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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005013
|DRA_sample_Accession=CAGE@SAMD00005013
|accession_numbers=CAGE;DRX008543;DRR009415;DRZ000840;DRZ002225
|accession_numbers=CAGE;DRX008543;DRR009415;DRZ000840;DRZ002225;DRZ012190;DRZ013575
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453,CL:0000840,CL:0001014,CL:0001016
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg38.nobarcode.ctss.bed.gz
|id=FF:11904-125F5
|id=FF:11904-125F5
|is_a=EFO:0002091;;FF:0011135
|is_a=EFO:0002091;;FF:0011135
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|library_id=CNhs13537
|library_id=CNhs13537
|library_id_phase_based=2:CNhs13537
|library_id_phase_based=2:CNhs13537
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11904
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11904
|name=immature langerhans cells, donor1
|name=immature langerhans cells, donor1
|namespace=
|namespace=
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|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 92: Line 101:
|top_motifs=NFKB1_REL_RELA:2.6578241477;CREB1:2.54825868468;ATF5_CREB3:2.50487662999;HSF1,2:2.32388151032;FOXN1:2.29992511255;JUN:2.09523632546;ATF4:2.09466218661;NANOG{mouse}:2.01863221224;TLX2:1.98585492075;SPI1:1.62589858563;PAX2:1.56050380238;FOXP3:1.54094506879;FOSL2:1.48397540523;SPIB:1.48350992749;RUNX1..3:1.42662025206;DMAP1_NCOR{1,2}_SMARC:1.28984636052;TGIF1:1.28149331303;ATF2:1.26196255894;RFX2..5_RFXANK_RFXAP:1.17325116111;HIF1A:1.17160565276;GLI1..3:1.05569693326;FOS_FOS{B,L1}_JUN{B,D}:1.05114850891;HMX1:1.03568823659;NFE2L1:0.957370172476;BACH2:0.953163738115;VSX1,2:0.928800602254;TBX4,5:0.907907566217;ETS1,2:0.906882294936;POU5F1:0.881820314628;SREBF1,2:0.880819468848;NKX2-2,8:0.830751384138;FOX{F1,F2,J1}:0.786914184457;MAFB:0.754257232517;ATF6:0.721772835661;ELF1,2,4:0.693047578288;NFIL3:0.679423133682;STAT1,3:0.677248041132;TBP:0.66335070091;FOXQ1:0.601783191253;ESRRA:0.583431032283;ZEB1:0.557789534686;CDX1,2,4:0.542741970724;IRF1,2:0.526105547827;EP300:0.525080993656;AHR_ARNT_ARNT2:0.503909137782;NFATC1..3:0.500457674684;BPTF:0.496973451642;NFE2:0.479796635506;EGR1..3:0.420997619836;NKX6-1,2:0.419128439715;FOX{D1,D2}:0.412752530643;PAX6:0.410468000128;POU1F1:0.368130530132;MYB:0.367421847657;EN1,2:0.330742930556;HOXA9_MEIS1:0.292465023893;ZBTB16:0.284826477479;NFE2L2:0.28188244534;SNAI1..3:0.26620807142;NANOG:0.252809582937;POU2F1..3:0.241067549419;PAX3,7:0.234714057725;CUX2:0.193024024472;NKX3-1:0.176231802048;STAT5{A,B}:0.157839394287;IRF7:0.15541171206;FOXA2:0.0925103932118;CEBPA,B_DDIT3:0.0922297293742;SOX2:0.0863550623262;RORA:0.083388973047;POU3F1..4:0.0736517033435;MED-1{core}:0.0623145230109;ALX1:0.043908559981;E2F1..5:0.0411399443718;HBP1_HMGB_SSRP1_UBTF:0.0225513458728;PAX8:0.000990719537141;SOX17:-0.0349581655987;PPARG:-0.0711938354221;SMAD1..7,9:-0.0771757788933;TFDP1:-0.091122322026;STAT2,4,6:-0.0952160930266;AIRE:-0.102403626266;ZBTB6:-0.130116919932;HES1:-0.143850916482;SPZ1:-0.212588079711;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.214230617139;MYFfamily:-0.217914528193;TFAP2{A,C}:-0.238366694187;FOXP1:-0.25351030248;MYOD1:-0.268625670175;MEF2{A,B,C,D}:-0.273242536004;ALX4:-0.274275517669;ZFP161:-0.282367743042;NKX2-1,4:-0.289785915455;NKX3-2:-0.29338688297;HNF4A_NR2F1,2:-0.303007332871;OCT4_SOX2{dimer}:-0.320211067503;ELK1,4_GABP{A,B1}:-0.339850602097;HOX{A5,B5}:-0.340119907573;RFX1:-0.350401118323;NFY{A,B,C}:-0.354514297578;XBP1:-0.36973807903;SRF:-0.387427002247;TP53:-0.388767712538;PAX1,9:-0.398051062461;GCM1,2:-0.400043312334;CDC5L:-0.404183861838;PAX4:-0.406724137985;BREu{core}:-0.408354460699;IKZF2:-0.414236476569;SP1:-0.433335090376;NFIX:-0.439150915752;LMO2:-0.474562838532;HLF:-0.49602763214;CRX:-0.496040386498;HNF1A:-0.506588154445;MZF1:-0.518371126688;HMGA1,2:-0.520086374859;MAZ:-0.540361012513;GATA6:-0.545040155276;LHX3,4:-0.553616358641;HAND1,2:-0.556294293729;PAX5:-0.5664352791;ZIC1..3:-0.592773197822;TAL1_TCF{3,4,12}:-0.610838869047;NKX2-3_NKX2-5:-0.62829215833;PITX1..3:-0.645536679012;MYBL2:-0.668574336263;NR3C1:-0.680800763547;ESR1:-0.724096383956;GFI1:-0.727612577823;ZNF148:-0.745758638031;NHLH1,2:-0.756798564864;RXRA_VDR{dimer}:-0.777936977711;EVI1:-0.780324085172;PRRX1,2:-0.782259809346;TFCP2:-0.827193523834;MTE{core}:-0.834971558643;SOX5:-0.838787305812;YY1:-0.862232991649;FOXO1,3,4:-0.865770917329;NR5A1,2:-0.902804382597;GTF2A1,2:-0.925340665651;TEAD1:-0.944622860919;SOX{8,9,10}:-0.951682054418;NR6A1:-0.953451477404;HIC1:-1.01762574642;AR:-1.02806621292;GFI1B:-1.08497279946;ONECUT1,2:-1.12095505684;NRF1:-1.12558879501;IKZF1:-1.13115719786;ZNF143:-1.13403556135;ARID5B:-1.13898846103;REST:-1.15312498726;POU6F1:-1.15372129536;GTF2I:-1.18846606837;TOPORS:-1.19300085696;FOXM1:-1.20902400059;PRDM1:-1.21187836784;HOX{A4,D4}:-1.2275389645;UFEwm:-1.2282311081;TLX1..3_NFIC{dimer}:-1.24284526586;FOX{I1,J2}:-1.24883473574;XCPE1{core}:-1.27371797816;EBF1:-1.27380113266;TFAP2B:-1.28251956042;MTF1:-1.28801698167;KLF4:-1.30081638555;ADNP_IRX_SIX_ZHX:-1.33019038329;FOXL1:-1.34117657551;PATZ1:-1.34589801124;TEF:-1.3730466976;GATA4:-1.39096656892;bHLH_family:-1.39663884457;RBPJ:-1.41009820565;RREB1:-1.44938251406;HOX{A6,A7,B6,B7}:-1.47782745819;ZNF384:-1.47897006037;NR1H4:-1.48868316554;FOXD3:-1.50263761374;LEF1_TCF7_TCF7L1,2:-1.52212644074;ZNF238:-1.56073258436;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.5630918707;GZF1:-1.68254241863;T:-1.74370365162;TFAP4:-1.77009894657;PBX1:-1.82039993493;PDX1:-1.89239819597;DBP:-1.98100329815;ZNF423:-2.22959281669;RXR{A,B,G}:-2.82674107891
|top_motifs=NFKB1_REL_RELA:2.6578241477;CREB1:2.54825868468;ATF5_CREB3:2.50487662999;HSF1,2:2.32388151032;FOXN1:2.29992511255;JUN:2.09523632546;ATF4:2.09466218661;NANOG{mouse}:2.01863221224;TLX2:1.98585492075;SPI1:1.62589858563;PAX2:1.56050380238;FOXP3:1.54094506879;FOSL2:1.48397540523;SPIB:1.48350992749;RUNX1..3:1.42662025206;DMAP1_NCOR{1,2}_SMARC:1.28984636052;TGIF1:1.28149331303;ATF2:1.26196255894;RFX2..5_RFXANK_RFXAP:1.17325116111;HIF1A:1.17160565276;GLI1..3:1.05569693326;FOS_FOS{B,L1}_JUN{B,D}:1.05114850891;HMX1:1.03568823659;NFE2L1:0.957370172476;BACH2:0.953163738115;VSX1,2:0.928800602254;TBX4,5:0.907907566217;ETS1,2:0.906882294936;POU5F1:0.881820314628;SREBF1,2:0.880819468848;NKX2-2,8:0.830751384138;FOX{F1,F2,J1}:0.786914184457;MAFB:0.754257232517;ATF6:0.721772835661;ELF1,2,4:0.693047578288;NFIL3:0.679423133682;STAT1,3:0.677248041132;TBP:0.66335070091;FOXQ1:0.601783191253;ESRRA:0.583431032283;ZEB1:0.557789534686;CDX1,2,4:0.542741970724;IRF1,2:0.526105547827;EP300:0.525080993656;AHR_ARNT_ARNT2:0.503909137782;NFATC1..3:0.500457674684;BPTF:0.496973451642;NFE2:0.479796635506;EGR1..3:0.420997619836;NKX6-1,2:0.419128439715;FOX{D1,D2}:0.412752530643;PAX6:0.410468000128;POU1F1:0.368130530132;MYB:0.367421847657;EN1,2:0.330742930556;HOXA9_MEIS1:0.292465023893;ZBTB16:0.284826477479;NFE2L2:0.28188244534;SNAI1..3:0.26620807142;NANOG:0.252809582937;POU2F1..3:0.241067549419;PAX3,7:0.234714057725;CUX2:0.193024024472;NKX3-1:0.176231802048;STAT5{A,B}:0.157839394287;IRF7:0.15541171206;FOXA2:0.0925103932118;CEBPA,B_DDIT3:0.0922297293742;SOX2:0.0863550623262;RORA:0.083388973047;POU3F1..4:0.0736517033435;MED-1{core}:0.0623145230109;ALX1:0.043908559981;E2F1..5:0.0411399443718;HBP1_HMGB_SSRP1_UBTF:0.0225513458728;PAX8:0.000990719537141;SOX17:-0.0349581655987;PPARG:-0.0711938354221;SMAD1..7,9:-0.0771757788933;TFDP1:-0.091122322026;STAT2,4,6:-0.0952160930266;AIRE:-0.102403626266;ZBTB6:-0.130116919932;HES1:-0.143850916482;SPZ1:-0.212588079711;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.214230617139;MYFfamily:-0.217914528193;TFAP2{A,C}:-0.238366694187;FOXP1:-0.25351030248;MYOD1:-0.268625670175;MEF2{A,B,C,D}:-0.273242536004;ALX4:-0.274275517669;ZFP161:-0.282367743042;NKX2-1,4:-0.289785915455;NKX3-2:-0.29338688297;HNF4A_NR2F1,2:-0.303007332871;OCT4_SOX2{dimer}:-0.320211067503;ELK1,4_GABP{A,B1}:-0.339850602097;HOX{A5,B5}:-0.340119907573;RFX1:-0.350401118323;NFY{A,B,C}:-0.354514297578;XBP1:-0.36973807903;SRF:-0.387427002247;TP53:-0.388767712538;PAX1,9:-0.398051062461;GCM1,2:-0.400043312334;CDC5L:-0.404183861838;PAX4:-0.406724137985;BREu{core}:-0.408354460699;IKZF2:-0.414236476569;SP1:-0.433335090376;NFIX:-0.439150915752;LMO2:-0.474562838532;HLF:-0.49602763214;CRX:-0.496040386498;HNF1A:-0.506588154445;MZF1:-0.518371126688;HMGA1,2:-0.520086374859;MAZ:-0.540361012513;GATA6:-0.545040155276;LHX3,4:-0.553616358641;HAND1,2:-0.556294293729;PAX5:-0.5664352791;ZIC1..3:-0.592773197822;TAL1_TCF{3,4,12}:-0.610838869047;NKX2-3_NKX2-5:-0.62829215833;PITX1..3:-0.645536679012;MYBL2:-0.668574336263;NR3C1:-0.680800763547;ESR1:-0.724096383956;GFI1:-0.727612577823;ZNF148:-0.745758638031;NHLH1,2:-0.756798564864;RXRA_VDR{dimer}:-0.777936977711;EVI1:-0.780324085172;PRRX1,2:-0.782259809346;TFCP2:-0.827193523834;MTE{core}:-0.834971558643;SOX5:-0.838787305812;YY1:-0.862232991649;FOXO1,3,4:-0.865770917329;NR5A1,2:-0.902804382597;GTF2A1,2:-0.925340665651;TEAD1:-0.944622860919;SOX{8,9,10}:-0.951682054418;NR6A1:-0.953451477404;HIC1:-1.01762574642;AR:-1.02806621292;GFI1B:-1.08497279946;ONECUT1,2:-1.12095505684;NRF1:-1.12558879501;IKZF1:-1.13115719786;ZNF143:-1.13403556135;ARID5B:-1.13898846103;REST:-1.15312498726;POU6F1:-1.15372129536;GTF2I:-1.18846606837;TOPORS:-1.19300085696;FOXM1:-1.20902400059;PRDM1:-1.21187836784;HOX{A4,D4}:-1.2275389645;UFEwm:-1.2282311081;TLX1..3_NFIC{dimer}:-1.24284526586;FOX{I1,J2}:-1.24883473574;XCPE1{core}:-1.27371797816;EBF1:-1.27380113266;TFAP2B:-1.28251956042;MTF1:-1.28801698167;KLF4:-1.30081638555;ADNP_IRX_SIX_ZHX:-1.33019038329;FOXL1:-1.34117657551;PATZ1:-1.34589801124;TEF:-1.3730466976;GATA4:-1.39096656892;bHLH_family:-1.39663884457;RBPJ:-1.41009820565;RREB1:-1.44938251406;HOX{A6,A7,B6,B7}:-1.47782745819;ZNF384:-1.47897006037;NR1H4:-1.48868316554;FOXD3:-1.50263761374;LEF1_TCF7_TCF7L1,2:-1.52212644074;ZNF238:-1.56073258436;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.5630918707;GZF1:-1.68254241863;T:-1.74370365162;TFAP4:-1.77009894657;PBX1:-1.82039993493;PDX1:-1.89239819597;DBP:-1.98100329815;ZNF423:-2.22959281669;RXR{A,B,G}:-2.82674107891
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11904-125F5;search_select_hide=table117:FF:11904-125F5
}}
}}

Latest revision as of 18:28, 4 June 2020

Name:immature langerhans cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13537
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexNA
ageNA
cell typelangerhans cell
cell lineNA
companyNA
collaborationTeunis Geijtenbeek
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberLC-I
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005013
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13537 CAGE DRX008543 DRR009415
Accession ID Hg19

Library idBAMCTSS
CNhs13537 DRZ000840 DRZ002225
Accession ID Hg38

Library idBAMCTSS
CNhs13537 DRZ012190 DRZ013575
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
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C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast1.133
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.0881
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13537

Jaspar motifP-value
MA0002.25.63753e-4
MA0003.10.303
MA0004.10.84
MA0006.10.408
MA0007.10.346
MA0009.10.154
MA0014.10.513
MA0017.10.77
MA0018.21.70956e-10
MA0019.10.586
MA0024.10.338
MA0025.10.0114
MA0027.10.953
MA0028.10.913
MA0029.10.24
MA0030.10.809
MA0031.10.649
MA0035.20.496
MA0038.10.334
MA0039.20.127
MA0040.10.797
MA0041.10.971
MA0042.10.844
MA0043.11.41157e-5
MA0046.10.461
MA0047.20.531
MA0048.10.789
MA0050.10.608
MA0051.10.571
MA0052.10.295
MA0055.10.679
MA0057.10.141
MA0058.10.888
MA0059.10.334
MA0060.10.0243
MA0061.13.4221e-30
MA0062.20.00573
MA0065.20.875
MA0066.10.656
MA0067.11.65269e-8
MA0068.10.338
MA0069.10.416
MA0070.10.0632
MA0071.10.938
MA0072.10.88
MA0073.10.519
MA0074.10.892
MA0076.10.5
MA0077.10.268
MA0078.10.739
MA0079.20.946
MA0080.22.94005e-13
MA0081.14.94492e-4
MA0083.10.901
MA0084.10.817
MA0087.10.214
MA0088.10.224
MA0090.10.00346
MA0091.10.756
MA0092.10.843
MA0093.10.828
MA0099.25.51161e-22
MA0100.10.789
MA0101.12.09668e-34
MA0102.20.0287
MA0103.10.826
MA0104.20.511
MA0105.13.21911e-20
MA0106.10.138
MA0107.19.09012e-36
MA0108.20.48
MA0111.10.848
MA0112.20.148
MA0113.10.815
MA0114.10.793
MA0115.10.832
MA0116.10.0333
MA0117.10.00131
MA0119.10.417
MA0122.10.496
MA0124.10.414
MA0125.10.282
MA0131.10.327
MA0135.10.859
MA0136.17.51311e-15
MA0137.20.763
MA0138.20.248
MA0139.10.658
MA0140.10.375
MA0141.10.824
MA0142.10.703
MA0143.10.802
MA0144.10.761
MA0145.10.903
MA0146.10.695
MA0147.10.344
MA0148.10.377
MA0149.10.404
MA0150.14.05598e-6
MA0152.10.564
MA0153.10.00171
MA0154.10.00883
MA0155.10.0107
MA0156.11.81059e-5
MA0157.10.476
MA0159.10.921
MA0160.10.0993
MA0162.10.023
MA0163.10.025
MA0164.10.65
MA0258.10.603
MA0259.10.71



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13537

Novel motifP-value
10.339
100.0186
1000.358
1010.561
1020.657
1030.0465
1040.669
1050.482
1064.93165e-4
1070.734
1080.771
1090.364
110.779
1100.825
1110.684
1120.128
1130.738
1140.705
1150.0642
1160.412
1170.12
1180.322
1190.887
120.506
1200.71
1210.265
1220.176
1230.67
1240.582
1250.329
1260.0129
1270.39
1280.277
1290.748
130.0101
1300.938
1310.722
1320.0197
1330.173
1340.464
1350.361
1360.129
1370.00102
1380.791
1390.549
140.975
1400.0514
1410.573
1420.981
1430.316
1440.516
1450.259
1460.382
1470.0796
1480.00733
1490.202
150.272
1500.231
1510.538
1520.241
1530.353
1540.204
1550.0541
1560.521
1570.456
1580.144
1590.298
160.806
1600.258
1610.669
1620.0574
1630.158
1640.098
1650.17
1660.154
1670.763
1680.467
1690.871
170.637
180.692
190.529
20.442
200.083
210.613
220.578
230.415
240.108
250.295
260.525
270.148
280.497
290.0775
30.482
300.703
310.549
320.00985
330.0901
340.549
350.356
360.281
370.199
380.739
390.793
40.679
400.703
410.223
420.543
430.261
440.412
450.952
460.75
470.702
480.814
490.283
50.542
500.987
510.529
520.165
530.948
540.884
550.908
560.579
570.867
580.18
590.573
60.805
600.131
610.942
620.264
630.866
640.737
650.856
660.732
670.934
680.0822
690.0151
70.21
700.585
710.0555
720.0183
730.247
740.115
750.183
760.0679
770.617
780.00608
790.773
80.396
800.97
810.489
820.605
830.0148
840.0632
850.243
860.0632
870.137
880.182
890.622
90.796
900.0312
910.5
920.395
930.39
940.161
950.26
960.267
970.581
980.531
998.16441e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13537


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)
0000840 (immature conventional dendritic cell)
0001014 (CD1a-positive Langerhans cell)
0001016 (immature CD1a-positive Langerhans cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011135 (human immature langerhans cells sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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