FF:13323-143B2: Difference between revisions

Latest revision as of 18:56, 4 June 2020

Name:	Monocyte-derived macrophages response to udorn influenza infection
Species:	Human (Homo sapiens)
Library ID:	CNhs13650
Sample type:	time courses
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	n/a
age	adult
cell type	HMDM
cell line	Primary
company	NA
collaboration	Baillie/Tomoiu/Fisher/Hume
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004904

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13650		CAGE		DRX008598		DRR009470

Accession ID Hg19

Library id		BAM		CTSS
CNhs13650		DRZ000895		DRZ002280

Accession ID Hg38

Library id		BAM		CTSS
CNhs13650		DRZ012245		DRZ013630

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.119
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.177
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.274
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	1.219
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0655
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.318
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.78
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.218
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.171
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.191
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.601
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.655
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.155
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.308
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.099
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.303
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.407
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	1.206
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.302
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.302
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.177
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.177
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.655
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	1.111
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13650

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.70481e-4
MA0003.1	MA0003.1	0.126
MA0004.1	MA0004.1	0.202
MA0006.1	MA0006.1	0.683
MA0007.1	MA0007.1	0.0759
MA0009.1	MA0009.1	0.273
MA0014.1	MA0014.1	0.233
MA0017.1	MA0017.1	0.00198
MA0018.2	MA0018.2	0.005
MA0019.1	MA0019.1	0.575
MA0024.1	MA0024.1	0.00733
MA0025.1	MA0025.1	0.449
MA0027.1	MA0027.1	0.142
MA0028.1	MA0028.1	0.454
MA0029.1	MA0029.1	0.683
MA0030.1	MA0030.1	0.00583
MA0031.1	MA0031.1	0.114
MA0035.2	MA0035.2	0.721
MA0038.1	MA0038.1	0.0382
MA0039.2	MA0039.2	0.927
MA0040.1	MA0040.1	0.804
MA0041.1	MA0041.1	0.441
MA0042.1	MA0042.1	0.822
MA0043.1	MA0043.1	0.0143
MA0046.1	MA0046.1	0.184
MA0047.2	MA0047.2	0.434
MA0048.1	MA0048.1	0.432
MA0050.1	MA0050.1	2.02255e-4
MA0051.1	MA0051.1	0.00941
MA0052.1	MA0052.1	0.23
MA0055.1	MA0055.1	0.646
MA0057.1	MA0057.1	0.596
MA0058.1	MA0058.1	0.0462
MA0059.1	MA0059.1	0.133
MA0060.1	MA0060.1	3.96578e-9
MA0061.1	MA0061.1	0.124
MA0062.2	MA0062.2	0.613
MA0065.2	MA0065.2	0.00234
MA0066.1	MA0066.1	0.00285
MA0067.1	MA0067.1	0.285
MA0068.1	MA0068.1	9.30148e-4
MA0069.1	MA0069.1	0.717
MA0070.1	MA0070.1	0.739
MA0071.1	MA0071.1	0.0709
MA0072.1	MA0072.1	0.856
MA0073.1	MA0073.1	0.367
MA0074.1	MA0074.1	0.151
MA0076.1	MA0076.1	0.253
MA0077.1	MA0077.1	0.467
MA0078.1	MA0078.1	0.796
MA0079.2	MA0079.2	0.927
MA0080.2	MA0080.2	5.47982e-15
MA0081.1	MA0081.1	0.00155
MA0083.1	MA0083.1	0.278
MA0084.1	MA0084.1	0.329
MA0087.1	MA0087.1	0.82
MA0088.1	MA0088.1	0.504
MA0090.1	MA0090.1	0.0146
MA0091.1	MA0091.1	0.197
MA0092.1	MA0092.1	0.29
MA0093.1	MA0093.1	0.184
MA0099.2	MA0099.2	0.446
MA0100.1	MA0100.1	0.592
MA0101.1	MA0101.1	0.698
MA0102.2	MA0102.2	0.0299
MA0103.1	MA0103.1	0.291
MA0104.2	MA0104.2	0.369
MA0105.1	MA0105.1	7.49777e-4
MA0106.1	MA0106.1	0.969
MA0107.1	MA0107.1	0.625
MA0108.2	MA0108.2	1.65305e-5
MA0111.1	MA0111.1	0.215
MA0112.2	MA0112.2	2.75626e-5
MA0113.1	MA0113.1	0.507
MA0114.1	MA0114.1	0.0146
MA0115.1	MA0115.1	0.44
MA0116.1	MA0116.1	7.22934e-5
MA0117.1	MA0117.1	0.734
MA0119.1	MA0119.1	0.517
MA0122.1	MA0122.1	0.991
MA0124.1	MA0124.1	0.454
MA0125.1	MA0125.1	0.971
MA0131.1	MA0131.1	0.213
MA0135.1	MA0135.1	0.609
MA0136.1	MA0136.1	3.07627e-9
MA0137.2	MA0137.2	0.965
MA0138.2	MA0138.2	0.275
MA0139.1	MA0139.1	0.24
MA0140.1	MA0140.1	0.417
MA0141.1	MA0141.1	0.00915
MA0142.1	MA0142.1	0.116
MA0143.1	MA0143.1	0.0935
MA0144.1	MA0144.1	0.262
MA0145.1	MA0145.1	0.118
MA0146.1	MA0146.1	0.0492
MA0147.1	MA0147.1	0.483
MA0148.1	MA0148.1	0.87
MA0149.1	MA0149.1	0.00861
MA0150.1	MA0150.1	0.158
MA0152.1	MA0152.1	0.754
MA0153.1	MA0153.1	0.0169
MA0154.1	MA0154.1	0.00337
MA0155.1	MA0155.1	0.531
MA0156.1	MA0156.1	0.0132
MA0157.1	MA0157.1	0.894
MA0159.1	MA0159.1	0.00422
MA0160.1	MA0160.1	0.0152
MA0162.1	MA0162.1	0.289
MA0163.1	MA0163.1	2.74904e-9
MA0164.1	MA0164.1	0.99
MA0258.1	MA0258.1	7.73808e-4
MA0259.1	MA0259.1	0.822

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13650

Novel motif	Logo	P-value
1	1	0.0794
10	10	0.0319
100	100	0.826
101	101	0.246
102	102	0.633
103	103	0.0708
104	104	0.764
105	105	0.671
106	106	0.017
107	107	0.29
108	108	0.635
109	109	0.054
11	11	0.0432
110	110	0.221
111	111	0.0098
112	112	0.029
113	113	0.976
114	114	0.00388
115	115	0.825
116	116	0.566
117	117	0.09
118	118	0.297
119	119	0.0819
12	12	0.767
120	120	0.163
121	121	0.411
122	122	0.958
123	123	0.102
124	124	0.396
125	125	0.0187
126	126	0.328
127	127	0.132
128	128	0.0281
129	129	0.377
13	13	0.08
130	130	0.402
131	131	0.899
132	132	0.548
133	133	0.418
134	134	0.609
135	135	0.0476
136	136	0.973
137	137	0.0759
138	138	0.299
139	139	0.0271
14	14	0.44
140	140	0.114
141	141	0.49
142	142	0.639
143	143	0.0986
144	144	0.349
145	145	0.29
146	146	0.778
147	147	0.513
148	148	0.00982
149	149	0.379
15	15	0.127
150	150	0.454
151	151	0.524
152	152	0.143
153	153	0.652
154	154	0.951
155	155	0.161
156	156	0.83
157	157	0.859
158	158	0.65
159	159	0.332
16	16	0.151
160	160	0.201
161	161	0.429
162	162	0.902
163	163	0.458
164	164	0.0973
165	165	0.354
166	166	0.698
167	167	0.0374
168	168	0.546
169	169	0.00343
17	17	0.206
18	18	0.134
19	19	0.216
2	2	0.841
20	20	0.949
21	21	0.351
22	22	0.2
23	23	0.23
24	24	0.186
25	25	0.467
26	26	0.0552
27	27	0.106
28	28	0.932
29	29	0.13
3	3	0.0422
30	30	0.662
31	31	0.515
32	32	0.216
33	33	0.307
34	34	0.364
35	35	0.256
36	36	0.037
37	37	0.0901
38	38	0.128
39	39	0.645
4	4	0.718
40	40	0.0796
41	41	0.139
42	42	0.599
43	43	0.11
44	44	0.00895
45	45	0.604
46	46	0.0796
47	47	0.218
48	48	0.192
49	49	0.16
5	5	0.374
50	50	0.926
51	51	0.337
52	52	0.304
53	53	0.479
54	54	0.316
55	55	0.245
56	56	0.675
57	57	0.401
58	58	0.23
59	59	0.095
6	6	0.372
60	60	0.0528
61	61	0.195
62	62	0.135
63	63	0.283
64	64	0.166
65	65	0.0872
66	66	0.847
67	67	0.087
68	68	0.944
69	69	0.46
7	7	0.212
70	70	0.0168
71	71	0.0477
72	72	0.211
73	73	0.0499
74	74	0.765
75	75	0.0438
76	76	0.352
77	77	0.214
78	78	0.0765
79	79	0.0169
8	8	0.0519
80	80	0.868
81	81	0.164
82	82	0.0462
83	83	0.81
84	84	0.771
85	85	0.0028
86	86	0.0824
87	87	0.136
88	88	0.506
89	89	0.0819
9	9	0.366
90	90	0.0127
91	91	0.357
92	92	0.0712
93	93	0.627
94	94	0.0133
95	95	0.0953
96	96	0.124
97	97	0.95
98	98	0.124
99	99	0.621

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13650

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011215 human Monocyte-derived macrophages 0h after udorn influenza infection sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000235 (macrophage)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000357 (0 hr sample)
0000086 (human macrophage sample)
0000647 (udorn influenza infection sample)
0011215 (human Monocyte-derived macrophages 0h after udorn influenza infection sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008490
+|DRA_sample_Accession=CAGE@SAMD00004904
-|accession_numbers=CAGE;DRX008598;DRR009470;DRZ000895;DRZ002280
+|accession_numbers=CAGE;DRX008598;DRR009470;DRZ000895;DRZ002280;DRZ012245;DRZ013630
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
+|donor= donor3 (536_119:Ud_0h)
 |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.55!352.08!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.53!341.03!PLEK;;chr12:54778471..54778528,-!p1@ZNF385A!2.30!198.89!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!2.27!185.84!IRF8;;chr20:39317868..39317884,-!p1@MAFB!2.03!1186.33!MAFB;;chr7:115670804..115670825,-!p1@TFEC!2.02!103.46!TFEC;;chr10:64576105..64576133,-!p1@EGR2!1.85!140.63!EGR2;;chr11:47400062..47400077,-!p2@SPI1!1.78!59.77!SPI1;;chr10:51572408..51572454,+!p3@NCOA4!1.68!258.66!NCOA4;;chr14:75988771..75988826,+!p1@BATF!1.66!59.27!BATF;;chr7:137620684..137620711,-!p4@CREB3L2!1.58!36.66!CREB3L2;;chr7:128577972..128578047,+!p1@IRF5!1.56!54.24!IRF5;;chr11:47279504..47279563,+!p1@NR1H3!1.55!76.34!NR1H3;;chr7:137620650..137620677,-!p3@CREB3L2!1.50!30.64!CREB3L2;;chr19:33793430..33793447,-!p1@CEBPA!1.49!121.55!CEBPA;;chr7:50344289..50344323,+!p1@IKZF1!1.46!28.13!IKZF1;;chr6:106534192..106534224,+!p1@PRDM1!1.37!61.78!PRDM1;;chr10:31288398..31288455,-!p2@ZNF438!1.34!24.11!ZNF438;;chr2:145277640..145277771,-!p1@ZEB2!1.31!255.15!ZEB2;;chr11:47399996..47400014,-!p4@SPI1!1.31!19.59!SPI1;;chr6:41691289..41691312,-!p9@TFEB!1.23!16.07!TFEB;;chr11:47399947..47399961,-!p3@SPI1!1.22!15.57!SPI1;;chr16:79634624..79634642,-!p1@MAF!1.20!57.26!MAF;;chr11:47400045..47400060,-!p6@SPI1!1.18!14.06!SPI1;;chr10:51572339..51572376,+!p4@NCOA4!1.16!30.14!NCOA4;;chr10:31288370..31288393,-!p3@ZNF438!1.16!13.56!ZNF438;;chr16:79634595..79634620,-!p2@MAF!1.15!24.11!MAF;;chr16:67198683..67198698,+!p2@HSF4!1.15!13.06!HSF4;;chr2:70142232..70142251,+!p1@MXD1!1.13!69.81!MXD1;;chr6:106534230..106534254,+!p2@PRDM1!1.13!31.64!PRDM1;;chr19:54041669..54041697,+!p2@ZNF331!1.13!12.56!ZNF331;;chr2:68592394..68592405,+!p2@PLEK!1.12!12.05!PLEK;;chr3:69788576..69788648,+!p1@MITF!1.10!61.28!MITF;;chr7:50343634..50343717,+!p2@IKZF1!1.10!11.55!IKZF1;;chr11:47400032..47400043,-!p5@SPI1!1.10!11.55!SPI1;;chr2:145277882..145277967,-!p3@ZEB2!1.07!18.58!ZEB2;;chr19:49140609..49140643,-!p1@DBP!1.05!58.76!DBP;;chr12:12764995..12765017,+!p3@CREBL2!1.05!14.57!CREBL2;;chr19:50432132..50432217,+!p2@ATF5!1.01!11.05!ATF5;;chr14:75988831..75988847,+!p2@BATF!1.00!9.04!BATF;;chr19:13213954..13214021,-!p4@LYL1!1.00!9.04!LYL1;;chr17:40440481..40440550,+!p1@STAT5A!0.96!60.77!STAT5A;;chr16:79634581..79634592,-!p4@MAF!0.96!8.04!MAF;;chr19:13213662..13213686,-!p1@LYL1!0.94!11.55!LYL1;;chr5:88178983..88179012,-!p1@MEF2C!0.93!60.77!MEF2C;;chr2:113999360..113999386,-!p4@PAX8!0.93!7.53!PAX8;;chr19:35759824..35759891,+!p1@USF2!0.91!233.05!USF2;;chrY:21906594..21906622,-!p1@KDM5D!0.90!7.03!KDM5D;;chr11:128563948..128564003,+!p1@FLI1!0.89!86.39!FLI1;;chrX:131623044..131623089,-!p1@MBNL3!0.89!29.13!MBNL3;;chr9:137217986..137218049,+!p3@RXRA!0.89!20.09!RXRA;;chrY:2803415..2803468,+!p1@ZFY!0.88!6.53!ZFY;;chr12:26277956..26277980,-!p1@BHLHE41!0.87!24.11!BHLHE41;;chr6:44233252..44233296,-!p1@NFKBIE!0.85!64.29!NFKBIE;;chr13:41593425..41593480,-!p1@ELF1!0.85!40.68!ELF1;;chr16:79633894..79633954,-!p3@MAF!0.85!12.05!MAF;;chr2:145275982..145276003,-!p7@ZEB2!0.85!6.03!ZEB2;;chr6:106535598..106535637,+!p7@PRDM1!0.85!6.03!PRDM1;;chr13:27998831..27998851,+!p2@GTF3A!0.84!38.17!GTF3A;;chr18:52989031..52989079,-!p2@TCF4!0.84!14.57!TCF4;;chr12:12764947..12764986,+!p2@CREBL2!0.82!11.55!CREBL2;;chr7:149470641..149470694,-!p1@ZNF467!0.79!25.11!ZNF467;;chr13:27998854..27998866,+!p3@GTF3A!0.79!11.05!GTF3A;;chr19:13213704..13213726,-!p3@LYL1!0.79!7.03!LYL1;;chr16:31885093..31885165,+!p1@ZNF267!0.78!83.37!ZNF267;;chr1:221053049..221053075,+!p3@HLX!0.78!9.04!HLX;;chr1:78050720..78050734,-!p9@ZZZ3!0.78!5.02!ZZZ3;;chr10:94449703..94449718,+!p1@HHEX!0.77!20.59!HHEX;;chr3:185826855..185826911,-!p1@ETV5!0.76!143.14!ETV5;;chr14:62162258..62162269,+!p2@HIF1A!0.76!50.73!HIF1A;;chr19:35759976..35760042,+!p4@USF2!0.76!27.12!USF2;;chr1:25256756..25256774,-!p1@RUNX3!0.76!9.54!RUNX3;;chr2:70167296..70167306,+!p3@MXD1!0.76!7.53!MXD1;;chr3:12330560..12330579,+!p1@PPARG!0.76!5.52!PPARG;;chr16:67198633..67198671,+!p1@HSF4!0.74!4.52!HSF4;;chr22:38597987..38598021,+!p2@MAFF!0.71!28.63!MAFF;;chr3:12329358..12329393,+!p3@PPARG!0.71!11.05!PPARG;;chr1:158979792..158979814,+!p2@IFI16!0.70!43.19!IFI16;;chr14:62203595..62203676,+!p4@HIF1A!0.70!8.04!HIF1A;;chr12:26277929..26277955,-!p3@BHLHE41!0.70!6.03!BHLHE41;;chr6:144385698..144385742,-!p2@PLAGL1!0.70!5.02!PLAGL1;;chr18:52989001..52989030,-!p10@TCF4!0.70!4.52!TCF4;;chr10:3827371..3827386,-!p2@KLF6!0.68!36.16!KLF6;;chr5:321810..321877,+!p1@AHRR!0.68!13.56!AHRR;;chr1:158979872..158979898,+!p3@IFI16!0.68!13.06!IFI16;;chr19:42636586..42636607,-!p1@POU2F2!0.68!11.55!POU2F2;;chr19:45252008..45252024,+!p2@BCL3!0.67!13.56!BCL3;;chr2:113057415..113057477,+!p3@ZC3H6!0.67!5.02!ZC3H6;;chr14:89628064..89628109,-!p4@FOXN3!0.66!8.04!FOXN3;;chr14:75745523..75745537,+!p1@FOS!0.65!484.68!FOS;;chr5:76383017..76383068,-!p1@ZBED3!0.65!14.57!ZBED3;;chr10:94449675..94449694,+!p2@HHEX!0.65!10.55!HHEX;;chr2:145282041..145282092,-!p8@ZEB2!0.65!5.52!ZEB2;;chr2:145275947..145275981,-!p10@ZEB2!0.65!3.52!ZEB2;;chr19:35760698..35760738,+!p8@USF2!0.65!3.52!USF2;;chr10:60144869..60144887,+!p3@TFAM!0.65!3.52!TFAM;;chr1:25256439..25256476,-!p3@RUNX3!0.65!3.52!RUNX3;;chr1:158979686..158979745,+!p1@IFI16!0.64!132.09!IFI16;;chr2:61108695..61108753,+!p1@REL!0.64!27.12!REL;;chr12:54785074..54785122,-!p2@ZNF385A!0.64!5.52!ZNF385A;;chr14:35872453..35872485,-!p2@NFKBIA!0.63!9.04!NFKBIA;;chr18:51690935..51690957,-!p8@MBD2!0.63!5.02!MBD2;;chr7:28725715..28725727,+!p3@CREB5!0.63!4.02!CREB5;;chr10:35484804..35484902,+!p2@CREM!0.62!14.06!CREM;;chr19:49140572..49140594,-!p2@DBP!0.62!5.52!DBP;;chr5:88179195..88179224,-!p3@MEF2C!0.62!5.52!MEF2C;;chr16:73093174..73093209,-!p3@ZFHX3!0.62!4.52!ZFHX3;;chr14:35873947..35873965,-!p1@NFKBIA!0.61!238.57!NFKBIA;;chr14:68283291..68283323,-!p1@ZFYVE26!0.61!61.28!ZFYVE26;;chr2:97202480..97202499,+!p1@ARID5A!0.61!37.17!ARID5A;;chr1:221052776..221052799,+!p1@HLX!0.61!6.03!HLX;;chr8:71316428..71316459,-!p2@NCOA2!0.60!5.52!NCOA2;;chr19:49140595..49140607,-!p3@DBP!0.60!4.52!DBP;;chr3:101546827..101546847,+!p2@NFKBIZ!0.60!4.52!NFKBIZ;;chr2:122042770..122042785,-!p1@TFCP2L1!0.60!3.01!TFCP2L1;;chr19:13213399..13213414,-!p6@LYL1!0.60!3.01!LYL1;;chr19:54058073..54058088,+!p1@ZNF331!0.60!3.01!ZNF331;;chr11:47279491..47279502,+!p6@NR1H3!0.60!3.01!NR1H3;;chr14:62214151..62214164,+!p11@HIF1A!0.60!3.01!HIF1A;;chr18:77160282..77160343,+!p2@NFATC1!0.59!21.60!NFATC1;;chr4:87968203..87968221,+!p11@AFF1!0.58!5.02!AFF1;;chr8:48650715..48650735,-!p1@CEBPD!0.57!432.44!CEBPD;;chr6:34204973..34204990,+!p4@HMGA1!0.57!44.70!HMGA1;;chr3:48282587..48282603,+!p1@ZNF589!0.57!14.57!ZNF589;;chr18:74207147..74207183,-!p1@ZNF516!0.57!9.54!ZNF516;;chr3:5021113..5021180,+!p1@BHLHE40!0.56!234.05!BHLHE40;;chr19:926001..926046,+!p1@ARID3A!0.56!11.05!ARID3A;;chr15:90544532..90544563,+!p1@ZNF710!0.56!6.03!ZNF710;;chr12:12764773..12764852,+!p1@CREBL2!0.55!80.86!CREBL2;;chr8:22550982..22550999,-!p1@EGR3!0.55!8.54!EGR3;;chr14:35872962..35873025,-!p3@NFKBIA!0.55!7.53!NFKBIA;;chr18:3449527..3449582,+!p6@TGIF1!0.55!5.52!TGIF1;;chr6:44232765..44232778,-!p5@NFKBIE!0.55!2.51!NFKBIE;;chr7:50344251..50344288,+!p3@IKZF1!0.55!2.51!IKZF1;;chr1:158985686..158985719,+!p15@IFI16!0.55!2.51!IFI16;;chr20:3321190..3321215,-!p7@C20orf194!0.55!2.51!C20orf194;;chrY:21906761..21906810,-!p2@KDM5D!0.55!2.51!KDM5D;;chr11:47399920..47399931,-!p7@SPI1!0.55!2.51!SPI1;;chr2:145277620..145277627,-!p19@ZEB2!0.55!2.51!ZEB2;;chr2:231090433..231090469,+!p1@SP140!0.55!2.51!SP140;;chr2:238600998..238601013,+!p5@LRRFIP1!0.55!2.51!LRRFIP1;;chr14:74226747..74226779,-!p3@C14orf43!0.54!17.08!C14orf43;;chr14:74226783..74226819,-!p4@C14orf43!0.54!15.07!C14orf43;;chr5:88179017..88179046,-!p2@MEF2C!0.54!12.05!MEF2C;;chr8:116681123..116681143,-!p4@TRPS1!0.54!5.52!TRPS1;;chr16:73092791..73092831,-!p4@ZFHX3!0.54!5.02!ZFHX3;;chr4:87857433..87857472,+!p9@AFF1!0.54!5.02!AFF1;;chr1:212782094..212782109,+!p1@ATF3!0.53!83.88!ATF3;;chr4:87856129..87856186,+!p1@AFF1!0.53!42.69!AFF1;;chr11:615570..615721,-!p2@IRF7!0.53!5.52!IRF7;;chr12:26277817..26277863,-!p2@BHLHE41!0.53!3.52!BHLHE41;;chr8:116681194..116681214,-!p1@TRPS1!0.52!27.62!TRPS1;;chr7:17338324..17338341,+!p3@AHR!0.52!9.54!AHR;;chr19:926055..926068,+!p2@ARID3A!0.52!6.03!ARID3A;;chr8:116680215..116680245,-!p6@TRPS1!0.52!4.02!TRPS1;;chr7:17369649..17369664,+!p4@AHR!0.52!3.01!AHR;;chr7:139762641..139762768,-!p1@PARP12!0.51!39.68!PARP12;;chr2:238600933..238600985,+!p3@LRRFIP1!0.51!15.57!LRRFIP1;;chr12:11802753..11802834,+!p2@ETV6!0.51!14.06!ETV6;;chr4:185395633..185395651,-!p2@IRF2!0.51!4.02!IRF2;;chr7:100076723..100076737,-!p3@TSC22D4!0.51!4.02!TSC22D4;;chr14:62193465..62193490,+!p7@HIF1A!0.51!3.52!HIF1A;;chr2:8822176..8822196,+!p1@ID2!0.50!403.31!ID2;;chrX:129244454..129244488,-!p1@ELF4!0.50!20.09!ELF4;;chr5:137804484..137804498,+!p2@EGR1!0.50!11.05!EGR1;;chr4:87928328..87928351,+!p6@AFF1!0.50!7.03!AFF1;;chr19:36391434..36391450,-!p1@NFKBID!0.50!5.02!NFKBID;;chr2:74730430..74730451,-!p1@LBX2!0.50!4.02!LBX2;;chr1:221052733..221052749,+!p2@HLX!0.50!3.01!HLX;;chr19:12902289..12902307,+!p1@JUNB!0.49!646.40!JUNB;;chr4:103422499..103422632,+!p1@NFKB1!0.49!58.76!NFKB1;;chr2:10183651..10183713,+!p1@KLF11!0.49!20.09!KLF11;;chr6:41703296..41703367,-!p1@TFEB!0.49!13.56!TFEB;;chr19:11998584..11998649,+!p1@ZNF69!0.49!12.05!ZNF69;;chr1:249132556..249132573,+!p3@ZNF672!0.49!7.53!ZNF672;;chr16:68118689..68118733,+!p3@NFATC3!0.49!6.53!NFATC3;;chr10:3824229..3824253,-!p7@KLF6!0.49!2.51!KLF6;;chr7:17338266..17338282,+!p1@AHR!0.48!29.13!AHR;;chr19:22235279..22235301,+!p1@ZNF257!0.48!4.52!ZNF257;;chr2:28618532..28618610,+!p4@FOSL2!0.48!4.02!FOSL2;;chr2:61108771..61108789,+!p4@REL!0.48!3.52!REL;;chr14:62203749..62203798,+!p5@HIF1A!0.48!3.52!HIF1A;;chr1:158985493..158985535,+!p4@IFI16!0.48!3.52!IFI16;;chr7:27835758..27835772,+!p3@TAX1BP1!0.48!3.01!TAX1BP1;;chr19:37958404..37958434,+!p2@ZNF570!0.48!3.01!ZNF570;;chr1:221052994..221053008,+!p6@HLX!0.48!2.51!HLX;;chr1:221052669..221052678,+!p12@HLX!0.48!2.01!HLX;;chr21:30672433..30672464,+!p6@BACH1!0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 |ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
@@ Line 41: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor3%2520%2528536_119%253aUd_0h%2529.CNhs13650.13323-143B2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor3%2520%2528536_119%253aUd_0h%2529.CNhs13650.13323-143B2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor3%2520%2528536_119%253aUd_0h%2529.CNhs13650.13323-143B2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor3%2520%2528536_119%253aUd_0h%2529.CNhs13650.13323-143B2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor3%2520%2528536_119%253aUd_0h%2529.CNhs13650.13323-143B2.hg38.nobarcode.ctss.bed.gz
 |id=FF:13323-143B2
 |is_a=EFO:0002091;;FF:0011215
 |is_obsolete=
 |library_id=CNhs13650
-|library_id_phase_based=1:CNhs13650
+|library_id_phase_based=2:CNhs13650
-|name=Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13323
+|name=Monocyte-derived macrophages response to udorn influenza infection
 |namespace=
 |part_of=
@@ Line 53: / Line 64: @@
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@@ Line 88: / Line 100: @@
 |sample_strain=
 |sample_tissue=blood
-|timecourse=Influenza_timecourse
+|time= 00hr00min
+|timecourse=Macrophage_influenza_infection
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13323-143B2;search_select_hide=table117:FF:13323-143B2
 }}

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FF:13323-143B2: Difference between revisions

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Latest revision as of 18:56, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0