FF:13311-142I8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005727 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008599;DRR009471;DRZ000896;DRZ002281;DRZ012246;DRZ013631 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000357,FF:0000086,FF:0000647,FF:0011215 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor= donor4 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:13311-142I8 | |id=FF:13311-142I8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011215 | ||
|name=Monocyte-derived macrophages response to udorn influenza infection | |is_obsolete= | ||
|library_id=CNhs13639 | |||
|library_id_phase_based=2:CNhs13639 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;13311 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13311 | |||
|name=Monocyte-derived macrophages response to udorn influenza infection | |||
|namespace= | |namespace= | ||
|part_of= | |part_of= | ||
| Line 44: | Line 64: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.567566904253485,0,0,0,0,0.814348266960493,0,0.922678153959787,0.204929587946497,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821343286698451,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.612581255824924,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.492528432668985,0,-0.0479813602647654,0,0.39553607142638,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.492528432668985,0,0,0,0,0.717394096417105,0,0,0,0,0.246264216334492,0,0,0,0,0,-0.552571649267773,0,0,0,0.0714042841044568,0.387558323387072,0,0,0.246264216334492,0,0.619358745179398,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.888640926973245,1.1188528726967,0,0,0,0,0,0 | |||
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| |||
|rna_box=142 | |rna_box=142 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=7.38 | |rna_weight_ug=7.38 | ||
|sample_age=adult | |sample_age=adult | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=Primary | |sample_cell_line=Primary | ||
| Line 69: | Line 93: | ||
|sample_ethnicity=Caucasian | |sample_ethnicity=Caucasian | ||
|sample_experimental_condition=Ud 0h | |sample_experimental_condition=Ud 0h | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.23590500596199e-270!GO:0005737;cytoplasm;2.77484599205304e-169!GO:0044444;cytoplasmic part;5.85398943204491e-137!GO:0043227;membrane-bound organelle;9.92487799838336e-115!GO:0043231;intracellular membrane-bound organelle;1.9017331752967e-114!GO:0043226;organelle;1.01323226741511e-102!GO:0043229;intracellular organelle;3.41852051083842e-102!GO:0044422;organelle part;7.89434556960326e-101!GO:0044446;intracellular organelle part;5.03523611274534e-99!GO:0032991;macromolecular complex;1.68021614979804e-77!GO:0005739;mitochondrion;9.8313812878883e-66!GO:0044237;cellular metabolic process;5.52287888688741e-65!GO:0044238;primary metabolic process;7.66252807204403e-61!GO:0030529;ribonucleoprotein complex;7.06723896335296e-59!GO:0031090;organelle membrane;3.28574832831723e-54!GO:0005515;protein binding;8.8164276504744e-52!GO:0009058;biosynthetic process;4.24016928490011e-51!GO:0003723;RNA binding;1.11592764436036e-49!GO:0019538;protein metabolic process;4.0123574855907e-49!GO:0043170;macromolecule metabolic process;1.82623086017276e-47!GO:0043233;organelle lumen;1.43606992097344e-46!GO:0031974;membrane-enclosed lumen;1.43606992097344e-46!GO:0044260;cellular macromolecule metabolic process;3.27783296340559e-46!GO:0044429;mitochondrial part;1.14963351583266e-45!GO:0006412;translation;4.81327484401396e-45!GO:0044267;cellular protein metabolic process;5.05252950719782e-45!GO:0044249;cellular biosynthetic process;7.70796745808005e-44!GO:0044428;nuclear part;6.70397463315366e-42!GO:0009059;macromolecule biosynthetic process;1.55717016944567e-41!GO:0043234;protein complex;1.82124695229343e-41!GO:0033036;macromolecule localization;6.73498826022465e-41!GO:0005829;cytosol;2.58277551343996e-40!GO:0015031;protein transport;1.14739800611325e-39!GO:0045184;establishment of protein localization;1.37325317598187e-39!GO:0008104;protein localization;3.95385165399411e-38!GO:0031967;organelle envelope;5.44203132002177e-38!GO:0031975;envelope;1.0972563430681e-37!GO:0005840;ribosome;3.09064590329271e-34!GO:0006396;RNA processing;1.35914218211376e-32!GO:0005740;mitochondrial envelope;3.07606498266676e-30!GO:0003735;structural constituent of ribosome;4.57652330422265e-30!GO:0031966;mitochondrial membrane;9.77377063288422e-29!GO:0016043;cellular component organization and biogenesis;4.51958933584187e-28!GO:0016071;mRNA metabolic process;1.24405719688402e-27!GO:0033279;ribosomal subunit;1.40484886728898e-27!GO:0046907;intracellular transport;2.15933508155056e-27!GO:0019866;organelle inner membrane;1.12278448856121e-26!GO:0006119;oxidative phosphorylation;1.91907160103176e-26!GO:0006886;intracellular protein transport;3.28903763273937e-26!GO:0005743;mitochondrial inner membrane;4.91996445751933e-25!GO:0008380;RNA splicing;8.81241959113153e-25!GO:0006397;mRNA processing;3.46864930957193e-24!GO:0031981;nuclear lumen;1.33332273813922e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.63455455827256e-23!GO:0065003;macromolecular complex assembly;4.40768942130724e-23!GO:0051186;cofactor metabolic process;5.27440061745415e-23!GO:0051649;establishment of cellular localization;4.59816992904446e-22!GO:0051641;cellular localization;1.93415250809311e-21!GO:0048770;pigment granule;3.45749383138879e-21!GO:0042470;melanosome;3.45749383138879e-21!GO:0012505;endomembrane system;3.54905661800234e-21!GO:0005634;nucleus;1.10662171681019e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.13499858856965e-20!GO:0005773;vacuole;5.15732975805756e-20!GO:0044455;mitochondrial membrane part;6.06280040702265e-20!GO:0022607;cellular component assembly;8.71784407164971e-20!GO:0044445;cytosolic part;9.25519371453168e-19!GO:0000323;lytic vacuole;1.06233988227012e-18!GO:0005764;lysosome;1.06233988227012e-18!GO:0044248;cellular catabolic process;1.24611991124445e-18!GO:0005681;spliceosome;1.80977743286043e-18!GO:0006732;coenzyme metabolic process;2.25581646662598e-18!GO:0031980;mitochondrial lumen;4.35086311397885e-18!GO:0005759;mitochondrial matrix;4.35086311397885e-18!GO:0006915;apoptosis;9.27201975421639e-18!GO:0012501;programmed cell death;9.27201975421639e-18!GO:0044265;cellular macromolecule catabolic process;1.15386017997634e-17!GO:0016192;vesicle-mediated transport;1.29144512620086e-17!GO:0005746;mitochondrial respiratory chain;2.13033907930286e-17!GO:0005783;endoplasmic reticulum;5.49401040000062e-17!GO:0000166;nucleotide binding;7.86002800588891e-17!GO:0008219;cell death;1.02167127192534e-16!GO:0016265;death;1.02167127192534e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.25189331506854e-16!GO:0006996;organelle organization and biogenesis;1.34828738198637e-16!GO:0022618;protein-RNA complex assembly;4.06434342242825e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.42583883937751e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;4.90909396007913e-16!GO:0016462;pyrophosphatase activity;5.62056022056058e-16!GO:0050136;NADH dehydrogenase (quinone) activity;9.07025223975974e-16!GO:0003954;NADH dehydrogenase activity;9.07025223975974e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.07025223975974e-16!GO:0005794;Golgi apparatus;1.10520009224372e-15!GO:0009057;macromolecule catabolic process;1.13630308065302e-15!GO:0044432;endoplasmic reticulum part;1.18834873530518e-15!GO:0017111;nucleoside-triphosphatase activity;1.71779011605732e-15!GO:0005654;nucleoplasm;4.40358111429717e-15!GO:0015935;small ribosomal subunit;5.89407226901184e-15!GO:0006457;protein folding;6.88363105971455e-15!GO:0043283;biopolymer metabolic process;9.61784249349589e-15!GO:0043285;biopolymer catabolic process;9.61784249349589e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.09674390275076e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.26241740877057e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.12733440428912e-14!GO:0042773;ATP synthesis coupled electron transport;3.12733440428912e-14!GO:0016787;hydrolase activity;5.74351126996868e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.88642838180978e-14!GO:0045271;respiratory chain complex I;6.88642838180978e-14!GO:0005747;mitochondrial respiratory chain complex I;6.88642838180978e-14!GO:0016874;ligase activity;7.15814947649311e-14!GO:0015934;large ribosomal subunit;1.1873425362181e-13!GO:0006605;protein targeting;1.88097890628306e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.27495533609324e-13!GO:0009055;electron carrier activity;2.7042115953987e-13!GO:0009056;catabolic process;2.75271461597316e-13!GO:0051188;cofactor biosynthetic process;4.33706347073676e-13!GO:0005789;endoplasmic reticulum membrane;5.02918002322434e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.26946205338833e-13!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.67031354952797e-13!GO:0009150;purine ribonucleotide metabolic process;7.85030012086141e-13!GO:0016491;oxidoreductase activity;8.06585168065419e-13!GO:0006259;DNA metabolic process;1.01501684350803e-12!GO:0006163;purine nucleotide metabolic process;1.06835221329676e-12!GO:0015078;hydrogen ion transmembrane transporter activity;1.10473675767492e-12!GO:0017076;purine nucleotide binding;1.18034978204965e-12!GO:0009259;ribonucleotide metabolic process;1.18666764582795e-12!GO:0009152;purine ribonucleotide biosynthetic process;1.66378375874863e-12!GO:0008135;translation factor activity, nucleic acid binding;1.89077033536456e-12!GO:0006164;purine nucleotide biosynthetic process;2.60372797282496e-12!GO:0010467;gene expression;3.06213792161369e-12!GO:0032553;ribonucleotide binding;3.08722237571159e-12!GO:0032555;purine ribonucleotide binding;3.08722237571159e-12!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.6642909238978e-12!GO:0009260;ribonucleotide biosynthetic process;5.85799362093373e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;6.88907729813175e-12!GO:0044257;cellular protein catabolic process;7.11234767144682e-12!GO:0006512;ubiquitin cycle;7.18398624970565e-12!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.28649439089997e-12!GO:0019941;modification-dependent protein catabolic process;1.12258032921268e-11!GO:0043632;modification-dependent macromolecule catabolic process;1.12258032921268e-11!GO:0051082;unfolded protein binding;1.21522069961943e-11!GO:0005761;mitochondrial ribosome;1.33863515859316e-11!GO:0000313;organellar ribosome;1.33863515859316e-11!GO:0006511;ubiquitin-dependent protein catabolic process;1.4469932083122e-11!GO:0008134;transcription factor binding;1.48298689447599e-11!GO:0006950;response to stress;1.97881432666171e-11!GO:0006413;translational initiation;2.04213796206556e-11!GO:0015986;ATP synthesis coupled proton transport;2.34506250493536e-11!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.34506250493536e-11!GO:0019829;cation-transporting ATPase activity;2.9711905846333e-11!GO:0043412;biopolymer modification;3.07885774739811e-11!GO:0030163;protein catabolic process;3.17395079212084e-11!GO:0048193;Golgi vesicle transport;3.21349676904062e-11!GO:0006446;regulation of translational initiation;3.42583235610289e-11!GO:0006091;generation of precursor metabolites and energy;3.48878267307347e-11!GO:0044451;nucleoplasm part;4.46195395284532e-11!GO:0042981;regulation of apoptosis;4.86323831541157e-11!GO:0005730;nucleolus;7.11586883924737e-11!GO:0043067;regulation of programmed cell death;7.65706358013129e-11!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.52274577290477e-11!GO:0016887;ATPase activity;9.58012065868412e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.2854717583414e-10!GO:0009108;coenzyme biosynthetic process;1.53751530560928e-10!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.63098183260346e-10!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.63098183260346e-10!GO:0009142;nucleoside triphosphate biosynthetic process;1.64146157583259e-10!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.64146157583259e-10!GO:0009199;ribonucleoside triphosphate metabolic process;1.82004573430674e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.85257498487292e-10!GO:0009144;purine nucleoside triphosphate metabolic process;1.85257498487292e-10!GO:0003743;translation initiation factor activity;1.85257498487292e-10!GO:0006464;protein modification process;2.19844822107927e-10!GO:0006913;nucleocytoplasmic transport;2.42428785355032e-10!GO:0042623;ATPase activity, coupled;2.91759349704327e-10!GO:0006754;ATP biosynthetic process;2.95821490578799e-10!GO:0006753;nucleoside phosphate metabolic process;2.95821490578799e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.16525537110279e-10!GO:0016469;proton-transporting two-sector ATPase complex;3.22299202524563e-10!GO:0051246;regulation of protein metabolic process;3.25812654064589e-10!GO:0043228;non-membrane-bound organelle;3.25891372920381e-10!GO:0043232;intracellular non-membrane-bound organelle;3.25891372920381e-10!GO:0009141;nucleoside triphosphate metabolic process;3.25891372920381e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.5118335828138e-10!GO:0051169;nuclear transport;4.15342171687417e-10!GO:0046034;ATP metabolic process;5.86409656016523e-10!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.16938930061506e-10!GO:0005768;endosome;8.4201107670354e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.95792732685097e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.19046068210804e-09!GO:0009060;aerobic respiration;2.17706449610298e-09!GO:0005774;vacuolar membrane;2.22722088794095e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;2.33071689232595e-09!GO:0000375;RNA splicing, via transesterification reactions;2.33071689232595e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.33071689232595e-09!GO:0030554;adenyl nucleotide binding;2.33922753677656e-09!GO:0016604;nuclear body;2.72742052933496e-09!GO:0043069;negative regulation of programmed cell death;4.34861142891582e-09!GO:0032559;adenyl ribonucleotide binding;4.8193502193457e-09!GO:0005524;ATP binding;5.02291479293419e-09!GO:0043066;negative regulation of apoptosis;5.74204850669504e-09!GO:0005635;nuclear envelope;6.81087285912979e-09!GO:0044437;vacuolar part;9.86294070071332e-09!GO:0044262;cellular carbohydrate metabolic process;1.11654475522314e-08!GO:0007243;protein kinase cascade;1.35676809828206e-08!GO:0009117;nucleotide metabolic process;1.65571181811753e-08!GO:0005793;ER-Golgi intermediate compartment;1.83356382204064e-08!GO:0043687;post-translational protein modification;1.9940625939492e-08!GO:0008565;protein transporter activity;2.09361199181309e-08!GO:0005765;lysosomal membrane;2.10629765059739e-08!GO:0006752;group transfer coenzyme metabolic process;2.42810196037908e-08!GO:0042254;ribosome biogenesis and assembly;2.62559952897007e-08!GO:0045333;cellular respiration;2.64092150452085e-08!GO:0009615;response to virus;5.73587170154142e-08!GO:0006916;anti-apoptosis;6.15575696643012e-08!GO:0044255;cellular lipid metabolic process;7.92316365279133e-08!GO:0006461;protein complex assembly;8.83531509150898e-08!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;9.45657325125422e-08!GO:0015399;primary active transmembrane transporter activity;9.45657325125422e-08!GO:0008639;small protein conjugating enzyme activity;1.20774816440171e-07!GO:0031982;vesicle;1.3149796102093e-07!GO:0005770;late endosome;1.329257579619e-07!GO:0006793;phosphorus metabolic process;1.35395739532354e-07!GO:0006796;phosphate metabolic process;1.35395739532354e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.45597020047142e-07!GO:0006974;response to DNA damage stimulus;1.52926536790733e-07!GO:0006417;regulation of translation;1.74704115206949e-07!GO:0006099;tricarboxylic acid cycle;1.86514076927402e-07!GO:0046356;acetyl-CoA catabolic process;1.86514076927402e-07!GO:0022890;inorganic cation transmembrane transporter activity;1.91468876996483e-07!GO:0051187;cofactor catabolic process;1.95177070294293e-07!GO:0004842;ubiquitin-protein ligase activity;2.24389435057763e-07!GO:0016607;nuclear speck;2.25232217939489e-07!GO:0007049;cell cycle;2.38702674803991e-07!GO:0017038;protein import;2.39757595625317e-07!GO:0006084;acetyl-CoA metabolic process;3.89753834469337e-07!GO:0065009;regulation of a molecular function;4.5500953256289e-07!GO:0003712;transcription cofactor activity;4.6862547792458e-07!GO:0043492;ATPase activity, coupled to movement of substances;5.36877556032191e-07!GO:0031988;membrane-bound vesicle;5.53386767830912e-07!GO:0044431;Golgi apparatus part;5.6670503165527e-07!GO:0019787;small conjugating protein ligase activity;5.68185762880265e-07!GO:0005975;carbohydrate metabolic process;6.18160418823366e-07!GO:0031410;cytoplasmic vesicle;6.26123072602396e-07!GO:0006818;hydrogen transport;6.37765013171262e-07!GO:0030120;vesicle coat;6.54586272727465e-07!GO:0030662;coated vesicle membrane;6.54586272727465e-07!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;6.69196753937775e-07!GO:0006888;ER to Golgi vesicle-mediated transport;7.94784568461827e-07!GO:0016310;phosphorylation;8.37886556602968e-07!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;8.45192703925631e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.51353329686685e-07!GO:0008654;phospholipid biosynthetic process;9.86334802822716e-07!GO:0016740;transferase activity;1.04438972575492e-06!GO:0015992;proton transport;1.04438972575492e-06!GO:0009109;coenzyme catabolic process;1.16157328945077e-06!GO:0044453;nuclear membrane part;1.20833813059009e-06!GO:0044440;endosomal part;1.39574612153197e-06!GO:0010008;endosome membrane;1.39574612153197e-06!GO:0048475;coated membrane;1.39574612153197e-06!GO:0030117;membrane coat;1.39574612153197e-06!GO:0016044;membrane organization and biogenesis;1.39574612153197e-06!GO:0019752;carboxylic acid metabolic process;1.41666062268621e-06!GO:0006629;lipid metabolic process;1.48404115164544e-06!GO:0048523;negative regulation of cellular process;1.54748374119285e-06!GO:0006082;organic acid metabolic process;1.64172395636366e-06!GO:0031326;regulation of cellular biosynthetic process;1.82936541470694e-06!GO:0007040;lysosome organization and biogenesis;1.84745423626051e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.85037514219267e-06!GO:0031252;leading edge;2.25882531484834e-06!GO:0009889;regulation of biosynthetic process;2.27211670498172e-06!GO:0009165;nucleotide biosynthetic process;2.31464121884083e-06!GO:0008610;lipid biosynthetic process;2.71395721457139e-06!GO:0045259;proton-transporting ATP synthase complex;2.75809377317018e-06!GO:0031965;nuclear membrane;3.15665914180153e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.20202532823493e-06!GO:0004298;threonine endopeptidase activity;4.40449042064251e-06!GO:0007033;vacuole organization and biogenesis;4.87668171345746e-06!GO:0009719;response to endogenous stimulus;6.92111983637438e-06!GO:0016881;acid-amino acid ligase activity;7.3168124137264e-06!GO:0007005;mitochondrion organization and biogenesis;7.31689648293018e-06!GO:0051170;nuclear import;8.14335371254335e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;8.19160642545161e-06!GO:0048519;negative regulation of biological process;9.06071377199922e-06!GO:0009967;positive regulation of signal transduction;9.21335107097354e-06!GO:0007242;intracellular signaling cascade;9.30557086449884e-06!GO:0005798;Golgi-associated vesicle;1.0075613521552e-05!GO:0006281;DNA repair;1.07174009948762e-05!GO:0006118;electron transport;1.24109163939487e-05!GO:0006606;protein import into nucleus;1.38147963101052e-05!GO:0000074;regulation of progression through cell cycle;1.52251565498056e-05!GO:0051726;regulation of cell cycle;1.63366147959278e-05!GO:0006643;membrane lipid metabolic process;1.81916109904933e-05!GO:0006364;rRNA processing;1.90891950737409e-05!GO:0006323;DNA packaging;1.96024263558691e-05!GO:0050657;nucleic acid transport;2.00012956684022e-05!GO:0051236;establishment of RNA localization;2.00012956684022e-05!GO:0050658;RNA transport;2.00012956684022e-05!GO:0016072;rRNA metabolic process;2.04096461156164e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.31389721853476e-05!GO:0006399;tRNA metabolic process;2.42547717297428e-05!GO:0005643;nuclear pore;2.51868969802749e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.5252693890049e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.5252693890049e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.5252693890049e-05!GO:0005525;GTP binding;2.55183594539884e-05!GO:0019899;enzyme binding;2.7326203120855e-05!GO:0000139;Golgi membrane;2.75277663493417e-05!GO:0032446;protein modification by small protein conjugation;2.81204832136109e-05!GO:0006403;RNA localization;3.08817172015347e-05!GO:0016567;protein ubiquitination;3.20339187676118e-05!GO:0006613;cotranslational protein targeting to membrane;3.54785317898857e-05!GO:0043038;amino acid activation;4.03703548223147e-05!GO:0006418;tRNA aminoacylation for protein translation;4.03703548223147e-05!GO:0043039;tRNA aminoacylation;4.03703548223147e-05!GO:0008026;ATP-dependent helicase activity;4.33405526172498e-05!GO:0032940;secretion by cell;4.58534048023089e-05!GO:0065002;intracellular protein transport across a membrane;4.67021347313008e-05!GO:0046519;sphingoid metabolic process;5.13551277872168e-05!GO:0004386;helicase activity;5.70223332709731e-05!GO:0006672;ceramide metabolic process;5.72579846277299e-05!GO:0046930;pore complex;6.64240688098938e-05!GO:0000151;ubiquitin ligase complex;6.7257776856915e-05!GO:0008047;enzyme activator activity;6.93945655473327e-05!GO:0022402;cell cycle process;7.48675172686766e-05!GO:0046474;glycerophospholipid biosynthetic process;7.7330046005739e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.01744510401393e-05!GO:0050790;regulation of catalytic activity;8.57182211463323e-05!GO:0005741;mitochondrial outer membrane;9.73530495022561e-05!GO:0005694;chromosome;9.95389395396253e-05!GO:0006333;chromatin assembly or disassembly;0.000109626404989952!GO:0019867;outer membrane;0.000109626404989952!GO:0015980;energy derivation by oxidation of organic compounds;0.000109626404989952!GO:0045454;cell redox homeostasis;0.000113109867800758!GO:0002376;immune system process;0.000118713960886991!GO:0048522;positive regulation of cellular process;0.000122264652184759!GO:0051276;chromosome organization and biogenesis;0.000122533843786919!GO:0003924;GTPase activity;0.000127623931758839!GO:0003724;RNA helicase activity;0.000132880313153809!GO:0003697;single-stranded DNA binding;0.000148490181136027!GO:0031902;late endosome membrane;0.000156771844963831!GO:0005885;Arp2/3 protein complex;0.000164458684775154!GO:0031968;organelle outer membrane;0.000165392058598451!GO:0043566;structure-specific DNA binding;0.000169098684195461!GO:0016568;chromatin modification;0.000181566093759824!GO:0006650;glycerophospholipid metabolic process;0.000184982068019831!GO:0046483;heterocycle metabolic process;0.000196521579778027!GO:0046467;membrane lipid biosynthetic process;0.000206395477656526!GO:0006897;endocytosis;0.000208760530892813!GO:0010324;membrane invagination;0.000208760530892813!GO:0009607;response to biotic stimulus;0.000209524427525136!GO:0000245;spliceosome assembly;0.000211338312503724!GO:0000785;chromatin;0.00024990545434769!GO:0032561;guanyl ribonucleotide binding;0.0002525158555872!GO:0019001;guanyl nucleotide binding;0.0002525158555872!GO:0051028;mRNA transport;0.000263973551259832!GO:0001726;ruffle;0.000276228585396606!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00030121490367905!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000307243769464718!GO:0045045;secretory pathway;0.000307736634590471!GO:0044427;chromosomal part;0.000313173595574369!GO:0003713;transcription coactivator activity;0.000379394076261263!GO:0019318;hexose metabolic process;0.000462926517907462!GO:0006612;protein targeting to membrane;0.000473615273197295!GO:0005762;mitochondrial large ribosomal subunit;0.000479767200130789!GO:0000315;organellar large ribosomal subunit;0.000479767200130789!GO:0000278;mitotic cell cycle;0.000521086838144055!GO:0005769;early endosome;0.000530790476882736!GO:0007264;small GTPase mediated signal transduction;0.000545590821960537!GO:0043021;ribonucleoprotein binding;0.000558227820299633!GO:0006644;phospholipid metabolic process;0.000573811584962936!GO:0045786;negative regulation of progression through cell cycle;0.000573811584962936!GO:0006954;inflammatory response;0.000578916341561341!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000595976544486108!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000659409671528577!GO:0048518;positive regulation of biological process;0.000663114733258859!GO:0007034;vacuolar transport;0.00068047835279872!GO:0006066;alcohol metabolic process;0.000709142119346157!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000709142119346157!GO:0046489;phosphoinositide biosynthetic process;0.000748699836390997!GO:0033116;ER-Golgi intermediate compartment membrane;0.000762052525983184!GO:0004197;cysteine-type endopeptidase activity;0.000821817816633979!GO:0043065;positive regulation of apoptosis;0.000858060637929502!GO:0032787;monocarboxylic acid metabolic process;0.00088496183932226!GO:0005996;monosaccharide metabolic process;0.000932203295628025!GO:0006767;water-soluble vitamin metabolic process;0.000965851129797156!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00097011516916654!GO:0006778;porphyrin metabolic process;0.0010102102401268!GO:0033013;tetrapyrrole metabolic process;0.0010102102401268!GO:0051168;nuclear export;0.00112934816422193!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00115482820694539!GO:0043068;positive regulation of programmed cell death;0.00116943102682395!GO:0050662;coenzyme binding;0.00122000461883062!GO:0030027;lamellipodium;0.001237789935993!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00129034968342004!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00129034968342004!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00129034968342004!GO:0016779;nucleotidyltransferase activity;0.00133386243110716!GO:0015036;disulfide oxidoreductase activity;0.00133991790448527!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00134468654432417!GO:0016853;isomerase activity;0.00138819807524622!GO:0000314;organellar small ribosomal subunit;0.00141400589514484!GO:0005763;mitochondrial small ribosomal subunit;0.00141400589514484!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0014949427346287!GO:0006955;immune response;0.00151582859795888!GO:0008186;RNA-dependent ATPase activity;0.0015489922535708!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00156153614364994!GO:0015002;heme-copper terminal oxidase activity;0.00156153614364994!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00156153614364994!GO:0004129;cytochrome-c oxidase activity;0.00156153614364994!GO:0022415;viral reproductive process;0.00157062498981673!GO:0065004;protein-DNA complex assembly;0.00162801782109375!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00163891763420773!GO:0016197;endosome transport;0.00173495990156878!GO:0030658;transport vesicle membrane;0.00174821164273818!GO:0003714;transcription corepressor activity;0.00175582811076847!GO:0051336;regulation of hydrolase activity;0.00188130766001533!GO:0030176;integral to endoplasmic reticulum membrane;0.00196742917583448!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00197559529662315!GO:0008632;apoptotic program;0.00201671016978911!GO:0007006;mitochondrial membrane organization and biogenesis;0.00204079666324816!GO:0030384;phosphoinositide metabolic process;0.00206166301061664!GO:0003729;mRNA binding;0.00212698454875716!GO:0006401;RNA catabolic process;0.00213462312960802!GO:0051427;hormone receptor binding;0.00229042279410526!GO:0006414;translational elongation;0.00231814706429537!GO:0051789;response to protein stimulus;0.00242773336835959!GO:0006986;response to unfolded protein;0.00242773336835959!GO:0005788;endoplasmic reticulum lumen;0.00243474412664317!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00245815934977982!GO:0006891;intra-Golgi vesicle-mediated transport;0.00253685454188891!GO:0016126;sterol biosynthetic process;0.0026093861026407!GO:0030149;sphingolipid catabolic process;0.00272282999773679!GO:0005096;GTPase activator activity;0.00275078239078261!GO:0019377;glycolipid catabolic process;0.00275687307656666!GO:0016564;transcription repressor activity;0.00278007172515972!GO:0006733;oxidoreduction coenzyme metabolic process;0.00289426489037358!GO:0030867;rough endoplasmic reticulum membrane;0.0029214392014321!GO:0042168;heme metabolic process;0.00295605722901849!GO:0006366;transcription from RNA polymerase II promoter;0.00326454466534861!GO:0006917;induction of apoptosis;0.00327118814778453!GO:0006260;DNA replication;0.00341612733139731!GO:0044275;cellular carbohydrate catabolic process;0.00341612733139731!GO:0006749;glutathione metabolic process;0.00342024986777669!GO:0030036;actin cytoskeleton organization and biogenesis;0.0034428981889581!GO:0006807;nitrogen compound metabolic process;0.00350755597254523!GO:0006334;nucleosome assembly;0.00367292858965575!GO:0030984;kininogen binding;0.00367292858965575!GO:0004213;cathepsin B activity;0.00367292858965575!GO:0006007;glucose catabolic process;0.00377287919693439!GO:0008234;cysteine-type peptidase activity;0.0039618856052907!GO:0030660;Golgi-associated vesicle membrane;0.00404397026892405!GO:0035257;nuclear hormone receptor binding;0.00406485639106713!GO:0043623;cellular protein complex assembly;0.00411823519151291!GO:0004004;ATP-dependent RNA helicase activity;0.00411823519151291!GO:0006006;glucose metabolic process;0.00417689897478862!GO:0012502;induction of programmed cell death;0.00417788347721631!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00430922891741731!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00430922891741731!GO:0006979;response to oxidative stress;0.00432728652102268!GO:0048468;cell development;0.00452639174751921!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.00454310609873292!GO:0016125;sterol metabolic process;0.0045589016343614!GO:0051920;peroxiredoxin activity;0.00464350923414951!GO:0007265;Ras protein signal transduction;0.00473799167017448!GO:0000287;magnesium ion binding;0.00481548703544005!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00486896913735968!GO:0030663;COPI coated vesicle membrane;0.00492911454561537!GO:0030126;COPI vesicle coat;0.00492911454561537!GO:0006790;sulfur metabolic process;0.00505790898024529!GO:0030133;transport vesicle;0.00514383168485475!GO:0004229;gelatinase B activity;0.00519768748790746!GO:0031497;chromatin assembly;0.00521937377898522!GO:0048471;perinuclear region of cytoplasm;0.00537123483621789!GO:0006631;fatty acid metabolic process;0.00543611003821002!GO:0004177;aminopeptidase activity;0.00556071946178858!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00572640773924668!GO:0006779;porphyrin biosynthetic process;0.00578652134740535!GO:0033014;tetrapyrrole biosynthetic process;0.00578652134740535!GO:0043681;protein import into mitochondrion;0.00579529825060467!GO:0046822;regulation of nucleocytoplasmic transport;0.00580275072616819!GO:0007041;lysosomal transport;0.00580830998698416!GO:0016563;transcription activator activity;0.00589181411776518!GO:0006402;mRNA catabolic process;0.00589540575440885!GO:0000096;sulfur amino acid metabolic process;0.00616918681286036!GO:0051287;NAD binding;0.00664251289093908!GO:0002252;immune effector process;0.00670761685173295!GO:0005813;centrosome;0.00707255980686315!GO:0042802;identical protein binding;0.00707255980686315!GO:0048487;beta-tubulin binding;0.00729443246677721!GO:0030118;clathrin coat;0.00738042588913044!GO:0046479;glycosphingolipid catabolic process;0.00757033324772515!GO:0048500;signal recognition particle;0.00771777289021172!GO:0030137;COPI-coated vesicle;0.00776988507675507!GO:0048037;cofactor binding;0.00784847680310453!GO:0017166;vinculin binding;0.00819082417325872!GO:0006665;sphingolipid metabolic process;0.00840776645361813!GO:0019058;viral infectious cycle;0.00885334027568861!GO:0042158;lipoprotein biosynthetic process;0.00895207312114592!GO:0003899;DNA-directed RNA polymerase activity;0.00918341203026207!GO:0019079;viral genome replication;0.00920143697458084!GO:0005083;small GTPase regulator activity;0.00962457443933048!GO:0006497;protein amino acid lipidation;0.00985375097714165!GO:0030099;myeloid cell differentiation;0.0101011833485832!GO:0006509;membrane protein ectodomain proteolysis;0.0103594288415454!GO:0033619;membrane protein proteolysis;0.0103594288415454!GO:0051707;response to other organism;0.0105485143221655!GO:0030029;actin filament-based process;0.0105545027690828!GO:0030134;ER to Golgi transport vesicle;0.010838192431074!GO:0005905;coated pit;0.0115197004807467!GO:0006626;protein targeting to mitochondrion;0.011965870771566!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0119833000817664!GO:0043087;regulation of GTPase activity;0.0119833000817664!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0119833000817664!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0119833000817664!GO:0009126;purine nucleoside monophosphate metabolic process;0.0119833000817664!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0119833000817664!GO:0009308;amine metabolic process;0.0119833000817664!GO:0007162;negative regulation of cell adhesion;0.0119919070361403!GO:0030503;regulation of cell redox homeostasis;0.0120616908812213!GO:0051540;metal cluster binding;0.0121601857083032!GO:0051536;iron-sulfur cluster binding;0.0121601857083032!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0122333290340745!GO:0006508;proteolysis;0.0123664809529021!GO:0004185;serine carboxypeptidase activity;0.0131733644509806!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0134545921993455!GO:0045047;protein targeting to ER;0.0134545921993455!GO:0019362;pyridine nucleotide metabolic process;0.0137075008161081!GO:0006506;GPI anchor biosynthetic process;0.013925655497788!GO:0030119;AP-type membrane coat adaptor complex;0.014670792135874!GO:0016798;hydrolase activity, acting on glycosyl bonds;0.0147567708301776!GO:0051452;cellular pH reduction;0.0150606864300884!GO:0051453;regulation of cellular pH;0.0150606864300884!GO:0045851;pH reduction;0.0150606864300884!GO:0046983;protein dimerization activity;0.0151058437126379!GO:0030041;actin filament polymerization;0.0152696606635084!GO:0031072;heat shock protein binding;0.0152873811524876!GO:0006695;cholesterol biosynthetic process;0.0153136922160191!GO:0000087;M phase of mitotic cell cycle;0.0154561707919742!GO:0006516;glycoprotein catabolic process;0.0155093174928327!GO:0048002;antigen processing and presentation of peptide antigen;0.0160306007465652!GO:0009100;glycoprotein metabolic process;0.0160955872570718!GO:0003690;double-stranded DNA binding;0.0162524169001534!GO:0042613;MHC class II protein complex;0.0165324817930014!GO:0000209;protein polyubiquitination;0.0165324817930014!GO:0030127;COPII vesicle coat;0.016663246228601!GO:0012507;ER to Golgi transport vesicle membrane;0.016663246228601!GO:0006518;peptide metabolic process;0.016813697802103!GO:0006783;heme biosynthetic process;0.0168481889685018!GO:0019843;rRNA binding;0.016903201159485!GO:0046365;monosaccharide catabolic process;0.0172991757779841!GO:0007067;mitosis;0.0174160289788822!GO:0004192;cathepsin D activity;0.0174573161707866!GO:0006914;autophagy;0.0175496076301359!GO:0051092;activation of NF-kappaB transcription factor;0.0175644453035108!GO:0046456;icosanoid biosynthetic process;0.017598619958205!GO:0008637;apoptotic mitochondrial changes;0.0177212887228433!GO:0006383;transcription from RNA polymerase III promoter;0.0178346406712727!GO:0005815;microtubule organizing center;0.0179983118403558!GO:0015631;tubulin binding;0.0180478106431911!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0180478106431911!GO:0010257;NADH dehydrogenase complex assembly;0.0180478106431911!GO:0033108;mitochondrial respiratory chain complex assembly;0.0180478106431911!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0182974706477324!GO:0009966;regulation of signal transduction;0.0183822630332038!GO:0006740;NADPH regeneration;0.0183958381729499!GO:0006098;pentose-phosphate shunt;0.0183958381729499!GO:0005637;nuclear inner membrane;0.0186384501136391!GO:0030125;clathrin vesicle coat;0.0189035110259145!GO:0030665;clathrin coated vesicle membrane;0.0189035110259145!GO:0048146;positive regulation of fibroblast proliferation;0.0190447537580451!GO:0044452;nucleolar part;0.0195684029179631!GO:0005791;rough endoplasmic reticulum;0.0198321589432422!GO:0046164;alcohol catabolic process;0.0202050382411409!GO:0008312;7S RNA binding;0.0204641964874696!GO:0005099;Ras GTPase activator activity;0.0204699501962866!GO:0043488;regulation of mRNA stability;0.0205012817060791!GO:0043487;regulation of RNA stability;0.0205012817060791!GO:0003676;nucleic acid binding;0.0206279003474382!GO:0035035;histone acetyltransferase binding;0.0206744866421432!GO:0006769;nicotinamide metabolic process;0.0207069430765465!GO:0031901;early endosome membrane;0.0217269551782136!GO:0051090;regulation of transcription factor activity;0.0217522163755861!GO:0008203;cholesterol metabolic process;0.0217522163755861!GO:0051252;regulation of RNA metabolic process;0.0217522163755861!GO:0004553;hydrolase activity, hydrolyzing O-glycosyl compounds;0.0217522163755861!GO:0043284;biopolymer biosynthetic process;0.0217522163755861!GO:0033033;negative regulation of myeloid cell apoptosis;0.0217522163755861!GO:0001803;regulation of type III hypersensitivity;0.0217522163755861!GO:0032733;positive regulation of interleukin-10 production;0.0217522163755861!GO:0033025;regulation of mast cell apoptosis;0.0217522163755861!GO:0001805;positive regulation of type III hypersensitivity;0.0217522163755861!GO:0033023;mast cell homeostasis;0.0217522163755861!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.0217522163755861!GO:0033032;regulation of myeloid cell apoptosis;0.0217522163755861!GO:0001802;type III hypersensitivity;0.0217522163755861!GO:0033028;myeloid cell apoptosis;0.0217522163755861!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.0217522163755861!GO:0033026;negative regulation of mast cell apoptosis;0.0217522163755861!GO:0033024;mast cell apoptosis;0.0217522163755861!GO:0003725;double-stranded RNA binding;0.0219033655826028!GO:0030132;clathrin coat of coated pit;0.0220934562626547!GO:0016408;C-acyltransferase activity;0.0221431726521956!GO:0002443;leukocyte mediated immunity;0.0224363260201156!GO:0002444;myeloid leukocyte mediated immunity;0.022452009753527!GO:0030131;clathrin adaptor complex;0.0224834141859338!GO:0005048;signal sequence binding;0.0224834141859338!GO:0006595;polyamine metabolic process;0.0224986793183439!GO:0050749;apolipoprotein E receptor binding;0.0228580336323307!GO:0019320;hexose catabolic process;0.0229841740340554!GO:0046466;membrane lipid catabolic process;0.0234377820581691!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0235218482148122!GO:0009161;ribonucleoside monophosphate metabolic process;0.0236641811142403!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0236641811142403!GO:0019904;protein domain specific binding;0.0236641811142403!GO:0009110;vitamin biosynthetic process;0.0236641811142403!GO:0051219;phosphoprotein binding;0.0237354378841386!GO:0007050;cell cycle arrest;0.0240143003975937!GO:0006689;ganglioside catabolic process;0.0245930183744979!GO:0000786;nucleosome;0.0248342776746258!GO:0016859;cis-trans isomerase activity;0.0249339033111629!GO:0032428;beta-N-acetylgalactosaminidase activity;0.0249339033111629!GO:0030290;sphingolipid activator protein activity;0.0249339033111629!GO:0006839;mitochondrial transport;0.0256755206756545!GO:0051223;regulation of protein transport;0.0259468840985398!GO:0015035;protein disulfide oxidoreductase activity;0.0262530505192564!GO:0051539;4 iron, 4 sulfur cluster binding;0.0262593054645571!GO:0030695;GTPase regulator activity;0.0262650857267071!GO:0006633;fatty acid biosynthetic process;0.026408307602517!GO:0002274;myeloid leukocyte activation;0.026514230668492!GO:0001816;cytokine production;0.0268001132938654!GO:0002440;production of molecular mediator of immune response;0.0269731137961543!GO:0005657;replication fork;0.0271687227337401!GO:0016363;nuclear matrix;0.0272732422242772!GO:0045309;protein phosphorylated amino acid binding;0.0275012662644475!GO:0051881;regulation of mitochondrial membrane potential;0.0278391970648617!GO:0043022;ribosome binding;0.0278941764933187!GO:0009124;nucleoside monophosphate biosynthetic process;0.0279827299791145!GO:0009123;nucleoside monophosphate metabolic process;0.0279827299791145!GO:0006622;protein targeting to lysosome;0.0279827299791145!GO:0048144;fibroblast proliferation;0.0280021475740339!GO:0048145;regulation of fibroblast proliferation;0.0280021475740339!GO:0001784;phosphotyrosine binding;0.0280520856351845!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0281977833153287!GO:0005684;U2-dependent spliceosome;0.0284637516627407!GO:0050811;GABA receptor binding;0.0286380065564452!GO:0035258;steroid hormone receptor binding;0.029123611773682!GO:0006611;protein export from nucleus;0.0292156875903682!GO:0016860;intramolecular oxidoreductase activity;0.0293924844453024!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0295248766064048!GO:0051087;chaperone binding;0.0295792254978062!GO:0008250;oligosaccharyl transferase complex;0.0297692015452051!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0298617955872302!GO:0022406;membrane docking;0.0299426122071673!GO:0048278;vesicle docking;0.0299426122071673!GO:0004576;oligosaccharyl transferase activity;0.0300437569776278!GO:0000303;response to superoxide;0.0300437569776278!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0303295639856012!GO:0032763;regulation of mast cell cytokine production;0.0307462533857615!GO:0032762;mast cell cytokine production;0.0307462533857615!GO:0006505;GPI anchor metabolic process;0.0316930466384251!GO:0008139;nuclear localization sequence binding;0.0316930466384251!GO:0006520;amino acid metabolic process;0.0320108552884143!GO:0005869;dynactin complex;0.0325324585566757!GO:0042364;water-soluble vitamin biosynthetic process;0.0328919009082561!GO:0030145;manganese ion binding;0.0329558939364657!GO:0051098;regulation of binding;0.0332351041451291!GO:0016052;carbohydrate catabolic process;0.0335448017187834!GO:0030508;thiol-disulfide exchange intermediate activity;0.0339391435659719!GO:0042987;amyloid precursor protein catabolic process;0.034567810382507!GO:0005758;mitochondrial intermembrane space;0.034567810382507!GO:0006458;'de novo' protein folding;0.034567810382507!GO:0051084;'de novo' posttranslational protein folding;0.034567810382507!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0345924125308994!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0351210038331607!GO:0006607;NLS-bearing substrate import into nucleus;0.0358501361320137!GO:0042157;lipoprotein metabolic process;0.0360997654306634!GO:0004448;isocitrate dehydrogenase activity;0.036173964473792!GO:0006465;signal peptide processing;0.036280013932094!GO:0006904;vesicle docking during exocytosis;0.036280013932094!GO:0005777;peroxisome;0.0363032612219153!GO:0042579;microbody;0.0363032612219153!GO:0022403;cell cycle phase;0.0363667071729896!GO:0043621;protein self-association;0.0364511420671793!GO:0030518;steroid hormone receptor signaling pathway;0.0365308817830214!GO:0046394;carboxylic acid biosynthetic process;0.0367585130948226!GO:0016053;organic acid biosynthetic process;0.0367585130948226!GO:0031324;negative regulation of cellular metabolic process;0.0371576118495738!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0371576118495738!GO:0006739;NADP metabolic process;0.0371644063953742!GO:0051101;regulation of DNA binding;0.0373276877738849!GO:0006766;vitamin metabolic process;0.0374049680616899!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0375452693604988!GO:0008383;manganese superoxide dismutase activity;0.0376898979892367!GO:0001315;age-dependent response to reactive oxygen species;0.0376898979892367!GO:0005832;chaperonin-containing T-complex;0.0378322925658674!GO:0000339;RNA cap binding;0.0382983958737104!GO:0004218;cathepsin S activity;0.0385342379346581!GO:0043130;ubiquitin binding;0.0388020630667717!GO:0032182;small conjugating protein binding;0.0388020630667717!GO:0006096;glycolysis;0.0390249033955448!GO:0006635;fatty acid beta-oxidation;0.0390263586350668!GO:0000049;tRNA binding;0.0400756991512622!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0400861809011187!GO:0042585;germinal vesicle;0.0403313819028755!GO:0016272;prefoldin complex;0.0406948921030164!GO:0051329;interphase of mitotic cell cycle;0.041189360115877!GO:0043433;negative regulation of transcription factor activity;0.0415572347429013!GO:0005784;translocon complex;0.0417898207140512!GO:0030659;cytoplasmic vesicle membrane;0.04216123884024!GO:0031625;ubiquitin protein ligase binding;0.0439448447351118!GO:0001573;ganglioside metabolic process;0.044124280311145!GO:0031970;organelle envelope lumen;0.0447555073169351!GO:0000305;response to oxygen radical;0.0448023554801616!GO:0030031;cell projection biogenesis;0.0464157015440461!GO:0019747;regulation of isoprenoid metabolic process;0.0464157015440461!GO:0004563;beta-N-acetylhexosaminidase activity;0.0466469592888274!GO:0033157;regulation of intracellular protein transport;0.046861849391606!GO:0042306;regulation of protein import into nucleus;0.046861849391606!GO:0030140;trans-Golgi network transport vesicle;0.0477948799858484!GO:0006081;aldehyde metabolic process;0.0478181597283143!GO:0018193;peptidyl-amino acid modification;0.0478181597283143!GO:0006487;protein amino acid N-linked glycosylation;0.048303050746361!GO:0008415;acyltransferase activity;0.0483227363419896!GO:0030880;RNA polymerase complex;0.0487711744342527!GO:0000059;protein import into nucleus, docking;0.0491585402514164!GO:0004674;protein serine/threonine kinase activity;0.0495705256794227!GO:0030913;paranodal junction assembly;0.049838585722657!GO:0032288;myelin formation;0.049838585722657 | |||
|sample_id=13311 | |sample_id=13311 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 100: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|time= 00hr00min | |||
|timecourse=Macrophage_influenza_infection | |||
|top_motifs=FOXD3:3.15540205872;ZBTB16:2.59706452834;NR6A1:2.36501794405;NKX2-2,8:2.11143991394;IKZF2:2.08071453754;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.93450736268;PAX4:1.93422413796;SREBF1,2:1.9286666472;HMGA1,2:1.8161173736;CDX1,2,4:1.74922781436;ARID5B:1.70458148137;DMAP1_NCOR{1,2}_SMARC:1.65312564102;RXRA_VDR{dimer}:1.57428391593;EN1,2:1.46759089499;UFEwm:1.33089315246;HMX1:1.31540137812;TLX2:1.2515901984;OCT4_SOX2{dimer}:1.22836677869;FOXP3:1.22538714676;NKX6-1,2:1.14511195029;ESR1:1.10344758304;NKX3-1:0.979864103927;NANOG{mouse}:0.945486400086;SPIB:0.919633722711;GATA4:0.914230163058;ALX1:0.840551540736;SPI1:0.820262168825;GLI1..3:0.819501177332;NKX3-2:0.760721058268;NFE2L1:0.747280076477;PAX1,9:0.731105398885;IRF7:0.709660417045;NFIL3:0.666947694843;ESRRA:0.651123737757;IRF1,2:0.608918951302;LHX3,4:0.5964000509;PITX1..3:0.579457445888;KLF4:0.561551354573;MYOD1:0.526692736353;NFE2L2:0.51723339662;HNF4A_NR2F1,2:0.486780925718;PAX8:0.480514340486;SPZ1:0.432984689678;HAND1,2:0.393681710363;POU1F1:0.381983045175;TFAP4:0.292631152138;SMAD1..7,9:0.289712830303;EVI1:0.269734880536;TFCP2:0.258549673906;ETS1,2:0.250529846461;HLF:0.241738659433;PDX1:0.237778166487;TGIF1:0.237178455651;NR1H4:0.229008835468;RUNX1..3:0.19805500134;POU5F1:0.185533745597;HOX{A4,D4}:0.182362164103;PAX2:0.169553483872;POU3F1..4:0.165997255059;CEBPA,B_DDIT3:0.141940675351;TOPORS:0.125641807328;FOX{F1,F2,J1}:0.104300272948;FOXO1,3,4:0.094712409722;PRDM1:0.0763254610231;HOXA9_MEIS1:0.0605601931529;FOXM1:0.0541865158484;EBF1:0.0523184578789;TEF:0.00658753393203;NFKB1_REL_RELA:-0.0090494139725;STAT2,4,6:-0.0359037641942;AR:-0.0420147320858;NKX2-3_NKX2-5:-0.0437698361025;FOXQ1:-0.0556956816051;EP300:-0.0609715812893;TBP:-0.0984581111006;PPARG:-0.109002602661;ONECUT1,2:-0.109200142648;AIRE:-0.111208747014;HES1:-0.119602748668;FOXP1:-0.122298808649;GZF1:-0.181112618571;RORA:-0.182294293557;FOSL2:-0.186491608478;TAL1_TCF{3,4,12}:-0.198206975988;ZEB1:-0.205746258076;DBP:-0.207378519883;NFE2:-0.212729682815;ELF1,2,4:-0.240956855792;CUX2:-0.29691399765;BACH2:-0.29960390264;FOXA2:-0.300173392631;ZNF423:-0.322028280466;MYFfamily:-0.328651046955;NR5A1,2:-0.33243644979;HOX{A6,A7,B6,B7}:-0.336893963159;BPTF:-0.350276914382;LMO2:-0.350484300584;ZNF384:-0.359731352735;FOXL1:-0.363024110366;FOS_FOS{B,L1}_JUN{B,D}:-0.365229491603;MAFB:-0.377099385004;ALX4:-0.377694163454;PAX6:-0.397636571037;POU6F1:-0.400312029129;SRF:-0.41665542129;GATA6:-0.437722469907;MTF1:-0.453974825382;ADNP_IRX_SIX_ZHX:-0.460203420912;RXR{A,B,G}:-0.462635268778;RREB1:-0.466750131399;HOX{A5,B5}:-0.468127192836;HNF1A:-0.468777554778;IKZF1:-0.470700131022;ATF5_CREB3:-0.473630869739;REST:-0.514422984715;NHLH1,2:-0.524149365018;HBP1_HMGB_SSRP1_UBTF:-0.526325490717;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.540856191639;GFI1B:-0.542382740241;VSX1,2:-0.545658257061;SNAI1..3:-0.57108191452;MYB:-0.579858331889;ATF2:-0.582415009164;ATF4:-0.608655743219;STAT5{A,B}:-0.617782344341;PRRX1,2:-0.619839549428;FOX{D1,D2}:-0.648777018237;CDC5L:-0.683456945098;RFX2..5_RFXANK_RFXAP:-0.698544655744;CRX:-0.713410238232;ATF6:-0.753456972163;SOX{8,9,10}:-0.768516365341;ZBTB6:-0.808922976313;PAX5:-0.818903207683;NFIX:-0.864246774707;YY1:-0.864498849358;GCM1,2:-0.870642539937;SOX5:-0.890881933655;FOXN1:-0.892675212047;SOX17:-0.932633119967;ZIC1..3:-0.951784465368;NR3C1:-0.956875833945;T:-1.00011208678;MEF2{A,B,C,D}:-1.00089092347;HSF1,2:-1.00464842933;TEAD1:-1.01724848237;MYBL2:-1.02425289935;NKX2-1,4:-1.03775992147;ZNF238:-1.11831103177;E2F1..5:-1.17241819235;AHR_ARNT_ARNT2:-1.19446195514;STAT1,3:-1.21396802565;bHLH_family:-1.21506579038;GTF2I:-1.2705976964;ZNF148:-1.27431534429;HIC1:-1.28220167228;TBX4,5:-1.33818324989;BREu{core}:-1.34179068136;ZFP161:-1.4016842464;TLX1..3_NFIC{dimer}:-1.42161321802;TFAP2{A,C}:-1.46175410077;EGR1..3:-1.46254035388;MED-1{core}:-1.46522126216;MTE{core}:-1.49845247385;GFI1:-1.57604238075;XBP1:-1.57746382592;MZF1:-1.58096536025;TFAP2B:-1.58225674155;POU2F1..3:-1.58784022244;PAX3,7:-1.59048743087;ZNF143:-1.61290008512;NFATC1..3:-1.61835339124;SOX2:-1.62706030216;NRF1:-1.63552615371;RBPJ:-1.63831406097;GTF2A1,2:-1.67227227884;TP53:-1.68582284124;JUN:-1.74023353246;RFX1:-1.74684877167;HIF1A:-1.75657643301;NFY{A,B,C}:-1.79985398119;FOX{I1,J2}:-1.82432048203;MAZ:-1.84764967571;XCPE1{core}:-1.88599500119;ELK1,4_GABP{A,B1}:-1.92048176147;PATZ1:-1.96442932714;TFDP1:-2.07031445921;LEF1_TCF7_TCF7L1,2:-2.07379672276;CREB1:-2.1373772407;NANOG:-2.22528000316;SP1:-2.25623625337;PBX1:-2.5327239429 | |top_motifs=FOXD3:3.15540205872;ZBTB16:2.59706452834;NR6A1:2.36501794405;NKX2-2,8:2.11143991394;IKZF2:2.08071453754;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.93450736268;PAX4:1.93422413796;SREBF1,2:1.9286666472;HMGA1,2:1.8161173736;CDX1,2,4:1.74922781436;ARID5B:1.70458148137;DMAP1_NCOR{1,2}_SMARC:1.65312564102;RXRA_VDR{dimer}:1.57428391593;EN1,2:1.46759089499;UFEwm:1.33089315246;HMX1:1.31540137812;TLX2:1.2515901984;OCT4_SOX2{dimer}:1.22836677869;FOXP3:1.22538714676;NKX6-1,2:1.14511195029;ESR1:1.10344758304;NKX3-1:0.979864103927;NANOG{mouse}:0.945486400086;SPIB:0.919633722711;GATA4:0.914230163058;ALX1:0.840551540736;SPI1:0.820262168825;GLI1..3:0.819501177332;NKX3-2:0.760721058268;NFE2L1:0.747280076477;PAX1,9:0.731105398885;IRF7:0.709660417045;NFIL3:0.666947694843;ESRRA:0.651123737757;IRF1,2:0.608918951302;LHX3,4:0.5964000509;PITX1..3:0.579457445888;KLF4:0.561551354573;MYOD1:0.526692736353;NFE2L2:0.51723339662;HNF4A_NR2F1,2:0.486780925718;PAX8:0.480514340486;SPZ1:0.432984689678;HAND1,2:0.393681710363;POU1F1:0.381983045175;TFAP4:0.292631152138;SMAD1..7,9:0.289712830303;EVI1:0.269734880536;TFCP2:0.258549673906;ETS1,2:0.250529846461;HLF:0.241738659433;PDX1:0.237778166487;TGIF1:0.237178455651;NR1H4:0.229008835468;RUNX1..3:0.19805500134;POU5F1:0.185533745597;HOX{A4,D4}:0.182362164103;PAX2:0.169553483872;POU3F1..4:0.165997255059;CEBPA,B_DDIT3:0.141940675351;TOPORS:0.125641807328;FOX{F1,F2,J1}:0.104300272948;FOXO1,3,4:0.094712409722;PRDM1:0.0763254610231;HOXA9_MEIS1:0.0605601931529;FOXM1:0.0541865158484;EBF1:0.0523184578789;TEF:0.00658753393203;NFKB1_REL_RELA:-0.0090494139725;STAT2,4,6:-0.0359037641942;AR:-0.0420147320858;NKX2-3_NKX2-5:-0.0437698361025;FOXQ1:-0.0556956816051;EP300:-0.0609715812893;TBP:-0.0984581111006;PPARG:-0.109002602661;ONECUT1,2:-0.109200142648;AIRE:-0.111208747014;HES1:-0.119602748668;FOXP1:-0.122298808649;GZF1:-0.181112618571;RORA:-0.182294293557;FOSL2:-0.186491608478;TAL1_TCF{3,4,12}:-0.198206975988;ZEB1:-0.205746258076;DBP:-0.207378519883;NFE2:-0.212729682815;ELF1,2,4:-0.240956855792;CUX2:-0.29691399765;BACH2:-0.29960390264;FOXA2:-0.300173392631;ZNF423:-0.322028280466;MYFfamily:-0.328651046955;NR5A1,2:-0.33243644979;HOX{A6,A7,B6,B7}:-0.336893963159;BPTF:-0.350276914382;LMO2:-0.350484300584;ZNF384:-0.359731352735;FOXL1:-0.363024110366;FOS_FOS{B,L1}_JUN{B,D}:-0.365229491603;MAFB:-0.377099385004;ALX4:-0.377694163454;PAX6:-0.397636571037;POU6F1:-0.400312029129;SRF:-0.41665542129;GATA6:-0.437722469907;MTF1:-0.453974825382;ADNP_IRX_SIX_ZHX:-0.460203420912;RXR{A,B,G}:-0.462635268778;RREB1:-0.466750131399;HOX{A5,B5}:-0.468127192836;HNF1A:-0.468777554778;IKZF1:-0.470700131022;ATF5_CREB3:-0.473630869739;REST:-0.514422984715;NHLH1,2:-0.524149365018;HBP1_HMGB_SSRP1_UBTF:-0.526325490717;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.540856191639;GFI1B:-0.542382740241;VSX1,2:-0.545658257061;SNAI1..3:-0.57108191452;MYB:-0.579858331889;ATF2:-0.582415009164;ATF4:-0.608655743219;STAT5{A,B}:-0.617782344341;PRRX1,2:-0.619839549428;FOX{D1,D2}:-0.648777018237;CDC5L:-0.683456945098;RFX2..5_RFXANK_RFXAP:-0.698544655744;CRX:-0.713410238232;ATF6:-0.753456972163;SOX{8,9,10}:-0.768516365341;ZBTB6:-0.808922976313;PAX5:-0.818903207683;NFIX:-0.864246774707;YY1:-0.864498849358;GCM1,2:-0.870642539937;SOX5:-0.890881933655;FOXN1:-0.892675212047;SOX17:-0.932633119967;ZIC1..3:-0.951784465368;NR3C1:-0.956875833945;T:-1.00011208678;MEF2{A,B,C,D}:-1.00089092347;HSF1,2:-1.00464842933;TEAD1:-1.01724848237;MYBL2:-1.02425289935;NKX2-1,4:-1.03775992147;ZNF238:-1.11831103177;E2F1..5:-1.17241819235;AHR_ARNT_ARNT2:-1.19446195514;STAT1,3:-1.21396802565;bHLH_family:-1.21506579038;GTF2I:-1.2705976964;ZNF148:-1.27431534429;HIC1:-1.28220167228;TBX4,5:-1.33818324989;BREu{core}:-1.34179068136;ZFP161:-1.4016842464;TLX1..3_NFIC{dimer}:-1.42161321802;TFAP2{A,C}:-1.46175410077;EGR1..3:-1.46254035388;MED-1{core}:-1.46522126216;MTE{core}:-1.49845247385;GFI1:-1.57604238075;XBP1:-1.57746382592;MZF1:-1.58096536025;TFAP2B:-1.58225674155;POU2F1..3:-1.58784022244;PAX3,7:-1.59048743087;ZNF143:-1.61290008512;NFATC1..3:-1.61835339124;SOX2:-1.62706030216;NRF1:-1.63552615371;RBPJ:-1.63831406097;GTF2A1,2:-1.67227227884;TP53:-1.68582284124;JUN:-1.74023353246;RFX1:-1.74684877167;HIF1A:-1.75657643301;NFY{A,B,C}:-1.79985398119;FOX{I1,J2}:-1.82432048203;MAZ:-1.84764967571;XCPE1{core}:-1.88599500119;ELK1,4_GABP{A,B1}:-1.92048176147;PATZ1:-1.96442932714;TFDP1:-2.07031445921;LEF1_TCF7_TCF7L1,2:-2.07379672276;CREB1:-2.1373772407;NANOG:-2.22528000316;SP1:-2.25623625337;PBX1:-2.5327239429 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13311-142I8;search_select_hide=table117:FF:13311-142I8 | |||
}} | }} | ||
Latest revision as of 18:56, 4 June 2020
| Name: | Monocyte-derived macrophages response to udorn influenza infection |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13639 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13639
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13639
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0333 |
| 10 | 10 | 0.0272 |
| 100 | 100 | 0.576 |
| 101 | 101 | 0.253 |
| 102 | 102 | 0.792 |
| 103 | 103 | 0.0864 |
| 104 | 104 | 0.686 |
| 105 | 105 | 0.901 |
| 106 | 106 | 0.0154 |
| 107 | 107 | 0.0672 |
| 108 | 108 | 0.432 |
| 109 | 109 | 0.131 |
| 11 | 11 | 0.0639 |
| 110 | 110 | 0.108 |
| 111 | 111 | 0.00135 |
| 112 | 112 | 0.0227 |
| 113 | 113 | 0.874 |
| 114 | 114 | 0.00282 |
| 115 | 115 | 0.458 |
| 116 | 116 | 0.424 |
| 117 | 117 | 0.121 |
| 118 | 118 | 0.317 |
| 119 | 119 | 0.0306 |
| 12 | 12 | 0.911 |
| 120 | 120 | 0.863 |
| 121 | 121 | 0.286 |
| 122 | 122 | 0.579 |
| 123 | 123 | 0.077 |
| 124 | 124 | 0.306 |
| 125 | 125 | 0.0143 |
| 126 | 126 | 0.539 |
| 127 | 127 | 0.219 |
| 128 | 128 | 0.0415 |
| 129 | 129 | 0.345 |
| 13 | 13 | 0.129 |
| 130 | 130 | 0.135 |
| 131 | 131 | 0.494 |
| 132 | 132 | 0.806 |
| 133 | 133 | 0.552 |
| 134 | 134 | 0.777 |
| 135 | 135 | 0.19 |
| 136 | 136 | 0.908 |
| 137 | 137 | 0.0994 |
| 138 | 138 | 0.542 |
| 139 | 139 | 0.0279 |
| 14 | 14 | 0.574 |
| 140 | 140 | 0.0872 |
| 141 | 141 | 0.439 |
| 142 | 142 | 0.767 |
| 143 | 143 | 0.184 |
| 144 | 144 | 0.371 |
| 145 | 145 | 0.125 |
| 146 | 146 | 0.792 |
| 147 | 147 | 0.899 |
| 148 | 148 | 0.00577 |
| 149 | 149 | 0.213 |
| 15 | 15 | 0.072 |
| 150 | 150 | 0.475 |
| 151 | 151 | 0.438 |
| 152 | 152 | 0.325 |
| 153 | 153 | 0.835 |
| 154 | 154 | 0.69 |
| 155 | 155 | 0.13 |
| 156 | 156 | 0.651 |
| 157 | 157 | 0.584 |
| 158 | 158 | 0.474 |
| 159 | 159 | 0.804 |
| 16 | 16 | 0.135 |
| 160 | 160 | 0.0935 |
| 161 | 161 | 0.406 |
| 162 | 162 | 0.387 |
| 163 | 163 | 0.809 |
| 164 | 164 | 0.217 |
| 165 | 165 | 0.116 |
| 166 | 166 | 0.807 |
| 167 | 167 | 0.0267 |
| 168 | 168 | 0.507 |
| 169 | 169 | 0.004 |
| 17 | 17 | 0.138 |
| 18 | 18 | 0.0991 |
| 19 | 19 | 0.149 |
| 2 | 2 | 0.855 |
| 20 | 20 | 0.839 |
| 21 | 21 | 0.262 |
| 22 | 22 | 0.295 |
| 23 | 23 | 0.169 |
| 24 | 24 | 0.485 |
| 25 | 25 | 0.703 |
| 26 | 26 | 0.0156 |
| 27 | 27 | 0.232 |
| 28 | 28 | 0.874 |
| 29 | 29 | 0.288 |
| 3 | 3 | 0.054 |
| 30 | 30 | 0.459 |
| 31 | 31 | 0.595 |
| 32 | 32 | 0.128 |
| 33 | 33 | 0.396 |
| 34 | 34 | 0.648 |
| 35 | 35 | 0.115 |
| 36 | 36 | 0.0317 |
| 37 | 37 | 0.133 |
| 38 | 38 | 0.207 |
| 39 | 39 | 0.426 |
| 4 | 4 | 0.743 |
| 40 | 40 | 0.243 |
| 41 | 41 | 0.485 |
| 42 | 42 | 0.527 |
| 43 | 43 | 0.0882 |
| 44 | 44 | 0.0231 |
| 45 | 45 | 0.821 |
| 46 | 46 | 0.0371 |
| 47 | 47 | 0.175 |
| 48 | 48 | 0.223 |
| 49 | 49 | 0.131 |
| 5 | 5 | 0.379 |
| 50 | 50 | 0.99 |
| 51 | 51 | 0.447 |
| 52 | 52 | 0.374 |
| 53 | 53 | 0.614 |
| 54 | 54 | 0.43 |
| 55 | 55 | 0.161 |
| 56 | 56 | 0.553 |
| 57 | 57 | 0.212 |
| 58 | 58 | 0.235 |
| 59 | 59 | 0.118 |
| 6 | 6 | 0.293 |
| 60 | 60 | 0.0894 |
| 61 | 61 | 0.356 |
| 62 | 62 | 0.0924 |
| 63 | 63 | 0.207 |
| 64 | 64 | 0.18 |
| 65 | 65 | 0.0914 |
| 66 | 66 | 0.65 |
| 67 | 67 | 0.234 |
| 68 | 68 | 0.721 |
| 69 | 69 | 0.353 |
| 7 | 7 | 0.414 |
| 70 | 70 | 0.00913 |
| 71 | 71 | 0.0448 |
| 72 | 72 | 0.325 |
| 73 | 73 | 0.209 |
| 74 | 74 | 0.517 |
| 75 | 75 | 0.111 |
| 76 | 76 | 0.451 |
| 77 | 77 | 0.171 |
| 78 | 78 | 0.148 |
| 79 | 79 | 0.00175 |
| 8 | 8 | 0.0356 |
| 80 | 80 | 0.781 |
| 81 | 81 | 0.138 |
| 82 | 82 | 0.0841 |
| 83 | 83 | 0.989 |
| 84 | 84 | 0.771 |
| 85 | 85 | 0.00586 |
| 86 | 86 | 0.225 |
| 87 | 87 | 0.652 |
| 88 | 88 | 0.774 |
| 89 | 89 | 0.0495 |
| 9 | 9 | 0.439 |
| 90 | 90 | 0.054 |
| 91 | 91 | 0.373 |
| 92 | 92 | 0.0829 |
| 93 | 93 | 0.396 |
| 94 | 94 | 0.0245 |
| 95 | 95 | 0.267 |
| 96 | 96 | 0.076 |
| 97 | 97 | 0.994 |
| 98 | 98 | 0.116 |
| 99 | 99 | 0.978 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13639
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011215 human Monocyte-derived macrophages 0h after udorn influenza infection sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000235 (macrophage)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000357 (0 hr sample)
0000086 (human macrophage sample)
0000647 (udorn influenza infection sample)
0011215 (human Monocyte-derived macrophages 0h after udorn influenza infection sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
