FF:11929-125I3

Name:	Mallassez-derived cells, donor2
Species:
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}

Additional information

Sample information strain NA tissue ANATOMICAL SYSTEM dev stage NA sex female age 29 cell type epithelial cell rests of Malassez cell line NA company NA collaboration Mitsuhiro Ohshima (Nihon University School of Dentistry) External link for information [{{{sample_info_link}}} {{{sample_info_link}}}] RNA information lot number MZe6 catalog number NA sample type total RNA extraction protocol (Details) OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Relative expression to median (log10)

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Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

FANTOM5 (FF) ontology

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Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000087 human Malassez derived epithelial cell sample
FF:0000210 human sample

Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000066 (epithelial cell)
0000221 (ectodermal cell)
0000255 (eukaryotic cell)
0000548 (animal cell)
0002077 (ecto-epithelial cell)
0002159 (general ecto-epithelial cell)
0002166 (epithelial cell of Malassez)
0002321 (embryonic cell)
0002371 (somatic cell)

UBERON: Anatomy
0000033 (head)
0000061 (anatomical structure)
0000062 (organ)
0000075 (subdivision of skeletal system)
0000153 (anterior region of body)
0000465 (material anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000475 (organism subdivision)
0000479 (tissue)
0000480 (anatomical group)
0000481 (multi-tissue structure)
0000922 (embryo)
0000923 (germ layer)
0000924 (ectoderm)
0000926 (mesoderm)
0001062 (anatomical entity)
0001434 (skeletal system)
0001708 (jaw skeleton)
0002050 (embryonic structure)
0002204 (musculoskeletal system)
0002329 (somite)
0002342 (neural crest)
0002346 (neurectoderm)
0002532 (epiblast (generic))
0002539 (pharyngeal arch)
0003059 (presomitic mesoderm)
0003075 (neural plate)
0003077 (paraxial mesoderm)
0003089 (sclerotome)
0003104 (mesenchyme)
0003129 (skull)
0004120 (mesoderm-derived structure)
0004121 (ectoderm-derived structure)
0004288 (skeleton)
0004765 (skeletal element)
0005291 (embryonic tissue)
0005423 (developing anatomical structure)
0006598 (presumptive structure)
0007284 (presumptive neural plate)
0008814 (pharyngeal arch system)
0008816 (embryonic head)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA