63
MA0028.10.132
MA0029.10.42
MA0030.10.4
MA0031.10.593
MA0035.20.327
MA0038.10.0648
MA0039.20.602
MA0040.10.387
MA0041.10.387
MA0042.10.657
MA0043.13.41601e-4
MA0046.10.0406
MA0047.20.932
MA0048.10.939
MA0050.10.00307
MA0051.10.288
MA0052.10.131
MA0055.10.772
MA0057.10.663
MA0058.10.131
MA0059.10.269
MA0060.13.56396e-11
MA0061.11.35825e-5
MA0062.20.573
MA0065.20.0081
MA0066.10.0373
MA0067.11.04806e-4
MA0068.10.116
MA0069.10.761
MA0070.10.116
MA0071.10.169
MA0072.10.965
MA0073.10.335
MA0074.10.164
MA0076.10.117
MA0077.10.156
MA0078.10.49
MA0079.20.384
MA0080.26.59839e-15
MA0081.12.59886e-4
MA0083.10.846
MA0084.10.341
MA0087.10.796
MA0088.10.548
MA0090.10.179
MA0091.10.474
MA0092.10.265
MA0093.10.355
MA0099.24.37461e-41
MA0100.10.494
MA0101.12.41423e-4
MA0102.23.63202e-6
MA0103.10.57
MA0104.20.678
MA0105.16.16294e-9
MA0106.10.975
MA0107.11.58225e-5
MA0108.20.026
MA0111.10.498
MA0112.22.92458e-5
MA0113.10.944
MA0114.10.166
MA0115.10.844
MA0116.13.14358e-4
MA0117.10.115
MA0119.10.41
MA0122.10.967
MA0124.10.294
MA0125.10.289
MA0131.10.449
MA0135.10.691
MA0136.13.23297e-14
MA0137.20.731
MA0138.20.988
MA0139.10.993
MA0140.10.268
MA0141.10.0493
MA0142.10.324
MA0143.10.458
MA0144.10.229
MA0145.10.284
MA0146.10.112
MA0147.10.726
MA0148.10.782
MA0149.10.209
MA0150.11.41617e-18
MA0152.10.529
MA0153.10.00264
MA0154.10.00129
MA0155.10.647
MA0156.14.08402e-7
MA0157.10.84
MA0159.10.00971
MA0160.10.0206
MA0162.10.983
MA0163.13.30173e-7
MA0164.10.587
MA0258.10.00271
MA0259.10.526



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13487

Novel motifP-value
10.106
100.0226
1000.686
1010.843
1020.492
1030.236
1040.574
1050.211
1065.35409e-4
1070.22
1080.928
1090.218
110.156
1100.282
1110.0696
1120.237
1130.552
1140.0206
1150.307
1160.755
1170.0725
1180.184
1190.111
120.342
1200.966
1210.315
1220.557
1230.0743
1240.607
1250.599
1260.222
1270.267
1280.0197
1290.391
130.191
1300.136
1310.569
1320.0612
1330.648
1340.498
1350.435
1360.9
1370.0148
1380.159
1390.0359
140.506
1400.15
1410.307
1420.53
1430.0155
1440.597
1450.511
1460.481
1470.35
1480.0105
1490.589
150.145
1500.48
1510.352
1520.119
1530.443
1540.474
1550.351
1560.756
1570.251
1580.044
1590.703
160.313
1600.352
1610.47
1620.325
1630.229
1640.153
1650.19
1660.447
1670.217
1680.411
1690.0079
170.184
180.0924
190.325
21
200.378
210.379
220.201
230.051
240.308
250.371
260.0603
270.965
280.379
290.367
30.12
300.632
310.718
320.986
330.44
340.428
350.181
360.177
370.0592
380.341
390.731
40.633
400.223
410.0115
420.419
430.0373
440.774
450.61
460.136
470.48
480.447
490.102
50.246
500.988
510.361
520.275
530.331
540.301
550.339
560.66
570.762
580.113
590.0993
60.621
600.0449
610.55
620.0452
630.486
640.434
650.206
660.323
670.536
680.73
690.953
70.261
700.0143
710.0337
720.265
730.117
740.0897
750.106
760.228
770.34
780.0979
790.152
80.336
800.207
810.357
820.0958
830.0582
840.374
850.00807
860.039
870.447
880.569
890.16
90.377
900.0533
910.248
920.173
930.347
940.044
950.373
960.197
970.904
980.113
990.151



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13487


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000634 (Cryptococcus treatment sample)
0011105 (human CD14-positive monocytes - treated with Cryptococcus sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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