FF:11878-125C6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005082 | |||
|accession_numbers=CAGE;DRX008142;DRR009014;DRZ000439;DRZ001824;DRZ011789;DRZ013174 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
Line 7: | Line 9: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.51!3219.03!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.69!486.05!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.60!400.85!IRF8;;chr7:115670804..115670825,-!p1@TFEC!2.53!336.94!TFEC;;chr10:64018918..64018936,+!p2@ZNF365!2.34!217.53!ZNF365;;chr3:101546827..101546847,+!p2@NFKBIZ!2.24!238.18!NFKBIZ;;chr12:54778471..54778528,-!p1@ZNF385A!2.22!163.31!ZNF385A;;chr9:102584159..102584174,+!p2@NR4A3!2.20!273.69!NR4A3;;chr14:35872453..35872485,-!p2@NFKBIA!2.18!353.73!NFKBIA;;chr2:157189180..157189290,-!p1@NR4A2!2.13!655.81!NR4A2;;chr12:72056800..72056834,+!p1@THAP2!2.13!177.51!THAP2;;chr11:47399947..47399961,-!p3@SPI1!2.12!129.74!SPI1;;chr6:106534192..106534224,+!p1@PRDM1!2.10!341.46!PRDM1;;chr19:45971246..45971265,+!p1@FOSB!2.09!2119.13!FOSB;;chr10:35484053..35484076,+!p1@CREM!2.08!284.66!CREM;;chr10:64576105..64576133,-!p1@EGR2!2.08!239.47!EGR2;;chr14:35873947..35873965,-!p1@NFKBIA!2.05!6476.79!NFKBIA;;chr9:102584262..102584276,+!p1@NR4A3!2.05!238.83!NR4A3;;chr11:47400062..47400077,-!p2@SPI1!2.04!107.80!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.02!1156.06!MAFB;;chr3:101568349..101568365,+!p1@NFKBIZ!2.01!4923.11!NFKBIZ;;chr12:52445218..52445237,+!p1@NR4A1!1.99!1154.77!NR4A1;;chr16:31885093..31885165,+!p1@ZNF267!1.97!1310.33!ZNF267;;chr2:70142232..70142251,+!p1@MXD1!1.93!444.09!MXD1;;chr11:47399996..47400014,-!p4@SPI1!1.93!83.27!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!1.91!80.04!OLIG1;;chr2:61108695..61108753,+!p1@REL!1.89!493.80!REL;;chr2:68592394..68592405,+!p2@PLEK!1.89!76.81!PLEK;;chr4:103422499..103422632,+!p1@NFKB1!1.87!1435.56!NFKB1;;chr19:54041669..54041697,+!p2@ZNF331!1.87!73.59!ZNF331;;chr8:22550982..22550999,-!p1@EGR3!1.84!184.61!EGR3;;chr19:54058073..54058088,+!p1@ZNF331!1.82!64.55!ZNF331;;chr19:36391434..36391450,-!p1@NFKBID!1.81!122.00!NFKBID;;chr2:192015701..192015743,-!p1@STAT4!1.81!85.20!STAT4;;chr11:47400032..47400043,-!p5@SPI1!1.81!63.26!SPI1;;chr10:51572408..51572454,+!p3@NCOA4!1.79!338.23!NCOA4;;chr6:106534230..106534254,+!p2@PRDM1!1.78!142.65!PRDM1;;chr12:72056749..72056767,+!p6@THAP2!1.78!65.19!THAP2;;chr9:102584128..102584144,+!p3@NR4A3!1.75!101.99!NR4A3;;chr10:31288398..31288455,-!p2@ZNF438!1.75!64.55!ZNF438;;chr22:38597987..38598021,+!p2@MAFF!1.74!311.77!MAFF;;chr20:48599506..48599526,+!p1@SNAI1!1.73!323.39!SNAI1;;chr10:31288370..31288393,-!p3@ZNF438!1.72!50.99!ZNF438;;chr1:212782094..212782109,+!p1@ATF3!1.66!1150.90!ATF3;;chr2:145277640..145277771,-!p1@ZEB2!1.66!564.15!ZEB2;;chr10:104155480..104155534,+!p2@NFKB2!1.66!278.20!NFKB2;;chr12:72056773..72056796,+!p3@THAP2!1.66!57.45!THAP2;;chr2:68615063..68615089,+!p4@PLEK!1.66!44.54!PLEK;;chr8:123793988..123794016,+!p1@ZHX2!1.65!74.88!ZHX2;;chr9:102584241..102584261,+!p4@NR4A3!1.65!66.48!NR4A3;;chr12:54778351..54778378,-!p6@ZNF385A!1.65!43.89!ZNF385A;;chrX:153305787..153305807,-!p3@MECP2!1.64!42.60!MECP2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.63!481.53!ZC3H12A;;chr6:391743..391759,+!p1@IRF4!1.63!41.96!IRF4;;chr2:145275162..145275202,-!p2@ZEB2!1.62!227.21!ZEB2;;chr4:83822199..83822239,+!p2@THAP9!1.62!47.77!THAP9;;chr10:51572339..51572376,+!p4@NCOA4!1.61!87.14!NCOA4;;chr14:35872962..35873025,-!p3@NFKBIA!1.59!92.30!NFKBIA;;chr1:25256756..25256774,-!p1@RUNX3!1.59!69.71!RUNX3;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.83!PLAGL1;;chr9:129567282..129567353,+!p1@ZBTB43!1.57!453.13!ZBTB43;;chr21:30671235..30671253,+!p1@BACH1!1.57!435.70!BACH1;;chr6:12012170..12012245,+!p1@HIVEP1!1.56!170.41!HIVEP1;;chr14:35872494..35872511,-!p5@NFKBIA!1.56!46.47!NFKBIA;;chr7:50344289..50344323,+!p1@IKZF1!1.56!35.50!IKZF1;;chrX:153305962..153305995,-!p5@MECP2!1.56!35.50!MECP2;;chr10:35484090..35484104,+!p6@CREM!1.55!34.86!CREM;;chr4:106068026..106068084,+!p1@TET2!1.52!278.20!TET2;;chr13:41593425..41593480,-!p1@ELF1!1.50!188.48!ELF1;;chr21:30671690..30671762,+!p2@BACH1!1.50!101.99!BACH1;;chr5:142782823..142782854,-!p3@NR3C1!1.50!43.25!NR3C1;;chrX:129244454..129244488,-!p1@ELF4!1.49!205.26!ELF4;;chr10:104154246..104154347,+!p3@NFKB2!1.49!178.15!NFKB2;;chr21:40177845..40177863,+!p1@ETS2!1.48!1644.69!ETS2;;chr18:77155922..77155939,+!p1@NFATC1!1.48!77.46!NFATC1;;chr2:61108808..61108821,+!p3@REL!1.48!36.79!REL;;chr2:68615031..68615055,+!p3@PLEK!1.48!29.05!PLEK;;chr19:47616992..47617011,-!p4@ZC3H4!1.47!59.38!ZC3H4;;chr6:12012249..12012266,+!p5@HIVEP1!1.47!48.41!HIVEP1;;chr4:103423079..103423112,+!p4@NFKB1!1.47!28.40!NFKB1;;chr6:15246200..15246214,+!p2@JARID2!1.46!75.52!JARID2;;chr18:3448455..3448480,+!p5@TGIF1!1.46!50.35!TGIF1;;chr14:35872926..35872951,-!p4@NFKBIA!1.45!38.08!NFKBIA;;chr13:41593392..41593403,-!p7@ELF1!1.44!26.46!ELF1;;chr8:53373491..53373506,-!p4@ST18!1.44!26.46!ST18;;chr10:3827371..3827386,-!p2@KLF6!1.43!211.72!KLF6;;chr1:161736038..161736056,+!p4@ATF6!1.43!59.38!ATF6;;chr19:50432132..50432217,+!p2@ATF5!1.43!30.98!ATF5;;chr2:191885737..191885750,-!p4@STAT1!1.41!24.53!STAT1;;chr2:97202480..97202499,+!p1@ARID5A!1.40!233.02!ARID5A;;chr10:35484804..35484902,+!p2@CREM!1.40!89.08!CREM;;chr3:150126101..150126118,+!p6@TSC22D2!1.40!39.37!TSC22D2;;chr7:106809470..106809481,+!p2@HBP1!1.40!33.57!HBP1;;chr21:30673091..30673135,+!p7@BACH1!1.40!23.88!BACH1;;chr2:28618532..28618610,+!p4@FOSL2!1.39!40.02!FOSL2;;chr1:38325227..38325246,-!p2@MTF1!1.38!30.98!MTF1;;chr9:102584278..102584285,+!p5@NR4A3!1.38!23.24!NR4A3;;chr1:157108130..157108173,-!p1@ETV3!1.37!158.14!ETV3;;chr3:12329397..12329433,+!p2@PPARG!1.37!49.70!PPARG;;chr20:48809000..48809053,+!p12@CEBPB!1.37!29.69!CEBPB;;chr2:157189617..157189667,-!p4@NR4A2!1.37!22.59!NR4A2;;chr20:48807351..48807384,+!p1@CEBPB!1.36!2155.92!CEBPB;;chr9:110252035..110252057,-!p1@KLF4!1.36!338.23!KLF4;;chr6:44233252..44233296,-!p1@NFKBIE!1.36!206.56!NFKBIE;;chr3:39195037..39195069,-!p2@CSRNP1!1.36!133.62!CSRNP1;;chr8:80679993..80680011,-!p1@HEY1!1.36!31.63!HEY1;;chr4:103446513..103446530,+!p19@NFKB1!1.36!21.95!NFKB1;;chr17:38497662..38497713,+!p4@RARA!1.35!24.53!RARA;;chr2:145271342..145271377,-!p5@ZEB2!1.35!21.30!ZEB2;;chr6:12011943..12012015,+!p2@HIVEP1!1.34!66.48!HIVEP1;;chr19:45251395..45251432,+!p8@BCL3!1.34!20.66!BCL3;;chr21:30672433..30672464,+!p6@BACH1!1.34!20.66!BACH1;;chr2:28615716..28615733,+!p1@FOSL2!1.33!920.46!FOSL2;;chr11:65430554..65430579,-!p3@RELA!1.33!51.64!RELA;;chr2:61108771..61108789,+!p4@REL!1.33!30.34!REL;;chr12:52431016..52431071,+!p4@NR4A1!1.33!23.88!NR4A1;;chr3:5020939..5020952,+!p2@BHLHE40!1.32!61.97!BHLHE40;;chr21:36260295..36260310,-!p3@RUNX1!1.32!31.63!RUNX1;;chr10:35416142..35416169,+!p3@CREM!1.31!50.35!CREM;;chr19:19496539..19496576,+!p8@GATAD2A!1.31!33.57!GATAD2A;;chr18:3449618..3449634,+!p13@TGIF1!1.31!23.88!TGIF1;;chr4:106066776..106066791,+!p9@TET2!1.31!19.36!TET2;;chr11:47400045..47400060,-!p6@SPI1!1.31!19.36!SPI1;;chr8:81397820..81397836,+!p2@ZBTB10!1.30!23.88!ZBTB10;;chr4:83821967..83821998,+!p3@THAP9!1.30!23.24!THAP9;;chr2:238600998..238601013,+!p5@LRRFIP1!1.29!18.72!LRRFIP1;;chr12:11802753..11802834,+!p2@ETV6!1.28!86.49!ETV6;;chr12:96588368..96588394,+!p3@ELK3!1.28!48.41!ELK3;;chr18:3449527..3449582,+!p6@TGIF1!1.28!34.21!TGIF1;;chr2:8822176..8822196,+!p1@ID2!1.27!2410.89!ID2;;chr21:40177892..40177903,+!p2@ETS2!1.27!69.71!ETS2;;chr3:12330560..12330579,+!p1@PPARG!1.27!20.01!PPARG;;chr19:36389729..36389751,-!p3@NFKBID!1.27!17.43!NFKBID;;chr5:88178983..88179012,-!p1@MEF2C!1.26!131.03!MEF2C;;chr14:75745523..75745537,+!p1@FOS!1.25!1971.96!FOS;;chr12:96588219..96588263,+!p2@ELK3!1.25!117.48!ELK3;;chr19:45252008..45252024,+!p2@BCL3!1.25!54.87!BCL3;;chr14:35872414..35872425,-!p7@NFKBIA!1.25!18.72!NFKBIA;;chr1:212738742..212738755,+!p2@ATF3!1.25!16.78!ATF3;;chr6:106535598..106535637,+!p7@PRDM1!1.25!16.78!PRDM1;;chr6:28048343..28048354,+!p1@ZNF165!1.25!16.78!ZNF165;;chr2:113999360..113999386,-!p4@PAX8!1.25!16.78!PAX8;;chr3:170075436..170075520,+!p1@SKIL!1.24!343.40!SKIL;;chr7:17338266..17338282,+!p1@AHR!1.23!171.05!AHR;;chr2:238600933..238600985,+!p3@LRRFIP1!1.23!84.56!LRRFIP1;;chr4:83822294..83822306,+!p8@THAP9!1.23!16.14!THAP9;;chr11:47399920..47399931,-!p7@SPI1!1.23!16.14!SPI1;;chrX:129244430..129244442,-!p5@ELF4!1.23!16.14!ELF4;;chr7:115670792..115670797,-!p2@TFEC!1.23!16.14!TFEC;;chr21:34398234..34398250,+!p1@OLIG2!1.23!16.14!OLIG2;;chr7:149470641..149470694,-!p1@ZNF467!1.22!69.07!ZNF467;;chr4:106066712..106066728,+!p8@TET2!1.22!15.49!TET2;;chr19:54041574..54041589,+!p6@ZNF331!1.22!15.49!ZNF331;;chr1:935467..935484,-!p1@HES4!1.21!66.48!HES4;;chr17:79885537..79885554,-!p2@MAFG!1.21!29.05!MAFG;;chr3:193853927..193853944,+!p1@HES1!1.20!473.14!HES1;;chr21:36421535..36421610,-!p2@RUNX1!1.20!52.28!RUNX1;;chr18:3449586..3449617,+!p8@TGIF1!1.20!23.88!TGIF1;;chr10:31288329..31288353,-!p7@ZNF438!1.20!14.85!ZNF438;;chr12:72056706..72056717,+!p10@THAP2!1.20!14.85!THAP2;;chr10:104155455..104155479,+!p1@NFKB2!1.18!203.97!NFKB2;;chr9:94186101..94186122,-!p1@NFIL3!1.18!196.23!NFIL3;;chr22:38598086..38598105,+!p1@MAFF!1.18!148.46!MAFF;;chr19:36389839..36389857,-!p4@NFKBID!1.18!14.20!NFKBID;;chr12:48298765..48298783,-!p2@VDR!1.17!29.05!VDR;;chr3:5021026..5021035,+!p5@BHLHE40!1.16!16.78!BHLHE40;;chr4:106066730..106066754,+!p6@TET2!1.16!13.56!TET2;;chrX:153305741..153305753,-!p4@MECP2!1.16!13.56!MECP2;;chr17:38497715..38497734,+!p8@RARA!1.16!13.56!RARA;;chr19:45971060..45971122,+!p3@FOSB!1.16!13.56!FOSB;;chr11:615942..615957,-!p1@IRF7!1.15!123.93!IRF7;;chr2:70314240..70314256,+!p4@PCBP1!1.15!27.11!PCBP1;;chr2:185463247..185463263,+!p1@ZNF804A!1.14!22.59!ZNF804A;;chr2:145277882..145277967,-!p3@ZEB2!1.14!21.95!ZEB2;;chr10:104155659..104155676,+!p4@NFKB2!1.14!16.14!NFKB2;;chr1:25256439..25256476,-!p3@RUNX3!1.14!12.91!RUNX3;;chr1:156470515..156470542,-!p2@MEF2D!1.13!65.84!MEF2D;;chr7:17338324..17338341,+!p3@AHR!1.13!41.96!AHR;;chr17:40440225..40440268,+!p3@STAT5A!1.13!16.14!STAT5A;;chr2:157198916..157198978,-!p2@NR4A2!1.12!42.60!NR4A2;;chr3:39195139..39195150,-!p3@CSRNP1!1.12!15.49!CSRNP1;;chr2:61108878..61108891,+!p5@REL!1.12!12.26!REL;;chr10:3827389..3827408,-!p1@KLF6!1.11!912.07!KLF6;;chr17:38474489..38474548,+!p1@RARA!1.11!375.03!RARA;;chr7:28725740..28725778,+!p1@C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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.51!3219.03!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.69!486.05!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.60!400.85!IRF8;;chr7:115670804..115670825,-!p1@TFEC!2.53!336.94!TFEC;;chr10:64018918..64018936,+!p2@ZNF365!2.34!217.53!ZNF365;;chr3:101546827..101546847,+!p2@NFKBIZ!2.24!238.18!NFKBIZ;;chr12:54778471..54778528,-!p1@ZNF385A!2.22!163.31!ZNF385A;;chr9:102584159..102584174,+!p2@NR4A3!2.20!273.69!NR4A3;;chr14:35872453..35872485,-!p2@NFKBIA!2.18!353.73!NFKBIA;;chr2:157189180..157189290,-!p1@NR4A2!2.13!655.81!NR4A2;;chr12:72056800..72056834,+!p1@THAP2!2.13!177.51!THAP2;;chr11:47399947..47399961,-!p3@SPI1!2.12!129.74!SPI1;;chr6:106534192..106534224,+!p1@PRDM1!2.10!341.46!PRDM1;;chr19:45971246..45971265,+!p1@FOSB!2.09!2119.13!FOSB;;chr10:35484053..35484076,+!p1@CREM!2.08!284.66!CREM;;chr10:64576105..64576133,-!p1@EGR2!2.08!239.47!EGR2;;chr14:35873947..35873965,-!p1@NFKBIA!2.05!6476.79!NFKBIA;;chr9:102584262..102584276,+!p1@NR4A3!2.05!238.83!NR4A3;;chr11:47400062..47400077,-!p2@SPI1!2.04!107.80!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.02!1156.06!MAFB;;chr3:101568349..101568365,+!p1@NFKBIZ!2.01!4923.11!NFKBIZ;;chr12:52445218..52445237,+!p1@NR4A1!1.99!1154.77!NR4A1;;chr16:31885093..31885165,+!p1@ZNF267!1.97!1310.33!ZNF267;;chr2:70142232..70142251,+!p1@MXD1!1.93!444.09!MXD1;;chr11:47399996..47400014,-!p4@SPI1!1.93!83.27!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!1.91!80.04!OLIG1;;chr2:61108695..61108753,+!p1@REL!1.89!493.80!REL;;chr2:68592394..68592405,+!p2@PLEK!1.89!76.81!PLEK;;chr4:103422499..103422632,+!p1@NFKB1!1.87!1435.56!NFKB1;;chr19:54041669..54041697,+!p2@ZNF331!1.87!73.59!ZNF331;;chr8:22550982..22550999,-!p1@EGR3!1.84!184.61!EGR3;;chr19:54058073..54058088,+!p1@ZNF331!1.82!64.55!ZNF331;;chr19:36391434..36391450,-!p1@NFKBID!1.81!122.00!NFKBID;;chr2:192015701..192015743,-!p1@STAT4!1.81!85.20!STAT4;;chr11:47400032..47400043,-!p5@SPI1!1.81!63.26!SPI1;;chr10:51572408..51572454,+!p3@NCOA4!1.79!338.23!NCOA4;;chr6:106534230..106534254,+!p2@PRDM1!1.78!142.65!PRDM1;;chr12:72056749..72056767,+!p6@THAP2!1.78!65.19!THAP2;;chr9:102584128..102584144,+!p3@NR4A3!1.75!101.99!NR4A3;;chr10:31288398..31288455,-!p2@ZNF438!1.75!64.55!ZNF438;;chr22:38597987..38598021,+!p2@MAFF!1.74!311.77!MAFF;;chr20:48599506..48599526,+!p1@SNAI1!1.73!323.39!SNAI1;;chr10:31288370..31288393,-!p3@ZNF438!1.72!50.99!ZNF438;;chr1:212782094..212782109,+!p1@ATF3!1.66!1150.90!ATF3;;chr2:145277640..145277771,-!p1@ZEB2!1.66!564.15!ZEB2;;chr10:104155480..104155534,+!p2@NFKB2!1.66!278.20!NFKB2;;chr12:72056773..72056796,+!p3@THAP2!1.66!57.45!THAP2;;chr2:68615063..68615089,+!p4@PLEK!1.66!44.54!PLEK;;chr8:123793988..123794016,+!p1@ZHX2!1.65!74.88!ZHX2;;chr9:102584241..102584261,+!p4@NR4A3!1.65!66.48!NR4A3;;chr12:54778351..54778378,-!p6@ZNF385A!1.65!43.89!ZNF385A;;chrX:153305787..153305807,-!p3@MECP2!1.64!42.60!MECP2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.63!481.53!ZC3H12A;;chr6:391743..391759,+!p1@IRF4!1.63!41.96!IRF4;;chr2:145275162..145275202,-!p2@ZEB2!1.62!227.21!ZEB2;;chr4:83822199..83822239,+!p2@THAP9!1.62!47.77!THAP9;;chr10:51572339..51572376,+!p4@NCOA4!1.61!87.14!NCOA4;;chr14:35872962..35873025,-!p3@NFKBIA!1.59!92.30!NFKBIA;;chr1:25256756..25256774,-!p1@RUNX3!1.59!69.71!RUNX3;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.83!PLAGL1;;chr9:129567282..129567353,+!p1@ZBTB43!1.57!453.13!ZBTB43;;chr21:30671235..30671253,+!p1@BACH1!1.57!435.70!BACH1;;chr6:12012170..12012245,+!p1@HIVEP1!1.56!170.41!HIVEP1;;chr14:35872494..35872511,-!p5@NFKBIA!1.56!46.47!NFKBIA;;chr7:50344289..50344323,+!p1@IKZF1!1.56!35.50!IKZF1;;chrX:153305962..153305995,-!p5@MECP2!1.56!35.50!MECP2;;chr10:35484090..35484104,+!p6@CREM!1.55!34.86!CREM;;chr4:106068026..106068084,+!p1@TET2!1.52!278.20!TET2;;chr13:41593425..41593480,-!p1@ELF1!1.50!188.48!ELF1;;chr21:30671690..30671762,+!p2@BACH1!1.50!101.99!BACH1;;chr5:142782823..142782854,-!p3@NR3C1!1.50!43.25!NR3C1;;chrX:129244454..129244488,-!p1@ELF4!1.49!205.26!ELF4;;chr10:104154246..104154347,+!p3@NFKB2!1.49!178.15!NFKB2;;chr21:40177845..40177863,+!p1@ETS2!1.48!1644.69!ETS2;;chr18:77155922..77155939,+!p1@NFATC1!1.48!77.46!NFATC1;;chr2:61108808..61108821,+!p3@REL!1.48!36.79!REL;;chr2:68615031..68615055,+!p3@PLEK!1.48!29.05!PLEK;;chr19:47616992..47617011,-!p4@ZC3H4!1.47!59.38!ZC3H4;;chr6:12012249..12012266,+!p5@HIVEP1!1.47!48.41!HIVEP1;;chr4:103423079..103423112,+!p4@NFKB1!1.47!28.40!NFKB1;;chr6:15246200..15246214,+!p2@JARID2!1.46!75.52!JARID2;;chr18:3448455..3448480,+!p5@TGIF1!1.46!50.35!TGIF1;;chr14:35872926..35872951,-!p4@NFKBIA!1.45!38.08!NFKBIA;;chr13:41593392..41593403,-!p7@ELF1!1.44!26.46!ELF1;;chr8:53373491..53373506,-!p4@ST18!1.44!26.46!ST18;;chr10:3827371..3827386,-!p2@KLF6!1.43!211.72!KLF6;;chr1:161736038..161736056,+!p4@ATF6!1.43!59.38!ATF6;;chr19:50432132..50432217,+!p2@ATF5!1.43!30.98!ATF5;;chr2:191885737..191885750,-!p4@STAT1!1.41!24.53!STAT1;;chr2:97202480..97202499,+!p1@ARID5A!1.40!233.02!ARID5A;;chr10:35484804..35484902,+!p2@CREM!1.40!89.08!CREM;;chr3:150126101..150126118,+!p6@TSC22D2!1.40!39.37!TSC22D2;;chr7:106809470..106809481,+!p2@HBP1!1.40!33.57!HBP1;;chr21:30673091..30673135,+!p7@BACH1!1.40!23.88!BACH1;;chr2:28618532..28618610,+!p4@FOSL2!1.39!40.02!FOSL2;;chr1:38325227..38325246,-!p2@MTF1!1.38!30.98!MTF1;;chr9:102584278..102584285,+!p5@NR4A3!1.38!23.24!NR4A3;;chr1:157108130..157108173,-!p1@ETV3!1.37!158.14!ETV3;;chr3:12329397..12329433,+!p2@PPARG!1.37!49.70!PPARG;;chr20:48809000..48809053,+!p12@CEBPB!1.37!29.69!CEBPB;;chr2:157189617..157189667,-!p4@NR4A2!1.37!22.59!NR4A2;;chr20:48807351..48807384,+!p1@CEBPB!1.36!2155.92!CEBPB;;chr9:110252035..110252057,-!p1@KLF4!1.36!338.23!KLF4;;chr6:44233252..44233296,-!p1@NFKBIE!1.36!206.56!NFKBIE;;chr3:39195037..39195069,-!p2@CSRNP1!1.36!133.62!CSRNP1;;chr8:80679993..80680011,-!p1@HEY1!1.36!31.63!HEY1;;chr4:103446513..103446530,+!p19@NFKB1!1.36!21.95!NFKB1;;chr17:38497662..38497713,+!p4@RARA!1.35!24.53!RARA;;chr2:145271342..145271377,-!p5@ZEB2!1.35!21.30!ZEB2;;chr6:12011943..12012015,+!p2@HIVEP1!1.34!66.48!HIVEP1;;chr19:45251395..45251432,+!p8@BCL3!1.34!20.66!BCL3;;chr21:30672433..30672464,+!p6@BACH1!1.34!20.66!BACH1;;chr2:28615716..28615733,+!p1@FOSL2!1.33!920.46!FOSL2;;chr11:65430554..65430579,-!p3@RELA!1.33!51.64!RELA;;chr2:61108771..61108789,+!p4@REL!1.33!30.34!REL;;chr12:52431016..52431071,+!p4@NR4A1!1.33!23.88!NR4A1;;chr3:5020939..5020952,+!p2@BHLHE40!1.32!61.97!BHLHE40;;chr21:36260295..36260310,-!p3@RUNX1!1.32!31.63!RUNX1;;chr10:35416142..35416169,+!p3@CREM!1.31!50.35!CREM;;chr19:19496539..19496576,+!p8@GATAD2A!1.31!33.57!GATAD2A;;chr18:3449618..3449634,+!p13@TGIF1!1.31!23.88!TGIF1;;chr4:106066776..106066791,+!p9@TET2!1.31!19.36!TET2;;chr11:47400045..47400060,-!p6@SPI1!1.31!19.36!SPI1;;chr8:81397820..81397836,+!p2@ZBTB10!1.30!23.88!ZBTB10;;chr4:83821967..83821998,+!p3@THAP9!1.30!23.24!THAP9;;chr2:238600998..238601013,+!p5@LRRFIP1!1.29!18.72!LRRFIP1;;chr12:11802753..11802834,+!p2@ETV6!1.28!86.49!ETV6;;chr12:96588368..96588394,+!p3@ELK3!1.28!48.41!ELK3;;chr18:3449527..3449582,+!p6@TGIF1!1.28!34.21!TGIF1;;chr2:8822176..8822196,+!p1@ID2!1.27!2410.89!ID2;;chr21:40177892..40177903,+!p2@ETS2!1.27!69.71!ETS2;;chr3:12330560..12330579,+!p1@PPARG!1.27!20.01!PPARG;;chr19:36389729..36389751,-!p3@NFKBID!1.27!17.43!NFKBID;;chr5:88178983..88179012,-!p1@MEF2C!1.26!131.03!MEF2C;;chr14:75745523..75745537,+!p1@FOS!1.25!1971.96!FOS;;chr12:96588219..96588263,+!p2@ELK3!1.25!117.48!ELK3;;chr19:45252008..45252024,+!p2@BCL3!1.25!54.87!BCL3;;chr14:35872414..35872425,-!p7@NFKBIA!1.25!18.72!NFKBIA;;chr1:212738742..212738755,+!p2@ATF3!1.25!16.78!ATF3;;chr6:106535598..106535637,+!p7@PRDM1!1.25!16.78!PRDM1;;chr6:28048343..28048354,+!p1@ZNF165!1.25!16.78!ZNF165;;chr2:113999360..113999386,-!p4@PAX8!1.25!16.78!PAX8;;chr3:170075436..170075520,+!p1@SKIL!1.24!343.40!SKIL;;chr7:17338266..17338282,+!p1@AHR!1.23!171.05!AHR;;chr2:238600933..238600985,+!p3@LRRFIP1!1.23!84.56!LRRFIP1;;chr4:83822294..83822306,+!p8@THAP9!1.23!16.14!THAP9;;chr11:47399920..47399931,-!p7@SPI1!1.23!16.14!SPI1;;chrX:129244430..129244442,-!p5@ELF4!1.23!16.14!ELF4;;chr7:115670792..115670797,-!p2@TFEC!1.23!16.14!TFEC;;chr21:34398234..34398250,+!p1@OLIG2!1.23!16.14!OLIG2;;chr7:149470641..149470694,-!p1@ZNF467!1.22!69.07!ZNF467;;chr4:106066712..106066728,+!p8@TET2!1.22!15.49!TET2;;chr19:54041574..54041589,+!p6@ZNF331!1.22!15.49!ZNF331;;chr1:935467..935484,-!p1@HES4!1.21!66.48!HES4;;chr17:79885537..79885554,-!p2@MAFG!1.21!29.05!MAFG;;chr3:193853927..193853944,+!p1@HES1!1.20!473.14!HES1;;chr21:36421535..36421610,-!p2@RUNX1!1.20!52.28!RUNX1;;chr18:3449586..3449617,+!p8@TGIF1!1.20!23.88!TGIF1;;chr10:31288329..31288353,-!p7@ZNF438!1.20!14.85!ZNF438;;chr12:72056706..72056717,+!p10@THAP2!1.20!14.85!THAP2;;chr10:104155455..104155479,+!p1@NFKB2!1.18!203.97!NFKB2;;chr9:94186101..94186122,-!p1@NFIL3!1.18!196.23!NFIL3;;chr22:38598086..38598105,+!p1@MAFF!1.18!148.46!MAFF;;chr19:36389839..36389857,-!p4@NFKBID!1.18!14.20!NFKBID;;chr12:48298765..48298783,-!p2@VDR!1.17!29.05!VDR;;chr3:5021026..5021035,+!p5@BHLHE40!1.16!16.78!BHLHE40;;chr4:106066730..106066754,+!p6@TET2!1.16!13.56!TET2;;chrX:153305741..153305753,-!p4@MECP2!1.16!13.56!MECP2;;chr17:38497715..38497734,+!p8@RARA!1.16!13.56!RARA;;chr19:45971060..45971122,+!p3@FOSB!1.16!13.56!FOSB;;chr11:615942..615957,-!p1@IRF7!1.15!123.93!IRF7;;chr2:70314240..70314256,+!p4@PCBP1!1.15!27.11!PCBP1;;chr2:185463247..185463263,+!p1@ZNF804A!1.14!22.59!ZNF804A;;chr2:145277882..145277967,-!p3@ZEB2!1.14!21.95!ZEB2;;chr10:104155659..104155676,+!p4@NFKB2!1.14!16.14!NFKB2;;chr1:25256439..25256476,-!p3@RUNX3!1.14!12.91!RUNX3;;chr1:156470515..156470542,-!p2@MEF2D!1.13!65.84!MEF2D;;chr7:17338324..17338341,+!p3@AHR!1.13!41.96!AHR;;chr17:40440225..40440268,+!p3@STAT5A!1.13!16.14!STAT5A;;chr2:157198916..157198978,-!p2@NR4A2!1.12!42.60!NR4A2;;chr3:39195139..39195150,-!p3@CSRNP1!1.12!15.49!CSRNP1;;chr2:61108878..61108891,+!p5@REL!1.12!12.26!REL;;chr10:3827389..3827408,-!p1@KLF6!1.11!912.07!KLF6;;chr17:38474489..38474548,+!p1@RARA!1.11!375.03!RARA;;chr7:28725740..28725778,+!p1@C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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 42: | ||
|fonse_treatment_closure=FF:0000625,FF:0000635,FF:0011104,FF:11878-125C6 | |fonse_treatment_closure=FF:0000625,FF:0000635,FF:0011104,FF:11878-125C6 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor2.CNhs13488.11878-125C6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor2.CNhs13488.11878-125C6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor2.CNhs13488.11878-125C6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor2.CNhs13488.11878-125C6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor2.CNhs13488.11878-125C6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11878-125C6 | |id=FF:11878-125C6 | ||
|is_a=EFO:0002091;;FF:0011104 | |is_a=EFO:0002091;;FF:0011104 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13488 | |||
|library_id_phase_based=2:CNhs13488 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11878 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11878 | |||
|name=CD14+ monocytes - treated with Candida, donor2 | |name=CD14+ monocytes - treated with Candida, donor2 | ||
|namespace= | |namespace= | ||
Line 46: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13488,LSID1025,release012,COMPLETED | |profile_hcage=CNhs13488,LSID1025,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 63: | Line 79: | ||
|rna_weight_ug=3.287565 | |rna_weight_ug=3.287565 | ||
|sample_age=51 | |sample_age=51 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 84: | Line 101: | ||
|top_motifs=FOSL2:6.52050805241;BACH2:6.2184198577;FOS_FOS{B,L1}_JUN{B,D}:6.12969421626;NFE2:6.10434856268;HLF:5.36646609595;NFE2L2:5.03989565259;PAX2:4.82385842633;CEBPA,B_DDIT3:4.71831693999;SREBF1,2:4.51878434348;NFKB1_REL_RELA:4.292479978;ATF4:3.91992037008;FOXP3:3.72977278338;NR1H4:3.66720179775;ATF5_CREB3:3.66670257545;NFIL3:3.6437675849;SPIB:3.6095595279;HSF1,2:3.45263831776;NFATC1..3:3.1802021358;JUN:3.17629157198;NANOG{mouse}:3.13740749297;SPI1:3.04438663053;CREB1:3.04267853809;ETS1,2:2.97576815481;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.90910136391;PAX3,7:2.86395492417;ATF6:2.80807382796;MAFB:2.7995993143;PAX8:2.70706902622;IRF7:2.69794026072;HOX{A5,B5}:2.57337538919;RUNX1..3:2.55827963562;NFE2L1:2.5312406569;IRF1,2:2.43565954293;DMAP1_NCOR{1,2}_SMARC:2.31830497235;ATF2:2.09828199002;STAT5{A,B}:2.02404853519;FOXN1:1.96155436373;XBP1:1.80403189763;PDX1:1.72366044199;STAT2,4,6:1.66897578869;TGIF1:1.46409286657;FOXO1,3,4:1.2728981511;EP300:1.09019423251;HIF1A:1.06705610028;PAX1,9:1.04865558594;HMGA1,2:1.03256059116;CDX1,2,4:0.944346670791;ELF1,2,4:0.895891491207;RXRA_VDR{dimer}:0.859967147446;ZBTB16:0.799587055391;HOXA9_MEIS1:0.709637760001;TBP:0.557865205843;PAX4:0.523232610717;ALX4:0.300964467142;MEF2{A,B,C,D}:0.290974238476;IKZF1:0.288190172716;RBPJ:0.280317886853;ESR1:0.251936758763;SRF:0.20692589494;EN1,2:0.206314376154;HMX1:0.20274241202;POU5F1:0.183734010147;POU2F1..3:0.172981479851;BPTF:0.167762889666;SMAD1..7,9:0.14781732086;OCT4_SOX2{dimer}:0.130051603681;PRDM1:0.124349872263;GLI1..3:0.108225054335;HES1:0.0690145543377;NANOG:0.0657380614497;IKZF2:0.0437549471622;AHR_ARNT_ARNT2:-0.0542783022872;VSX1,2:-0.059625856556;RORA:-0.073290642685;RFX2..5_RFXANK_RFXAP:-0.103692612918;PPARG:-0.130187686423;NR3C1:-0.154969474142;GATA4:-0.265417442769;POU3F1..4:-0.347568012014;NR6A1:-0.348839014235;HBP1_HMGB_SSRP1_UBTF:-0.426060228955;FOX{D1,D2}:-0.443475007194;EGR1..3:-0.447095003007;SOX2:-0.597402773034;FOXD3:-0.612433020336;MYB:-0.648212294935;TLX2:-0.661634409913;NKX3-1:-0.726363232404;FOXL1:-0.799492949828;PITX1..3:-0.846379071418;DBP:-0.863707276486;STAT1,3:-0.874586793723;NFIX:-0.890031982251;MZF1:-0.913572356759;TFCP2:-0.92678778765;FOXP1:-1.00182342474;PAX6:-1.02018569104;ESRRA:-1.082628918;FOXM1:-1.08990480034;ZNF238:-1.15138276335;ALX1:-1.16482566783;NKX2-1,4:-1.17322896368;MED-1{core}:-1.18860930239;T:-1.23463616903;NHLH1,2:-1.23793205491;HOX{A4,D4}:-1.24012306793;TEF:-1.31280511372;REST:-1.33763009904;PRRX1,2:-1.33879379583;RXR{A,B,G}:-1.3665658438;POU6F1:-1.40508976703;HNF1A:-1.41436128297;SOX5:-1.42528933216;TAL1_TCF{3,4,12}:-1.43024931921;TBX4,5:-1.44115073713;TFDP1:-1.44468066864;FOXA2:-1.45884197156;CUX2:-1.50064322711;GZF1:-1.50471203031;MYFfamily:-1.50789164163;NKX6-1,2:-1.51704195024;GATA6:-1.52091091344;MTE{core}:-1.54753396051;E2F1..5:-1.56805300132;CRX:-1.58658156946;ZNF384:-1.5946156978;HNF4A_NR2F1,2:-1.61547313125;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.6202185926;NKX2-3_NKX2-5:-1.62509470027;BREu{core}:-1.66982311288;ZFP161:-1.71479029815;TFAP2B:-1.76698830019;TEAD1:-1.78245872485;ADNP_IRX_SIX_ZHX:-1.78541658862;RFX1:-1.82937327773;FOX{F1,F2,J1}:-1.83751854488;SP1:-1.85531156936;SOX{8,9,10}:-1.86358677859;GTF2A1,2:-1.89546681755;PATZ1:-1.97124007927;HOX{A6,A7,B6,B7}:-1.97817656938;SPZ1:-1.97947541536;FOX{I1,J2}:-1.97949497836;TFAP4:-1.98516942205;POU1F1:-2.03169988125;GCM1,2:-2.03468535834;ZBTB6:-2.0396766447;MYBL2:-2.06101008986;bHLH_family:-2.07471294875;TP53:-2.0751757957;MTF1:-2.1162861648;GFI1B:-2.11661652104;MAZ:-2.13722059818;NKX3-2:-2.19520866474;GTF2I:-2.20047241496;NFY{A,B,C}:-2.2243635344;CDC5L:-2.24637469549;PBX1:-2.29946174163;ELK1,4_GABP{A,B1}:-2.30872459164;ZEB1:-2.33635672984;RREB1:-2.34899481717;TLX1..3_NFIC{dimer}:-2.35462894382;XCPE1{core}:-2.38612022749;TFAP2{A,C}:-2.49203897869;AIRE:-2.49633613902;HIC1:-2.50853150624;SNAI1..3:-2.61781742874;ZNF148:-2.62491293785;ONECUT1,2:-2.62917397987;ZIC1..3:-2.68160427671;FOXQ1:-2.71304862816;MYOD1:-2.73046697175;NR5A1,2:-2.74041477129;ARID5B:-2.76619515515;SOX17:-2.83401988128;EBF1:-2.83692821129;UFEwm:-2.85677779454;KLF4:-3.07054807886;NRF1:-3.07670218874;GFI1:-3.17160912373;NKX2-2,8:-3.19817930859;LHX3,4:-3.31659398218;ZNF423:-3.34370518398;LMO2:-3.38114059114;HAND1,2:-3.40686748937;EVI1:-3.4423882862;AR:-3.4469220281;YY1:-3.82879229547;ZNF143:-3.87860233806;PAX5:-3.97609564329;LEF1_TCF7_TCF7L1,2:-3.98564280107;TOPORS:-4.04202531741 | |top_motifs=FOSL2:6.52050805241;BACH2:6.2184198577;FOS_FOS{B,L1}_JUN{B,D}:6.12969421626;NFE2:6.10434856268;HLF:5.36646609595;NFE2L2:5.03989565259;PAX2:4.82385842633;CEBPA,B_DDIT3:4.71831693999;SREBF1,2:4.51878434348;NFKB1_REL_RELA:4.292479978;ATF4:3.91992037008;FOXP3:3.72977278338;NR1H4:3.66720179775;ATF5_CREB3:3.66670257545;NFIL3:3.6437675849;SPIB:3.6095595279;HSF1,2:3.45263831776;NFATC1..3:3.1802021358;JUN:3.17629157198;NANOG{mouse}:3.13740749297;SPI1:3.04438663053;CREB1:3.04267853809;ETS1,2:2.97576815481;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.90910136391;PAX3,7:2.86395492417;ATF6:2.80807382796;MAFB:2.7995993143;PAX8:2.70706902622;IRF7:2.69794026072;HOX{A5,B5}:2.57337538919;RUNX1..3:2.55827963562;NFE2L1:2.5312406569;IRF1,2:2.43565954293;DMAP1_NCOR{1,2}_SMARC:2.31830497235;ATF2:2.09828199002;STAT5{A,B}:2.02404853519;FOXN1:1.96155436373;XBP1:1.80403189763;PDX1:1.72366044199;STAT2,4,6:1.66897578869;TGIF1:1.46409286657;FOXO1,3,4:1.2728981511;EP300:1.09019423251;HIF1A:1.06705610028;PAX1,9:1.04865558594;HMGA1,2:1.03256059116;CDX1,2,4:0.944346670791;ELF1,2,4:0.895891491207;RXRA_VDR{dimer}:0.859967147446;ZBTB16:0.799587055391;HOXA9_MEIS1:0.709637760001;TBP:0.557865205843;PAX4:0.523232610717;ALX4:0.300964467142;MEF2{A,B,C,D}:0.290974238476;IKZF1:0.288190172716;RBPJ:0.280317886853;ESR1:0.251936758763;SRF:0.20692589494;EN1,2:0.206314376154;HMX1:0.20274241202;POU5F1:0.183734010147;POU2F1..3:0.172981479851;BPTF:0.167762889666;SMAD1..7,9:0.14781732086;OCT4_SOX2{dimer}:0.130051603681;PRDM1:0.124349872263;GLI1..3:0.108225054335;HES1:0.0690145543377;NANOG:0.0657380614497;IKZF2:0.0437549471622;AHR_ARNT_ARNT2:-0.0542783022872;VSX1,2:-0.059625856556;RORA:-0.073290642685;RFX2..5_RFXANK_RFXAP:-0.103692612918;PPARG:-0.130187686423;NR3C1:-0.154969474142;GATA4:-0.265417442769;POU3F1..4:-0.347568012014;NR6A1:-0.348839014235;HBP1_HMGB_SSRP1_UBTF:-0.426060228955;FOX{D1,D2}:-0.443475007194;EGR1..3:-0.447095003007;SOX2:-0.597402773034;FOXD3:-0.612433020336;MYB:-0.648212294935;TLX2:-0.661634409913;NKX3-1:-0.726363232404;FOXL1:-0.799492949828;PITX1..3:-0.846379071418;DBP:-0.863707276486;STAT1,3:-0.874586793723;NFIX:-0.890031982251;MZF1:-0.913572356759;TFCP2:-0.92678778765;FOXP1:-1.00182342474;PAX6:-1.02018569104;ESRRA:-1.082628918;FOXM1:-1.08990480034;ZNF238:-1.15138276335;ALX1:-1.16482566783;NKX2-1,4:-1.17322896368;MED-1{core}:-1.18860930239;T:-1.23463616903;NHLH1,2:-1.23793205491;HOX{A4,D4}:-1.24012306793;TEF:-1.31280511372;REST:-1.33763009904;PRRX1,2:-1.33879379583;RXR{A,B,G}:-1.3665658438;POU6F1:-1.40508976703;HNF1A:-1.41436128297;SOX5:-1.42528933216;TAL1_TCF{3,4,12}:-1.43024931921;TBX4,5:-1.44115073713;TFDP1:-1.44468066864;FOXA2:-1.45884197156;CUX2:-1.50064322711;GZF1:-1.50471203031;MYFfamily:-1.50789164163;NKX6-1,2:-1.51704195024;GATA6:-1.52091091344;MTE{core}:-1.54753396051;E2F1..5:-1.56805300132;CRX:-1.58658156946;ZNF384:-1.5946156978;HNF4A_NR2F1,2:-1.61547313125;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.6202185926;NKX2-3_NKX2-5:-1.62509470027;BREu{core}:-1.66982311288;ZFP161:-1.71479029815;TFAP2B:-1.76698830019;TEAD1:-1.78245872485;ADNP_IRX_SIX_ZHX:-1.78541658862;RFX1:-1.82937327773;FOX{F1,F2,J1}:-1.83751854488;SP1:-1.85531156936;SOX{8,9,10}:-1.86358677859;GTF2A1,2:-1.89546681755;PATZ1:-1.97124007927;HOX{A6,A7,B6,B7}:-1.97817656938;SPZ1:-1.97947541536;FOX{I1,J2}:-1.97949497836;TFAP4:-1.98516942205;POU1F1:-2.03169988125;GCM1,2:-2.03468535834;ZBTB6:-2.0396766447;MYBL2:-2.06101008986;bHLH_family:-2.07471294875;TP53:-2.0751757957;MTF1:-2.1162861648;GFI1B:-2.11661652104;MAZ:-2.13722059818;NKX3-2:-2.19520866474;GTF2I:-2.20047241496;NFY{A,B,C}:-2.2243635344;CDC5L:-2.24637469549;PBX1:-2.29946174163;ELK1,4_GABP{A,B1}:-2.30872459164;ZEB1:-2.33635672984;RREB1:-2.34899481717;TLX1..3_NFIC{dimer}:-2.35462894382;XCPE1{core}:-2.38612022749;TFAP2{A,C}:-2.49203897869;AIRE:-2.49633613902;HIC1:-2.50853150624;SNAI1..3:-2.61781742874;ZNF148:-2.62491293785;ONECUT1,2:-2.62917397987;ZIC1..3:-2.68160427671;FOXQ1:-2.71304862816;MYOD1:-2.73046697175;NR5A1,2:-2.74041477129;ARID5B:-2.76619515515;SOX17:-2.83401988128;EBF1:-2.83692821129;UFEwm:-2.85677779454;KLF4:-3.07054807886;NRF1:-3.07670218874;GFI1:-3.17160912373;NKX2-2,8:-3.19817930859;LHX3,4:-3.31659398218;ZNF423:-3.34370518398;LMO2:-3.38114059114;HAND1,2:-3.40686748937;EVI1:-3.4423882862;AR:-3.4469220281;YY1:-3.82879229547;ZNF143:-3.87860233806;PAX5:-3.97609564329;LEF1_TCF7_TCF7L1,2:-3.98564280107;TOPORS:-4.04202531741 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11878-125C6;search_select_hide=table117:FF:11878-125C6 | |||
}} | }} |
Latest revision as of 18:25, 4 June 2020
Name: | CD14+ monocytes - treated with Candida, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13488 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13488
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13488
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.117 |
10 | 10 | 0.018 |
100 | 100 | 0.896 |
101 | 101 | 0.828 |
102 | 102 | 0.899 |
103 | 103 | 0.331 |
104 | 104 | 0.538 |
105 | 105 | 0.0689 |
106 | 106 | 0.00123 |
107 | 107 | 0.389 |
108 | 108 | 0.633 |
109 | 109 | 0.431 |
11 | 11 | 0.225 |
110 | 110 | 0.158 |
111 | 111 | 0.0987 |
112 | 112 | 0.373 |
113 | 113 | 0.51 |
114 | 114 | 0.0357 |
115 | 115 | 0.197 |
116 | 116 | 0.987 |
117 | 117 | 0.0746 |
118 | 118 | 0.228 |
119 | 119 | 0.137 |
12 | 12 | 0.307 |
120 | 120 | 0.944 |
121 | 121 | 0.503 |
122 | 122 | 0.563 |
123 | 123 | 0.359 |
124 | 124 | 0.616 |
125 | 125 | 0.335 |
126 | 126 | 0.27 |
127 | 127 | 0.592 |
128 | 128 | 0.0493 |
129 | 129 | 0.471 |
13 | 13 | 0.0834 |
130 | 130 | 0.245 |
131 | 131 | 0.969 |
132 | 132 | 0.0392 |
133 | 133 | 0.67 |
134 | 134 | 0.585 |
135 | 135 | 0.932 |
136 | 136 | 0.941 |
137 | 137 | 0.0363 |
138 | 138 | 0.373 |
139 | 139 | 0.0824 |
14 | 14 | 0.549 |
140 | 140 | 0.195 |
141 | 141 | 0.306 |
142 | 142 | 0.01 |
143 | 143 | 0.0213 |
144 | 144 | 0.626 |
145 | 145 | 0.455 |
146 | 146 | 0.817 |
147 | 147 | 0.678 |
148 | 148 | 0.0195 |
149 | 149 | 0.885 |
15 | 15 | 0.198 |
150 | 150 | 0.353 |
151 | 151 | 0.528 |
152 | 152 | 0.433 |
153 | 153 | 0.615 |
154 | 154 | 0.657 |
155 | 155 | 0.989 |
156 | 156 | 0.764 |
157 | 157 | 0.403 |
158 | 158 | 0.0179 |
159 | 159 | 0.305 |
16 | 16 | 0.409 |
160 | 160 | 0.434 |
161 | 161 | 0.444 |
162 | 162 | 0.189 |
163 | 163 | 0.0932 |
164 | 164 | 0.113 |
165 | 165 | 0.326 |
166 | 166 | 0.642 |
167 | 167 | 0.147 |
168 | 168 | 0.169 |
169 | 169 | 0.0324 |
17 | 17 | 0.262 |
18 | 18 | 0.103 |
19 | 19 | 0.57 |
2 | 2 | 0.376 |
20 | 20 | 0.191 |
21 | 21 | 0.742 |
22 | 22 | 0.41 |
23 | 23 | 0.0667 |
24 | 24 | 0.445 |
25 | 25 | 0.498 |
26 | 26 | 0.075 |
27 | 27 | 0.448 |
28 | 28 | 0.436 |
29 | 29 | 0.259 |
3 | 3 | 0.182 |
30 | 30 | 0.428 |
31 | 31 | 0.773 |
32 | 32 | 0.373 |
33 | 33 | 0.285 |
34 | 34 | 0.844 |
35 | 35 | 0.106 |
36 | 36 | 0.0561 |
37 | 37 | 0.0767 |
38 | 38 | 0.359 |
39 | 39 | 0.911 |
4 | 4 | 0.837 |
40 | 40 | 0.181 |
41 | 41 | 0.0125 |
42 | 42 | 0.39 |
43 | 43 | 0.0254 |
44 | 44 | 0.5 |
45 | 45 | 0.852 |
46 | 46 | 0.229 |
47 | 47 | 0.678 |
48 | 48 | 0.591 |
49 | 49 | 0.12 |
5 | 5 | 0.338 |
50 | 50 | 0.972 |
51 | 51 | 0.588 |
52 | 52 | 0.458 |
53 | 53 | 0.623 |
54 | 54 | 0.503 |
55 | 55 | 0.613 |
56 | 56 | 0.683 |
57 | 57 | 0.839 |
58 | 58 | 0.199 |
59 | 59 | 0.333 |
6 | 6 | 0.836 |
60 | 60 | 0.0787 |
61 | 61 | 0.621 |
62 | 62 | 0.124 |
63 | 63 | 0.616 |
64 | 64 | 0.435 |
65 | 65 | 0.269 |
66 | 66 | 0.305 |
67 | 67 | 0.482 |
68 | 68 | 0.803 |
69 | 69 | 0.447 |
7 | 7 | 0.255 |
70 | 70 | 0.0819 |
71 | 71 | 0.0297 |
72 | 72 | 0.166 |
73 | 73 | 0.204 |
74 | 74 | 0.0485 |
75 | 75 | 0.153 |
76 | 76 | 0.104 |
77 | 77 | 0.707 |
78 | 78 | 0.116 |
79 | 79 | 0.602 |
8 | 8 | 0.415 |
80 | 80 | 0.251 |
81 | 81 | 0.354 |
82 | 82 | 0.306 |
83 | 83 | 0.00723 |
84 | 84 | 0.109 |
85 | 85 | 0.054 |
86 | 86 | 0.0474 |
87 | 87 | 0.655 |
88 | 88 | 0.786 |
89 | 89 | 0.311 |
9 | 9 | 0.483 |
90 | 90 | 0.163 |
91 | 91 | 0.316 |
92 | 92 | 0.37 |
93 | 93 | 0.414 |
94 | 94 | 0.0982 |
95 | 95 | 0.502 |
96 | 96 | 0.482 |
97 | 97 | 0.553 |
98 | 98 | 0.165 |
99 | 99 | 0.0271 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13488
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011104 human CD14-positive monocytes - treated with Candida sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000635 (Candida treatment sample)
0011104 (human CD14-positive monocytes - treated with Candida sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)