FF:11900-125F1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004733 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007784;DRR008656;DRZ000081;DRZ001466;DRZ011431;DRZ012816 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001737,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000072,UBERON:0010317,UBERON:0000065,UBERON:0001004,UBERON:0001557 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000343,FF:0000350,FF:0104978,FF:0100297,FF:0101120,FF:0011132 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
Line 35: | Line 41: | ||
|fonse_treatment_closure=FF:0000343,FF:0011132,FF:11900-125F1 | |fonse_treatment_closure=FF:0000343,FF:0011132,FF:11900-125F1 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520mock%2520treated%252c%2520biol_rep3.CNhs13501.11900-125F1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520mock%2520treated%252c%2520biol_rep3.CNhs13501.11900-125F1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520mock%2520treated%252c%2520biol_rep3.CNhs13501.11900-125F1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520mock%2520treated%252c%2520biol_rep3.CNhs13501.11900-125F1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520mock%2520treated%252c%2520biol_rep3.CNhs13501.11900-125F1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11900-125F1 | |id=FF:11900-125F1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011132 | ||
|is_obsolete= | |||
|library_id=CNhs13501 | |||
|library_id_phase_based=2:CNhs13501 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11900 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11900 | |||
|name=Hep-2 cells mock treated, biol_rep3 | |name=Hep-2 cells mock treated, biol_rep3 | ||
|namespace= | |namespace= | ||
Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13501,LSID1025,release012,COMPLETED | |profile_hcage=CNhs13501,LSID1025,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 78: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=56 | |sample_age=56 | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=Hep-2 | |sample_cell_line=Hep-2 | ||
Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.24497691491088e-261!GO:0043226;organelle;2.42428443909266e-215!GO:0043229;intracellular organelle;1.2271922424923e-214!GO:0043231;intracellular membrane-bound organelle;2.78933809924933e-214!GO:0043227;membrane-bound organelle;2.7910214431272e-214!GO:0005737;cytoplasm;3.21123813316635e-200!GO:0044422;organelle part;4.00831358337316e-181!GO:0044446;intracellular organelle part;2.73270942738054e-179!GO:0044444;cytoplasmic part;5.62959519447107e-151!GO:0032991;macromolecular complex;1.20071967859622e-123!GO:0030529;ribonucleoprotein complex;8.75627780131884e-102!GO:0005739;mitochondrion;3.22812907251769e-98!GO:0044237;cellular metabolic process;7.77446606475867e-96!GO:0044238;primary metabolic process;5.03415965314122e-92!GO:0043233;organelle lumen;7.40393008869331e-92!GO:0031974;membrane-enclosed lumen;7.40393008869331e-92!GO:0044428;nuclear part;9.20347802173554e-92!GO:0003723;RNA binding;8.79249138853071e-86!GO:0005634;nucleus;7.62600319006966e-84!GO:0043170;macromolecule metabolic process;4.65646778965547e-78!GO:0005515;protein binding;6.71989904835622e-65!GO:0006396;RNA processing;1.72035199132099e-64!GO:0044429;mitochondrial part;2.67053937057619e-63!GO:0043234;protein complex;3.31947687427737e-63!GO:0005840;ribosome;4.09981027028218e-61!GO:0031090;organelle membrane;7.67323915465547e-59!GO:0006412;translation;1.49968088367127e-57!GO:0031967;organelle envelope;2.42666483194409e-56!GO:0031975;envelope;3.87719226128388e-56!GO:0031981;nuclear lumen;3.86714562168055e-54!GO:0003735;structural constituent of ribosome;1.56625063241316e-52!GO:0009058;biosynthetic process;2.27213088830834e-51!GO:0044249;cellular biosynthetic process;9.53190412849731e-51!GO:0016043;cellular component organization and biogenesis;1.85963213225932e-47!GO:0033279;ribosomal subunit;3.24298990395813e-46!GO:0006259;DNA metabolic process;2.69720714956665e-45!GO:0043228;non-membrane-bound organelle;5.45225486509622e-45!GO:0043232;intracellular non-membrane-bound organelle;5.45225486509622e-45!GO:0019538;protein metabolic process;1.05815172502797e-43!GO:0016071;mRNA metabolic process;2.13119343549207e-43!GO:0015031;protein transport;8.59811502157726e-43!GO:0009059;macromolecule biosynthetic process;1.13161167214537e-42!GO:0033036;macromolecule localization;1.68021520321141e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.78968290640758e-42!GO:0005829;cytosol;6.69299852078547e-42!GO:0008380;RNA splicing;4.093625023625e-41!GO:0043283;biopolymer metabolic process;1.55082472717575e-40!GO:0005740;mitochondrial envelope;2.65139707535825e-40!GO:0006397;mRNA processing;1.8513999726956e-39!GO:0044260;cellular macromolecule metabolic process;7.11826151091314e-39!GO:0045184;establishment of protein localization;1.30852348172338e-38!GO:0044267;cellular protein metabolic process;1.76356022045761e-38!GO:0019866;organelle inner membrane;2.11003195944418e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.22780076571272e-38!GO:0008104;protein localization;2.93646225543545e-38!GO:0031966;mitochondrial membrane;7.37108079111712e-38!GO:0010467;gene expression;1.84604537235504e-36!GO:0065003;macromolecular complex assembly;3.98520352743517e-36!GO:0005743;mitochondrial inner membrane;5.67693695786758e-36!GO:0006996;organelle organization and biogenesis;6.24656513510404e-36!GO:0046907;intracellular transport;3.09231987229728e-33!GO:0007049;cell cycle;1.07075155486719e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.50387844887136e-31!GO:0005654;nucleoplasm;6.34685215226137e-31!GO:0022607;cellular component assembly;6.73409797043682e-31!GO:0005681;spliceosome;5.25816078030804e-30!GO:0000166;nucleotide binding;1.89855540606321e-28!GO:0031980;mitochondrial lumen;2.97390170783433e-28!GO:0005759;mitochondrial matrix;2.97390170783433e-28!GO:0006886;intracellular protein transport;2.97390170783433e-28!GO:0005730;nucleolus;4.92759379805389e-27!GO:0016462;pyrophosphatase activity;2.06451859697371e-26!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.10215891891895e-26!GO:0006974;response to DNA damage stimulus;2.10215891891895e-26!GO:0016817;hydrolase activity, acting on acid anhydrides;3.05782730043588e-26!GO:0006119;oxidative phosphorylation;1.19289270308411e-25!GO:0044445;cytosolic part;1.80157517945444e-25!GO:0017111;nucleoside-triphosphatase activity;1.87212803953369e-25!GO:0000278;mitotic cell cycle;4.24003638420073e-25!GO:0015934;large ribosomal subunit;4.9967349717234e-25!GO:0044455;mitochondrial membrane part;5.26607796997432e-25!GO:0005694;chromosome;6.14635164053664e-25!GO:0044451;nucleoplasm part;2.32493193881829e-24!GO:0022402;cell cycle process;3.15760261019367e-24!GO:0044427;chromosomal part;4.98896373542698e-23!GO:0003676;nucleic acid binding;9.32794531895069e-23!GO:0012505;endomembrane system;1.18767290026503e-22!GO:0015935;small ribosomal subunit;2.131684090695e-22!GO:0051186;cofactor metabolic process;3.03026394844293e-22!GO:0006281;DNA repair;3.05074629444144e-22!GO:0016874;ligase activity;9.82783529302144e-22!GO:0006457;protein folding;1.55403854249958e-21!GO:0005783;endoplasmic reticulum;6.54956375918707e-21!GO:0051649;establishment of cellular localization;6.95065783029508e-21!GO:0051641;cellular localization;8.24583104339266e-21!GO:0006260;DNA replication;2.38214772120373e-20!GO:0042254;ribosome biogenesis and assembly;4.83724130689151e-20!GO:0022403;cell cycle phase;8.65814540093892e-20!GO:0032553;ribonucleotide binding;1.22971568454372e-19!GO:0032555;purine ribonucleotide binding;1.22971568454372e-19!GO:0017076;purine nucleotide binding;1.71375217883391e-19!GO:0009719;response to endogenous stimulus;1.90400333535552e-19!GO:0005746;mitochondrial respiratory chain;2.96965415270879e-19!GO:0022618;protein-RNA complex assembly;6.73583535977944e-19!GO:0005761;mitochondrial ribosome;7.18846428445499e-19!GO:0000313;organellar ribosome;7.18846428445499e-19!GO:0044432;endoplasmic reticulum part;1.76876000957525e-18!GO:0000087;M phase of mitotic cell cycle;2.26160204785467e-18!GO:0005524;ATP binding;3.48965695326062e-18!GO:0007067;mitosis;4.84543380278473e-18!GO:0016887;ATPase activity;5.07380258731821e-18!GO:0032559;adenyl ribonucleotide binding;6.02612670913137e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.14556279852376e-18!GO:0051276;chromosome organization and biogenesis;7.1700943178424e-18!GO:0006732;coenzyme metabolic process;9.02507916940442e-18!GO:0030554;adenyl nucleotide binding;1.44847633235093e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.76017653939459e-17!GO:0044265;cellular macromolecule catabolic process;1.88604565955775e-17!GO:0044248;cellular catabolic process;2.24587788194851e-17!GO:0042623;ATPase activity, coupled;3.56788813164324e-17!GO:0006512;ubiquitin cycle;4.40474710156317e-17!GO:0050136;NADH dehydrogenase (quinone) activity;4.40474710156317e-17!GO:0003954;NADH dehydrogenase activity;4.40474710156317e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.40474710156317e-17!GO:0008135;translation factor activity, nucleic acid binding;5.61453155257939e-17!GO:0044453;nuclear membrane part;1.04644629882511e-16!GO:0006399;tRNA metabolic process;1.21420061636091e-16!GO:0005635;nuclear envelope;1.25377368347878e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.54685613516286e-16!GO:0051301;cell division;8.70136752219762e-16!GO:0000279;M phase;9.27236726340218e-16!GO:0006605;protein targeting;1.60437102476134e-15!GO:0031965;nuclear membrane;1.67906421792493e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.82407438222716e-15!GO:0042773;ATP synthesis coupled electron transport;1.82407438222716e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.29172390132504e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.01122343129099e-15!GO:0000375;RNA splicing, via transesterification reactions;3.01122343129099e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.01122343129099e-15!GO:0030964;NADH dehydrogenase complex (quinone);3.83265362972732e-15!GO:0045271;respiratory chain complex I;3.83265362972732e-15!GO:0005747;mitochondrial respiratory chain complex I;3.83265362972732e-15!GO:0019941;modification-dependent protein catabolic process;4.32334347405546e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.32334347405546e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.35263981984436e-15!GO:0044257;cellular protein catabolic process;6.2455775303007e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.67266373545049e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.03699400562352e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.07573773765079e-14!GO:0051082;unfolded protein binding;1.19605689560037e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;2.21483061571845e-14!GO:0048770;pigment granule;2.54052449644055e-14!GO:0042470;melanosome;2.54052449644055e-14!GO:0009057;macromolecule catabolic process;2.68133700733213e-14!GO:0005789;endoplasmic reticulum membrane;2.7929077899498e-14!GO:0005643;nuclear pore;2.92388335310057e-14!GO:0043285;biopolymer catabolic process;3.76711536796394e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.81073343710343e-14!GO:0009055;electron carrier activity;7.1393181147156e-14!GO:0006364;rRNA processing;7.17816263124036e-14!GO:0000785;chromatin;7.8253941912095e-14!GO:0006323;DNA packaging;7.91158229190111e-14!GO:0016072;rRNA metabolic process;1.85977930257096e-13!GO:0003743;translation initiation factor activity;2.81894039335313e-13!GO:0008134;transcription factor binding;3.22531476225705e-13!GO:0016070;RNA metabolic process;3.30159026506775e-13!GO:0065002;intracellular protein transport across a membrane;5.52294670248894e-13!GO:0050657;nucleic acid transport;6.00982656307097e-13!GO:0051236;establishment of RNA localization;6.00982656307097e-13!GO:0050658;RNA transport;6.00982656307097e-13!GO:0006403;RNA localization;7.02572133015429e-13!GO:0009259;ribonucleotide metabolic process;8.242073177685e-13!GO:0048193;Golgi vesicle transport;9.31362038157877e-13!GO:0051188;cofactor biosynthetic process;1.90438053951935e-12!GO:0000074;regulation of progression through cell cycle;2.092005117168e-12!GO:0004386;helicase activity;2.092005117168e-12!GO:0051726;regulation of cell cycle;2.14108484279349e-12!GO:0006333;chromatin assembly or disassembly;2.16084129912875e-12!GO:0006913;nucleocytoplasmic transport;3.24233119905562e-12!GO:0006163;purine nucleotide metabolic process;3.34218864840031e-12!GO:0046930;pore complex;4.27013767794802e-12!GO:0065004;protein-DNA complex assembly;5.55241744094396e-12!GO:0006413;translational initiation;5.77384317010932e-12!GO:0051169;nuclear transport;1.0393118264467e-11!GO:0008026;ATP-dependent helicase activity;1.27851483759184e-11!GO:0016604;nuclear body;1.41928161155665e-11!GO:0030163;protein catabolic process;1.89524452628284e-11!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.92064130005899e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.44130816202653e-11!GO:0009260;ribonucleotide biosynthetic process;3.70878152735016e-11!GO:0009150;purine ribonucleotide metabolic process;3.70878152735016e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.59379442349544e-11!GO:0051028;mRNA transport;4.93208400907897e-11!GO:0005794;Golgi apparatus;5.02495523441221e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.06192446313825e-11!GO:0006164;purine nucleotide biosynthetic process;6.81809585880827e-11!GO:0012501;programmed cell death;1.22565100603843e-10!GO:0006915;apoptosis;2.06725003729498e-10!GO:0016491;oxidoreductase activity;2.2070129784593e-10!GO:0009108;coenzyme biosynthetic process;2.76349470834411e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.25948949806499e-10!GO:0004812;aminoacyl-tRNA ligase activity;3.25948949806499e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.25948949806499e-10!GO:0009060;aerobic respiration;3.45144418629332e-10!GO:0006261;DNA-dependent DNA replication;3.74958465894867e-10!GO:0009117;nucleotide metabolic process;3.91936056329414e-10!GO:0009199;ribonucleoside triphosphate metabolic process;4.40781994072768e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.44481368442872e-10!GO:0009141;nucleoside triphosphate metabolic process;5.22821627437267e-10!GO:0007005;mitochondrion organization and biogenesis;5.39723674088753e-10!GO:0009056;catabolic process;6.35776536613444e-10!GO:0006461;protein complex assembly;6.6635650201123e-10!GO:0008565;protein transporter activity;6.68017319470536e-10!GO:0016779;nucleotidyltransferase activity;7.43485401543925e-10!GO:0009152;purine ribonucleotide biosynthetic process;7.55301248441377e-10!GO:0043038;amino acid activation;7.65357433576678e-10!GO:0006418;tRNA aminoacylation for protein translation;7.65357433576678e-10!GO:0043039;tRNA aminoacylation;7.65357433576678e-10!GO:0006334;nucleosome assembly;7.88287847121126e-10!GO:0006446;regulation of translational initiation;8.16545068445994e-10!GO:0016192;vesicle-mediated transport;8.71485589990646e-10!GO:0030532;small nuclear ribonucleoprotein complex;9.15186789615723e-10!GO:0043412;biopolymer modification;1.02347438713178e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.0867047723109e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.0867047723109e-09!GO:0008639;small protein conjugating enzyme activity;1.14030534865881e-09!GO:0045333;cellular respiration;1.63371750982414e-09!GO:0015986;ATP synthesis coupled proton transport;1.63371750982414e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.63371750982414e-09!GO:0008219;cell death;2.21356518755866e-09!GO:0016265;death;2.21356518755866e-09!GO:0003697;single-stranded DNA binding;2.41225753035716e-09!GO:0006366;transcription from RNA polymerase II promoter;2.73269428003626e-09!GO:0016607;nuclear speck;2.88698043937215e-09!GO:0031497;chromatin assembly;2.96631845663502e-09!GO:0046034;ATP metabolic process;3.15773117169845e-09!GO:0019787;small conjugating protein ligase activity;3.300111859353e-09!GO:0016787;hydrolase activity;3.52392950356297e-09!GO:0004842;ubiquitin-protein ligase activity;3.63618707146061e-09!GO:0009142;nucleoside triphosphate biosynthetic process;3.69801538917129e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.69801538917129e-09!GO:0017038;protein import;5.30017785912773e-09!GO:0043566;structure-specific DNA binding;7.20041902311805e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.78753729209263e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.78753729209263e-09!GO:0000775;chromosome, pericentric region;1.01939029746871e-08!GO:0019829;cation-transporting ATPase activity;1.26030490824711e-08!GO:0006099;tricarboxylic acid cycle;1.58413754961294e-08!GO:0046356;acetyl-CoA catabolic process;1.58413754961294e-08!GO:0006084;acetyl-CoA metabolic process;1.70587159857906e-08!GO:0016881;acid-amino acid ligase activity;1.98347355574791e-08!GO:0006754;ATP biosynthetic process;2.32197605244314e-08!GO:0006753;nucleoside phosphate metabolic process;2.32197605244314e-08!GO:0016740;transferase activity;2.40709359862658e-08!GO:0005819;spindle;2.74186032776305e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.02164735220183e-08!GO:0051329;interphase of mitotic cell cycle;3.56263010395199e-08!GO:0006752;group transfer coenzyme metabolic process;3.57427364055208e-08!GO:0008033;tRNA processing;4.76963789674918e-08!GO:0016469;proton-transporting two-sector ATPase complex;5.31453601754196e-08!GO:0051325;interphase;6.64422920935464e-08!GO:0006091;generation of precursor metabolites and energy;7.23602129573046e-08!GO:0003712;transcription cofactor activity;8.77701704384089e-08!GO:0005657;replication fork;9.59960245818728e-08!GO:0005793;ER-Golgi intermediate compartment;1.19846022073362e-07!GO:0006464;protein modification process;1.24644679465023e-07!GO:0008094;DNA-dependent ATPase activity;1.52420769182381e-07!GO:0016568;chromatin modification;1.72835567507822e-07!GO:0051187;cofactor catabolic process;1.7780870144715e-07!GO:0043623;cellular protein complex assembly;1.84460975947141e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.14291643448018e-07!GO:0003899;DNA-directed RNA polymerase activity;2.15981481768244e-07!GO:0045259;proton-transporting ATP synthase complex;2.82274969553262e-07!GO:0009109;coenzyme catabolic process;3.269271068989e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.31257450388085e-07!GO:0015630;microtubule cytoskeleton;3.4925731901656e-07!GO:0005762;mitochondrial large ribosomal subunit;3.95273086699332e-07!GO:0000315;organellar large ribosomal subunit;3.95273086699332e-07!GO:0000075;cell cycle checkpoint;4.14414868442411e-07!GO:0008654;phospholipid biosynthetic process;4.41421416340754e-07!GO:0005667;transcription factor complex;4.42074372498015e-07!GO:0030120;vesicle coat;5.8364489203926e-07!GO:0030662;coated vesicle membrane;5.8364489203926e-07!GO:0032446;protein modification by small protein conjugation;6.515225820386e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.43137141549583e-07!GO:0000245;spliceosome assembly;8.13327765324645e-07!GO:0007051;spindle organization and biogenesis;9.11993666151082e-07!GO:0016567;protein ubiquitination;1.03581366378436e-06!GO:0042981;regulation of apoptosis;1.21860346309301e-06!GO:0003724;RNA helicase activity;1.28360147331912e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.28606414296024e-06!GO:0005768;endosome;1.46475031619575e-06!GO:0043067;regulation of programmed cell death;1.4815724848532e-06!GO:0016853;isomerase activity;1.59652901107078e-06!GO:0043687;post-translational protein modification;2.04480058251092e-06!GO:0000079;regulation of cyclin-dependent protein kinase activity;2.30993854484933e-06!GO:0009165;nucleotide biosynthetic process;2.5417015934472e-06!GO:0044452;nucleolar part;2.65138994759278e-06!GO:0051168;nuclear export;2.80517422131385e-06!GO:0000786;nucleosome;2.88443449169016e-06!GO:0000151;ubiquitin ligase complex;2.96589807998608e-06!GO:0004298;threonine endopeptidase activity;3.41288483095642e-06!GO:0051427;hormone receptor binding;3.67664654620137e-06!GO:0048475;coated membrane;4.15311165772728e-06!GO:0030117;membrane coat;4.15311165772728e-06!GO:0000314;organellar small ribosomal subunit;5.33720580144193e-06!GO:0005763;mitochondrial small ribosomal subunit;5.33720580144193e-06!GO:0051170;nuclear import;5.40171027611974e-06!GO:0006302;double-strand break repair;5.43634759651886e-06!GO:0005813;centrosome;5.5126953298015e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.57713310041845e-06!GO:0006916;anti-apoptosis;6.62449864094362e-06!GO:0046483;heterocycle metabolic process;7.05627281851939e-06!GO:0006613;cotranslational protein targeting to membrane;7.05627281851939e-06!GO:0003682;chromatin binding;8.1116668437638e-06!GO:0051246;regulation of protein metabolic process;8.8120577273413e-06!GO:0035257;nuclear hormone receptor binding;8.89344694338294e-06!GO:0005788;endoplasmic reticulum lumen;1.11136222625505e-05!GO:0006082;organic acid metabolic process;1.11136222625505e-05!GO:0019752;carboxylic acid metabolic process;1.11258034795325e-05!GO:0005815;microtubule organizing center;1.12890973972387e-05!GO:0016741;transferase activity, transferring one-carbon groups;1.22041562452049e-05!GO:0008168;methyltransferase activity;1.22166554894582e-05!GO:0006414;translational elongation;1.3725215688469e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.51675062299201e-05!GO:0015399;primary active transmembrane transporter activity;1.51675062299201e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.62953914849178e-05!GO:0006626;protein targeting to mitochondrion;1.76143553044217e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.83526624313422e-05!GO:0045454;cell redox homeostasis;1.86147136157846e-05!GO:0006606;protein import into nucleus;1.9788226306218e-05!GO:0046474;glycerophospholipid biosynthetic process;2.14812671002853e-05!GO:0048523;negative regulation of cellular process;2.63647816446372e-05!GO:0043069;negative regulation of programmed cell death;2.89079804677687e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.95615465830384e-05!GO:0031324;negative regulation of cellular metabolic process;3.00777602295624e-05!GO:0003924;GTPase activity;3.50618711893458e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.97054996003658e-05!GO:0043066;negative regulation of apoptosis;4.30691755812657e-05!GO:0008186;RNA-dependent ATPase activity;4.98275674441734e-05!GO:0000776;kinetochore;5.20796405492922e-05!GO:0006839;mitochondrial transport;5.34825183868869e-05!GO:0016126;sterol biosynthetic process;5.37096039845116e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;5.37119546181795e-05!GO:0043681;protein import into mitochondrion;5.45840983809121e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.92211835164581e-05!GO:0016859;cis-trans isomerase activity;6.41398084430746e-05!GO:0043021;ribonucleoprotein binding;6.46971460207107e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;6.55412545574191e-05!GO:0030867;rough endoplasmic reticulum membrane;6.66976206023165e-05!GO:0007059;chromosome segregation;7.34671638583478e-05!GO:0051052;regulation of DNA metabolic process;7.34671638583478e-05!GO:0019867;outer membrane;7.46695406922183e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.48119321882478e-05!GO:0046489;phosphoinositide biosynthetic process;7.54110264400101e-05!GO:0006310;DNA recombination;8.03972970902214e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;8.19711172997101e-05!GO:0003684;damaged DNA binding;8.28986507019456e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;9.27936794816518e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;9.46258718076376e-05!GO:0031968;organelle outer membrane;9.92715949568982e-05!GO:0003713;transcription coactivator activity;0.00010702151739902!GO:0044440;endosomal part;0.000112924125426749!GO:0010008;endosome membrane;0.000112924125426749!GO:0007088;regulation of mitosis;0.00011490106436257!GO:0000059;protein import into nucleus, docking;0.00012815670942062!GO:0044431;Golgi apparatus part;0.00013087529268217!GO:0003690;double-stranded DNA binding;0.000135455787005953!GO:0004527;exonuclease activity;0.00013630837246461!GO:0006383;transcription from RNA polymerase III promoter;0.000138269028985476!GO:0004004;ATP-dependent RNA helicase activity;0.000138703876576355!GO:0009892;negative regulation of metabolic process;0.000142328385988233!GO:0016564;transcription repressor activity;0.000157512696547592!GO:0005770;late endosome;0.000159309452603744!GO:0043284;biopolymer biosynthetic process;0.000160910064776423!GO:0004518;nuclease activity;0.000169040302578631!GO:0006612;protein targeting to membrane;0.000169040302578631!GO:0045786;negative regulation of progression through cell cycle;0.000172931055631281!GO:0050662;coenzyme binding;0.000174929333414217!GO:0051789;response to protein stimulus;0.000175096798112622!GO:0006986;response to unfolded protein;0.000175096798112622!GO:0008610;lipid biosynthetic process;0.00018381430117459!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000185336798207605!GO:0006695;cholesterol biosynthetic process;0.000189456226769259!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00019473433455977!GO:0003678;DNA helicase activity;0.000211503007413164!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000234570442601404!GO:0009112;nucleobase metabolic process;0.000253280595585803!GO:0030880;RNA polymerase complex;0.000281011253262458!GO:0043596;nuclear replication fork;0.00029890116150024!GO:0016363;nuclear matrix;0.00029890116150024!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000305865278346551!GO:0003729;mRNA binding;0.000316195258743311!GO:0048471;perinuclear region of cytoplasm;0.00032540182910077!GO:0019843;rRNA binding;0.000348848134685461!GO:0005048;signal sequence binding;0.000366838760784681!GO:0006793;phosphorus metabolic process;0.000374751519376849!GO:0006796;phosphate metabolic process;0.000374751519376849!GO:0005741;mitochondrial outer membrane;0.000376100895376161!GO:0005798;Golgi-associated vesicle;0.000391736307946502!GO:0005791;rough endoplasmic reticulum;0.000396783215351832!GO:0031072;heat shock protein binding;0.000403859253167275!GO:0043492;ATPase activity, coupled to movement of substances;0.000468383626642826!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000481127093116312!GO:0005525;GTP binding;0.000484699418012728!GO:0005773;vacuole;0.000484846291889291!GO:0048519;negative regulation of biological process;0.000485892700704996!GO:0051920;peroxiredoxin activity;0.000489013805732245!GO:0006275;regulation of DNA replication;0.00051322128290736!GO:0005684;U2-dependent spliceosome;0.000514182845623891!GO:0033116;ER-Golgi intermediate compartment membrane;0.000526931154470609!GO:0006520;amino acid metabolic process;0.000527791536654947!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000535833681101503!GO:0046467;membrane lipid biosynthetic process;0.000547427688320193!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000559316246744401!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000564449572435582!GO:0032508;DNA duplex unwinding;0.000585855994876914!GO:0032392;DNA geometric change;0.000585855994876914!GO:0006650;glycerophospholipid metabolic process;0.000604750567863831!GO:0007006;mitochondrial membrane organization and biogenesis;0.000629117087976336!GO:0042802;identical protein binding;0.000641437726917989!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.000657506569877753!GO:0048037;cofactor binding;0.000663220241757389!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000690998892179934!GO:0000428;DNA-directed RNA polymerase complex;0.000690998892179934!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000736495517680613!GO:0006506;GPI anchor biosynthetic process;0.000759139566305159!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000761270242474548!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000761270242474548!GO:0006405;RNA export from nucleus;0.00076224940106533!GO:0005885;Arp2/3 protein complex;0.000793214221140617!GO:0007052;mitotic spindle organization and biogenesis;0.000796195319533035!GO:0015992;proton transport;0.000796195319533035!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000804794479952793!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000804794479952793!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000804794479952793!GO:0000049;tRNA binding;0.00083103057368751!GO:0000139;Golgi membrane;0.000832243242167519!GO:0051540;metal cluster binding;0.000833394467883515!GO:0051536;iron-sulfur cluster binding;0.000833394467883515!GO:0016310;phosphorylation;0.000851537885203155!GO:0000082;G1/S transition of mitotic cell cycle;0.000858438840305809!GO:0006284;base-excision repair;0.000865429402546917!GO:0001558;regulation of cell growth;0.000865905785338546!GO:0006818;hydrogen transport;0.000886823889817934!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.000951005015389627!GO:0051087;chaperone binding;0.000967179871424106!GO:0044262;cellular carbohydrate metabolic process;0.00098752561359958!GO:0008361;regulation of cell size;0.00099601899153467!GO:0030132;clathrin coat of coated pit;0.00102792852946876!GO:0006270;DNA replication initiation;0.00106709406559298!GO:0016563;transcription activator activity;0.00111235927363713!GO:0009451;RNA modification;0.00111598279558554!GO:0006611;protein export from nucleus;0.00112520151432691!GO:0007093;mitotic cell cycle checkpoint;0.00115012272679048!GO:0009116;nucleoside metabolic process;0.00118145511567286!GO:0016049;cell growth;0.00119219327288827!GO:0006118;electron transport;0.00120374952913092!GO:0031252;leading edge;0.00121385165365361!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00122540458568907!GO:0006505;GPI anchor metabolic process;0.0012889978939348!GO:0003711;transcription elongation regulator activity;0.00131176603332263!GO:0051287;NAD binding;0.00140268330414093!GO:0006352;transcription initiation;0.00140349529150301!GO:0006268;DNA unwinding during replication;0.00141429433375295!GO:0030176;integral to endoplasmic reticulum membrane;0.00145858127800146!GO:0048500;signal recognition particle;0.00154171358500498!GO:0031988;membrane-bound vesicle;0.00156385349060902!GO:0008312;7S RNA binding;0.00165187582054467!GO:0043601;nuclear replisome;0.00172602814945393!GO:0030894;replisome;0.00172602814945393!GO:0042770;DNA damage response, signal transduction;0.00175712668095005!GO:0006007;glucose catabolic process;0.00176842463572679!GO:0000323;lytic vacuole;0.0018197264389581!GO:0005764;lysosome;0.0018197264389581!GO:0065009;regulation of a molecular function;0.00182288099943487!GO:0006767;water-soluble vitamin metabolic process;0.00184604363629746!GO:0022890;inorganic cation transmembrane transporter activity;0.00196002554798932!GO:0051252;regulation of RNA metabolic process;0.00198933193631335!GO:0008180;signalosome;0.00201084408751398!GO:0005637;nuclear inner membrane;0.0020133863126072!GO:0005876;spindle microtubule;0.00201413985974701!GO:0016023;cytoplasmic membrane-bound vesicle;0.00202052671929599!GO:0003746;translation elongation factor activity;0.00203512561416903!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00203708008560387!GO:0030384;phosphoinositide metabolic process;0.00208857122432226!GO:0035258;steroid hormone receptor binding;0.00209994457447656!GO:0006497;protein amino acid lipidation;0.00216312385543515!GO:0042393;histone binding;0.00216312385543515!GO:0006595;polyamine metabolic process;0.00219959170220616!GO:0030663;COPI coated vesicle membrane;0.00225310475064103!GO:0030126;COPI vesicle coat;0.00225310475064103!GO:0006401;RNA catabolic process;0.00247050591297688!GO:0008408;3'-5' exonuclease activity;0.00253498419143134!GO:0005769;early endosome;0.00259409385221298!GO:0006733;oxidoreduction coenzyme metabolic process;0.00259409385221298!GO:0048487;beta-tubulin binding;0.00263930121700038!GO:0032561;guanyl ribonucleotide binding;0.00296174543688752!GO:0019001;guanyl nucleotide binding;0.00296174543688752!GO:0006144;purine base metabolic process;0.00298970821759708!GO:0016481;negative regulation of transcription;0.00309965542062698!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00309965542062698!GO:0000096;sulfur amino acid metabolic process;0.00310118019307678!GO:0000178;exosome (RNase complex);0.00313740529621914!GO:0003714;transcription corepressor activity;0.00315796981242395!GO:0005905;coated pit;0.00317771866954602!GO:0005758;mitochondrial intermembrane space;0.00326521990052072!GO:0016272;prefoldin complex;0.00338822011880953!GO:0006891;intra-Golgi vesicle-mediated transport;0.00352721904242685!GO:0008632;apoptotic program;0.00360312621038268!GO:0004532;exoribonuclease activity;0.0037205684975777!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0037205684975777!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00387139222793404!GO:0045047;protein targeting to ER;0.00387139222793404!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00391171656724489!GO:0000287;magnesium ion binding;0.00398590993490956!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00400295707894246!GO:0006950;response to stress;0.00407372130375728!GO:0006400;tRNA modification;0.00435957176286707!GO:0000228;nuclear chromosome;0.00468478903623792!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00468478903623792!GO:0006402;mRNA catabolic process;0.00474466335533194!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00479411440499603!GO:0015002;heme-copper terminal oxidase activity;0.00479411440499603!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00479411440499603!GO:0004129;cytochrome-c oxidase activity;0.00479411440499603!GO:0003725;double-stranded RNA binding;0.00483590802122021!GO:0006519;amino acid and derivative metabolic process;0.00484526992911977!GO:0008022;protein C-terminus binding;0.00506049905728135!GO:0048522;positive regulation of cellular process;0.00507366470320221!GO:0030137;COPI-coated vesicle;0.00567606905156074!GO:0009124;nucleoside monophosphate biosynthetic process;0.00573060524653244!GO:0009123;nucleoside monophosphate metabolic process;0.00573060524653244!GO:0008320;protein transmembrane transporter activity;0.00573471612162862!GO:0006778;porphyrin metabolic process;0.00575436225146282!GO:0033013;tetrapyrrole metabolic process;0.00575436225146282!GO:0008629;induction of apoptosis by intracellular signals;0.00577806443400311!GO:0008139;nuclear localization sequence binding;0.00588467141506582!GO:0031982;vesicle;0.00606544664068812!GO:0045792;negative regulation of cell size;0.00612747458868839!GO:0030118;clathrin coat;0.00612846136071305!GO:0004003;ATP-dependent DNA helicase activity;0.0064311592420833!GO:0031570;DNA integrity checkpoint;0.0066181457890045!GO:0030308;negative regulation of cell growth;0.00662324115849492!GO:0030658;transport vesicle membrane;0.00675927068408878!GO:0016408;C-acyltransferase activity;0.00695569963712906!GO:0004549;tRNA-specific ribonuclease activity;0.0070561059582732!GO:0051539;4 iron, 4 sulfur cluster binding;0.00709794905204507!GO:0008652;amino acid biosynthetic process;0.00721725976855185!GO:0004526;ribonuclease P activity;0.00722467257253252!GO:0042158;lipoprotein biosynthetic process;0.00732195867295866!GO:0006509;membrane protein ectodomain proteolysis;0.00781149255723227!GO:0033619;membrane protein proteolysis;0.00781149255723227!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00783111003480811!GO:0031124;mRNA 3'-end processing;0.00793081297736993!GO:0000922;spindle pole;0.00797587944981082!GO:0000725;recombinational repair;0.00808909391835935!GO:0000724;double-strand break repair via homologous recombination;0.00808909391835935!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00820637714527809!GO:0006289;nucleotide-excision repair;0.0082674840598498!GO:0009303;rRNA transcription;0.00851729628440563!GO:0031410;cytoplasmic vesicle;0.00857689022388698!GO:0005832;chaperonin-containing T-complex;0.00877884431794552!GO:0046966;thyroid hormone receptor binding;0.00905313257564781!GO:0022884;macromolecule transmembrane transporter activity;0.00909933115497898!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.00909933115497898!GO:0016125;sterol metabolic process;0.00911866881622959!GO:0043624;cellular protein complex disassembly;0.00916312178131534!GO:0016044;membrane organization and biogenesis;0.0093236792709588!GO:0009119;ribonucleoside metabolic process;0.00947083443746404!GO:0006807;nitrogen compound metabolic process;0.00953091026792307!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00975914347764848!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00989097867003279!GO:0040008;regulation of growth;0.0100539197469415!GO:0000086;G2/M transition of mitotic cell cycle;0.0101757513911644!GO:0000339;RNA cap binding;0.010331236812794!GO:0031970;organelle envelope lumen;0.0103734316359931!GO:0044438;microbody part;0.0107371710336299!GO:0044439;peroxisomal part;0.0107371710336299!GO:0043154;negative regulation of caspase activity;0.0107526971023564!GO:0016407;acetyltransferase activity;0.0108058830049167!GO:0015631;tubulin binding;0.0109489808170539!GO:0004540;ribonuclease activity;0.0110659964744511!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0111042589683159!GO:0043022;ribosome binding;0.0112340506290283!GO:0004523;ribonuclease H activity;0.0113544079349217!GO:0030660;Golgi-associated vesicle membrane;0.0114257246441697!GO:0006338;chromatin remodeling;0.0118144941437102!GO:0019899;enzyme binding;0.0118456186705058!GO:0016251;general RNA polymerase II transcription factor activity;0.0125389157307822!GO:0000175;3'-5'-exoribonuclease activity;0.0125999713601579!GO:0006740;NADPH regeneration;0.0127291217316721!GO:0006098;pentose-phosphate shunt;0.0127291217316721!GO:0032984;macromolecular complex disassembly;0.0127801687303675!GO:0009161;ribonucleoside monophosphate metabolic process;0.0129470996167609!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0129470996167609!GO:0005862;muscle thin filament tropomyosin;0.0129615183615331!GO:0007021;tubulin folding;0.0131902859644059!GO:0050790;regulation of catalytic activity;0.0135219384601044!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0135517744551795!GO:0043065;positive regulation of apoptosis;0.0135750875859319!GO:0043433;negative regulation of transcription factor activity;0.0136058695104775!GO:0032259;methylation;0.0136590558654292!GO:0006096;glycolysis;0.0136637034296057!GO:0006779;porphyrin biosynthetic process;0.0137298923491237!GO:0033014;tetrapyrrole biosynthetic process;0.0137298923491237!GO:0043414;biopolymer methylation;0.0137298923491237!GO:0030125;clathrin vesicle coat;0.0138157577817764!GO:0030665;clathrin coated vesicle membrane;0.0138157577817764!GO:0000070;mitotic sister chromatid segregation;0.0141537926822542!GO:0046982;protein heterodimerization activity;0.0144881385407099!GO:0008637;apoptotic mitochondrial changes;0.0144881385407099!GO:0009308;amine metabolic process;0.0145035639411211!GO:0007034;vacuolar transport;0.0145223875802976!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0146881905944112!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0146881905944112!GO:0045039;protein import into mitochondrial inner membrane;0.0146881905944112!GO:0005874;microtubule;0.0148898831504143!GO:0006378;mRNA polyadenylation;0.0149813033500606!GO:0044255;cellular lipid metabolic process;0.0151586821634496!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0152322741061301!GO:0030521;androgen receptor signaling pathway;0.0154330469432403!GO:0043488;regulation of mRNA stability;0.0157190029595954!GO:0043487;regulation of RNA stability;0.0157190029595954!GO:0031903;microbody membrane;0.015733952246523!GO:0005778;peroxisomal membrane;0.015733952246523!GO:0030659;cytoplasmic vesicle membrane;0.0165945669525728!GO:0043241;protein complex disassembly;0.0165945669525728!GO:0007243;protein kinase cascade;0.0168703589297652!GO:0008234;cysteine-type peptidase activity;0.017154445417401!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0172369393791088!GO:0000819;sister chromatid segregation;0.0173512032423618!GO:0005663;DNA replication factor C complex;0.0178844250055436!GO:0043068;positive regulation of programmed cell death;0.0184129623220268!GO:0006730;one-carbon compound metabolic process;0.0186529194901466!GO:0006066;alcohol metabolic process;0.0189141221225496!GO:0042168;heme metabolic process;0.0189308055071142!GO:0007017;microtubule-based process;0.0192223950347129!GO:0051053;negative regulation of DNA metabolic process;0.0193240262734539!GO:0051338;regulation of transferase activity;0.0193415223221149!GO:0008538;proteasome activator activity;0.0193677765445696!GO:0046365;monosaccharide catabolic process;0.0196480328502095!GO:0006769;nicotinamide metabolic process;0.0197303044658087!GO:0006596;polyamine biosynthetic process;0.0202461653659486!GO:0046519;sphingoid metabolic process;0.0202965395563277!GO:0006643;membrane lipid metabolic process;0.0207048952483384!GO:0006360;transcription from RNA polymerase I promoter;0.0211838722404459!GO:0048146;positive regulation of fibroblast proliferation;0.0213534155359251!GO:0050178;phenylpyruvate tautomerase activity;0.021549548155883!GO:0031123;RNA 3'-end processing;0.0215856733768265!GO:0022411;cellular component disassembly;0.0217216399648138!GO:0046983;protein dimerization activity;0.0219379974368443!GO:0050681;androgen receptor binding;0.0224254917349335!GO:0007346;regulation of progression through mitotic cell cycle;0.0226059777818062!GO:0007050;cell cycle arrest;0.022803602216674!GO:0009003;signal peptidase activity;0.0230406632205473!GO:0004659;prenyltransferase activity;0.0233136285151088!GO:0030119;AP-type membrane coat adaptor complex;0.0233159104122817!GO:0006541;glutamine metabolic process;0.0233792107005898!GO:0044454;nuclear chromosome part;0.0234466167569225!GO:0048144;fibroblast proliferation;0.0234466167569225!GO:0048145;regulation of fibroblast proliferation;0.0234466167569225!GO:0046164;alcohol catabolic process;0.0236762776821792!GO:0030508;thiol-disulfide exchange intermediate activity;0.0237522661447602!GO:0000726;non-recombinational repair;0.0238987862268878!GO:0031529;ruffle organization and biogenesis;0.0240171880637419!GO:0006672;ceramide metabolic process;0.024658085483326!GO:0043549;regulation of kinase activity;0.0247344470617681!GO:0006979;response to oxidative stress;0.0249342544851234!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0251258111737759!GO:0030134;ER to Golgi transport vesicle;0.0254046428264263!GO:0007010;cytoskeleton organization and biogenesis;0.0254328139631996!GO:0005732;small nucleolar ribonucleoprotein complex;0.0255414342665531!GO:0006220;pyrimidine nucleotide metabolic process;0.02561246012364!GO:0001522;pseudouridine synthesis;0.02561246012364!GO:0016197;endosome transport;0.0257870819783862!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0257870819783862!GO:0043189;H4/H2A histone acetyltransferase complex;0.0258784227856078!GO:0016788;hydrolase activity, acting on ester bonds;0.0260255421976486!GO:0031902;late endosome membrane;0.0260480657685609!GO:0046112;nucleobase biosynthetic process;0.026335969493973!GO:0000077;DNA damage checkpoint;0.0267251135775136!GO:0003923;GPI-anchor transamidase activity;0.0267251135775136!GO:0016255;attachment of GPI anchor to protein;0.0267251135775136!GO:0042765;GPI-anchor transamidase complex;0.0267251135775136!GO:0005669;transcription factor TFIID complex;0.0267651315783582!GO:0008536;Ran GTPase binding;0.0267658187313324!GO:0008250;oligosaccharyl transferase complex;0.0267978757615517!GO:0008299;isoprenoid biosynthetic process;0.0270296022721661!GO:0017166;vinculin binding;0.0273920740282962!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0276825047270357!GO:0000030;mannosyltransferase activity;0.0277408537483545!GO:0004576;oligosaccharyl transferase activity;0.0280244506268925!GO:0004860;protein kinase inhibitor activity;0.0289123113203232!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0290086297839507!GO:0010257;NADH dehydrogenase complex assembly;0.0290086297839507!GO:0033108;mitochondrial respiratory chain complex assembly;0.0290086297839507!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0290086297839507!GO:0046128;purine ribonucleoside metabolic process;0.0290354275278587!GO:0042278;purine nucleoside metabolic process;0.0290354275278587!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0290601866716065!GO:0006354;RNA elongation;0.0292542681190512!GO:0005869;dynactin complex;0.0296499172848693!GO:0030131;clathrin adaptor complex;0.0298535763255022!GO:0006376;mRNA splice site selection;0.0303563650344484!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0303563650344484!GO:0019320;hexose catabolic process;0.0306367064165513!GO:0045926;negative regulation of growth;0.0307815934223148!GO:0030133;transport vesicle;0.0308636413203276!GO:0030127;COPII vesicle coat;0.031258958374054!GO:0012507;ER to Golgi transport vesicle membrane;0.031258958374054!GO:0000792;heterochromatin;0.0314146815880545!GO:0003702;RNA polymerase II transcription factor activity;0.031641726899795!GO:0006644;phospholipid metabolic process;0.031641726899795!GO:0005777;peroxisome;0.031641726899795!GO:0042579;microbody;0.031641726899795!GO:0005996;monosaccharide metabolic process;0.0317064615482996!GO:0000152;nuclear ubiquitin ligase complex;0.0318157230434706!GO:0004861;cyclin-dependent protein kinase inhibitor activity;0.0320610896654525!GO:0050794;regulation of cellular process;0.0326454690854035!GO:0045045;secretory pathway;0.0326616525851179!GO:0006213;pyrimidine nucleoside metabolic process;0.0329487543345775!GO:0005658;alpha DNA polymerase:primase complex;0.0332129649607163!GO:0044433;cytoplasmic vesicle part;0.0335785205612016!GO:0051059;NF-kappaB binding;0.0338724436972719!GO:0006417;regulation of translation;0.0339892020362182!GO:0006739;NADP metabolic process;0.0343447967834138!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0348520472670683!GO:0016790;thiolester hydrolase activity;0.0349555358139189!GO:0035267;NuA4 histone acetyltransferase complex;0.0352438375607642!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0353361624641715!GO:0005784;translocon complex;0.0358387765989943!GO:0019318;hexose metabolic process;0.0359571432631967!GO:0019783;small conjugating protein-specific protease activity;0.0363196376837217!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0363875128099963!GO:0006406;mRNA export from nucleus;0.0366817090048569!GO:0009066;aspartate family amino acid metabolic process;0.0368187290788894!GO:0031577;spindle checkpoint;0.0368649207529681!GO:0006518;peptide metabolic process;0.0369986437824002!GO:0015036;disulfide oxidoreductase activity;0.0377076850351806!GO:0019362;pyridine nucleotide metabolic process;0.0381397254150206!GO:0045859;regulation of protein kinase activity;0.0381397254150206!GO:0016417;S-acyltransferase activity;0.0395555699653354!GO:0012506;vesicle membrane;0.0398481935362738!GO:0000781;chromosome, telomeric region;0.0401131245608417!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0404472488586493!GO:0008276;protein methyltransferase activity;0.0404472488586493!GO:0032200;telomere organization and biogenesis;0.0408260685568159!GO:0000723;telomere maintenance;0.0408260685568159!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0408975831319731!GO:0051716;cellular response to stimulus;0.0410723946150826!GO:0019206;nucleoside kinase activity;0.0410723946150826!GO:0004536;deoxyribonuclease activity;0.0412172074906186!GO:0046822;regulation of nucleocytoplasmic transport;0.0414741047776734!GO:0008156;negative regulation of DNA replication;0.0414741047776734!GO:0030677;ribonuclease P complex;0.0420016879968577!GO:0006006;glucose metabolic process;0.0425448843797065!GO:0008092;cytoskeletal protein binding;0.0425448843797065!GO:0003756;protein disulfide isomerase activity;0.0425750556908225!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0425750556908225!GO:0005774;vacuolar membrane;0.0425750556908225!GO:0009396;folic acid and derivative biosynthetic process;0.0426906292642343!GO:0004448;isocitrate dehydrogenase activity;0.0426906292642343!GO:0004843;ubiquitin-specific protease activity;0.0427016991893008!GO:0009225;nucleotide-sugar metabolic process;0.0427476824048924!GO:0005971;ribonucleoside-diphosphate reductase complex;0.0428627339107765!GO:0042364;water-soluble vitamin biosynthetic process;0.0433825059208658!GO:0030032;lamellipodium biogenesis;0.0435636128584387!GO:0042026;protein refolding;0.0435780336379805!GO:0006783;heme biosynthetic process;0.0436179358622792!GO:0031371;ubiquitin conjugating enzyme complex;0.0438067744919301!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0438067744919301!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0439483609173355!GO:0030503;regulation of cell redox homeostasis;0.0441255118931872!GO:0007041;lysosomal transport;0.0443136979487599!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0443798447725116!GO:0008426;protein kinase C inhibitor activity;0.0443798447725116!GO:0031625;ubiquitin protein ligase binding;0.0443798447725116!GO:0030911;TPR domain binding;0.0454042593096796!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.045471948655237!GO:0008203;cholesterol metabolic process;0.0456414527229927!GO:0031406;carboxylic acid binding;0.046125955419391!GO:0009067;aspartate family amino acid biosynthetic process;0.0465005449862836!GO:0042769;DNA damage response, detection of DNA damage;0.0467419965630426!GO:0050811;GABA receptor binding;0.0472093077857319!GO:0051098;regulation of binding;0.048078318836772!GO:0017056;structural constituent of nuclear pore;0.0482159905909794!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0482916742030181!GO:0030027;lamellipodium;0.0483697675529251!GO:0016835;carbon-oxygen lyase activity;0.0483697675529251!GO:0022406;membrane docking;0.0484875626502589!GO:0048278;vesicle docking;0.0484875626502589!GO:0009081;branched chain family amino acid metabolic process;0.0486587383910685!GO:0016584;nucleosome positioning;0.0486945374504982!GO:0030433;ER-associated protein catabolic process;0.0490516125575746!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0490516125575746!GO:0007040;lysosome organization and biogenesis;0.0493672938188799!GO:0006308;DNA catabolic process;0.0494323762267517!GO:0016453;C-acetyltransferase activity;0.0496345751524737 | |||
|sample_id=11900 | |sample_id=11900 | ||
|sample_note= | |sample_note= | ||
Line 76: | Line 99: | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=FOXQ1:1.70314915325;E2F1..5:1.66299094638;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.63948804651;HES1:1.56356477293;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.53126067273;ESRRA:1.50539882127;NR5A1,2:1.35290148151;HIF1A:1.26893769415;ELK1,4_GABP{A,B1}:1.25633456593;PPARG:1.20042727723;FOXM1:1.03675498638;YY1:0.972858327261;NKX3-1:0.937182072823;NRF1:0.929761483507;PAX1,9:0.880568344106;MYB:0.765614555903;NFY{A,B,C}:0.744969090772;ZNF143:0.721784967346;HNF4A_NR2F1,2:0.68672587967;bHLH_family:0.659689915977;FOXD3:0.656328827379;NKX3-2:0.633379533568;VSX1,2:0.630330868835;FOXN1:0.622543294486;POU1F1:0.622303247161;GCM1,2:0.60873637823;TFDP1:0.581879894525;SNAI1..3:0.578936814548;HOXA9_MEIS1:0.551562057063;HOX{A6,A7,B6,B7}:0.548186627343;PAX5:0.519547201298;TEAD1:0.497210729354;PAX8:0.446008171913;TEF:0.425364816936;ZEB1:0.423712746462;IKZF2:0.410799993745;NR6A1:0.401820331102;EP300:0.37842648442;GFI1:0.368626673092;IRF7:0.342103831552;ZNF148:0.341780883251;MYOD1:0.316811658611;UFEwm:0.295454351492;PITX1..3:0.283677561525;TBX4,5:0.271291185744;IKZF1:0.269699906731;CREB1:0.266603901115;BREu{core}:0.237105780333;HOX{A5,B5}:0.191235285871;NFE2L1:0.189031978249;TP53:0.188181787055;GZF1:0.1843838857;CUX2:0.177968364677;FOX{F1,F2,J1}:0.175895472428;MYBL2:0.1409067932;SOX{8,9,10}:0.127783222748;LEF1_TCF7_TCF7L1,2:0.125075443584;ARID5B:0.122923581524;HSF1,2:0.109389758177;MTF1:0.102489604139;LHX3,4:0.0955531060958;PDX1:0.0773662873933;HAND1,2:0.0531393394399;AHR_ARNT_ARNT2:0.0333407663383;ZBTB16:0.0326490999313;HNF1A:0.0150173745874;NFE2:0.00658397532707;ALX4:0.00620061131982;FOX{I1,J2}:0.00332483661509;NR1H4:0.00283465308369;RXR{A,B,G}:-0.0142489139866;PAX2:-0.0175041009898;PRRX1,2:-0.021308035711;GLI1..3:-0.0223150215819;HLF:-0.0249488550272;EN1,2:-0.0264022031429;OCT4_SOX2{dimer}:-0.0356179401656;PAX3,7:-0.0393543287154;NFE2L2:-0.0430288000567;BACH2:-0.0530283665822;POU3F1..4:-0.0547924810745;PAX4:-0.0551694830593;NKX2-2,8:-0.0568236803203;ATF5_CREB3:-0.0736239815588;ADNP_IRX_SIX_ZHX:-0.076485392698;ONECUT1,2:-0.0787238176146;STAT5{A,B}:-0.082918946355;PBX1:-0.083266954683;DBP:-0.0842011363457;FOXL1:-0.0855438103494;RORA:-0.0907382378939;FOS_FOS{B,L1}_JUN{B,D}:-0.101710687665;CRX:-0.131116111791;ATF4:-0.134706151864;ZNF384:-0.135776356345;RFX2..5_RFXANK_RFXAP:-0.13785401562;HOX{A4,D4}:-0.13892095906;KLF4:-0.146720881093;GTF2A1,2:-0.166760214945;NR3C1:-0.178309370657;CDX1,2,4:-0.182138506533;GFI1B:-0.20405807913;POU2F1..3:-0.210384137041;MEF2{A,B,C,D}:-0.212582534352;BPTF:-0.214298079958;NKX6-1,2:-0.227533672106;NFIL3:-0.229759033861;TFCP2:-0.237876428951;CEBPA,B_DDIT3:-0.248133462516;ZNF423:-0.249606921744;TLX1..3_NFIC{dimer}:-0.269646870944;CDC5L:-0.270710456523;HBP1_HMGB_SSRP1_UBTF:-0.279364282801;T:-0.291276899341;TBP:-0.307361158764;POU6F1:-0.313380206997;PAX6:-0.320944723377;ELF1,2,4:-0.348708039185;LMO2:-0.349054452482;ZBTB6:-0.349717028285;AIRE:-0.349880438524;FOSL2:-0.371805101659;ATF6:-0.372739941668;NFKB1_REL_RELA:-0.380408195352;ZFP161:-0.382687397709;EBF1:-0.383457511261;HIC1:-0.403768016387;NANOG:-0.409693325137;IRF1,2:-0.420106029843;TFAP2{A,C}:-0.421785528289;SREBF1,2:-0.426729105721;ESR1:-0.434972082498;ALX1:-0.435065593336;HMGA1,2:-0.456918088621;RBPJ:-0.481170577116;RFX1:-0.493696854708;FOXA2:-0.494075048907;SOX2:-0.520935463368;AR:-0.524672240944;GATA6:-0.530890484402;FOXP1:-0.534165341961;SPIB:-0.534930497308;TFAP2B:-0.561994194219;GTF2I:-0.572915013308;STAT2,4,6:-0.581592031375;JUN:-0.613411899111;REST:-0.622173491705;FOXP3:-0.631484657163;SOX5:-0.634991435437;NKX2-3_NKX2-5:-0.635942913053;NFIX:-0.641537513397;SPI1:-0.646329019697;NKX2-1,4:-0.650254749755;MED-1{core}:-0.653861624781;RUNX1..3:-0.658431935727;SOX17:-0.661341381952;MAFB:-0.663749732376;EVI1:-0.664719980143;POU5F1:-0.670408823747;MTE{core}:-0.677647508544;SP1:-0.67788460193;ZIC1..3:-0.687729242229;NFATC1..3:-0.692062085183;EGR1..3:-0.712497701561;DMAP1_NCOR{1,2}_SMARC:-0.724211635845;GATA4:-0.739687123489;ETS1,2:-0.763564170108;NHLH1,2:-0.772096237179;TAL1_TCF{3,4,12}:-0.828942518238;TFAP4:-0.849096158617;ZNF238:-0.879690095268;MYFfamily:-0.891486144409;SRF:-0.910300168499;TOPORS:-0.932080026499;STAT1,3:-0.939524107005;XCPE1{core}:-0.965272804757;RREB1:-0.975813486733;ATF2:-0.993627520692;RXRA_VDR{dimer}:-0.994928389622;FOX{D1,D2}:-1.01057165054;MAZ:-1.04310537278;PRDM1:-1.04404388926;XBP1:-1.09787509712;MZF1:-1.19940040136;FOXO1,3,4:-1.21342441273;HMX1:-1.21380401205;TGIF1:-1.25201968912;SMAD1..7,9:-1.26078383542;PATZ1:-1.28026323295;TLX2:-1.39225039637;NANOG{mouse}:-1.6581633759;SPZ1:-1.88824163484 | |top_motifs=FOXQ1:1.70314915325;E2F1..5:1.66299094638;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.63948804651;HES1:1.56356477293;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.53126067273;ESRRA:1.50539882127;NR5A1,2:1.35290148151;HIF1A:1.26893769415;ELK1,4_GABP{A,B1}:1.25633456593;PPARG:1.20042727723;FOXM1:1.03675498638;YY1:0.972858327261;NKX3-1:0.937182072823;NRF1:0.929761483507;PAX1,9:0.880568344106;MYB:0.765614555903;NFY{A,B,C}:0.744969090772;ZNF143:0.721784967346;HNF4A_NR2F1,2:0.68672587967;bHLH_family:0.659689915977;FOXD3:0.656328827379;NKX3-2:0.633379533568;VSX1,2:0.630330868835;FOXN1:0.622543294486;POU1F1:0.622303247161;GCM1,2:0.60873637823;TFDP1:0.581879894525;SNAI1..3:0.578936814548;HOXA9_MEIS1:0.551562057063;HOX{A6,A7,B6,B7}:0.548186627343;PAX5:0.519547201298;TEAD1:0.497210729354;PAX8:0.446008171913;TEF:0.425364816936;ZEB1:0.423712746462;IKZF2:0.410799993745;NR6A1:0.401820331102;EP300:0.37842648442;GFI1:0.368626673092;IRF7:0.342103831552;ZNF148:0.341780883251;MYOD1:0.316811658611;UFEwm:0.295454351492;PITX1..3:0.283677561525;TBX4,5:0.271291185744;IKZF1:0.269699906731;CREB1:0.266603901115;BREu{core}:0.237105780333;HOX{A5,B5}:0.191235285871;NFE2L1:0.189031978249;TP53:0.188181787055;GZF1:0.1843838857;CUX2:0.177968364677;FOX{F1,F2,J1}:0.175895472428;MYBL2:0.1409067932;SOX{8,9,10}:0.127783222748;LEF1_TCF7_TCF7L1,2:0.125075443584;ARID5B:0.122923581524;HSF1,2:0.109389758177;MTF1:0.102489604139;LHX3,4:0.0955531060958;PDX1:0.0773662873933;HAND1,2:0.0531393394399;AHR_ARNT_ARNT2:0.0333407663383;ZBTB16:0.0326490999313;HNF1A:0.0150173745874;NFE2:0.00658397532707;ALX4:0.00620061131982;FOX{I1,J2}:0.00332483661509;NR1H4:0.00283465308369;RXR{A,B,G}:-0.0142489139866;PAX2:-0.0175041009898;PRRX1,2:-0.021308035711;GLI1..3:-0.0223150215819;HLF:-0.0249488550272;EN1,2:-0.0264022031429;OCT4_SOX2{dimer}:-0.0356179401656;PAX3,7:-0.0393543287154;NFE2L2:-0.0430288000567;BACH2:-0.0530283665822;POU3F1..4:-0.0547924810745;PAX4:-0.0551694830593;NKX2-2,8:-0.0568236803203;ATF5_CREB3:-0.0736239815588;ADNP_IRX_SIX_ZHX:-0.076485392698;ONECUT1,2:-0.0787238176146;STAT5{A,B}:-0.082918946355;PBX1:-0.083266954683;DBP:-0.0842011363457;FOXL1:-0.0855438103494;RORA:-0.0907382378939;FOS_FOS{B,L1}_JUN{B,D}:-0.101710687665;CRX:-0.131116111791;ATF4:-0.134706151864;ZNF384:-0.135776356345;RFX2..5_RFXANK_RFXAP:-0.13785401562;HOX{A4,D4}:-0.13892095906;KLF4:-0.146720881093;GTF2A1,2:-0.166760214945;NR3C1:-0.178309370657;CDX1,2,4:-0.182138506533;GFI1B:-0.20405807913;POU2F1..3:-0.210384137041;MEF2{A,B,C,D}:-0.212582534352;BPTF:-0.214298079958;NKX6-1,2:-0.227533672106;NFIL3:-0.229759033861;TFCP2:-0.237876428951;CEBPA,B_DDIT3:-0.248133462516;ZNF423:-0.249606921744;TLX1..3_NFIC{dimer}:-0.269646870944;CDC5L:-0.270710456523;HBP1_HMGB_SSRP1_UBTF:-0.279364282801;T:-0.291276899341;TBP:-0.307361158764;POU6F1:-0.313380206997;PAX6:-0.320944723377;ELF1,2,4:-0.348708039185;LMO2:-0.349054452482;ZBTB6:-0.349717028285;AIRE:-0.349880438524;FOSL2:-0.371805101659;ATF6:-0.372739941668;NFKB1_REL_RELA:-0.380408195352;ZFP161:-0.382687397709;EBF1:-0.383457511261;HIC1:-0.403768016387;NANOG:-0.409693325137;IRF1,2:-0.420106029843;TFAP2{A,C}:-0.421785528289;SREBF1,2:-0.426729105721;ESR1:-0.434972082498;ALX1:-0.435065593336;HMGA1,2:-0.456918088621;RBPJ:-0.481170577116;RFX1:-0.493696854708;FOXA2:-0.494075048907;SOX2:-0.520935463368;AR:-0.524672240944;GATA6:-0.530890484402;FOXP1:-0.534165341961;SPIB:-0.534930497308;TFAP2B:-0.561994194219;GTF2I:-0.572915013308;STAT2,4,6:-0.581592031375;JUN:-0.613411899111;REST:-0.622173491705;FOXP3:-0.631484657163;SOX5:-0.634991435437;NKX2-3_NKX2-5:-0.635942913053;NFIX:-0.641537513397;SPI1:-0.646329019697;NKX2-1,4:-0.650254749755;MED-1{core}:-0.653861624781;RUNX1..3:-0.658431935727;SOX17:-0.661341381952;MAFB:-0.663749732376;EVI1:-0.664719980143;POU5F1:-0.670408823747;MTE{core}:-0.677647508544;SP1:-0.67788460193;ZIC1..3:-0.687729242229;NFATC1..3:-0.692062085183;EGR1..3:-0.712497701561;DMAP1_NCOR{1,2}_SMARC:-0.724211635845;GATA4:-0.739687123489;ETS1,2:-0.763564170108;NHLH1,2:-0.772096237179;TAL1_TCF{3,4,12}:-0.828942518238;TFAP4:-0.849096158617;ZNF238:-0.879690095268;MYFfamily:-0.891486144409;SRF:-0.910300168499;TOPORS:-0.932080026499;STAT1,3:-0.939524107005;XCPE1{core}:-0.965272804757;RREB1:-0.975813486733;ATF2:-0.993627520692;RXRA_VDR{dimer}:-0.994928389622;FOX{D1,D2}:-1.01057165054;MAZ:-1.04310537278;PRDM1:-1.04404388926;XBP1:-1.09787509712;MZF1:-1.19940040136;FOXO1,3,4:-1.21342441273;HMX1:-1.21380401205;TGIF1:-1.25201968912;SMAD1..7,9:-1.26078383542;PATZ1:-1.28026323295;TLX2:-1.39225039637;NANOG{mouse}:-1.6581633759;SPZ1:-1.88824163484 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11900-125F1;search_select_hide=table117:FF:11900-125F1 | |||
}} | }} |
Latest revision as of 18:27, 4 June 2020
Name: | Hep-2 cells mock treated, biol_rep3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13501 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13501
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13501
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0831 |
10 | 10 | 0.112 |
100 | 100 | 0.0347 |
101 | 101 | 0.241 |
102 | 102 | 0.935 |
103 | 103 | 0.92 |
104 | 104 | 0.843 |
105 | 105 | 0.171 |
106 | 106 | 0.00553 |
107 | 107 | 0.0956 |
108 | 108 | 0.538 |
109 | 109 | 0.00147 |
11 | 11 | 0.822 |
110 | 110 | 0.652 |
111 | 111 | 0.465 |
112 | 112 | 0.313 |
113 | 113 | 0.00397 |
114 | 114 | 0.429 |
115 | 115 | 0.878 |
116 | 116 | 0.306 |
117 | 117 | 0.241 |
118 | 118 | 0.181 |
119 | 119 | 0.871 |
12 | 12 | 0.646 |
120 | 120 | 0.0279 |
121 | 121 | 0.691 |
122 | 122 | 0.162 |
123 | 123 | 0.402 |
124 | 124 | 0.807 |
125 | 125 | 0.846 |
126 | 126 | 0.953 |
127 | 127 | 0.156 |
128 | 128 | 7.33005e-4 |
129 | 129 | 0.321 |
13 | 13 | 2.25697e-4 |
130 | 130 | 0.5 |
131 | 131 | 0.203 |
132 | 132 | 0.463 |
133 | 133 | 0.137 |
134 | 134 | 0.966 |
135 | 135 | 0.138 |
136 | 136 | 0.00191 |
137 | 137 | 0.476 |
138 | 138 | 0.702 |
139 | 139 | 0.196 |
14 | 14 | 0.365 |
140 | 140 | 0.321 |
141 | 141 | 0.338 |
142 | 142 | 0.511 |
143 | 143 | 0.202 |
144 | 144 | 0.535 |
145 | 145 | 0.125 |
146 | 146 | 0.726 |
147 | 147 | 0.902 |
148 | 148 | 0.408 |
149 | 149 | 0.573 |
15 | 15 | 0.63 |
150 | 150 | 0.81 |
151 | 151 | 0.58 |
152 | 152 | 0.232 |
153 | 153 | 0.492 |
154 | 154 | 0.468 |
155 | 155 | 0.288 |
156 | 156 | 0.048 |
157 | 157 | 0.148 |
158 | 158 | 0.237 |
159 | 159 | 0.263 |
16 | 16 | 0.849 |
160 | 160 | 0.565 |
161 | 161 | 0.507 |
162 | 162 | 0.851 |
163 | 163 | 0.293 |
164 | 164 | 0.0527 |
165 | 165 | 0.751 |
166 | 166 | 0.0151 |
167 | 167 | 0.165 |
168 | 168 | 0.374 |
169 | 169 | 0.568 |
17 | 17 | 0.7 |
18 | 18 | 0.195 |
19 | 19 | 0.607 |
2 | 2 | 0.402 |
20 | 20 | 0.147 |
21 | 21 | 0.34 |
22 | 22 | 0.785 |
23 | 23 | 0.00273 |
24 | 24 | 0.522 |
25 | 25 | 0.15 |
26 | 26 | 0.738 |
27 | 27 | 0.656 |
28 | 28 | 0.798 |
29 | 29 | 0.0188 |
3 | 3 | 0.475 |
30 | 30 | 0.373 |
31 | 31 | 0.554 |
32 | 32 | 0.0441 |
33 | 33 | 0.22 |
34 | 34 | 0.157 |
35 | 35 | 0.939 |
36 | 36 | 0.169 |
37 | 37 | 0.699 |
38 | 38 | 0.723 |
39 | 39 | 0.991 |
4 | 4 | 0.443 |
40 | 40 | 0.0134 |
41 | 41 | 0.201 |
42 | 42 | 0.882 |
43 | 43 | 0.32 |
44 | 44 | 0.0743 |
45 | 45 | 0.161 |
46 | 46 | 0.539 |
47 | 47 | 0.448 |
48 | 48 | 0.495 |
49 | 49 | 0.254 |
5 | 5 | 0.36 |
50 | 50 | 0.806 |
51 | 51 | 0.619 |
52 | 52 | 0.356 |
53 | 53 | 0.183 |
54 | 54 | 0.408 |
55 | 55 | 0.0207 |
56 | 56 | 0.82 |
57 | 57 | 0.522 |
58 | 58 | 0.994 |
59 | 59 | 0.711 |
6 | 6 | 0.795 |
60 | 60 | 0.385 |
61 | 61 | 0.0547 |
62 | 62 | 0.902 |
63 | 63 | 0.538 |
64 | 64 | 0.738 |
65 | 65 | 0.297 |
66 | 66 | 0.31 |
67 | 67 | 0.814 |
68 | 68 | 0.529 |
69 | 69 | 0.542 |
7 | 7 | 0.016 |
70 | 70 | 0.207 |
71 | 71 | 0.047 |
72 | 72 | 0.645 |
73 | 73 | 0.87 |
74 | 74 | 0.143 |
75 | 75 | 0.179 |
76 | 76 | 0.258 |
77 | 77 | 0.713 |
78 | 78 | 0.248 |
79 | 79 | 0.642 |
8 | 8 | 0.107 |
80 | 80 | 0.0696 |
81 | 81 | 0.395 |
82 | 82 | 0.0472 |
83 | 83 | 0.822 |
84 | 84 | 0.184 |
85 | 85 | 0.0228 |
86 | 86 | 0.741 |
87 | 87 | 0.016 |
88 | 88 | 0.707 |
89 | 89 | 0.976 |
9 | 9 | 0.476 |
90 | 90 | 0.0606 |
91 | 91 | 0.0125 |
92 | 92 | 0.0599 |
93 | 93 | 0.197 |
94 | 94 | 0.755 |
95 | 95 | 0.0493 |
96 | 96 | 0.638 |
97 | 97 | 0.889 |
98 | 98 | 0.725 |
99 | 99 | 0.565 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13501
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001737 (larynx)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000072 (segment of respiratory tract)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
0001557 (upper respiratory tract)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0104978 (HEp-2 cell sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011132 (human Hep-2 cells mock treated sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)