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{{f5samples
{{f5samples
|id=FF:11248-116E6
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000075,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000982,UBERON:0001062,UBERON:0001066,UBERON:0001130,UBERON:0001137,UBERON:0001434,UBERON:0001468,UBERON:0001995,UBERON:0002050,UBERON:0002090,UBERON:0002100,UBERON:0002204,UBERON:0002209,UBERON:0002213,UBERON:0002216,UBERON:0002329,UBERON:0002384,UBERON:0002418,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003089,UBERON:0003104,UBERON:0003586,UBERON:0004120,UBERON:0004267,UBERON:0004288,UBERON:0004715,UBERON:0004755,UBERON:0004765,UBERON:0004770,UBERON:0004905,UBERON:0005174,UBERON:0005177,UBERON:0005291,UBERON:0005423,UBERON:0005944,UBERON:0006444,UBERON:0009142
|name=Anulus Pulposus Cell, donor1
|sample_id=11248
|rna_tube_id=116E6
|rna_box=116
|rna_position=E6
|sample_cell_lot=
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=lot:5026
|rna_catalog_number=SC4815
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=spinal cord
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=anulus fibrosus cell of intervertebral disc
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs10876,LSID703,release008,COMPLETED
|profile_cagescan=NCig10045,,,
|profile_srnaseq=SRhi10004,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000144,CL:0000255,CL:0000548,CL:0002320,CL:0002371,CL:0002602
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000144,CL:0000255,CL:0000548,CL:0002320,CL:0002371,CL:0002602
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000075,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000982,UBERON:0001062,UBERON:0001066,UBERON:0001130,UBERON:0001137,UBERON:0001434,UBERON:0001468,UBERON:0001995,UBERON:0002050,UBERON:0002090,UBERON:0002100,UBERON:0002204,UBERON:0002209,UBERON:0002213,UBERON:0002216,UBERON:0002329,UBERON:0002384,UBERON:0002418,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003089,UBERON:0003104,UBERON:0003586,UBERON:0004120,UBERON:0004267,UBERON:0004288,UBERON:0004715,UBERON:0004755,UBERON:0004765,UBERON:0004770,UBERON:0004905,UBERON:0005174,UBERON:0005177,UBERON:0005291,UBERON:0005423,UBERON:0005944,UBERON:0006444,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|comment=
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|creation_date=
|def=
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 33:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=RXR{A,B,G}:2.08726327293;ZNF238:1.89133974462;GZF1:1.61000225261;HES1:1.46669967332;ATF6:1.44060604715;TAL1_TCF{3,4,12}:1.34114991198;ZNF423:1.2680145207;PDX1:1.24916770314;GLI1..3:1.19136591572;NFIX:1.19120118775;EBF1:1.18971454619;TFAP4:1.16321895193;ESR1:1.08234124767;FOXL1:1.0787746566;HOX{A5,B5}:1.06421945743;GFI1B:1.03948750177;NR1H4:1.02432729488;NR6A1:0.919196621437;MYBL2:0.885548515931;NR3C1:0.85782309293;TLX1..3_NFIC{dimer}:0.8555578635;PATZ1:0.854383907348;MAFB:0.837744061635;NFATC1..3:0.815498661661;EN1,2:0.805288043692;YY1:0.768640459648;SOX5:0.763346994221;ALX4:0.741169747036;NANOG{mouse}:0.736955713089;NKX6-1,2:0.719497890968;AIRE:0.714993463918;GTF2A1,2:0.709070602389;KLF4:0.704882135292;DMAP1_NCOR{1,2}_SMARC:0.682466670731;ZBTB6:0.679521880067;ZNF384:0.673280692017;PAX1,9:0.662884975526;MZF1:0.652749334763;TBX4,5:0.621964268957;UFEwm:0.618712106803;ZIC1..3:0.612784591973;TEAD1:0.598018283107;DBP:0.583783277681;PAX5:0.58335218244;GTF2I:0.568811487349;ARID5B:0.562084201562;STAT1,3:0.554546639126;NKX2-2,8:0.552129674273;NKX2-3_NKX2-5:0.541071606147;NHLH1,2:0.53238352031;FOXO1,3,4:0.519985475428;SRF:0.490008435926;SPZ1:0.473040990966;HAND1,2:0.45952079625;LHX3,4:0.438538537103;MYFfamily:0.424036615691;SMAD1..7,9:0.421762570239;TFCP2:0.41471563813;NFE2L2:0.40933998922;FOXD3:0.37655299583;RREB1:0.362246953113;AHR_ARNT_ARNT2:0.361706772584;IKZF1:0.346173361927;FOXQ1:0.339333924606;STAT2,4,6:0.33228887417;MAZ:0.318372587267;BACH2:0.295570486925;SOX17:0.29109940042;NKX3-1:0.273220332664;ESRRA:0.271342951486;HSF1,2:0.266574905709;RBPJ:0.252569034995;PRRX1,2:0.248769467428;ONECUT1,2:0.247820950327;NFE2:0.242746294721;HOX{A6,A7,B6,B7}:0.234397423454;RFX1:0.222746762475;HMGA1,2:0.221800536709;SREBF1,2:0.205977976345;GATA4:0.195597565733;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.190539239997;IKZF2:0.190478515267;MEF2{A,B,C,D}:0.188332075834;HNF1A:0.166560781549;PRDM1:0.164413481033;XBP1:0.145195330732;NR5A1,2:0.140238349496;RFX2..5_RFXANK_RFXAP:0.1383102269;PAX4:0.136546425883;EVI1:0.128830814265;TBP:0.12854120779;HNF4A_NR2F1,2:0.122966132305;FOSL2:0.118845562949;LEF1_TCF7_TCF7L1,2:0.112117979378;HMX1:0.105280925608;FOX{I1,J2}:0.099739294912;MED-1{core}:0.0938258816669;POU6F1:0.0754500028036;FOXP3:0.0681682824637;RUNX1..3:0.0641962989779;TEF:0.0497510111018;GFI1:0.0484876573903;CDC5L:0.0473501899053;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0394059821572;HLF:0.0358172887736;BPTF:0.0278568385169;FOXN1:0.023654322561;PAX8:0.0120490484557;SP1:0.00937899582093;TGIF1:-0.0116255847945;MTF1:-0.0171435950791;HBP1_HMGB_SSRP1_UBTF:-0.020378149135;ATF2:-0.0374241251497;FOS_FOS{B,L1}_JUN{B,D}:-0.038718399913;TFAP2{A,C}:-0.0495058459726;STAT5{A,B}:-0.0502277327705;MTE{core}:-0.0518771701853;AR:-0.0526723526796;HOX{A4,D4}:-0.0769222733402;TP53:-0.0822132920296;HIC1:-0.106964708943;ZNF143:-0.122656037134;FOXA2:-0.123582402402;NKX3-2:-0.163621146854;ZNF148:-0.173852147021;FOX{D1,D2}:-0.175026741451;FOX{F1,F2,J1}:-0.181159876359;T:-0.195998613135;RXRA_VDR{dimer}:-0.220501759967;SOX2:-0.234112985544;EGR1..3:-0.236053996244;CRX:-0.239536688656;ADNP_IRX_SIX_ZHX:-0.24546463976;NKX2-1,4:-0.253617763052;REST:-0.258641951166;CEBPA,B_DDIT3:-0.260961313487;ELK1,4_GABP{A,B1}:-0.268279423463;ATF5_CREB3:-0.272046150152;POU3F1..4:-0.276892120382;NFE2L1:-0.279567329496;NFIL3:-0.281175376749;ATF4:-0.294490870057;JUN:-0.300577210376;CREB1:-0.320234577081;TOPORS:-0.330281823859;HIF1A:-0.353198099621;ZFP161:-0.370287992508;POU5F1:-0.379282746352;MYB:-0.384440644695;CUX2:-0.386059117861;NFKB1_REL_RELA:-0.395924069898;XCPE1{core}:-0.398077373935;RORA:-0.39914513735;CDX1,2,4:-0.423704108901;NRF1:-0.424486591803;LMO2:-0.431028930236;IRF1,2:-0.437588642862;bHLH_family:-0.443182057654;SNAI1..3:-0.450779046069;TFAP2B:-0.458970613917;POU2F1..3:-0.463185698997;PAX2:-0.488943866459;ETS1,2:-0.489282718975;PAX6:-0.501580981682;GCM1,2:-0.521104712445;IRF7:-0.526521375303;PAX3,7:-0.536284065286;FOXM1:-0.567448681237;NFY{A,B,C}:-0.569238685195;GATA6:-0.595492965201;PPARG:-0.605696185259;SPI1:-0.60908722918;SPIB:-0.609315546322;PBX1:-0.638809617409;EP300:-0.643595038488;ELF1,2,4:-0.660936916118;BREu{core}:-0.665318682213;ZEB1:-0.717313052032;NANOG:-0.721068860785;E2F1..5:-0.725451828292;SOX{8,9,10}:-0.732951003388;ZBTB16:-0.751277794935;POU1F1:-0.790026601058;VSX1,2:-0.81291369728;HOXA9_MEIS1:-0.876446875692;FOXP1:-0.888745341927;TFDP1:-0.988181981791;MYOD1:-1.03953556875;TLX2:-1.06085128149;ALX1:-1.10527909219;OCT4_SOX2{dimer}:-1.14957308231;PITX1..3:-1.473825371
|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|id=FF:11248-116E6
|is_a=EFO:0002091;;FF:0000002;;FF:0000192;;FF:0000210
|is_a=EFO:0002091;;FF:0000002;;FF:0000192;;FF:0000210
|name=Anulus Pulposus Cell, donor1
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=NCig10045,,,
|profile_hcage=CNhs10876,LSID703,release008,COMPLETED
|profile_rnaseq=,,,
|profile_srnaseq=SRhi10004,,,
|rna_box=116
|rna_catalog_number=SC4815
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=lot:5026
|rna_od260/230=
|rna_od260/280=
|rna_position=E6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=116E6
|rna_weight_ug=10
|sample_age=
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=anulus fibrosus cell of intervertebral disc
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_id=11248
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=spinal cord
|top_motifs=RXR{A,B,G}:2.08726327293;ZNF238:1.89133974462;GZF1:1.61000225261;HES1:1.46669967332;ATF6:1.44060604715;TAL1_TCF{3,4,12}:1.34114991198;ZNF423:1.2680145207;PDX1:1.24916770314;GLI1..3:1.19136591572;NFIX:1.19120118775;EBF1:1.18971454619;TFAP4:1.16321895193;ESR1:1.08234124767;FOXL1:1.0787746566;HOX{A5,B5}:1.06421945743;GFI1B:1.03948750177;NR1H4:1.02432729488;NR6A1:0.919196621437;MYBL2:0.885548515931;NR3C1:0.85782309293;TLX1..3_NFIC{dimer}:0.8555578635;PATZ1:0.854383907348;MAFB:0.837744061635;NFATC1..3:0.815498661661;EN1,2:0.805288043692;YY1:0.768640459648;SOX5:0.763346994221;ALX4:0.741169747036;NANOG{mouse}:0.736955713089;NKX6-1,2:0.719497890968;AIRE:0.714993463918;GTF2A1,2:0.709070602389;KLF4:0.704882135292;DMAP1_NCOR{1,2}_SMARC:0.682466670731;ZBTB6:0.679521880067;ZNF384:0.673280692017;PAX1,9:0.662884975526;MZF1:0.652749334763;TBX4,5:0.621964268957;UFEwm:0.618712106803;ZIC1..3:0.612784591973;TEAD1:0.598018283107;DBP:0.583783277681;PAX5:0.58335218244;GTF2I:0.568811487349;ARID5B:0.562084201562;STAT1,3:0.554546639126;NKX2-2,8:0.552129674273;NKX2-3_NKX2-5:0.541071606147;NHLH1,2:0.53238352031;FOXO1,3,4:0.519985475428;SRF:0.490008435926;SPZ1:0.473040990966;HAND1,2:0.45952079625;LHX3,4:0.438538537103;MYFfamily:0.424036615691;SMAD1..7,9:0.421762570239;TFCP2:0.41471563813;NFE2L2:0.40933998922;FOXD3:0.37655299583;RREB1:0.362246953113;AHR_ARNT_ARNT2:0.361706772584;IKZF1:0.346173361927;FOXQ1:0.339333924606;STAT2,4,6:0.33228887417;MAZ:0.318372587267;BACH2:0.295570486925;SOX17:0.29109940042;NKX3-1:0.273220332664;ESRRA:0.271342951486;HSF1,2:0.266574905709;RBPJ:0.252569034995;PRRX1,2:0.248769467428;ONECUT1,2:0.247820950327;NFE2:0.242746294721;HOX{A6,A7,B6,B7}:0.234397423454;RFX1:0.222746762475;HMGA1,2:0.221800536709;SREBF1,2:0.205977976345;GATA4:0.195597565733;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.190539239997;IKZF2:0.190478515267;MEF2{A,B,C,D}:0.188332075834;HNF1A:0.166560781549;PRDM1:0.164413481033;XBP1:0.145195330732;NR5A1,2:0.140238349496;RFX2..5_RFXANK_RFXAP:0.1383102269;PAX4:0.136546425883;EVI1:0.128830814265;TBP:0.12854120779;HNF4A_NR2F1,2:0.122966132305;FOSL2:0.118845562949;LEF1_TCF7_TCF7L1,2:0.112117979378;HMX1:0.105280925608;FOX{I1,J2}:0.099739294912;MED-1{core}:0.0938258816669;POU6F1:0.0754500028036;FOXP3:0.0681682824637;RUNX1..3:0.0641962989779;TEF:0.0497510111018;GFI1:0.0484876573903;CDC5L:0.0473501899053;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0394059821572;HLF:0.0358172887736;BPTF:0.0278568385169;FOXN1:0.023654322561;PAX8:0.0120490484557;SP1:0.00937899582093;TGIF1:-0.0116255847945;MTF1:-0.0171435950791;HBP1_HMGB_SSRP1_UBTF:-0.020378149135;ATF2:-0.0374241251497;FOS_FOS{B,L1}_JUN{B,D}:-0.038718399913;TFAP2{A,C}:-0.0495058459726;STAT5{A,B}:-0.0502277327705;MTE{core}:-0.0518771701853;AR:-0.0526723526796;HOX{A4,D4}:-0.0769222733402;TP53:-0.0822132920296;HIC1:-0.106964708943;ZNF143:-0.122656037134;FOXA2:-0.123582402402;NKX3-2:-0.163621146854;ZNF148:-0.173852147021;FOX{D1,D2}:-0.175026741451;FOX{F1,F2,J1}:-0.181159876359;T:-0.195998613135;RXRA_VDR{dimer}:-0.220501759967;SOX2:-0.234112985544;EGR1..3:-0.236053996244;CRX:-0.239536688656;ADNP_IRX_SIX_ZHX:-0.24546463976;NKX2-1,4:-0.253617763052;REST:-0.258641951166;CEBPA,B_DDIT3:-0.260961313487;ELK1,4_GABP{A,B1}:-0.268279423463;ATF5_CREB3:-0.272046150152;POU3F1..4:-0.276892120382;NFE2L1:-0.279567329496;NFIL3:-0.281175376749;ATF4:-0.294490870057;JUN:-0.300577210376;CREB1:-0.320234577081;TOPORS:-0.330281823859;HIF1A:-0.353198099621;ZFP161:-0.370287992508;POU5F1:-0.379282746352;MYB:-0.384440644695;CUX2:-0.386059117861;NFKB1_REL_RELA:-0.395924069898;XCPE1{core}:-0.398077373935;RORA:-0.39914513735;CDX1,2,4:-0.423704108901;NRF1:-0.424486591803;LMO2:-0.431028930236;IRF1,2:-0.437588642862;bHLH_family:-0.443182057654;SNAI1..3:-0.450779046069;TFAP2B:-0.458970613917;POU2F1..3:-0.463185698997;PAX2:-0.488943866459;ETS1,2:-0.489282718975;PAX6:-0.501580981682;GCM1,2:-0.521104712445;IRF7:-0.526521375303;PAX3,7:-0.536284065286;FOXM1:-0.567448681237;NFY{A,B,C}:-0.569238685195;GATA6:-0.595492965201;PPARG:-0.605696185259;SPI1:-0.60908722918;SPIB:-0.609315546322;PBX1:-0.638809617409;EP300:-0.643595038488;ELF1,2,4:-0.660936916118;BREu{core}:-0.665318682213;ZEB1:-0.717313052032;NANOG:-0.721068860785;E2F1..5:-0.725451828292;SOX{8,9,10}:-0.732951003388;ZBTB16:-0.751277794935;POU1F1:-0.790026601058;VSX1,2:-0.81291369728;HOXA9_MEIS1:-0.876446875692;FOXP1:-0.888745341927;TFDP1:-0.988181981791;MYOD1:-1.03953556875;TLX2:-1.06085128149;ALX1:-1.10527909219;OCT4_SOX2{dimer}:-1.14957308231;PITX1..3:-1.473825371
}}
}}

Revision as of 14:50, 21 March 2012


Name:Anulus Pulposus Cell, donor1
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuespinal cord
dev stageNA
sexunknown
ageNA
cell typeanulus fibrosus cell of intervertebral disc
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:5026
catalog numberSC4815
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]





Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
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C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10876

Jaspar motifP-value
MA0002.20.374
MA0003.10.319
MA0004.10.209
MA0006.10.258
MA0007.10.416
MA0009.10.645
MA0014.10.993
MA0017.10.505
MA0018.20.00138
MA0019.10.673
MA0024.13.09632e-6
MA0025.10.00586
MA0027.10.418
MA0028.10.103
MA0029.10.47
MA0030.10.697
MA0031.10.771
MA0035.20.038
MA0038.10.531
MA0039.20.387
MA0040.10.438
MA0041.10.341
MA0042.10.323
MA0043.10.0282
MA0046.10.614
MA0047.20.2
MA0048.10.985
MA0050.11.31254e-5
MA0051.10.0268
MA0052.10.783
MA0055.10.342
MA0057.10.978
MA0058.10.308
MA0059.10.209
MA0060.12.78188e-5
MA0061.10.906
MA0062.21.95684e-7
MA0065.20.247
MA0066.10.138
MA0067.10.0664
MA0068.10.183
MA0069.10.45
MA0070.10.973
MA0071.10.946
MA0072.10.633
MA0073.10.89
MA0074.10.126
MA0076.10.0123
MA0077.10.171
MA0078.10.749
MA0079.20.444
MA0080.21.74175e-8
MA0081.10.0148
MA0083.10.00218
MA0084.10.175
MA0087.10.283
MA0088.10.191
MA0090.10.0137
MA0091.10.00102
MA0092.10.276
MA0093.10.161
MA0099.20.00666
MA0100.10.556
MA0101.10.0104
MA0102.20.514
MA0103.10.0129
MA0104.20.151
MA0105.10.0737
MA0106.10.466
MA0107.10.00869
MA0108.20.76
MA0111.10.663
MA0112.20.00519
MA0113.10.049
MA0114.10.463
MA0115.10.153
MA0116.10.035
MA0117.10.634
MA0119.10.058
MA0122.10.994
MA0124.10.0401
MA0125.10.501
MA0131.10.308
MA0135.10.24
MA0136.18.63395e-11
MA0137.20.0389
MA0138.20.348
MA0139.10.222
MA0140.10.0271
MA0141.10.288
MA0142.10.383
MA0143.10.412
MA0144.10.0889
MA0145.10.277
MA0146.10.279
MA0147.10.101
MA0148.10.0336
MA0149.10.171
MA0150.10.957
MA0152.10.0285
MA0153.10.364
MA0154.10.0457
MA0155.10.197
MA0156.12.72231e-10
MA0157.10.479
MA0159.10.742
MA0160.10.252
MA0162.10.114
MA0163.10.00622
MA0164.10.919
MA0258.10.463
MA0259.10.152



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10876

Novel motifP-value
10.676
100.724
1000.691
1010.761
1020.166
1030.0613
1040.421
1050.429
1060.252
1070.0157
1080.784
1090.801
110.228
1100.405
1110.425
1120.685
1130.451
1140.471
1150.547
1160.124
1170.704
1180.798
1190.94
120.253
1200.434
1210.34
1220.246
1235.99451e-5
1240.611
1250.14
1260.512
1270.225
1280.0185
1290.874
130.617
1300.114
1310.534
1320.0942
1330.838
1340.315
1350.966
1360.678
1370.208
1380.518
1390.801
140.619
1400.17
1410.104
1420.579
1430.937
1440.26
1450.279
1460.184
1470.317
1480.661
1490.0609
150.701
1500.445
1510.612
1520.28
1530.748
1540.266
1550.111
1560.1
1570.728
1580.0103
1590.228
160.0621
1600.122
1610.877
1620.111
1630.932
1640.431
1650.847
1660.266
1670.159
1680.558
1690.0701
170.275
180.229
190.0226
20.167
200.654
210.352
220.0497
230.182
240.193
250.661
260.837
270.106
280.233
290.129
30.316
300.0777
310.333
323.35883e-8
330.219
340.497
350.678
360.224
370.0361
380.745
390.192
40.0055
400.383
410.0417
420.811
430.374
440.675
450.203
460.171
470.767
480.865
490.84
50.465
500.383
510.281
520.487
530.126
540.373
550.273
560.513
570.788
580.572
590.022
60.704
600.732
610.733
620.652
630.42
640.966
650.245
660.56
670.638
680.458
690.295
70.741
700.71
710.418
720.129
730.124
740.64
750.556
760.741
770.104
780.764
790.108
80.143
800.714
810.644
820.286
830.591
840.56
850.366
860.476
870.825
880.186
890.0588
90.0945
900.697
910.597
920.454
930.601
940.356
950.679
960.222
970.439
980.45
998.55568e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10876


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000255 (eukaryotic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0002602 (annulus pulposus cell)

UBERON: Anatomy
0000061 (anatomical structure)
0000062 (organ)
0000075 (subdivision of skeletal system)
0000465 (material anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000475 (organism subdivision)
0000477 (anatomical cluster)
0000479 (tissue)
0000480 (anatomical group)
0000481 (multi-tissue structure)
0000922 (embryo)
0000923 (germ layer)
0000926 (mesoderm)
0000982 (skeletal joint)
0001062 (anatomical entity)
0001066 (intervertebral disk)
0001130 (vertebral column)
0001137 (dorsum)
0001434 (skeletal system)
0001468 (intervertebral joint)
0001995 (fibrocartilage)
0002050 (embryonic structure)
0002100 (trunk)
0002204 (musculoskeletal system)
0002209 (fibrous joint)
0002213 (cartilaginous joint)
0002216 (symphysis)
0002329 (somite)
0002384 (connective tissue)
0002418 (cartilage tissue)
0002532 (epiblast (generic))
0003059 (presomitic mesoderm)
0003077 (paraxial mesoderm)
0003089 (sclerotome)
0003104 (mesenchyme)
0003586 (trunk connective tissue)
0004120 (mesoderm-derived structure)
0004288 (skeleton)
0004715 (annulus fibrosus disci intervertebralis)
0004755 (skeletal tissue)
0004765 (skeletal element)
0004770 (articular system)
0004905 (articulation)
0005174 (dorsal region element)
0005177 (trunk region element)
0005291 (embryonic tissue)
0005423 (developing anatomical structure)
0006444 (annulus fibrosus)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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