FF:14313-155D2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005454 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008043;DRR008915;DRZ000340;DRZ001725;DRZ011690;DRZ013075 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000408,FF:0000350,FF:0000405,FF:0000168,FF:0000664 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528cytoplasmic%2520fraction%2529.CNhs12401.14313-155D2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528cytoplasmic%2520fraction%2529.CNhs12401.14313-155D2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528cytoplasmic%2520fraction%2529.CNhs12401.14313-155D2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528cytoplasmic%2520fraction%2529.CNhs12401.14313-155D2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528cytoplasmic%2520fraction%2529.CNhs12401.14313-155D2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:14313-155D2 | |id=FF:14313-155D2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000664 | ||
|is_obsolete= | |||
|library_id=CNhs12401 | |||
|library_id_phase_based=2:CNhs12401 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14313 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14313 | |||
|name=Smooth Muscle Cells - Aortic, donor0 (cytoplasmic fraction) | |name=Smooth Muscle Cells - Aortic, donor0 (cytoplasmic fraction) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12401,LSID914,release011,COMPLETED | |profile_hcage=CNhs12401,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=155 | |rna_box=155 | ||
|rna_catalog_number=CA354-R10a | |rna_catalog_number=CA354-R10a | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=77.004 | |rna_weight_ug=77.004 | ||
|sample_age=54 | |sample_age=54 | ||
|sample_category=fractionations and perturbations | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition=cytoplasmic RNA | |sample_experimental_condition=cytoplasmic RNA | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.09273328387854e-237!GO:0005737;cytoplasm;1.6127702606309e-191!GO:0043226;organelle;5.97206385159204e-178!GO:0043229;intracellular organelle;1.30454172607096e-177!GO:0043231;intracellular membrane-bound organelle;1.12156146416308e-170!GO:0043227;membrane-bound organelle;2.22632863665651e-170!GO:0044444;cytoplasmic part;6.3331146249217e-131!GO:0044422;organelle part;4.61209004451814e-119!GO:0044446;intracellular organelle part;6.63769079227279e-118!GO:0032991;macromolecular complex;1.15608176550041e-96!GO:0044237;cellular metabolic process;3.93530174042949e-88!GO:0030529;ribonucleoprotein complex;5.19646098296193e-88!GO:0044238;primary metabolic process;5.24240964224872e-85!GO:0005739;mitochondrion;1.2280295371606e-79!GO:0043170;macromolecule metabolic process;1.62420424781183e-77!GO:0005515;protein binding;2.28118018069751e-70!GO:0043233;organelle lumen;1.14886284168856e-66!GO:0031974;membrane-enclosed lumen;1.14886284168856e-66!GO:0005634;nucleus;5.28984759713082e-64!GO:0003723;RNA binding;7.1697667505294e-62!GO:0005840;ribosome;2.26458144476778e-59!GO:0006412;translation;8.03690592774127e-58!GO:0044428;nuclear part;2.47291423325094e-57!GO:0003735;structural constituent of ribosome;3.63566093920471e-54!GO:0044429;mitochondrial part;1.98807449941444e-53!GO:0019538;protein metabolic process;4.86494609676002e-50!GO:0044249;cellular biosynthetic process;1.95450215891038e-49!GO:0043234;protein complex;4.77187069455418e-48!GO:0005829;cytosol;1.53220996799413e-47!GO:0009058;biosynthetic process;4.42194936942401e-46!GO:0015031;protein transport;5.12179831307473e-46!GO:0033279;ribosomal subunit;7.76933165895664e-46!GO:0044260;cellular macromolecule metabolic process;8.81542683535207e-46!GO:0044267;cellular protein metabolic process;4.63269248272623e-45!GO:0033036;macromolecule localization;1.8526113689458e-43!GO:0010467;gene expression;9.12418322822617e-43!GO:0045184;establishment of protein localization;1.48711723110786e-42!GO:0009059;macromolecule biosynthetic process;7.13251579020622e-42!GO:0006396;RNA processing;1.45340317714917e-41!GO:0008104;protein localization;4.31430000836127e-41!GO:0016043;cellular component organization and biogenesis;5.57095526917798e-41!GO:0031090;organelle membrane;3.18203077227209e-40!GO:0043283;biopolymer metabolic process;6.62230549187256e-40!GO:0031967;organelle envelope;1.61484651126283e-38!GO:0031975;envelope;3.71732039705647e-38!GO:0031981;nuclear lumen;8.50386567369665e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.1469998274172e-35!GO:0005740;mitochondrial envelope;1.37613751297403e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.02573386015993e-33!GO:0046907;intracellular transport;3.09113269966472e-33!GO:0031966;mitochondrial membrane;1.80884416457686e-32!GO:0016071;mRNA metabolic process;4.80517896346113e-31!GO:0008380;RNA splicing;5.94480236590257e-31!GO:0019866;organelle inner membrane;6.05123354162454e-30!GO:0005743;mitochondrial inner membrane;6.43691876312268e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.08669946028316e-29!GO:0006886;intracellular protein transport;8.26589528709837e-29!GO:0044445;cytosolic part;1.88232719133212e-27!GO:0006397;mRNA processing;3.56367232417231e-27!GO:0043228;non-membrane-bound organelle;1.03009939420684e-26!GO:0043232;intracellular non-membrane-bound organelle;1.03009939420684e-26!GO:0065003;macromolecular complex assembly;1.37649058147464e-26!GO:0006996;organelle organization and biogenesis;2.62870407650446e-26!GO:0006119;oxidative phosphorylation;6.47858515221601e-25!GO:0015934;large ribosomal subunit;2.18281002972022e-24!GO:0044455;mitochondrial membrane part;4.23326813340819e-24!GO:0022607;cellular component assembly;4.56161274454785e-24!GO:0005654;nucleoplasm;5.53943536681275e-24!GO:0015935;small ribosomal subunit;1.54927269454545e-22!GO:0031980;mitochondrial lumen;6.07343156541986e-22!GO:0005759;mitochondrial matrix;6.07343156541986e-22!GO:0051649;establishment of cellular localization;7.6908791674579e-22!GO:0005681;spliceosome;1.07607109128904e-21!GO:0051641;cellular localization;1.24826255061222e-21!GO:0044451;nucleoplasm part;3.68947245020532e-20!GO:0006512;ubiquitin cycle;9.86420153083535e-20!GO:0006457;protein folding;1.90325166666405e-19!GO:0005746;mitochondrial respiratory chain;2.50702365418644e-19!GO:0051186;cofactor metabolic process;4.39083756254326e-19!GO:0022618;protein-RNA complex assembly;1.88115092024892e-18!GO:0000166;nucleotide binding;1.99976147265805e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.90868884652673e-18!GO:0003676;nucleic acid binding;4.39070092376724e-18!GO:0016462;pyrophosphatase activity;4.99554756892699e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;5.47716327918422e-18!GO:0017111;nucleoside-triphosphatase activity;6.25173068940016e-18!GO:0016874;ligase activity;6.38649659561029e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.27315994771989e-17!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.32122914698286e-17!GO:0006259;DNA metabolic process;3.39861315356778e-17!GO:0008135;translation factor activity, nucleic acid binding;4.422573152865e-17!GO:0008134;transcription factor binding;4.422573152865e-17!GO:0050136;NADH dehydrogenase (quinone) activity;8.72136492322548e-17!GO:0003954;NADH dehydrogenase activity;8.72136492322548e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.72136492322548e-17!GO:0005761;mitochondrial ribosome;1.24153694097237e-16!GO:0000313;organellar ribosome;1.24153694097237e-16!GO:0016070;RNA metabolic process;1.56096614211641e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.80771213318616e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.04622683251775e-16!GO:0048193;Golgi vesicle transport;2.55431748227442e-15!GO:0005730;nucleolus;4.76093975835402e-15!GO:0042775;organelle ATP synthesis coupled electron transport;6.0312505174683e-15!GO:0042773;ATP synthesis coupled electron transport;6.0312505174683e-15!GO:0005794;Golgi apparatus;8.10183624235812e-15!GO:0030964;NADH dehydrogenase complex (quinone);8.30578076576163e-15!GO:0045271;respiratory chain complex I;8.30578076576163e-15!GO:0005747;mitochondrial respiratory chain complex I;8.30578076576163e-15!GO:0006605;protein targeting;8.52825786461046e-15!GO:0006732;coenzyme metabolic process;1.40511814020341e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.63946235863554e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.78373316047208e-14!GO:0044265;cellular macromolecule catabolic process;6.94329240081657e-14!GO:0016192;vesicle-mediated transport;7.98363514228866e-14!GO:0044248;cellular catabolic process;1.42477916139607e-13!GO:0032553;ribonucleotide binding;1.65246457533635e-13!GO:0032555;purine ribonucleotide binding;1.65246457533635e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.73519834151994e-13!GO:0019941;modification-dependent protein catabolic process;2.25021964312093e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.25021964312093e-13!GO:0048770;pigment granule;2.72628618848754e-13!GO:0042470;melanosome;2.72628618848754e-13!GO:0006511;ubiquitin-dependent protein catabolic process;3.09944994426712e-13!GO:0017076;purine nucleotide binding;3.24792364378102e-13!GO:0051082;unfolded protein binding;3.94489266966046e-13!GO:0009055;electron carrier activity;3.96773504062409e-13!GO:0044257;cellular protein catabolic process;4.77678161137743e-13!GO:0043285;biopolymer catabolic process;1.44904553449472e-12!GO:0003743;translation initiation factor activity;1.44904553449472e-12!GO:0043412;biopolymer modification;1.53902021033721e-12!GO:0006413;translational initiation;2.36387792191734e-12!GO:0009259;ribonucleotide metabolic process;3.11751486077002e-12!GO:0003712;transcription cofactor activity;3.87216286097224e-12!GO:0009057;macromolecule catabolic process;3.87216286097224e-12!GO:0012505;endomembrane system;6.09742483205309e-12!GO:0042254;ribosome biogenesis and assembly;8.51365969937268e-12!GO:0006163;purine nucleotide metabolic process;9.43228630927053e-12!GO:0009150;purine ribonucleotide metabolic process;1.00208531149535e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.50593632837397e-11!GO:0000375;RNA splicing, via transesterification reactions;1.50593632837397e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.50593632837397e-11!GO:0003924;GTPase activity;1.72135158764589e-11!GO:0006464;protein modification process;1.86514682653714e-11!GO:0007049;cell cycle;2.2930096146357e-11!GO:0012501;programmed cell death;4.38601387058473e-11!GO:0009260;ribonucleotide biosynthetic process;4.42262007067203e-11!GO:0009199;ribonucleoside triphosphate metabolic process;6.03440778521414e-11!GO:0006164;purine nucleotide biosynthetic process;6.18507320915647e-11!GO:0009152;purine ribonucleotide biosynthetic process;6.21651172015471e-11!GO:0030163;protein catabolic process;8.5557586613743e-11!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.87813191661708e-11!GO:0009144;purine nucleoside triphosphate metabolic process;8.87813191661708e-11!GO:0009141;nucleoside triphosphate metabolic process;9.1338926677416e-11!GO:0006915;apoptosis;1.10025019357301e-10!GO:0043687;post-translational protein modification;1.19427673496993e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.65696034505012e-10!GO:0006446;regulation of translational initiation;1.69810622834192e-10!GO:0005783;endoplasmic reticulum;1.98046950129641e-10!GO:0051188;cofactor biosynthetic process;2.32585545785178e-10!GO:0006974;response to DNA damage stimulus;4.47400087917314e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.52148445489405e-10!GO:0008219;cell death;6.21023154648803e-10!GO:0016265;death;6.21023154648803e-10!GO:0009142;nucleoside triphosphate biosynthetic process;6.75227625187205e-10!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.75227625187205e-10!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.01513388511435e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.01513388511435e-09!GO:0008639;small protein conjugating enzyme activity;1.26308630222008e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.70285961073181e-09!GO:0046034;ATP metabolic process;2.04419501653524e-09!GO:0048523;negative regulation of cellular process;2.05546628055269e-09!GO:0005793;ER-Golgi intermediate compartment;2.49978938454642e-09!GO:0005525;GTP binding;2.61328277733024e-09!GO:0008565;protein transporter activity;2.85813446681706e-09!GO:0015986;ATP synthesis coupled proton transport;3.09303144219382e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.09303144219382e-09!GO:0004842;ubiquitin-protein ligase activity;3.16509643450612e-09!GO:0016491;oxidoreductase activity;3.50678639926624e-09!GO:0019787;small conjugating protein ligase activity;3.6640363953176e-09!GO:0030120;vesicle coat;4.06856029363375e-09!GO:0030662;coated vesicle membrane;4.06856029363375e-09!GO:0006913;nucleocytoplasmic transport;4.98766764866421e-09!GO:0006366;transcription from RNA polymerase II promoter;5.13465241767672e-09!GO:0009060;aerobic respiration;5.22293699240292e-09!GO:0006399;tRNA metabolic process;5.90847960518966e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.30948105674401e-09!GO:0051169;nuclear transport;8.39360200528261e-09!GO:0006888;ER to Golgi vesicle-mediated transport;9.61833238204762e-09!GO:0045333;cellular respiration;1.51491074291018e-08!GO:0009117;nucleotide metabolic process;1.67728098822817e-08!GO:0050794;regulation of cellular process;1.72367140094667e-08!GO:0032561;guanyl ribonucleotide binding;1.92122799669147e-08!GO:0019001;guanyl nucleotide binding;1.92122799669147e-08!GO:0006754;ATP biosynthetic process;2.04165984156945e-08!GO:0006753;nucleoside phosphate metabolic process;2.04165984156945e-08!GO:0016881;acid-amino acid ligase activity;2.17392927020298e-08!GO:0005524;ATP binding;2.38384880440373e-08!GO:0048475;coated membrane;3.28403400347122e-08!GO:0030117;membrane coat;3.28403400347122e-08!GO:0032559;adenyl ribonucleotide binding;3.42282018089627e-08!GO:0022402;cell cycle process;3.63606945481013e-08!GO:0007005;mitochondrion organization and biogenesis;3.73770426177198e-08!GO:0017038;protein import;3.74304514901249e-08!GO:0016604;nuclear body;5.80167596626204e-08!GO:0009108;coenzyme biosynthetic process;5.96570954394782e-08!GO:0030554;adenyl nucleotide binding;6.63084304183273e-08!GO:0009056;catabolic process;6.9680544659609e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.9680544659609e-08!GO:0004812;aminoacyl-tRNA ligase activity;6.9680544659609e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.9680544659609e-08!GO:0048519;negative regulation of biological process;7.58301889972616e-08!GO:0051246;regulation of protein metabolic process;7.86570277024871e-08!GO:0006281;DNA repair;9.80058941971673e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;9.93388580656196e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.11026485122057e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.26550579087623e-07!GO:0043038;amino acid activation;1.26550579087623e-07!GO:0006418;tRNA aminoacylation for protein translation;1.26550579087623e-07!GO:0043039;tRNA aminoacylation;1.26550579087623e-07!GO:0051187;cofactor catabolic process;1.31842920600848e-07!GO:0019829;cation-transporting ATPase activity;1.65134342986683e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.7787108723407e-07!GO:0009719;response to endogenous stimulus;1.92287306507854e-07!GO:0005768;endosome;1.92287306507854e-07!GO:0003714;transcription corepressor activity;2.18545136026179e-07!GO:0016072;rRNA metabolic process;2.37214629509202e-07!GO:0006364;rRNA processing;2.6705438087558e-07!GO:0006099;tricarboxylic acid cycle;2.80796445697886e-07!GO:0046356;acetyl-CoA catabolic process;2.80796445697886e-07!GO:0045259;proton-transporting ATP synthase complex;2.86970120621435e-07!GO:0005667;transcription factor complex;2.95873933095294e-07!GO:0006323;DNA packaging;2.99528669682611e-07!GO:0006091;generation of precursor metabolites and energy;3.37280813917953e-07!GO:0043067;regulation of programmed cell death;3.83208768094988e-07!GO:0000074;regulation of progression through cell cycle;4.30301503656552e-07!GO:0051726;regulation of cell cycle;4.47116434220612e-07!GO:0044432;endoplasmic reticulum part;4.51045861308001e-07!GO:0009109;coenzyme catabolic process;5.74697502933281e-07!GO:0006084;acetyl-CoA metabolic process;6.62204919764524e-07!GO:0000278;mitotic cell cycle;6.69548923634717e-07!GO:0042981;regulation of apoptosis;6.71891681145773e-07!GO:0044431;Golgi apparatus part;9.17686737675383e-07!GO:0065004;protein-DNA complex assembly;9.52593897205472e-07!GO:0005762;mitochondrial large ribosomal subunit;1.43492333607462e-06!GO:0000315;organellar large ribosomal subunit;1.43492333607462e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.45408795039222e-06!GO:0006461;protein complex assembly;1.52446772180877e-06!GO:0005635;nuclear envelope;1.52446772180877e-06!GO:0003697;single-stranded DNA binding;1.5700206429609e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.60741824104702e-06!GO:0016887;ATPase activity;1.71637121542127e-06!GO:0016853;isomerase activity;1.71637121542127e-06!GO:0006752;group transfer coenzyme metabolic process;1.73786082652942e-06!GO:0016740;transferase activity;1.87030551377853e-06!GO:0042623;ATPase activity, coupled;1.87251663978092e-06!GO:0031324;negative regulation of cellular metabolic process;1.99511318679997e-06!GO:0051276;chromosome organization and biogenesis;2.10850360029001e-06!GO:0065002;intracellular protein transport across a membrane;2.2898716694426e-06!GO:0031965;nuclear membrane;2.65951522812171e-06!GO:0050789;regulation of biological process;2.72280031361518e-06!GO:0016607;nuclear speck;2.78765794093064e-06!GO:0031252;leading edge;2.78765794093064e-06!GO:0032446;protein modification by small protein conjugation;2.79457516686816e-06!GO:0008026;ATP-dependent helicase activity;3.37578741183965e-06!GO:0043069;negative regulation of programmed cell death;3.60802159053277e-06!GO:0006916;anti-apoptosis;3.713283570418e-06!GO:0016564;transcription repressor activity;3.91643643203492e-06!GO:0043566;structure-specific DNA binding;4.52250516071144e-06!GO:0006260;DNA replication;4.64648724697851e-06!GO:0016567;protein ubiquitination;4.86281004575239e-06!GO:0016563;transcription activator activity;5.78124531751197e-06!GO:0044453;nuclear membrane part;5.89315002101525e-06!GO:0043066;negative regulation of apoptosis;6.03836463644317e-06!GO:0000245;spliceosome assembly;7.86222144122855e-06!GO:0005798;Golgi-associated vesicle;8.04237438494969e-06!GO:0000151;ubiquitin ligase complex;8.44676907561185e-06!GO:0006793;phosphorus metabolic process;8.68869035352563e-06!GO:0006796;phosphate metabolic process;8.68869035352563e-06!GO:0019843;rRNA binding;8.87277700470726e-06!GO:0015980;energy derivation by oxidation of organic compounds;1.10954620575699e-05!GO:0005643;nuclear pore;1.11299440823866e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.20614259908385e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.29099891214431e-05!GO:0004298;threonine endopeptidase activity;1.32442737352849e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.45919605130069e-05!GO:0003713;transcription coactivator activity;1.58937916405291e-05!GO:0009892;negative regulation of metabolic process;1.84564438767389e-05!GO:0005694;chromosome;2.0029696269101e-05!GO:0006333;chromatin assembly or disassembly;2.18435952516906e-05!GO:0016779;nucleotidyltransferase activity;2.22606873539736e-05!GO:0016859;cis-trans isomerase activity;2.37676749175452e-05!GO:0016049;cell growth;2.41602719456882e-05!GO:0045454;cell redox homeostasis;2.42821057350644e-05!GO:0008361;regulation of cell size;2.57639676804669e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.60097762014506e-05!GO:0016310;phosphorylation;2.8213389016541e-05!GO:0046930;pore complex;3.30165347731636e-05!GO:0044440;endosomal part;3.4016339269741e-05!GO:0010008;endosome membrane;3.4016339269741e-05!GO:0000314;organellar small ribosomal subunit;3.41130017110116e-05!GO:0005763;mitochondrial small ribosomal subunit;3.41130017110116e-05!GO:0019222;regulation of metabolic process;3.45950636248564e-05!GO:0004386;helicase activity;3.47484478872298e-05!GO:0000139;Golgi membrane;3.80560960361437e-05!GO:0045786;negative regulation of progression through cell cycle;3.98135377121929e-05!GO:0051170;nuclear import;3.98736046650722e-05!GO:0007264;small GTPase mediated signal transduction;4.07928408290989e-05!GO:0001558;regulation of cell growth;4.51198741555103e-05!GO:0009165;nucleotide biosynthetic process;4.69195769741895e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.69865829232056e-05!GO:0006606;protein import into nucleus;4.76296012510918e-05!GO:0015630;microtubule cytoskeleton;5.35593788414415e-05!GO:0044427;chromosomal part;6.3016285626052e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.37609760791319e-05!GO:0006334;nucleosome assembly;6.44065227068424e-05!GO:0051789;response to protein stimulus;7.15478834642499e-05!GO:0006986;response to unfolded protein;7.15478834642499e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;8.9608732472195e-05!GO:0031497;chromatin assembly;9.28699698005516e-05!GO:0016568;chromatin modification;9.37995998392857e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000103687430808818!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000104530432862212!GO:0005048;signal sequence binding;0.000117018749759564!GO:0006613;cotranslational protein targeting to membrane;0.000117290591508157!GO:0003899;DNA-directed RNA polymerase activity;0.000120377503311636!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000129179758087651!GO:0005788;endoplasmic reticulum lumen;0.000136570169889086!GO:0031968;organelle outer membrane;0.000136570169889086!GO:0005741;mitochondrial outer membrane;0.000136570169889086!GO:0019867;outer membrane;0.000142204485028291!GO:0005769;early endosome;0.000144097297109729!GO:0016023;cytoplasmic membrane-bound vesicle;0.000144483274773135!GO:0043021;ribonucleoprotein binding;0.000145076371322041!GO:0005905;coated pit;0.000149352642480458!GO:0006082;organic acid metabolic process;0.000171621557566067!GO:0031988;membrane-bound vesicle;0.000173021634275247!GO:0005770;late endosome;0.000182596361546565!GO:0019752;carboxylic acid metabolic process;0.000183175836035412!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000191578273165876!GO:0005789;endoplasmic reticulum membrane;0.000207273412517607!GO:0006403;RNA localization;0.0002190531800044!GO:0050657;nucleic acid transport;0.000238232846248635!GO:0051236;establishment of RNA localization;0.000238232846248635!GO:0050658;RNA transport;0.000238232846248635!GO:0006626;protein targeting to mitochondrion;0.000244954475878324!GO:0006414;translational elongation;0.0002728727414828!GO:0043681;protein import into mitochondrion;0.00027556786759927!GO:0006839;mitochondrial transport;0.000284473308280046!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000300888585812341!GO:0005813;centrosome;0.000305248951237589!GO:0030658;transport vesicle membrane;0.000318088579609424!GO:0003724;RNA helicase activity;0.00032261009787141!GO:0030663;COPI coated vesicle membrane;0.00032506700957904!GO:0030126;COPI vesicle coat;0.00032506700957904!GO:0030133;transport vesicle;0.00032558457175929!GO:0016481;negative regulation of transcription;0.000327668871832803!GO:0046483;heterocycle metabolic process;0.000347318533490417!GO:0030029;actin filament-based process;0.000381799773901212!GO:0006612;protein targeting to membrane;0.000382136808542461!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000382996686283859!GO:0051427;hormone receptor binding;0.000401125613824414!GO:0000785;chromatin;0.000406084938179183!GO:0005885;Arp2/3 protein complex;0.000429424336657963!GO:0000087;M phase of mitotic cell cycle;0.000442526105836526!GO:0043284;biopolymer biosynthetic process;0.000450939126048773!GO:0033116;ER-Golgi intermediate compartment membrane;0.000458325371163614!GO:0006891;intra-Golgi vesicle-mediated transport;0.000489413781078975!GO:0022403;cell cycle phase;0.000516814628242297!GO:0007067;mitosis;0.0005399992673986!GO:0007010;cytoskeleton organization and biogenesis;0.000568206480634392!GO:0016787;hydrolase activity;0.000577709533511312!GO:0030137;COPI-coated vesicle;0.0006080700443319!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00066808869424718!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000682152553182001!GO:0031982;vesicle;0.000683335504538227!GO:0007243;protein kinase cascade;0.000686777899479941!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000720574991669225!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000720574991669225!GO:0031410;cytoplasmic vesicle;0.000723581251671515!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000803959421053959!GO:0065009;regulation of a molecular function;0.000805839409163165!GO:0035257;nuclear hormone receptor binding;0.000810186644149244!GO:0051920;peroxiredoxin activity;0.000849340972071571!GO:0008047;enzyme activator activity;0.000864303658533481!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000864879649019421!GO:0043433;negative regulation of transcription factor activity;0.000920379709802159!GO:0045045;secretory pathway;0.000956898434162616!GO:0006383;transcription from RNA polymerase III promoter;0.000982233905348088!GO:0007006;mitochondrial membrane organization and biogenesis;0.000988955103954641!GO:0003729;mRNA binding;0.000993836307797478!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00099628534131143!GO:0015002;heme-copper terminal oxidase activity;0.00099628534131143!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00099628534131143!GO:0004129;cytochrome-c oxidase activity;0.00099628534131143!GO:0030660;Golgi-associated vesicle membrane;0.00103180116164006!GO:0030867;rough endoplasmic reticulum membrane;0.00107328877826308!GO:0051252;regulation of RNA metabolic process;0.00110264043752737!GO:0051301;cell division;0.00113793814001902!GO:0019899;enzyme binding;0.00114833723084738!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00116489595947485!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0011756404681264!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0011756404681264!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0011756404681264!GO:0003746;translation elongation factor activity;0.00117927348155412!GO:0044262;cellular carbohydrate metabolic process;0.00121759436336679!GO:0005815;microtubule organizing center;0.00127584739606069!GO:0030027;lamellipodium;0.0012849781012088!GO:0048522;positive regulation of cellular process;0.00137310782613949!GO:0065007;biological regulation;0.00138740302444384!GO:0043623;cellular protein complex assembly;0.00140720242910749!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00147323808751464!GO:0006778;porphyrin metabolic process;0.00147596406806627!GO:0033013;tetrapyrrole metabolic process;0.00147596406806627!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00149284400885275!GO:0016272;prefoldin complex;0.00150743952735895!GO:0042802;identical protein binding;0.0015099135079498!GO:0030880;RNA polymerase complex;0.00152100594401563!GO:0033673;negative regulation of kinase activity;0.00188382718678617!GO:0006469;negative regulation of protein kinase activity;0.00188382718678617!GO:0030118;clathrin coat;0.00194988472319846!GO:0048487;beta-tubulin binding;0.00204681604538931!GO:0051168;nuclear export;0.00212911122671302!GO:0006520;amino acid metabolic process;0.00217664838734279!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00223996553738791!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00228274299175537!GO:0043488;regulation of mRNA stability;0.00230369131453358!GO:0043487;regulation of RNA stability;0.00230369131453358!GO:0040008;regulation of growth;0.00233016297615373!GO:0015992;proton transport;0.00240266638681251!GO:0008654;phospholipid biosynthetic process;0.00240802521755411!GO:0045941;positive regulation of transcription;0.00248644383293468!GO:0008180;signalosome;0.00248707518568042!GO:0051087;chaperone binding;0.0024877938000539!GO:0051028;mRNA transport;0.00271785051252617!GO:0030127;COPII vesicle coat;0.0027441038447935!GO:0012507;ER to Golgi transport vesicle membrane;0.0027441038447935!GO:0051287;NAD binding;0.00294533935523253!GO:0051348;negative regulation of transferase activity;0.00295356314650998!GO:0042168;heme metabolic process;0.00295876301489398!GO:0006595;polyamine metabolic process;0.00295876301489398!GO:0007050;cell cycle arrest;0.00304532323268501!GO:0031323;regulation of cellular metabolic process;0.003065615917164!GO:0008092;cytoskeletal protein binding;0.00307891031736098!GO:0051329;interphase of mitotic cell cycle;0.00319663516761758!GO:0006818;hydrogen transport;0.00323261665222531!GO:0031072;heat shock protein binding;0.00334076418904091!GO:0015631;tubulin binding;0.00343683518853101!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00344130081745421!GO:0000428;DNA-directed RNA polymerase complex;0.00344130081745421!GO:0030134;ER to Golgi transport vesicle;0.00349410325114655!GO:0005869;dynactin complex;0.00352610359507331!GO:0006354;RNA elongation;0.00354127889589775!GO:0030132;clathrin coat of coated pit;0.00367001690767123!GO:0030659;cytoplasmic vesicle membrane;0.00371421159416717!GO:0048500;signal recognition particle;0.00378404231706504!GO:0008250;oligosaccharyl transferase complex;0.00378700110130623!GO:0045893;positive regulation of transcription, DNA-dependent;0.00421060710164121!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00439700376209615!GO:0008632;apoptotic program;0.00442741358123597!GO:0003711;transcription elongation regulator activity;0.00468739710660967!GO:0035258;steroid hormone receptor binding;0.00506228350519766!GO:0017166;vinculin binding;0.00513843507701984!GO:0008652;amino acid biosynthetic process;0.00517871659547276!GO:0000049;tRNA binding;0.00547630954052493!GO:0006979;response to oxidative stress;0.00550519416852723!GO:0000339;RNA cap binding;0.00557291049473869!GO:0006118;electron transport;0.00578472178111814!GO:0005684;U2-dependent spliceosome;0.00590324305326901!GO:0030041;actin filament polymerization;0.00591691248566566!GO:0008033;tRNA processing;0.00597142137215032!GO:0030125;clathrin vesicle coat;0.00612674286017954!GO:0030665;clathrin coated vesicle membrane;0.00612674286017954!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0061492713989591!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00616700808581941!GO:0016044;membrane organization and biogenesis;0.00623413667409611!GO:0008186;RNA-dependent ATPase activity;0.00652154562215542!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00662213733426438!GO:0006779;porphyrin biosynthetic process;0.00666608606658673!GO:0033014;tetrapyrrole biosynthetic process;0.00666608606658673!GO:0050681;androgen receptor binding;0.00670375505551223!GO:0004576;oligosaccharyl transferase activity;0.00698415216337601!GO:0000096;sulfur amino acid metabolic process;0.00698731045462087!GO:0051325;interphase;0.0069917367277093!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00705060286441943!GO:0018196;peptidyl-asparagine modification;0.00712490499051855!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00712490499051855!GO:0003684;damaged DNA binding;0.00742396372994258!GO:0009116;nucleoside metabolic process;0.00767550291497803!GO:0016197;endosome transport;0.00786117637223557!GO:0006007;glucose catabolic process;0.00803160363188552!GO:0008312;7S RNA binding;0.00807647384619708!GO:0006289;nucleotide-excision repair;0.00814487017721267!GO:0006740;NADPH regeneration;0.00834679903255857!GO:0006098;pentose-phosphate shunt;0.00834679903255857!GO:0046474;glycerophospholipid biosynthetic process;0.00849585162601322!GO:0051128;regulation of cellular component organization and biogenesis;0.00870459426155697!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00888707055489697!GO:0045047;protein targeting to ER;0.00888707055489697!GO:0030119;AP-type membrane coat adaptor complex;0.00904281751135492!GO:0030521;androgen receptor signaling pathway;0.00904281751135492!GO:0044433;cytoplasmic vesicle part;0.00905483995248187!GO:0051540;metal cluster binding;0.00921181883362084!GO:0051536;iron-sulfur cluster binding;0.00921181883362084!GO:0030833;regulation of actin filament polymerization;0.00931830447841909!GO:0045792;negative regulation of cell size;0.00934495671404434!GO:0030308;negative regulation of cell growth;0.00937417975469777!GO:0005862;muscle thin filament tropomyosin;0.00937417975469777!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00953373965583421!GO:0008168;methyltransferase activity;0.0096053921193357!GO:0005791;rough endoplasmic reticulum;0.00967293163331248!GO:0006417;regulation of translation;0.00972066895791274!GO:0001726;ruffle;0.00981876387358997!GO:0032940;secretion by cell;0.00988810949593802!GO:0004674;protein serine/threonine kinase activity;0.00992594484597082!GO:0043022;ribosome binding;0.0100053579487073!GO:0051098;regulation of binding;0.0100530103406396!GO:0005758;mitochondrial intermembrane space;0.0100566894278602!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0101508347467037!GO:0007021;tubulin folding;0.0105162898307262!GO:0008139;nuclear localization sequence binding;0.0105162898307262!GO:0004177;aminopeptidase activity;0.0106840716096488!GO:0003690;double-stranded DNA binding;0.0109438406420723!GO:0045892;negative regulation of transcription, DNA-dependent;0.0110315784074459!GO:0050811;GABA receptor binding;0.011075947889016!GO:0006350;transcription;0.0111587939011154!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0112098343042633!GO:0015399;primary active transmembrane transporter activity;0.0112098343042633!GO:0019206;nucleoside kinase activity;0.0113473605301845!GO:0005096;GTPase activator activity;0.0113927335223809!GO:0048471;perinuclear region of cytoplasm;0.0114322276611927!GO:0006352;transcription initiation;0.0114432320363457!GO:0016741;transferase activity, transferring one-carbon groups;0.0118137521455146!GO:0016363;nuclear matrix;0.0121301058217933!GO:0030503;regulation of cell redox homeostasis;0.0124422125382782!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0124480510055505!GO:0008154;actin polymerization and/or depolymerization;0.0124856658034108!GO:0031901;early endosome membrane;0.0127297909804775!GO:0031529;ruffle organization and biogenesis;0.0127301042098709!GO:0022406;membrane docking;0.012797346511666!GO:0048278;vesicle docking;0.012797346511666!GO:0009112;nucleobase metabolic process;0.0128074097225662!GO:0006783;heme biosynthetic process;0.0130631153479861!GO:0004004;ATP-dependent RNA helicase activity;0.0132831446287243!GO:0000082;G1/S transition of mitotic cell cycle;0.0144794146830551!GO:0006892;post-Golgi vesicle-mediated transport;0.0147611128185061!GO:0005801;cis-Golgi network;0.0151854083293787!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.01610390996033!GO:0051539;4 iron, 4 sulfur cluster binding;0.0163424685559083!GO:0031625;ubiquitin protein ligase binding;0.0165475919148355!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0168672785512558!GO:0005832;chaperonin-containing T-complex;0.0169273303269734!GO:0048144;fibroblast proliferation;0.0169273303269734!GO:0048145;regulation of fibroblast proliferation;0.0169273303269734!GO:0051101;regulation of DNA binding;0.0170434673019359!GO:0048468;cell development;0.0174275183820251!GO:0007242;intracellular signaling cascade;0.0181807066762199!GO:0030131;clathrin adaptor complex;0.018190262681068!GO:0000786;nucleosome;0.018190262681068!GO:0051052;regulation of DNA metabolic process;0.018190262681068!GO:0010468;regulation of gene expression;0.0184309442282502!GO:0050662;coenzyme binding;0.0189065160921011!GO:0006261;DNA-dependent DNA replication;0.0189830049423314!GO:0032984;macromolecular complex disassembly;0.0194877775479714!GO:0006769;nicotinamide metabolic process;0.0196217952879715!GO:0000059;protein import into nucleus, docking;0.0196247804217519!GO:0035035;histone acetyltransferase binding;0.019638355853359!GO:0022890;inorganic cation transmembrane transporter activity;0.019761248336376!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0200097428753681!GO:0000279;M phase;0.0200198052622154!GO:0012506;vesicle membrane;0.020092798915716!GO:0005773;vacuole;0.0201795945882108!GO:0006904;vesicle docking during exocytosis;0.0202259174776888!GO:0043407;negative regulation of MAP kinase activity;0.0204036350185778!GO:0022408;negative regulation of cell-cell adhesion;0.0204714975897307!GO:0008629;induction of apoptosis by intracellular signals;0.0204998709117239!GO:0009119;ribonucleoside metabolic process;0.0211693556256426!GO:0043068;positive regulation of programmed cell death;0.021230218561242!GO:0006402;mRNA catabolic process;0.0214178383233017!GO:0008637;apoptotic mitochondrial changes;0.0215033695401994!GO:0030508;thiol-disulfide exchange intermediate activity;0.0217428433025672!GO:0006749;glutathione metabolic process;0.0217883600871825!GO:0043065;positive regulation of apoptosis;0.0230432665939652!GO:0008022;protein C-terminus binding;0.023536328640596!GO:0031326;regulation of cellular biosynthetic process;0.0236271828428398!GO:0044452;nucleolar part;0.0240007317013601!GO:0006401;RNA catabolic process;0.0243254350391118!GO:0005874;microtubule;0.024400829359736!GO:0000209;protein polyubiquitination;0.0244826369235144!GO:0006914;autophagy;0.0252655043138487!GO:0006739;NADP metabolic process;0.0252663987614982!GO:0043624;cellular protein complex disassembly;0.0255066051888164!GO:0031371;ubiquitin conjugating enzyme complex;0.0255774661068216!GO:0006144;purine base metabolic process;0.0258606477350552!GO:0016251;general RNA polymerase II transcription factor activity;0.026228746552969!GO:0050178;phenylpyruvate tautomerase activity;0.0262398023975698!GO:0006220;pyrimidine nucleotide metabolic process;0.0263103109588239!GO:0009225;nucleotide-sugar metabolic process;0.0267652867213945!GO:0046128;purine ribonucleoside metabolic process;0.0268057404898475!GO:0042278;purine nucleoside metabolic process;0.0268057404898475!GO:0006733;oxidoreduction coenzyme metabolic process;0.0274712979817312!GO:0008538;proteasome activator activity;0.0276228816346308!GO:0005657;replication fork;0.0280209939970418!GO:0006611;protein export from nucleus;0.0280622790811598!GO:0031418;L-ascorbic acid binding;0.028646168375043!GO:0009081;branched chain family amino acid metabolic process;0.0289998235794719!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0290038240620692!GO:0031970;organelle envelope lumen;0.0298564181045273!GO:0008320;protein transmembrane transporter activity;0.0304903795078219!GO:0008601;protein phosphatase type 2A regulator activity;0.0307593764480346!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0308052385491909!GO:0048146;positive regulation of fibroblast proliferation;0.0312302979089284!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0312302979089284!GO:0050790;regulation of catalytic activity;0.0315378925045751!GO:0004448;isocitrate dehydrogenase activity;0.0317683168466028!GO:0048518;positive regulation of biological process;0.032036062209785!GO:0006519;amino acid and derivative metabolic process;0.032036062209785!GO:0009889;regulation of biosynthetic process;0.0331798295177123!GO:0022884;macromolecule transmembrane transporter activity;0.034550262938316!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.034550262938316!GO:0043241;protein complex disassembly;0.0348010278323588!GO:0045926;negative regulation of growth;0.0352599681884013!GO:0032507;maintenance of cellular protein localization;0.0356962109560715!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0359183280744765!GO:0030145;manganese ion binding;0.0359689268690787!GO:0015036;disulfide oxidoreductase activity;0.0361366426902886!GO:0006607;NLS-bearing substrate import into nucleus;0.0364854105511445!GO:0006790;sulfur metabolic process;0.0372077912776892!GO:0006950;response to stress;0.0387117219660279!GO:0045936;negative regulation of phosphate metabolic process;0.0388330146189048!GO:0046365;monosaccharide catabolic process;0.0394792456145102!GO:0016860;intramolecular oxidoreductase activity;0.0395700834732246!GO:0000188;inactivation of MAPK activity;0.0396922745213495!GO:0006767;water-soluble vitamin metabolic process;0.0402066038683687!GO:0005092;GDP-dissociation inhibitor activity;0.040761700756048!GO:0031902;late endosome membrane;0.0407651253983984!GO:0008287;protein serine/threonine phosphatase complex;0.040852264992555!GO:0051059;NF-kappaB binding;0.0408912507572371!GO:0006275;regulation of DNA replication;0.0408912507572371!GO:0016301;kinase activity;0.0408912507572371!GO:0001953;negative regulation of cell-matrix adhesion;0.0408912507572371!GO:0005819;spindle;0.0412084364008722!GO:0030518;steroid hormone receptor signaling pathway;0.0414304369412774!GO:0019318;hexose metabolic process;0.0414304369412774!GO:0031272;regulation of pseudopodium formation;0.0414304369412774!GO:0031269;pseudopodium formation;0.0414304369412774!GO:0031344;regulation of cell projection organization and biogenesis;0.0414304369412774!GO:0031268;pseudopodium organization and biogenesis;0.0414304369412774!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0414304369412774!GO:0031274;positive regulation of pseudopodium formation;0.0414304369412774!GO:0005669;transcription factor TFIID complex;0.0418829757332097!GO:0046822;regulation of nucleocytoplasmic transport;0.0420339286751697!GO:0030032;lamellipodium biogenesis;0.0420358958643445!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.042969799041756!GO:0006405;RNA export from nucleus;0.0435212444376556!GO:0048037;cofactor binding;0.0438326998352957!GO:0005996;monosaccharide metabolic process;0.0441428218948072!GO:0004680;casein kinase activity;0.0443094129561528!GO:0030176;integral to endoplasmic reticulum membrane;0.0445026591694821!GO:0000118;histone deacetylase complex;0.0446019803079488!GO:0030911;TPR domain binding;0.0452078298107091!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0452859965799373!GO:0046870;cadmium ion binding;0.0458360186596249!GO:0031124;mRNA 3'-end processing;0.0458407272416869!GO:0005484;SNAP receptor activity;0.046873029424767!GO:0006096;glycolysis;0.0478059930686519!GO:0009967;positive regulation of signal transduction;0.0480282651469592!GO:0022411;cellular component disassembly;0.0480461996645426!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0482831169613614!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0482831169613614!GO:0000287;magnesium ion binding;0.0483220215391019!GO:0006302;double-strand break repair;0.0483220215391019!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0483220215391019!GO:0033043;regulation of organelle organization and biogenesis;0.0483220215391019!GO:0007265;Ras protein signal transduction;0.04870227677944!GO:0043086;negative regulation of catalytic activity;0.0488621008290153!GO:0008017;microtubule binding;0.0499606170671561 | |||
|sample_id=14313 | |sample_id=14313 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|top_motifs=HIF1A:1.74863286909;GZF1:1.59034682509;HES1:1.57081864035;GLI1..3:1.39321451267;UFEwm:1.38447353484;XBP1:1.3278240239;TAL1_TCF{3,4,12}:1.28182971698;NKX2-2,8:1.2811474997;ARID5B:1.27719994348;NR3C1:1.27192839246;TFAP4:1.20849871563;HSF1,2:1.1792745156;MAFB:1.15468534621;HMX1:1.13216090957;ZIC1..3:1.08943582617;HAND1,2:1.08108228803;TFCP2:1.08052814487;HOX{A5,B5}:1.06409537223;ALX1:1.01763325136;ESR1:1.00956717228;NFE2L1:0.998986218931;PAX1,9:0.989529771332;GCM1,2:0.978516731923;KLF4:0.976088012987;STAT5{A,B}:0.923661022401;ZNF148:0.9217579465;NKX3-2:0.918844542589;ZBTB6:0.910478212583;POU3F1..4:0.895168616483;SMAD1..7,9:0.863724292746;NR5A1,2:0.847603343342;ALX4:0.824222590703;LHX3,4:0.815625525299;HMGA1,2:0.814157672969;ZNF423:0.800709384375;SRF:0.786156656848;EVI1:0.746825179283;EN1,2:0.726939147793;TBX4,5:0.726880043616;PAX6:0.718418624101;RXR{A,B,G}:0.674000640467;EBF1:0.661247325467;TP53:0.651746091048;HOXA9_MEIS1:0.642968786431;FOXM1:0.618448464561;PDX1:0.617898072905;NR1H4:0.606293117355;ZNF238:0.594205634159;IKZF1:0.584852353265;FOX{I1,J2}:0.557478868356;PAX5:0.527379655607;FOXL1:0.499964248642;bHLH_family:0.477655756418;HOX{A4,D4}:0.467932839306;TEF:0.435691409004;AIRE:0.431903688194;MTF1:0.422598507563;ONECUT1,2:0.403782177937;CRX:0.402297442374;NKX3-1:0.395823056511;TEAD1:0.394603512773;CDC5L:0.39373468398;HLF:0.375079557098;NFE2L2:0.360704625142;POU6F1:0.347834998498;PBX1:0.319703053369;RREB1:0.314820864376;PRDM1:0.311618681552;MZF1:0.310946858916;PATZ1:0.308919561688;GATA4:0.295517971971;FOXQ1:0.288302487377;GTF2I:0.26627069068;TOPORS:0.265042547768;CEBPA,B_DDIT3:0.239474876976;GFI1B:0.238505958368;NHLH1,2:0.225728410088;NFATC1..3:0.221217551671;ELK1,4_GABP{A,B1}:0.210127991205;LMO2:0.179104548613;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.160836409845;SOX17:0.154414378525;AR:0.150746632868;NANOG{mouse}:0.149519965595;ADNP_IRX_SIX_ZHX:0.143588316688;BACH2:0.141315372752;PAX8:0.113760225899;AHR_ARNT_ARNT2:0.111680776723;TFAP2{A,C}:0.1082250947;TLX1..3_NFIC{dimer}:0.0967133884146;TBP:0.0716502422987;REST:0.06196910441;ATF6:0.0447968174365;FOSL2:0.0398468239675;ZNF384:0.0332492959582;HNF1A:0.027183004027;GTF2A1,2:0.022371748511;NR6A1:0.0197105315923;YY1:0.00663384286643;FOS_FOS{B,L1}_JUN{B,D}:-0.0262347574022;SPZ1:-0.0491558079776;NFIX:-0.0661719090053;MYBL2:-0.0670203460805;VSX1,2:-0.0698925697084;RUNX1..3:-0.0740999325616;TFAP2B:-0.0827575235694;LEF1_TCF7_TCF7L1,2:-0.118471631881;STAT2,4,6:-0.118999528343;MTE{core}:-0.124972034189;RFX1:-0.128898078419;POU1F1:-0.140218391538;MYB:-0.145910006708;DMAP1_NCOR{1,2}_SMARC:-0.156897386548;ZNF143:-0.160718063436;XCPE1{core}:-0.170914551717;NFE2:-0.171946670472;ESRRA:-0.196876077325;PPARG:-0.201692767976;EP300:-0.204438851523;HIC1:-0.211680963448;FOXP3:-0.223350404385;RXRA_VDR{dimer}:-0.239701514566;NFKB1_REL_RELA:-0.242419642912;HNF4A_NR2F1,2:-0.256619127657;ATF4:-0.257299317139;PAX3,7:-0.260978841516;MEF2{A,B,C,D}:-0.265393328425;TGIF1:-0.284785397801;T:-0.296688318404;SPI1:-0.302006905438;MYFfamily:-0.31090723037;DBP:-0.318584610211;NRF1:-0.323174953496;NFIL3:-0.323606009911;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.334497924801;ZFP161:-0.368945270976;SNAI1..3:-0.369714705012;NKX6-1,2:-0.372242837227;SOX5:-0.380160125497;PRRX1,2:-0.389862972933;ETS1,2:-0.422657242459;MAZ:-0.422674677301;NKX2-1,4:-0.422984826388;POU2F1..3:-0.427709521712;PAX4:-0.436433145024;GATA6:-0.451365692336;POU5F1:-0.452253963281;JUN:-0.500829219114;ZEB1:-0.504645040123;ZBTB16:-0.525799354318;CREB1:-0.54138397925;RFX2..5_RFXANK_RFXAP:-0.545650126939;HOX{A6,A7,B6,B7}:-0.57502565136;GFI1:-0.604006448725;SPIB:-0.609648018143;PAX2:-0.609906902209;NKX2-3_NKX2-5:-0.635102592684;ELF1,2,4:-0.696484702558;MED-1{core}:-0.714548880051;FOX{D1,D2}:-0.72707179838;RORA:-0.741379417791;SOX2:-0.748521950046;OCT4_SOX2{dimer}:-0.752702620861;FOX{F1,F2,J1}:-0.766437946463;IKZF2:-0.779920651791;ATF2:-0.823582021719;FOXO1,3,4:-0.834376740783;IRF1,2:-0.83941457194;E2F1..5:-0.843867365248;FOXD3:-0.852469919317;EGR1..3:-0.866670718138;BPTF:-0.909902789131;MYOD1:-0.912708509602;NANOG:-0.947478419329;STAT1,3:-0.997314496311;ATF5_CREB3:-0.997772809939;SP1:-1.01481303373;IRF7:-1.02427629911;CUX2:-1.02849368159;SOX{8,9,10}:-1.04033221724;FOXA2:-1.05238225212;BREu{core}:-1.0579659924;CDX1,2,4:-1.12093289859;FOXN1:-1.12390507584;TLX2:-1.17565952491;TFDP1:-1.19072451076;PITX1..3:-1.44857642418;NFY{A,B,C}:-1.51036799249;SREBF1,2:-1.52325035276;FOXP1:-1.55819127161;HBP1_HMGB_SSRP1_UBTF:-1.77413877839;RBPJ:-1.87918647287 | |top_motifs=HIF1A:1.74863286909;GZF1:1.59034682509;HES1:1.57081864035;GLI1..3:1.39321451267;UFEwm:1.38447353484;XBP1:1.3278240239;TAL1_TCF{3,4,12}:1.28182971698;NKX2-2,8:1.2811474997;ARID5B:1.27719994348;NR3C1:1.27192839246;TFAP4:1.20849871563;HSF1,2:1.1792745156;MAFB:1.15468534621;HMX1:1.13216090957;ZIC1..3:1.08943582617;HAND1,2:1.08108228803;TFCP2:1.08052814487;HOX{A5,B5}:1.06409537223;ALX1:1.01763325136;ESR1:1.00956717228;NFE2L1:0.998986218931;PAX1,9:0.989529771332;GCM1,2:0.978516731923;KLF4:0.976088012987;STAT5{A,B}:0.923661022401;ZNF148:0.9217579465;NKX3-2:0.918844542589;ZBTB6:0.910478212583;POU3F1..4:0.895168616483;SMAD1..7,9:0.863724292746;NR5A1,2:0.847603343342;ALX4:0.824222590703;LHX3,4:0.815625525299;HMGA1,2:0.814157672969;ZNF423:0.800709384375;SRF:0.786156656848;EVI1:0.746825179283;EN1,2:0.726939147793;TBX4,5:0.726880043616;PAX6:0.718418624101;RXR{A,B,G}:0.674000640467;EBF1:0.661247325467;TP53:0.651746091048;HOXA9_MEIS1:0.642968786431;FOXM1:0.618448464561;PDX1:0.617898072905;NR1H4:0.606293117355;ZNF238:0.594205634159;IKZF1:0.584852353265;FOX{I1,J2}:0.557478868356;PAX5:0.527379655607;FOXL1:0.499964248642;bHLH_family:0.477655756418;HOX{A4,D4}:0.467932839306;TEF:0.435691409004;AIRE:0.431903688194;MTF1:0.422598507563;ONECUT1,2:0.403782177937;CRX:0.402297442374;NKX3-1:0.395823056511;TEAD1:0.394603512773;CDC5L:0.39373468398;HLF:0.375079557098;NFE2L2:0.360704625142;POU6F1:0.347834998498;PBX1:0.319703053369;RREB1:0.314820864376;PRDM1:0.311618681552;MZF1:0.310946858916;PATZ1:0.308919561688;GATA4:0.295517971971;FOXQ1:0.288302487377;GTF2I:0.26627069068;TOPORS:0.265042547768;CEBPA,B_DDIT3:0.239474876976;GFI1B:0.238505958368;NHLH1,2:0.225728410088;NFATC1..3:0.221217551671;ELK1,4_GABP{A,B1}:0.210127991205;LMO2:0.179104548613;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.160836409845;SOX17:0.154414378525;AR:0.150746632868;NANOG{mouse}:0.149519965595;ADNP_IRX_SIX_ZHX:0.143588316688;BACH2:0.141315372752;PAX8:0.113760225899;AHR_ARNT_ARNT2:0.111680776723;TFAP2{A,C}:0.1082250947;TLX1..3_NFIC{dimer}:0.0967133884146;TBP:0.0716502422987;REST:0.06196910441;ATF6:0.0447968174365;FOSL2:0.0398468239675;ZNF384:0.0332492959582;HNF1A:0.027183004027;GTF2A1,2:0.022371748511;NR6A1:0.0197105315923;YY1:0.00663384286643;FOS_FOS{B,L1}_JUN{B,D}:-0.0262347574022;SPZ1:-0.0491558079776;NFIX:-0.0661719090053;MYBL2:-0.0670203460805;VSX1,2:-0.0698925697084;RUNX1..3:-0.0740999325616;TFAP2B:-0.0827575235694;LEF1_TCF7_TCF7L1,2:-0.118471631881;STAT2,4,6:-0.118999528343;MTE{core}:-0.124972034189;RFX1:-0.128898078419;POU1F1:-0.140218391538;MYB:-0.145910006708;DMAP1_NCOR{1,2}_SMARC:-0.156897386548;ZNF143:-0.160718063436;XCPE1{core}:-0.170914551717;NFE2:-0.171946670472;ESRRA:-0.196876077325;PPARG:-0.201692767976;EP300:-0.204438851523;HIC1:-0.211680963448;FOXP3:-0.223350404385;RXRA_VDR{dimer}:-0.239701514566;NFKB1_REL_RELA:-0.242419642912;HNF4A_NR2F1,2:-0.256619127657;ATF4:-0.257299317139;PAX3,7:-0.260978841516;MEF2{A,B,C,D}:-0.265393328425;TGIF1:-0.284785397801;T:-0.296688318404;SPI1:-0.302006905438;MYFfamily:-0.31090723037;DBP:-0.318584610211;NRF1:-0.323174953496;NFIL3:-0.323606009911;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.334497924801;ZFP161:-0.368945270976;SNAI1..3:-0.369714705012;NKX6-1,2:-0.372242837227;SOX5:-0.380160125497;PRRX1,2:-0.389862972933;ETS1,2:-0.422657242459;MAZ:-0.422674677301;NKX2-1,4:-0.422984826388;POU2F1..3:-0.427709521712;PAX4:-0.436433145024;GATA6:-0.451365692336;POU5F1:-0.452253963281;JUN:-0.500829219114;ZEB1:-0.504645040123;ZBTB16:-0.525799354318;CREB1:-0.54138397925;RFX2..5_RFXANK_RFXAP:-0.545650126939;HOX{A6,A7,B6,B7}:-0.57502565136;GFI1:-0.604006448725;SPIB:-0.609648018143;PAX2:-0.609906902209;NKX2-3_NKX2-5:-0.635102592684;ELF1,2,4:-0.696484702558;MED-1{core}:-0.714548880051;FOX{D1,D2}:-0.72707179838;RORA:-0.741379417791;SOX2:-0.748521950046;OCT4_SOX2{dimer}:-0.752702620861;FOX{F1,F2,J1}:-0.766437946463;IKZF2:-0.779920651791;ATF2:-0.823582021719;FOXO1,3,4:-0.834376740783;IRF1,2:-0.83941457194;E2F1..5:-0.843867365248;FOXD3:-0.852469919317;EGR1..3:-0.866670718138;BPTF:-0.909902789131;MYOD1:-0.912708509602;NANOG:-0.947478419329;STAT1,3:-0.997314496311;ATF5_CREB3:-0.997772809939;SP1:-1.01481303373;IRF7:-1.02427629911;CUX2:-1.02849368159;SOX{8,9,10}:-1.04033221724;FOXA2:-1.05238225212;BREu{core}:-1.0579659924;CDX1,2,4:-1.12093289859;FOXN1:-1.12390507584;TLX2:-1.17565952491;TFDP1:-1.19072451076;PITX1..3:-1.44857642418;NFY{A,B,C}:-1.51036799249;SREBF1,2:-1.52325035276;FOXP1:-1.55819127161;HBP1_HMGB_SSRP1_UBTF:-1.77413877839;RBPJ:-1.87918647287 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14313-155D2;search_select_hide=table117:FF:14313-155D2 | |||
}} | }} | ||
Latest revision as of 19:06, 4 June 2020
| Name: | Smooth Muscle Cells - Aortic, donor0 (cytoplasmic fraction) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12401 |
| Sample type: | fractionations and perturbations |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12401
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12401
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0749 |
| 10 | 10 | 0.37 |
| 100 | 100 | 0.901 |
| 101 | 101 | 0.981 |
| 102 | 102 | 0.826 |
| 103 | 103 | 0.0367 |
| 104 | 104 | 0.539 |
| 105 | 105 | 0.669 |
| 106 | 106 | 0.0366 |
| 107 | 107 | 0.784 |
| 108 | 108 | 0.223 |
| 109 | 109 | 0.0359 |
| 11 | 11 | 0.0535 |
| 110 | 110 | 0.144 |
| 111 | 111 | 0.295 |
| 112 | 112 | 0.107 |
| 113 | 113 | 0.101 |
| 114 | 114 | 0.00252 |
| 115 | 115 | 2.7549e-4 |
| 116 | 116 | 0.12 |
| 117 | 117 | 0.244 |
| 118 | 118 | 0.292 |
| 119 | 119 | 0.251 |
| 12 | 12 | 0.701 |
| 120 | 120 | 0.0378 |
| 121 | 121 | 0.716 |
| 122 | 122 | 0.46 |
| 123 | 123 | 0.0882 |
| 124 | 124 | 0.464 |
| 125 | 125 | 0.951 |
| 126 | 126 | 0.797 |
| 127 | 127 | 0.15 |
| 128 | 128 | 0.0918 |
| 129 | 129 | 0.364 |
| 13 | 13 | 0.821 |
| 130 | 130 | 0.631 |
| 131 | 131 | 0.418 |
| 132 | 132 | 0.994 |
| 133 | 133 | 0.564 |
| 134 | 134 | 0.473 |
| 135 | 135 | 0.411 |
| 136 | 136 | 0.982 |
| 137 | 137 | 0.233 |
| 138 | 138 | 0.505 |
| 139 | 139 | 0.0451 |
| 14 | 14 | 0.58 |
| 140 | 140 | 0.727 |
| 141 | 141 | 0.825 |
| 142 | 142 | 0.491 |
| 143 | 143 | 0.0513 |
| 144 | 144 | 0.735 |
| 145 | 145 | 0.733 |
| 146 | 146 | 0.929 |
| 147 | 147 | 0.169 |
| 148 | 148 | 0.375 |
| 149 | 149 | 0.0504 |
| 15 | 15 | 0.352 |
| 150 | 150 | 0.514 |
| 151 | 151 | 0.572 |
| 152 | 152 | 0.0827 |
| 153 | 153 | 0.184 |
| 154 | 154 | 0.582 |
| 155 | 155 | 0.235 |
| 156 | 156 | 0.878 |
| 157 | 157 | 0.834 |
| 158 | 158 | 0.0964 |
| 159 | 159 | 0.19 |
| 16 | 16 | 0.037 |
| 160 | 160 | 0.128 |
| 161 | 161 | 0.519 |
| 162 | 162 | 0.913 |
| 163 | 163 | 0.693 |
| 164 | 164 | 0.106 |
| 165 | 165 | 0.5 |
| 166 | 166 | 0.875 |
| 167 | 167 | 0.856 |
| 168 | 168 | 0.217 |
| 169 | 169 | 0.0211 |
| 17 | 17 | 0.304 |
| 18 | 18 | 0.031 |
| 19 | 19 | 0.0894 |
| 2 | 2 | 0.269 |
| 20 | 20 | 0.567 |
| 21 | 21 | 0.135 |
| 22 | 22 | 0.146 |
| 23 | 23 | 0.0401 |
| 24 | 24 | 0.763 |
| 25 | 25 | 0.841 |
| 26 | 26 | 0.198 |
| 27 | 27 | 0.189 |
| 28 | 28 | 0.4 |
| 29 | 29 | 0.187 |
| 3 | 3 | 0.15 |
| 30 | 30 | 0.69 |
| 31 | 31 | 0.317 |
| 32 | 32 | 1.14807e-4 |
| 33 | 33 | 0.496 |
| 34 | 34 | 0.561 |
| 35 | 35 | 0.344 |
| 36 | 36 | 0.551 |
| 37 | 37 | 0.0584 |
| 38 | 38 | 0.607 |
| 39 | 39 | 0.229 |
| 4 | 4 | 0.615 |
| 40 | 40 | 0.66 |
| 41 | 41 | 0.923 |
| 42 | 42 | 0.287 |
| 43 | 43 | 0.305 |
| 44 | 44 | 0.0249 |
| 45 | 45 | 0.644 |
| 46 | 46 | 0.0277 |
| 47 | 47 | 0.192 |
| 48 | 48 | 0.415 |
| 49 | 49 | 0.345 |
| 5 | 5 | 0.571 |
| 50 | 50 | 0.752 |
| 51 | 51 | 0.497 |
| 52 | 52 | 0.681 |
| 53 | 53 | 0.51 |
| 54 | 54 | 0.538 |
| 55 | 55 | 0.193 |
| 56 | 56 | 0.406 |
| 57 | 57 | 0.55 |
| 58 | 58 | 0.4 |
| 59 | 59 | 0.00844 |
| 6 | 6 | 0.668 |
| 60 | 60 | 0.363 |
| 61 | 61 | 0.539 |
| 62 | 62 | 0.106 |
| 63 | 63 | 0.158 |
| 64 | 64 | 0.321 |
| 65 | 65 | 0.134 |
| 66 | 66 | 0.406 |
| 67 | 67 | 0.396 |
| 68 | 68 | 0.121 |
| 69 | 69 | 0.254 |
| 7 | 7 | 0.774 |
| 70 | 70 | 0.0131 |
| 71 | 71 | 0.0571 |
| 72 | 72 | 0.997 |
| 73 | 73 | 0.0796 |
| 74 | 74 | 0.135 |
| 75 | 75 | 0.197 |
| 76 | 76 | 0.705 |
| 77 | 77 | 0.00441 |
| 78 | 78 | 0.428 |
| 79 | 79 | 3.81072e-5 |
| 8 | 8 | 0.0387 |
| 80 | 80 | 0.798 |
| 81 | 81 | 0.389 |
| 82 | 82 | 0.0294 |
| 83 | 83 | 0.343 |
| 84 | 84 | 0.13 |
| 85 | 85 | 0.0225 |
| 86 | 86 | 0.433 |
| 87 | 87 | 0.164 |
| 88 | 88 | 0.685 |
| 89 | 89 | 0.00352 |
| 9 | 9 | 0.488 |
| 90 | 90 | 0.32 |
| 91 | 91 | 0.222 |
| 92 | 92 | 0.103 |
| 93 | 93 | 0.602 |
| 94 | 94 | 0.0427 |
| 95 | 95 | 0.135 |
| 96 | 96 | 0.768 |
| 97 | 97 | 0.738 |
| 98 | 98 | 0.836 |
| 99 | 99 | 0.0247 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12401
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000664 Smooth Muscle Cells - Aortic, (cytoplasmic fraction) sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000405 (cytoplasmic fraction sample)
0000168 (human aortic smooth muscle cell sample)
0000664 (Smooth Muscle Cells - Aortic, (cytoplasmic fraction) sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
