FF:12237-129G5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00006009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00006009 | ||
|accession_numbers=CAGE;DRX008539;DRR009411;DRZ000836;DRZ002221;DRZ012186;DRZ013571 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037012;DRR041378;DRZ007020 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000092,FF:0000101,FF:0000001,FF:0000010 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor3.CNhs12379.12237-129G5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor3.CNhs12379.12237-129G5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor3.CNhs12379.12237-129G5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor3.CNhs12379.12237-129G5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor3.CNhs12379.12237-129G5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12237-129G5 | |id=FF:12237-129G5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000010 | ||
|is_obsolete= | |||
|library_id=CNhs12379 | |||
|library_id_phase_based=2:CNhs12379 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12237 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.TTAGGC.12237 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12237 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.TTAGGC.12237 | |||
|name=amniotic membrane cells, donor3 | |name=amniotic membrane cells, donor3 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12379,LSID914,release011,COMPLETED | |profile_hcage=CNhs12379,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.261755491193011,0.266907849156363,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250792588382839,0,0,0,0,0,0.185678448206338,0,0,0.150679754695533,0,0,0,0,0,0,0,0,0,0.116328982947523,0,0,0.273468894662812,0.203617876205757,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.116328982947523,0.251048107070371,0,0,0.0189853557344258,0,0,0,0,0,0,0,0,0.116328982947523,0,0,0,0,0.116328982947523,0,0,0,0,0,0,0.0301879931583114,0,0,0,-0.134782397552868,0,0,0,0.0943150467553004,-0.211197402695869,0,0,0,0,-0.0980353512377064,0.389302604782501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0776466402340275,0,0,0,0.237437408388686,0.333572857076134,0,0,0.0387196047776043,0,0,0 | |||
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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 82: | ||
|rna_tube_id=129G5 | |rna_tube_id=129G5 | ||
|rna_weight_ug=16.46892 | |rna_weight_ug=16.46892 | ||
|rnaseq_library_id=SRhi10003.TTAGGC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.56754604680694e-225!GO:0043226;organelle;2.34260243619551e-172!GO:0043229;intracellular organelle;1.08765940409835e-171!GO:0005737;cytoplasm;1.36081408979518e-163!GO:0043231;intracellular membrane-bound organelle;3.20551452790086e-163!GO:0043227;membrane-bound organelle;5.33509418242366e-163!GO:0044422;organelle part;1.35696296103236e-112!GO:0044446;intracellular organelle part;3.36041745331669e-111!GO:0044444;cytoplasmic part;1.3503091588287e-104!GO:0043170;macromolecule metabolic process;6.49413686430994e-80!GO:0032991;macromolecular complex;9.53827102718777e-80!GO:0044238;primary metabolic process;1.38305007830697e-79!GO:0044237;cellular metabolic process;1.86188757060234e-76!GO:0005515;protein binding;2.80345980684378e-71!GO:0030529;ribonucleoprotein complex;4.01345701480754e-69!GO:0005634;nucleus;1.6650545854581e-68!GO:0003723;RNA binding;2.47254439255253e-62!GO:0044428;nuclear part;1.35091886722994e-58!GO:0043233;organelle lumen;1.07375619467898e-57!GO:0031974;membrane-enclosed lumen;1.07375619467898e-57!GO:0043283;biopolymer metabolic process;2.43583741790379e-48!GO:0033036;macromolecule localization;1.36914870804448e-46!GO:0019538;protein metabolic process;1.43518297360071e-46!GO:0015031;protein transport;5.15917394565597e-46!GO:0005739;mitochondrion;1.39140910308231e-45!GO:0010467;gene expression;9.73931018781921e-45!GO:0008104;protein localization;1.05354154479527e-43!GO:0045184;establishment of protein localization;4.85395775864771e-43!GO:0031090;organelle membrane;1.21766118881027e-41!GO:0044267;cellular protein metabolic process;9.54592697645847e-41!GO:0044260;cellular macromolecule metabolic process;1.10969694495512e-40!GO:0006412;translation;1.62539709517114e-40!GO:0043234;protein complex;2.70529956582402e-40!GO:0006396;RNA processing;7.19212182127087e-40!GO:0005840;ribosome;1.73553387472835e-39!GO:0031981;nuclear lumen;2.18773956188859e-37!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.02119967989743e-36!GO:0016043;cellular component organization and biogenesis;8.69608841355383e-36!GO:0016071;mRNA metabolic process;6.2231605696399e-35!GO:0003735;structural constituent of ribosome;1.91991049623028e-34!GO:0008380;RNA splicing;2.07162167839988e-33!GO:0005829;cytosol;2.79580191183385e-32!GO:0044429;mitochondrial part;1.54747741453959e-31!GO:0033279;ribosomal subunit;5.72176824473708e-31!GO:0006397;mRNA processing;3.11949883543483e-30!GO:0046907;intracellular transport;1.39513726038713e-29!GO:0031967;organelle envelope;1.41753866773086e-29!GO:0031975;envelope;2.97792724107059e-29!GO:0009059;macromolecule biosynthetic process;1.35466125243353e-28!GO:0006886;intracellular protein transport;1.43959365664578e-27!GO:0065003;macromolecular complex assembly;1.43959365664578e-27!GO:0009058;biosynthetic process;6.4151883996144e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.37221845855932e-26!GO:0043228;non-membrane-bound organelle;1.06190986708659e-25!GO:0043232;intracellular non-membrane-bound organelle;1.06190986708659e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.10443079178113e-25!GO:0003676;nucleic acid binding;2.22202162157376e-25!GO:0044249;cellular biosynthetic process;3.81067842225218e-25!GO:0022607;cellular component assembly;7.34078842947142e-25!GO:0005681;spliceosome;5.01961547273493e-24!GO:0016070;RNA metabolic process;6.0128904598216e-24!GO:0005654;nucleoplasm;1.23100514247333e-23!GO:0044445;cytosolic part;4.71663073862208e-22!GO:0005740;mitochondrial envelope;7.82510288920159e-21!GO:0044451;nucleoplasm part;3.91861773390113e-20!GO:0006996;organelle organization and biogenesis;5.15820337167254e-20!GO:0031966;mitochondrial membrane;8.06683223950579e-20!GO:0006119;oxidative phosphorylation;5.68339740191046e-19!GO:0022618;protein-RNA complex assembly;8.55165608497428e-19!GO:0006512;ubiquitin cycle;9.2072851576398e-19!GO:0051649;establishment of cellular localization;1.13817802457033e-18!GO:0051641;cellular localization;1.14951172568535e-18!GO:0019866;organelle inner membrane;1.27798041050794e-18!GO:0006457;protein folding;3.67485747317187e-18!GO:0008134;transcription factor binding;3.78899309910069e-18!GO:0012505;endomembrane system;1.57667623667237e-17!GO:0005743;mitochondrial inner membrane;1.80364875622328e-17!GO:0015935;small ribosomal subunit;1.09411595651785e-16!GO:0016874;ligase activity;1.09411595651785e-16!GO:0044455;mitochondrial membrane part;1.86963730005163e-16!GO:0005794;Golgi apparatus;5.96288855878253e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;7.24414898555774e-16!GO:0048770;pigment granule;8.9751094897332e-16!GO:0042470;melanosome;8.9751094897332e-16!GO:0006259;DNA metabolic process;1.32390203157329e-15!GO:0016462;pyrophosphatase activity;1.32390203157329e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.32390203157329e-15!GO:0044265;cellular macromolecule catabolic process;1.43487934630281e-15!GO:0019941;modification-dependent protein catabolic process;1.57462070322185e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.57462070322185e-15!GO:0044257;cellular protein catabolic process;1.72437751763466e-15!GO:0043412;biopolymer modification;1.75153510899926e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.81441557529162e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.92971995101983e-15!GO:0015934;large ribosomal subunit;2.60152062332399e-15!GO:0017111;nucleoside-triphosphatase activity;1.07034591828395e-14!GO:0043285;biopolymer catabolic process;1.15638193823865e-14!GO:0005783;endoplasmic reticulum;1.35238274621516e-14!GO:0005746;mitochondrial respiratory chain;2.07584941082447e-14!GO:0005730;nucleolus;2.26867855725698e-14!GO:0008135;translation factor activity, nucleic acid binding;2.73184530100683e-14!GO:0006464;protein modification process;3.9281860206442e-14!GO:0000166;nucleotide binding;6.89247693076993e-14!GO:0048193;Golgi vesicle transport;1.03948158874303e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.78532978924046e-13!GO:0006605;protein targeting;2.04856465586657e-13!GO:0043687;post-translational protein modification;2.67796073549318e-13!GO:0016192;vesicle-mediated transport;5.40388619616822e-13!GO:0009057;macromolecule catabolic process;5.438242605472e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.34496626833564e-13!GO:0030163;protein catabolic process;7.41930533174707e-13!GO:0051082;unfolded protein binding;7.41930533174707e-13!GO:0016604;nuclear body;8.82698519331916e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.32606026680942e-12!GO:0003954;NADH dehydrogenase activity;1.32606026680942e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.32606026680942e-12!GO:0031980;mitochondrial lumen;1.83712306164175e-12!GO:0005759;mitochondrial matrix;1.83712306164175e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.91171701281343e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;5.23799508620532e-12!GO:0000375;RNA splicing, via transesterification reactions;5.23799508620532e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.23799508620532e-12!GO:0016607;nuclear speck;6.8797016591498e-12!GO:0050794;regulation of cellular process;6.8797016591498e-12!GO:0006413;translational initiation;8.18110451188883e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.30204343969815e-11!GO:0044432;endoplasmic reticulum part;2.39718781809332e-11!GO:0006446;regulation of translational initiation;2.7773946227601e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.92314966872185e-11!GO:0005768;endosome;4.66444366964564e-11!GO:0042775;organelle ATP synthesis coupled electron transport;4.88581917230664e-11!GO:0042773;ATP synthesis coupled electron transport;4.88581917230664e-11!GO:0003743;translation initiation factor activity;5.53351634224038e-11!GO:0008639;small protein conjugating enzyme activity;5.84362602327741e-11!GO:0019787;small conjugating protein ligase activity;7.06473655435804e-11!GO:0044248;cellular catabolic process;7.09229676629869e-11!GO:0030964;NADH dehydrogenase complex (quinone);7.80855424931748e-11!GO:0045271;respiratory chain complex I;7.80855424931748e-11!GO:0005747;mitochondrial respiratory chain complex I;7.80855424931748e-11!GO:0003712;transcription cofactor activity;8.90009428278452e-11!GO:0004842;ubiquitin-protein ligase activity;1.14207877865606e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.26441288561808e-10!GO:0006366;transcription from RNA polymerase II promoter;1.1549559249828e-09!GO:0005635;nuclear envelope;1.52735924709683e-09!GO:0005761;mitochondrial ribosome;2.0212257789413e-09!GO:0000313;organellar ribosome;2.0212257789413e-09!GO:0048523;negative regulation of cellular process;2.17272205064207e-09!GO:0032553;ribonucleotide binding;2.59370742482676e-09!GO:0032555;purine ribonucleotide binding;2.59370742482676e-09!GO:0006913;nucleocytoplasmic transport;3.37736003724877e-09!GO:0008565;protein transporter activity;3.56703645485646e-09!GO:0005793;ER-Golgi intermediate compartment;3.57993428818153e-09!GO:0006915;apoptosis;5.23456203767734e-09!GO:0012501;programmed cell death;5.38638421339999e-09!GO:0031965;nuclear membrane;5.78629612880931e-09!GO:0051169;nuclear transport;5.8341375995472e-09!GO:0006974;response to DNA damage stimulus;7.23056299079789e-09!GO:0016881;acid-amino acid ligase activity;7.50680139641262e-09!GO:0008219;cell death;7.9949418945915e-09!GO:0016265;death;7.9949418945915e-09!GO:0006461;protein complex assembly;8.90159875279095e-09!GO:0007049;cell cycle;1.11125389693635e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.37137663738829e-08!GO:0042254;ribosome biogenesis and assembly;1.45175511897295e-08!GO:0017076;purine nucleotide binding;1.51667955383137e-08!GO:0019222;regulation of metabolic process;1.56802510090698e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.40275282525764e-08!GO:0050789;regulation of biological process;2.52503339824458e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.7723562532032e-08!GO:0030120;vesicle coat;4.315465866458e-08!GO:0030662;coated vesicle membrane;4.315465866458e-08!GO:0017038;protein import;4.31698717911699e-08!GO:0048519;negative regulation of biological process;5.45137369566253e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.86105473945513e-08!GO:0016887;ATPase activity;6.33502074145211e-08!GO:0005789;endoplasmic reticulum membrane;6.4111929516129e-08!GO:0004386;helicase activity;6.63140774685954e-08!GO:0005524;ATP binding;7.65237378353212e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;7.92115374966489e-08!GO:0006888;ER to Golgi vesicle-mediated transport;8.83671058106664e-08!GO:0042623;ATPase activity, coupled;9.17958370754076e-08!GO:0006281;DNA repair;1.08206353141603e-07!GO:0031324;negative regulation of cellular metabolic process;1.53541431205513e-07!GO:0048475;coated membrane;1.7144308879871e-07!GO:0030117;membrane coat;1.7144308879871e-07!GO:0032446;protein modification by small protein conjugation;1.82385217977674e-07!GO:0009260;ribonucleotide biosynthetic process;2.0449305711104e-07!GO:0051186;cofactor metabolic process;2.13044557123821e-07!GO:0032559;adenyl ribonucleotide binding;2.21264936030281e-07!GO:0015986;ATP synthesis coupled proton transport;2.58657550546014e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.58657550546014e-07!GO:0006323;DNA packaging;2.60936703995137e-07!GO:0009259;ribonucleotide metabolic process;2.76736134708713e-07!GO:0051246;regulation of protein metabolic process;2.97743309573872e-07!GO:0016567;protein ubiquitination;4.24797762563394e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.51213312360375e-07!GO:0044453;nuclear membrane part;4.60135550430495e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.74902179843459e-07!GO:0009892;negative regulation of metabolic process;5.16489546072381e-07!GO:0008026;ATP-dependent helicase activity;5.46527054999521e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.58338682626898e-07!GO:0000151;ubiquitin ligase complex;5.87996567959673e-07!GO:0016564;transcription repressor activity;5.94194972622629e-07!GO:0009060;aerobic respiration;6.1397145286417e-07!GO:0006164;purine nucleotide biosynthetic process;6.4989036192964e-07!GO:0006793;phosphorus metabolic process;6.96839184396765e-07!GO:0006796;phosphate metabolic process;6.96839184396765e-07!GO:0019829;cation-transporting ATPase activity;8.71388056494189e-07!GO:0009150;purine ribonucleotide metabolic process;9.09277514987206e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.37535154900654e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.37535154900654e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.14877704450933e-06!GO:0006163;purine nucleotide metabolic process;1.16781312051428e-06!GO:0016568;chromatin modification;1.32054093138956e-06!GO:0009719;response to endogenous stimulus;1.34265946447565e-06!GO:0044431;Golgi apparatus part;1.46338239269475e-06!GO:0030554;adenyl nucleotide binding;1.46830786351022e-06!GO:0005770;late endosome;1.64847741786621e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.68290117653574e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.68290117653574e-06!GO:0000245;spliceosome assembly;1.68290117653574e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.68290117653574e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.68290117653574e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.68290117653574e-06!GO:0006399;tRNA metabolic process;1.83545638844867e-06!GO:0016481;negative regulation of transcription;1.96454826460318e-06!GO:0044440;endosomal part;2.04806730735965e-06!GO:0010008;endosome membrane;2.04806730735965e-06!GO:0051276;chromosome organization and biogenesis;2.37067573457837e-06!GO:0006754;ATP biosynthetic process;2.39404998257027e-06!GO:0006753;nucleoside phosphate metabolic process;2.39404998257027e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.39576214451752e-06!GO:0043038;amino acid activation;3.12326535452931e-06!GO:0006418;tRNA aminoacylation for protein translation;3.12326535452931e-06!GO:0043039;tRNA aminoacylation;3.12326535452931e-06!GO:0005643;nuclear pore;3.34130758343899e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.49191071946424e-06!GO:0003714;transcription corepressor activity;3.4983500250039e-06!GO:0031323;regulation of cellular metabolic process;3.55436448172928e-06!GO:0045333;cellular respiration;3.72323680250863e-06!GO:0043566;structure-specific DNA binding;3.97929759752327e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.37343633354919e-06!GO:0003924;GTPase activity;4.43229524141501e-06!GO:0009056;catabolic process;4.57543340863933e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.24682419981801e-06!GO:0043069;negative regulation of programmed cell death;5.29955426425516e-06!GO:0006916;anti-apoptosis;5.29955426425516e-06!GO:0009141;nucleoside triphosphate metabolic process;5.90134196086617e-06!GO:0043066;negative regulation of apoptosis;6.00145782570073e-06!GO:0016310;phosphorylation;6.00145782570073e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.19621396887766e-06!GO:0031988;membrane-bound vesicle;8.40759472971816e-06!GO:0050657;nucleic acid transport;8.48400711826906e-06!GO:0051236;establishment of RNA localization;8.48400711826906e-06!GO:0050658;RNA transport;8.48400711826906e-06!GO:0005798;Golgi-associated vesicle;8.61182095574511e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.94774435841738e-06!GO:0009144;purine nucleoside triphosphate metabolic process;8.94774435841738e-06!GO:0003697;single-stranded DNA binding;9.41047790157829e-06!GO:0003713;transcription coactivator activity;9.90045089150696e-06!GO:0016023;cytoplasmic membrane-bound vesicle;9.90942179547231e-06!GO:0006732;coenzyme metabolic process;1.07913465528341e-05!GO:0000074;regulation of progression through cell cycle;1.10911082878068e-05!GO:0051726;regulation of cell cycle;1.16711533895398e-05!GO:0006403;RNA localization;1.1748046242353e-05!GO:0005773;vacuole;1.24962322610783e-05!GO:0022402;cell cycle process;1.25841895714236e-05!GO:0051170;nuclear import;1.31354650034451e-05!GO:0006350;transcription;1.39262341094773e-05!GO:0045259;proton-transporting ATP synthase complex;1.41362195659639e-05!GO:0007264;small GTPase mediated signal transduction;1.44814387562978e-05!GO:0043623;cellular protein complex assembly;1.51500058492809e-05!GO:0031982;vesicle;1.61356990392105e-05!GO:0009055;electron carrier activity;1.71309232580614e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.71978466300887e-05!GO:0006606;protein import into nucleus;1.78281184300599e-05!GO:0065002;intracellular protein transport across a membrane;1.81381968837131e-05!GO:0016072;rRNA metabolic process;1.93196395432747e-05!GO:0046034;ATP metabolic process;2.00767747224983e-05!GO:0006364;rRNA processing;2.00767747224983e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.01599394644085e-05!GO:0006613;cotranslational protein targeting to membrane;2.34765433850018e-05!GO:0006099;tricarboxylic acid cycle;2.80660971693287e-05!GO:0046356;acetyl-CoA catabolic process;2.80660971693287e-05!GO:0031410;cytoplasmic vesicle;2.96510357676859e-05!GO:0042981;regulation of apoptosis;2.96510357676859e-05!GO:0007005;mitochondrion organization and biogenesis;3.08074581471252e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.13253681975905e-05!GO:0010468;regulation of gene expression;3.1426924162269e-05!GO:0005788;endoplasmic reticulum lumen;3.39134056192054e-05!GO:0006333;chromatin assembly or disassembly;4.10673888947638e-05!GO:0043067;regulation of programmed cell death;4.24858500185109e-05!GO:0005769;early endosome;4.48094472107814e-05!GO:0007243;protein kinase cascade;4.77947468491414e-05!GO:0016563;transcription activator activity;4.93272829808764e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.19531491197565e-05!GO:0005667;transcription factor complex;5.48486608811182e-05!GO:0000139;Golgi membrane;5.49865841049315e-05!GO:0031252;leading edge;6.32844482012801e-05!GO:0003724;RNA helicase activity;7.04974808526145e-05!GO:0019843;rRNA binding;7.30576569777172e-05!GO:0048471;perinuclear region of cytoplasm;7.50249237425897e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.67943088249703e-05!GO:0019899;enzyme binding;7.94409567350371e-05!GO:0006084;acetyl-CoA metabolic process;8.62511811804729e-05!GO:0000323;lytic vacuole;9.22448953742102e-05!GO:0005764;lysosome;9.22448953742102e-05!GO:0065007;biological regulation;9.33064682688087e-05!GO:0065004;protein-DNA complex assembly;0.000102411688110593!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000106057261318082!GO:0046930;pore complex;0.000106057261318082!GO:0030036;actin cytoskeleton organization and biogenesis;0.00011108938640729!GO:0005839;proteasome core complex (sensu Eukaryota);0.000122461202758162!GO:0016740;transferase activity;0.000126406661075984!GO:0008270;zinc ion binding;0.000129116572582888!GO:0008654;phospholipid biosynthetic process;0.000129116572582888!GO:0030057;desmosome;0.000133076780607111!GO:0051028;mRNA transport;0.000138397592495017!GO:0051789;response to protein stimulus;0.000139118235472991!GO:0006986;response to unfolded protein;0.000139118235472991!GO:0032774;RNA biosynthetic process;0.000145427077315258!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000160512964264603!GO:0006351;transcription, DNA-dependent;0.000163307071216002!GO:0000785;chromatin;0.000171607303701955!GO:0051188;cofactor biosynthetic process;0.000187177109884367!GO:0009109;coenzyme catabolic process;0.000194590298096697!GO:0003729;mRNA binding;0.000199899088289338!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00023620990448341!GO:0030133;transport vesicle;0.000263199951258782!GO:0033116;ER-Golgi intermediate compartment membrane;0.000269648924681718!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000269648924681718!GO:0051252;regulation of RNA metabolic process;0.000277984882312719!GO:0051427;hormone receptor binding;0.000286335471986148!GO:0016859;cis-trans isomerase activity;0.00029801296093555!GO:0005694;chromosome;0.000310130815964374!GO:0045892;negative regulation of transcription, DNA-dependent;0.000337870322962301!GO:0004298;threonine endopeptidase activity;0.000337870322962301!GO:0006260;DNA replication;0.000342606708651759!GO:0051187;cofactor catabolic process;0.000381304174310645!GO:0043021;ribonucleoprotein binding;0.000384738666777697!GO:0045786;negative regulation of progression through cell cycle;0.000417854503989659!GO:0006752;group transfer coenzyme metabolic process;0.000459484817442674!GO:0042802;identical protein binding;0.000479114047577509!GO:0030867;rough endoplasmic reticulum membrane;0.000516296571319457!GO:0035257;nuclear hormone receptor binding;0.000554663591908196!GO:0005813;centrosome;0.000585388023913356!GO:0016779;nucleotidyltransferase activity;0.000599298287836472!GO:0030029;actin filament-based process;0.000605095895185061!GO:0030659;cytoplasmic vesicle membrane;0.000707794840538261!GO:0044427;chromosomal part;0.000726347870528249!GO:0005525;GTP binding;0.000812245843473181!GO:0006402;mRNA catabolic process;0.000876968268329403!GO:0006612;protein targeting to membrane;0.000929374006568579!GO:0006891;intra-Golgi vesicle-mediated transport;0.000951158179457982!GO:0016853;isomerase activity;0.000978341221508329!GO:0045449;regulation of transcription;0.00098090773474157!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00098090773474157!GO:0007265;Ras protein signal transduction;0.00105975173293624!GO:0003690;double-stranded DNA binding;0.00106840486636867!GO:0008092;cytoskeletal protein binding;0.00113860316917243!GO:0015630;microtubule cytoskeleton;0.00135479455271002!GO:0051168;nuclear export;0.00137833120431264!GO:0051920;peroxiredoxin activity;0.00138661142951008!GO:0009967;positive regulation of signal transduction;0.00139819463645668!GO:0008186;RNA-dependent ATPase activity;0.00139959383643274!GO:0030658;transport vesicle membrane;0.00141549136821317!GO:0009117;nucleotide metabolic process;0.00146753263087815!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00146753263087815!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00149201394009361!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00152249766688971!GO:0015980;energy derivation by oxidation of organic compounds;0.00165323073590025!GO:0008250;oligosaccharyl transferase complex;0.00171337316927799!GO:0046914;transition metal ion binding;0.00173284438255281!GO:0030384;phosphoinositide metabolic process;0.00175269956114365!GO:0005815;microtubule organizing center;0.00176124700101831!GO:0030663;COPI coated vesicle membrane;0.00180277851768828!GO:0030126;COPI vesicle coat;0.00180277851768828!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0019260298291104!GO:0005762;mitochondrial large ribosomal subunit;0.00200410455904913!GO:0000315;organellar large ribosomal subunit;0.00200410455904913!GO:0005048;signal sequence binding;0.00200668352204274!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00204881916943693!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00207706717676487!GO:0065009;regulation of a molecular function;0.00207706717676487!GO:0044433;cytoplasmic vesicle part;0.00208324208272037!GO:0030118;clathrin coat;0.00208410761860299!GO:0000314;organellar small ribosomal subunit;0.0021097836227549!GO:0005763;mitochondrial small ribosomal subunit;0.0021097836227549!GO:0016787;hydrolase activity;0.00212956134807203!GO:0016197;endosome transport;0.00219733931396385!GO:0031072;heat shock protein binding;0.00220558994219592!GO:0048500;signal recognition particle;0.00233138354730423!GO:0043488;regulation of mRNA stability;0.00239417168615789!GO:0043487;regulation of RNA stability;0.00239417168615789!GO:0046489;phosphoinositide biosynthetic process;0.00244218906432957!GO:0003899;DNA-directed RNA polymerase activity;0.00245800323275115!GO:0003711;transcription elongation regulator activity;0.00245800323275115!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00248043653382142!GO:0046474;glycerophospholipid biosynthetic process;0.00248408668963205!GO:0030132;clathrin coat of coated pit;0.00257925786597352!GO:0016363;nuclear matrix;0.00257925786597352!GO:0006650;glycerophospholipid metabolic process;0.0026780880807855!GO:0005791;rough endoplasmic reticulum;0.00267873317235782!GO:0043681;protein import into mitochondrion;0.00268377232133769!GO:0004576;oligosaccharyl transferase activity;0.00298383922746611!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00309767889655168!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00311002469196501!GO:0006355;regulation of transcription, DNA-dependent;0.00316420921335149!GO:0046983;protein dimerization activity;0.00318797571793745!GO:0009108;coenzyme biosynthetic process;0.00326618973768547!GO:0005885;Arp2/3 protein complex;0.00340633755961055!GO:0012506;vesicle membrane;0.00341817277387655!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00341979237447455!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00341979237447455!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00341979237447455!GO:0045045;secretory pathway;0.00342172289628249!GO:0006401;RNA catabolic process;0.00346240593073988!GO:0005741;mitochondrial outer membrane;0.00346473532111565!GO:0032561;guanyl ribonucleotide binding;0.00358904585063781!GO:0019001;guanyl nucleotide binding;0.00358904585063781!GO:0004004;ATP-dependent RNA helicase activity;0.00359509235780573!GO:0031968;organelle outer membrane;0.00368517718186691!GO:0008286;insulin receptor signaling pathway;0.00392144245977194!GO:0030119;AP-type membrane coat adaptor complex;0.00403239314718091!GO:0030660;Golgi-associated vesicle membrane;0.00406147344856414!GO:0030134;ER to Golgi transport vesicle;0.0041638733121781!GO:0019867;outer membrane;0.00418314380270611!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00419018743088287!GO:0001726;ruffle;0.00459662066098225!GO:0000059;protein import into nucleus, docking;0.00460318609499184!GO:0031625;ubiquitin protein ligase binding;0.00479639853960649!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0052724549021569!GO:0015002;heme-copper terminal oxidase activity;0.0052724549021569!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0052724549021569!GO:0004129;cytochrome-c oxidase activity;0.0052724549021569!GO:0030127;COPII vesicle coat;0.00535280900895339!GO:0012507;ER to Golgi transport vesicle membrane;0.00535280900895339!GO:0008361;regulation of cell size;0.00539440449829212!GO:0006354;RNA elongation;0.00546299117842459!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00571773463271076!GO:0022890;inorganic cation transmembrane transporter activity;0.00580103351105093!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00587113368725603!GO:0030137;COPI-coated vesicle;0.00588787482942084!GO:0051128;regulation of cellular component organization and biogenesis;0.00612978271477182!GO:0004674;protein serine/threonine kinase activity;0.00620355172745485!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0063256946225076!GO:0045047;protein targeting to ER;0.0063256946225076!GO:0045893;positive regulation of transcription, DNA-dependent;0.00639045887597781!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00673644676142776!GO:0048522;positive regulation of cellular process;0.00684560872964269!GO:0030131;clathrin adaptor complex;0.00692489449684127!GO:0008312;7S RNA binding;0.0069688424019942!GO:0001558;regulation of cell growth;0.00702292778711413!GO:0051087;chaperone binding;0.00704278894631883!GO:0006383;transcription from RNA polymerase III promoter;0.00704278894631883!GO:0048487;beta-tubulin binding;0.00728926082745224!GO:0003746;translation elongation factor activity;0.00751218598713558!GO:0005905;coated pit;0.00774660004309694!GO:0018196;peptidyl-asparagine modification;0.00778828669037467!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00778828669037467!GO:0031901;early endosome membrane;0.00795389225303019!GO:0030125;clathrin vesicle coat;0.00811267329344762!GO:0030665;clathrin coated vesicle membrane;0.00811267329344762!GO:0000278;mitotic cell cycle;0.00815556738881516!GO:0016049;cell growth;0.00869554851719403!GO:0031497;chromatin assembly;0.0091965656772345!GO:0007034;vacuolar transport;0.00956730603727471!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0096500641139034!GO:0030833;regulation of actin filament polymerization;0.00977335543201309!GO:0017166;vinculin binding;0.0109887969832243!GO:0005684;U2-dependent spliceosome;0.0110019152734796!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0111476861596956!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0111476861596956!GO:0006839;mitochondrial transport;0.0111822098377418!GO:0031529;ruffle organization and biogenesis;0.0114781274500688!GO:0006892;post-Golgi vesicle-mediated transport;0.0115856402295539!GO:0006334;nucleosome assembly;0.011590702121466!GO:0006626;protein targeting to mitochondrion;0.0123080079169476!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0125566795554715!GO:0015399;primary active transmembrane transporter activity;0.0125566795554715!GO:0050811;GABA receptor binding;0.0131713036364029!GO:0035258;steroid hormone receptor binding;0.0140702281950408!GO:0007242;intracellular signaling cascade;0.0141988718287832!GO:0008287;protein serine/threonine phosphatase complex;0.0142138425073443!GO:0006818;hydrogen transport;0.0146493813409019!GO:0045941;positive regulation of transcription;0.0147010248337736!GO:0031902;late endosome membrane;0.0148242613709318!GO:0016251;general RNA polymerase II transcription factor activity;0.0148774489827078!GO:0048146;positive regulation of fibroblast proliferation;0.0149700418180644!GO:0016044;membrane organization and biogenesis;0.0150182014747051!GO:0005869;dynactin complex;0.0151355767897666!GO:0006417;regulation of translation;0.01560965501537!GO:0015992;proton transport;0.0162383846222417!GO:0005083;small GTPase regulator activity;0.0163819470228139!GO:0051098;regulation of binding;0.016576406071513!GO:0008601;protein phosphatase type 2A regulator activity;0.0167679586884807!GO:0045454;cell redox homeostasis;0.0168674153673387!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0168674153673387!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0173074261616282!GO:0043022;ribosome binding;0.0178313047706437!GO:0005938;cell cortex;0.0178313047706437!GO:0008139;nuclear localization sequence binding;0.0181495903915648!GO:0000159;protein phosphatase type 2A complex;0.0181796881413444!GO:0006376;mRNA splice site selection;0.0183676029486941!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0183676029486941!GO:0048144;fibroblast proliferation;0.0186689611219506!GO:0048145;regulation of fibroblast proliferation;0.0186689611219506!GO:0006497;protein amino acid lipidation;0.0196087968972658!GO:0006352;transcription initiation;0.0198478598942656!GO:0035035;histone acetyltransferase binding;0.0199641467307161!GO:0030041;actin filament polymerization;0.0200341776756676!GO:0009966;regulation of signal transduction;0.0203607152918047!GO:0040008;regulation of growth;0.0204736151915907!GO:0030521;androgen receptor signaling pathway;0.0206394320984229!GO:0006414;translational elongation;0.0208565610130181!GO:0008022;protein C-terminus binding;0.0211327933789336!GO:0006611;protein export from nucleus;0.0215253257308305!GO:0007041;lysosomal transport;0.0215596534196416!GO:0007030;Golgi organization and biogenesis;0.0215596534196416!GO:0016272;prefoldin complex;0.0215966209882432!GO:0051101;regulation of DNA binding;0.0219390372504522!GO:0008234;cysteine-type peptidase activity;0.0221378400577358!GO:0032940;secretion by cell;0.0224836887704436!GO:0008180;signalosome;0.0230704503363662!GO:0030832;regulation of actin filament length;0.0245346732835616!GO:0031543;peptidyl-proline dioxygenase activity;0.0245843006199765!GO:0032535;regulation of cellular component size;0.0249235767753234!GO:0030027;lamellipodium;0.0249604055651034!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0249608028125715!GO:0030880;RNA polymerase complex;0.0252010725810546!GO:0006506;GPI anchor biosynthetic process;0.0253141138335208!GO:0006595;polyamine metabolic process;0.0253299170999962!GO:0046467;membrane lipid biosynthetic process;0.0254418071106466!GO:0007004;telomere maintenance via telomerase;0.0256795234993329!GO:0000209;protein polyubiquitination;0.0256795234993329!GO:0007006;mitochondrial membrane organization and biogenesis;0.0256869616713908!GO:0043087;regulation of GTPase activity;0.0264836914964214!GO:0015631;tubulin binding;0.0265589743483492!GO:0032318;regulation of Ras GTPase activity;0.0267002025111167!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0270026549596465!GO:0005774;vacuolar membrane;0.027358595129245!GO:0006261;DNA-dependent DNA replication;0.0275005285619711!GO:0007010;cytoskeleton organization and biogenesis;0.0275921716215243!GO:0006505;GPI anchor metabolic process;0.0287422641058992!GO:0022406;membrane docking;0.029736910804116!GO:0048278;vesicle docking;0.029736910804116!GO:0031461;cullin-RING ubiquitin ligase complex;0.0303577564996863!GO:0051301;cell division;0.0304085287085857!GO:0045334;clathrin-coated endocytic vesicle;0.0305357927707772!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0314168503705629!GO:0006509;membrane protein ectodomain proteolysis;0.0314168503705629!GO:0033619;membrane protein proteolysis;0.0314168503705629!GO:0005912;adherens junction;0.0316768149356555!GO:0044452;nucleolar part;0.0318675465863657!GO:0006091;generation of precursor metabolites and energy;0.032174290512617!GO:0045947;negative regulation of translational initiation;0.0328134077403453!GO:0009165;nucleotide biosynthetic process;0.0330865403033938!GO:0006289;nucleotide-excision repair;0.0336075686057781!GO:0050790;regulation of catalytic activity;0.0336075686057781!GO:0016301;kinase activity;0.0348052498027373!GO:0008154;actin polymerization and/or depolymerization;0.0349506215316027!GO:0006904;vesicle docking during exocytosis;0.0362091057179006!GO:0031371;ubiquitin conjugating enzyme complex;0.036518430630437!GO:0030911;TPR domain binding;0.037099150243559!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.037099150243559!GO:0033043;regulation of organelle organization and biogenesis;0.037099150243559!GO:0032507;maintenance of cellular protein localization;0.0375394964842755!GO:0050681;androgen receptor binding;0.0385959783702021!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0387477728834768!GO:0030518;steroid hormone receptor signaling pathway;0.0387477728834768!GO:0005832;chaperonin-containing T-complex;0.0389311026969629!GO:0003682;chromatin binding;0.0392967951432939!GO:0008333;endosome to lysosome transport;0.0393309236856779!GO:0003702;RNA polymerase II transcription factor activity;0.0394299766830175!GO:0043492;ATPase activity, coupled to movement of substances;0.0396938924991147!GO:0006338;chromatin remodeling;0.0421475908964718!GO:0008426;protein kinase C inhibitor activity;0.0430015087526579!GO:0001666;response to hypoxia;0.0444081193053988!GO:0042787;protein ubiquitination during ubiquitin-dependent protein catabolic process;0.0445519484088149!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0449643122507594!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0449643122507594!GO:0000428;DNA-directed RNA polymerase complex;0.0449643122507594!GO:0003684;damaged DNA binding;0.0451127521842064!GO:0000049;tRNA binding;0.0451966601391267!GO:0016408;C-acyltransferase activity;0.0452841730310286!GO:0022403;cell cycle phase;0.0453398798154202!GO:0030176;integral to endoplasmic reticulum membrane;0.0456748891120671!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0463444559353029!GO:0042158;lipoprotein biosynthetic process;0.0463444559353029!GO:0007050;cell cycle arrest;0.0464746708266712!GO:0005856;cytoskeleton;0.0467047927100123!GO:0030332;cyclin binding;0.0480132949076825 | |||
|sample_id=12237 | |sample_id=12237 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=amnion | |sample_tissue=amnion | ||
|top_motifs=FOXL1:2.31664437587;PAX4:2.19483939877;NKX2-1,4:2.12953346534;HAND1,2:2.02299095803;SNAI1..3:1.98896591685;HOX{A6,A7,B6,B7}:1.98704421016;EP300:1.9334910447;FOXM1:1.91994503774;ZEB1:1.77760281958;RORA:1.70825824866;NKX2-2,8:1.56722281265;CDC5L:1.5468868799;FOXO1,3,4:1.49823769421;FOXN1:1.46877515309;HIF1A:1.46276468348;XCPE1{core}:1.43037381255;ZNF148:1.29929070134;TEAD1:1.26659912725;AIRE:1.25855184483;FOX{I1,J2}:1.21039851511;POU6F1:1.20935148872;SP1:1.10166432227;HMGA1,2:1.05471077744;TEF:1.00983236428;ARID5B:0.987920395602;MAZ:0.940203042252;PPARG:0.920504335992;POU3F1..4:0.911340086924;TBX4,5:0.8987396591;GLI1..3:0.891614262353;FOS_FOS{B,L1}_JUN{B,D}:0.871473418347;TP53:0.854819703128;TLX2:0.774979251224;FOX{D1,D2}:0.751496389477;CRX:0.747160206813;PAX8:0.686288193013;TFAP2{A,C}:0.631026384335;PAX5:0.622039597351;MYOD1:0.612664509964;BACH2:0.606768144529;GCM1,2:0.597345902457;ONECUT1,2:0.595016274021;UFEwm:0.581638540584;ZNF384:0.559227623279;STAT1,3:0.502795232433;RXRA_VDR{dimer}:0.481861483377;IKZF1:0.479123304428;TBP:0.469838683651;ALX1:0.45980531434;HOX{A5,B5}:0.451455347093;ADNP_IRX_SIX_ZHX:0.438983736026;ZIC1..3:0.404971707214;POU1F1:0.400057119706;BPTF:0.374784592199;FOXQ1:0.361786212001;FOSL2:0.361736647448;FOXA2:0.358378515188;RFX1:0.318769144457;LEF1_TCF7_TCF7L1,2:0.316721383938;PAX1,9:0.306583477645;VSX1,2:0.305980777181;ZNF238:0.295692153516;CREB1:0.258044054323;HLF:0.25221005401;NFATC1..3:0.248665006526;NFIL3:0.244997051001;MTF1:0.237027176488;PITX1..3:0.216430016946;TFCP2:0.211465843433;ESR1:0.201497322947;NKX2-3_NKX2-5:0.190497247818;JUN:0.182515903093;MED-1{core}:0.178325007391;bHLH_family:0.176350066918;NR3C1:0.176283125338;DBP:0.175366395951;GTF2I:0.128024378998;HOXA9_MEIS1:0.105493969854;ZBTB6:0.101339138981;PAX2:0.0820453280066;HBP1_HMGB_SSRP1_UBTF:0.0673433472273;EVI1:0.0550102854654;HMX1:0.0117837373067;NRF1:0.0114859717235;EBF1:-0.00539253530439;HOX{A4,D4}:-0.0177746939063;SOX5:-0.0181870891671;ELK1,4_GABP{A,B1}:-0.0283591125945;GATA6:-0.0417042416454;GZF1:-0.0430442290473;NKX3-2:-0.047630160683;POU2F1..3:-0.0637146524054;ATF5_CREB3:-0.086858742427;ZNF143:-0.0917137290203;HSF1,2:-0.105571543355;KLF4:-0.107629122309;ZBTB16:-0.110008683164;NFE2:-0.123568015097;SREBF1,2:-0.141505968582;TLX1..3_NFIC{dimer}:-0.150813593537;ATF6:-0.153574029416;MYBL2:-0.167379310462;RFX2..5_RFXANK_RFXAP:-0.196839915718;ATF4:-0.204022907772;PAX3,7:-0.210683992222;EGR1..3:-0.213256678358;HNF1A:-0.225625512789;XBP1:-0.226579194543;ALX4:-0.235758690724;FOXP3:-0.237476678191;NR1H4:-0.26765478273;SOX17:-0.268119775413;MZF1:-0.285894840342;MEF2{A,B,C,D}:-0.305248671967;HIC1:-0.392738023359;RREB1:-0.402197210837;REST:-0.403348872688;GFI1:-0.413105484152;IKZF2:-0.413678441676;STAT5{A,B}:-0.416662886097;MTE{core}:-0.428936626685;ATF2:-0.439388967026;EN1,2:-0.439873935039;FOXP1:-0.441816669224;PATZ1:-0.450820199224;AHR_ARNT_ARNT2:-0.465813245287;ESRRA:-0.472461781683;MYFfamily:-0.488232429936;PBX1:-0.492779001981;IRF7:-0.502064699745;NFKB1_REL_RELA:-0.515586009133;ZNF423:-0.531142060197;OCT4_SOX2{dimer}:-0.544065162735;MYB:-0.544345641389;LMO2:-0.551722751539;RXR{A,B,G}:-0.567192279908;HNF4A_NR2F1,2:-0.56786226601;NHLH1,2:-0.569658788552;AR:-0.583388908689;SMAD1..7,9:-0.604592612466;SPI1:-0.631804884385;TFAP2B:-0.632819663431;NFY{A,B,C}:-0.640085499405;NR5A1,2:-0.640470001441;SOX2:-0.645190360297;DMAP1_NCOR{1,2}_SMARC:-0.647051799469;NKX6-1,2:-0.648671265025;ETS1,2:-0.659530491859;FOX{F1,F2,J1}:-0.675026056593;GTF2A1,2:-0.678899286012;PAX6:-0.687056912911;RBPJ:-0.701872123716;YY1:-0.702391808584;ELF1,2,4:-0.713281239517;CEBPA,B_DDIT3:-0.728137120872;CUX2:-0.74712544523;SOX{8,9,10}:-0.751337594089;ZFP161:-0.760406467288;HES1:-0.773419758489;PDX1:-0.778630261248;NANOG{mouse}:-0.787670486137;GFI1B:-0.789862897975;LHX3,4:-0.795500833026;IRF1,2:-0.809249125694;SPIB:-0.845155157739;RUNX1..3:-0.858924132209;GATA4:-0.886261001639;SRF:-0.919349607824;TFAP4:-0.930297596785;STAT2,4,6:-0.949780555859;TGIF1:-0.955424103992;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.986366454384;E2F1..5:-1.01337682704;NR6A1:-1.02698799803;TOPORS:-1.0314759649;MAFB:-1.05877844872;NFE2L2:-1.06512587115;PRDM1:-1.09496282954;TFDP1:-1.18474388378;BREu{core}:-1.19237128596;SPZ1:-1.21480286586;PRRX1,2:-1.22082045137;FOXD3:-1.23233405579;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27779591958;CDX1,2,4:-1.28804464076;T:-1.29391327354;TAL1_TCF{3,4,12}:-1.36707342871;NANOG:-1.44701866391;NFE2L1:-1.52787141609;NKX3-1:-1.63109746664;POU5F1:-1.72580579526;NFIX:-1.91133180355 | |top_motifs=FOXL1:2.31664437587;PAX4:2.19483939877;NKX2-1,4:2.12953346534;HAND1,2:2.02299095803;SNAI1..3:1.98896591685;HOX{A6,A7,B6,B7}:1.98704421016;EP300:1.9334910447;FOXM1:1.91994503774;ZEB1:1.77760281958;RORA:1.70825824866;NKX2-2,8:1.56722281265;CDC5L:1.5468868799;FOXO1,3,4:1.49823769421;FOXN1:1.46877515309;HIF1A:1.46276468348;XCPE1{core}:1.43037381255;ZNF148:1.29929070134;TEAD1:1.26659912725;AIRE:1.25855184483;FOX{I1,J2}:1.21039851511;POU6F1:1.20935148872;SP1:1.10166432227;HMGA1,2:1.05471077744;TEF:1.00983236428;ARID5B:0.987920395602;MAZ:0.940203042252;PPARG:0.920504335992;POU3F1..4:0.911340086924;TBX4,5:0.8987396591;GLI1..3:0.891614262353;FOS_FOS{B,L1}_JUN{B,D}:0.871473418347;TP53:0.854819703128;TLX2:0.774979251224;FOX{D1,D2}:0.751496389477;CRX:0.747160206813;PAX8:0.686288193013;TFAP2{A,C}:0.631026384335;PAX5:0.622039597351;MYOD1:0.612664509964;BACH2:0.606768144529;GCM1,2:0.597345902457;ONECUT1,2:0.595016274021;UFEwm:0.581638540584;ZNF384:0.559227623279;STAT1,3:0.502795232433;RXRA_VDR{dimer}:0.481861483377;IKZF1:0.479123304428;TBP:0.469838683651;ALX1:0.45980531434;HOX{A5,B5}:0.451455347093;ADNP_IRX_SIX_ZHX:0.438983736026;ZIC1..3:0.404971707214;POU1F1:0.400057119706;BPTF:0.374784592199;FOXQ1:0.361786212001;FOSL2:0.361736647448;FOXA2:0.358378515188;RFX1:0.318769144457;LEF1_TCF7_TCF7L1,2:0.316721383938;PAX1,9:0.306583477645;VSX1,2:0.305980777181;ZNF238:0.295692153516;CREB1:0.258044054323;HLF:0.25221005401;NFATC1..3:0.248665006526;NFIL3:0.244997051001;MTF1:0.237027176488;PITX1..3:0.216430016946;TFCP2:0.211465843433;ESR1:0.201497322947;NKX2-3_NKX2-5:0.190497247818;JUN:0.182515903093;MED-1{core}:0.178325007391;bHLH_family:0.176350066918;NR3C1:0.176283125338;DBP:0.175366395951;GTF2I:0.128024378998;HOXA9_MEIS1:0.105493969854;ZBTB6:0.101339138981;PAX2:0.0820453280066;HBP1_HMGB_SSRP1_UBTF:0.0673433472273;EVI1:0.0550102854654;HMX1:0.0117837373067;NRF1:0.0114859717235;EBF1:-0.00539253530439;HOX{A4,D4}:-0.0177746939063;SOX5:-0.0181870891671;ELK1,4_GABP{A,B1}:-0.0283591125945;GATA6:-0.0417042416454;GZF1:-0.0430442290473;NKX3-2:-0.047630160683;POU2F1..3:-0.0637146524054;ATF5_CREB3:-0.086858742427;ZNF143:-0.0917137290203;HSF1,2:-0.105571543355;KLF4:-0.107629122309;ZBTB16:-0.110008683164;NFE2:-0.123568015097;SREBF1,2:-0.141505968582;TLX1..3_NFIC{dimer}:-0.150813593537;ATF6:-0.153574029416;MYBL2:-0.167379310462;RFX2..5_RFXANK_RFXAP:-0.196839915718;ATF4:-0.204022907772;PAX3,7:-0.210683992222;EGR1..3:-0.213256678358;HNF1A:-0.225625512789;XBP1:-0.226579194543;ALX4:-0.235758690724;FOXP3:-0.237476678191;NR1H4:-0.26765478273;SOX17:-0.268119775413;MZF1:-0.285894840342;MEF2{A,B,C,D}:-0.305248671967;HIC1:-0.392738023359;RREB1:-0.402197210837;REST:-0.403348872688;GFI1:-0.413105484152;IKZF2:-0.413678441676;STAT5{A,B}:-0.416662886097;MTE{core}:-0.428936626685;ATF2:-0.439388967026;EN1,2:-0.439873935039;FOXP1:-0.441816669224;PATZ1:-0.450820199224;AHR_ARNT_ARNT2:-0.465813245287;ESRRA:-0.472461781683;MYFfamily:-0.488232429936;PBX1:-0.492779001981;IRF7:-0.502064699745;NFKB1_REL_RELA:-0.515586009133;ZNF423:-0.531142060197;OCT4_SOX2{dimer}:-0.544065162735;MYB:-0.544345641389;LMO2:-0.551722751539;RXR{A,B,G}:-0.567192279908;HNF4A_NR2F1,2:-0.56786226601;NHLH1,2:-0.569658788552;AR:-0.583388908689;SMAD1..7,9:-0.604592612466;SPI1:-0.631804884385;TFAP2B:-0.632819663431;NFY{A,B,C}:-0.640085499405;NR5A1,2:-0.640470001441;SOX2:-0.645190360297;DMAP1_NCOR{1,2}_SMARC:-0.647051799469;NKX6-1,2:-0.648671265025;ETS1,2:-0.659530491859;FOX{F1,F2,J1}:-0.675026056593;GTF2A1,2:-0.678899286012;PAX6:-0.687056912911;RBPJ:-0.701872123716;YY1:-0.702391808584;ELF1,2,4:-0.713281239517;CEBPA,B_DDIT3:-0.728137120872;CUX2:-0.74712544523;SOX{8,9,10}:-0.751337594089;ZFP161:-0.760406467288;HES1:-0.773419758489;PDX1:-0.778630261248;NANOG{mouse}:-0.787670486137;GFI1B:-0.789862897975;LHX3,4:-0.795500833026;IRF1,2:-0.809249125694;SPIB:-0.845155157739;RUNX1..3:-0.858924132209;GATA4:-0.886261001639;SRF:-0.919349607824;TFAP4:-0.930297596785;STAT2,4,6:-0.949780555859;TGIF1:-0.955424103992;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.986366454384;E2F1..5:-1.01337682704;NR6A1:-1.02698799803;TOPORS:-1.0314759649;MAFB:-1.05877844872;NFE2L2:-1.06512587115;PRDM1:-1.09496282954;TFDP1:-1.18474388378;BREu{core}:-1.19237128596;SPZ1:-1.21480286586;PRRX1,2:-1.22082045137;FOXD3:-1.23233405579;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27779591958;CDX1,2,4:-1.28804464076;T:-1.29391327354;TAL1_TCF{3,4,12}:-1.36707342871;NANOG:-1.44701866391;NFE2L1:-1.52787141609;NKX3-1:-1.63109746664;POU5F1:-1.72580579526;NFIX:-1.91133180355 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12237-129G5;search_select_hide=table117:FF:12237-129G5 | |||
}} | }} | ||
Latest revision as of 18:36, 4 June 2020
| Name: | amniotic membrane cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12379 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12379
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12379
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.482 |
| 10 | 10 | 0.43 |
| 100 | 100 | 0.496 |
| 101 | 101 | 0.52 |
| 102 | 102 | 0.628 |
| 103 | 103 | 0.0904 |
| 104 | 104 | 0.548 |
| 105 | 105 | 0.358 |
| 106 | 106 | 0.999 |
| 107 | 107 | 0.781 |
| 108 | 108 | 0.129 |
| 109 | 109 | 0.00101 |
| 11 | 11 | 0.779 |
| 110 | 110 | 0.19 |
| 111 | 111 | 0.422 |
| 112 | 112 | 0.989 |
| 113 | 113 | 5.26573e-4 |
| 114 | 114 | 0.496 |
| 115 | 115 | 0.909 |
| 116 | 116 | 0.0955 |
| 117 | 117 | 0.0149 |
| 118 | 118 | 0.00199 |
| 119 | 119 | 0.784 |
| 12 | 12 | 0.872 |
| 120 | 120 | 0.183 |
| 121 | 121 | 0.291 |
| 122 | 122 | 0.788 |
| 123 | 123 | 0.046 |
| 124 | 124 | 0.0398 |
| 125 | 125 | 0.973 |
| 126 | 126 | 0.683 |
| 127 | 127 | 0.934 |
| 128 | 128 | 0.402 |
| 129 | 129 | 0.317 |
| 13 | 13 | 0.41 |
| 130 | 130 | 0.112 |
| 131 | 131 | 0.0188 |
| 132 | 132 | 0.26 |
| 133 | 133 | 0.0123 |
| 134 | 134 | 0.0413 |
| 135 | 135 | 0.504 |
| 136 | 136 | 0.0132 |
| 137 | 137 | 0.217 |
| 138 | 138 | 0.871 |
| 139 | 139 | 0.405 |
| 14 | 14 | 0.933 |
| 140 | 140 | 0.177 |
| 141 | 141 | 0.653 |
| 142 | 142 | 0.783 |
| 143 | 143 | 0.254 |
| 144 | 144 | 0.615 |
| 145 | 145 | 0.569 |
| 146 | 146 | 0.202 |
| 147 | 147 | 0.984 |
| 148 | 148 | 0.43 |
| 149 | 149 | 0.382 |
| 15 | 15 | 0.789 |
| 150 | 150 | 0.766 |
| 151 | 151 | 0.108 |
| 152 | 152 | 0.0976 |
| 153 | 153 | 0.961 |
| 154 | 154 | 0.589 |
| 155 | 155 | 0.0167 |
| 156 | 156 | 0.204 |
| 157 | 157 | 0.564 |
| 158 | 158 | 0.17 |
| 159 | 159 | 0.858 |
| 16 | 16 | 0.0773 |
| 160 | 160 | 0.155 |
| 161 | 161 | 0.462 |
| 162 | 162 | 0.806 |
| 163 | 163 | 0.0819 |
| 164 | 164 | 0.124 |
| 165 | 165 | 0.345 |
| 166 | 166 | 0.79 |
| 167 | 167 | 0.894 |
| 168 | 168 | 0.617 |
| 169 | 169 | 0.02 |
| 17 | 17 | 0.423 |
| 18 | 18 | 0.809 |
| 19 | 19 | 0.678 |
| 2 | 2 | 0.207 |
| 20 | 20 | 0.215 |
| 21 | 21 | 0.244 |
| 22 | 22 | 0.0921 |
| 23 | 23 | 0.169 |
| 24 | 24 | 0.722 |
| 25 | 25 | 0.388 |
| 26 | 26 | 0.982 |
| 27 | 27 | 0.698 |
| 28 | 28 | 0.783 |
| 29 | 29 | 0.0817 |
| 3 | 3 | 0.262 |
| 30 | 30 | 0.252 |
| 31 | 31 | 0.928 |
| 32 | 32 | 0.906 |
| 33 | 33 | 0.526 |
| 34 | 34 | 0.0469 |
| 35 | 35 | 0.0468 |
| 36 | 36 | 0.0624 |
| 37 | 37 | 0.538 |
| 38 | 38 | 0.273 |
| 39 | 39 | 0.365 |
| 4 | 4 | 0.689 |
| 40 | 40 | 0.497 |
| 41 | 41 | 0.932 |
| 42 | 42 | 0.7 |
| 43 | 43 | 0.275 |
| 44 | 44 | 0.969 |
| 45 | 45 | 0.27 |
| 46 | 46 | 0.68 |
| 47 | 47 | 0.689 |
| 48 | 48 | 0.887 |
| 49 | 49 | 0.555 |
| 5 | 5 | 0.992 |
| 50 | 50 | 0.725 |
| 51 | 51 | 0.491 |
| 52 | 52 | 0.552 |
| 53 | 53 | 0.292 |
| 54 | 54 | 0.985 |
| 55 | 55 | 0.571 |
| 56 | 56 | 0.3 |
| 57 | 57 | 0.864 |
| 58 | 58 | 0.929 |
| 59 | 59 | 0.559 |
| 6 | 6 | 0.509 |
| 60 | 60 | 0.878 |
| 61 | 61 | 0.57 |
| 62 | 62 | 0.994 |
| 63 | 63 | 0.567 |
| 64 | 64 | 0.518 |
| 65 | 65 | 0.87 |
| 66 | 66 | 0.561 |
| 67 | 67 | 0.823 |
| 68 | 68 | 0.944 |
| 69 | 69 | 0.0667 |
| 7 | 7 | 0.588 |
| 70 | 70 | 0.0536 |
| 71 | 71 | 0.888 |
| 72 | 72 | 0.216 |
| 73 | 73 | 0.0813 |
| 74 | 74 | 0.131 |
| 75 | 75 | 0.042 |
| 76 | 76 | 0.406 |
| 77 | 77 | 0.212 |
| 78 | 78 | 0.523 |
| 79 | 79 | 0.8 |
| 8 | 8 | 0.572 |
| 80 | 80 | 0.497 |
| 81 | 81 | 0.771 |
| 82 | 82 | 0.979 |
| 83 | 83 | 0.978 |
| 84 | 84 | 0.31 |
| 85 | 85 | 0.0861 |
| 86 | 86 | 0.536 |
| 87 | 87 | 0.547 |
| 88 | 88 | 0.702 |
| 89 | 89 | 0.0865 |
| 9 | 9 | 0.945 |
| 90 | 90 | 0.583 |
| 91 | 91 | 0.302 |
| 92 | 92 | 0.966 |
| 93 | 93 | 0.528 |
| 94 | 94 | 0.879 |
| 95 | 95 | 0.464 |
| 96 | 96 | 0.425 |
| 97 | 97 | 0.143 |
| 98 | 98 | 0.387 |
| 99 | 99 | 0.641 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12379
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000010 human amniotic membrane cell- Amnion sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000010 (human amniotic membrane cell- Amnion sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
