FFCP PHASE1:Hg19::chr16:66413204..66413234,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1003 | |EntrezGene=1003 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1764 | |HGNC=1764 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc002eon.1_5end | |association_with_transcript=0bp_to_uc002eon.1_5end | ||
|cluster_id=chr16:66413204..66413234,+ | |||
|coexpression_cluster_id=C83 | |||
|description=CAGE_peak_5_at_CDH5_5end | |description=CAGE_peak_5_at_CDH5_5end | ||
|id=chr16:66413204..66413234,+ | |id=chr16:66413204..66413234,+ | ||
|ontology_enrichment_celltype=CL:0000039!4.12e-20!7;CL:0000586!4.12e-20!7;CL:0002139!8.39e-19!24;CL:0000066!3.12e-16!254;CL:0000115!1.15e-13!35;CL:0002078!9.40e-12!44;CL:0005020!1.34e-11!6;CL:0002138!1.34e-11!6;CL:0005022!1.34e-11!6;CL:0000071!2.40e-10!18;CL:0002546!2.40e-10!18;CL:0000213!3.23e-08!57;CL:0000215!3.23e-08!57;CL:0000076!4.36e-07!62 | |ontology_enrichment_celltype=CL:0000039!4.12e-20!7;CL:0000586!4.12e-20!7;CL:0002139!8.39e-19!24;CL:0000066!3.12e-16!254;CL:0000115!1.15e-13!35;CL:0002078!9.40e-12!44;CL:0005020!1.34e-11!6;CL:0002138!1.34e-11!6;CL:0005022!1.34e-11!6;CL:0000071!2.40e-10!18;CL:0002546!2.40e-10!18;CL:0000213!3.23e-08!57;CL:0000215!3.23e-08!57;CL:0000076!4.36e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.59e-21;7!CL:0000586;1.59e-21;7!CL:0000083;3.70e-10;4!CL:0002138;7.30e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.33e-21,7;CL:0000586,1.33e-21,7;CL:0000083,3.62e-10,4;CL:0005020,9.81e-07,6;CL:0002138,9.81e-07,6;CL:0005022,9.81e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.60e-24;29!UBERON:0003124;9.83e-11;1!CL:0005022;7.30e-07;6 | |||
|ontology_enrichment_disease=DOID:305!2.61e-14!106;DOID:0050687!1.60e-13!143 | |||
|ontology_enrichment_disease_v019=DOID:1799;7.40e-11;1!DOID:10165;7.40e-11;1!DOID:1798;7.40e-11;1!DOID:1793;3.70e-10;4!DOID:170;4.73e-07;6!DOID:3095;5.73e-07;22!DOID:2994;5.73e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.29e-15,143;DOID:305,2.34e-14,106;DOID:1799,7.40e-11,1;DOID:10165,7.40e-11,1;DOID:1798,7.40e-11,1;DOID:1793,3.62e-10,4;DOID:162,2.42e-08,235;DOID:14566,4.15e-08,239;DOID:170,4.66e-07,6;DOID:3095,5.43e-07,22;DOID:2994,5.43e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0001737!8.55e-26!9;UBERON:0001557!8.04e-14!19;UBERON:0001986!2.40e-10!18;UBERON:0004638!2.40e-10!18;UBERON:0004852!2.40e-10!18;UBERON:0001473!1.35e-08!8;UBERON:0004536!1.35e-08!8;UBERON:0006558!1.35e-08!8;UBERON:0008947!2.87e-08!38;UBERON:0003258!2.87e-08!38;UBERON:0000487!3.71e-08!22;UBERON:0006914!5.56e-07!25;UBERON:0002465!8.56e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;8.92e-63;9!UBERON:0001557;8.92e-63;9!UBERON:0000072;3.08e-17;37!UBERON:0000065;5.02e-15;44!UBERON:0001004;3.16e-08;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.98e-63,9;UBERON:0001557,4.11e-37,19;UBERON:0008947,5.08e-18,38;UBERON:0003258,5.08e-18,38;UBERON:0000072,1.13e-17,47;UBERON:0000065,3.41e-15,54;UBERON:0001004,1.10e-10,74;UBERON:0001041,7.25e-09,87 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0.56530794192401,0.419499436209906,0,0.835979866147242,0.258416759169329,1.06729878806013,0.66944122552934,0.402829317109147,0,0.24406205754817,0,0,0.17859945656816,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0.121973706129595,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0.709840800239063,1.51726221070292,1.68707720918437,2.64705534557745,1.52515610864684,1.89816495288877,1.75280700608214,2.35465758150415,2.30848294167834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01056513432752,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0.764628819135115,0,0,0,0,0,0,0,3.60643540767028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44773882019626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,1.65471377237555,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,15.447781594,69.0236285511148,13.472274118329,0,0.274792780205587,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,1.56531695145672,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0,0.293977192243133,0.0870592065804026,0,0,0,0.146178634172371,0,0,0,0,0,0,0,0.391102765469606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0.13223260174269,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.926404341482917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,1.27078232765372,0,0,0,0,0,0,36.4050305329177,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,7.80580857431222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,1.3746412112643,0,0,0.111855431797792,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0.71421575442263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61193297845189,0.801652215796681,1.74600309116205,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0.56530794192401,0.419499436209906,0,0.835979866147242,0.258416759169329,1.06729878806013,0.66944122552934,0.402829317109147,0,0.24406205754817,0,0,0.17859945656816,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0.121973706129595,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0.709840800239063,1.51726221070292,1.68707720918437,2.64705534557745,1.52515610864684,1.89816495288877,1.75280700608214,2.35465758150415,2.30848294167834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01056513432752,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0.764628819135115,0,0,0,0,0,0,0,3.60643540767028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44773882019626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,1.65471377237555,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,15.447781594,69.0236285511148,13.472274118329,0,0.274792780205587,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,1.56531695145672,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0,0.293977192243133,0.0870592065804026,0,0,0,0.146178634172371,0,0,0,0,0,0,0,0.391102765469606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0.13223260174269,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.926404341482917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,1.27078232765372,0,0,0,0,0,0,36.4050305329177,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,7.80580857431222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,1.3746412112643,0,0,0.111855431797792,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0.71421575442263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61193297845189,0.801652215796681,1.74600309116205,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p5@CDH5 | |short_description=p5@CDH5 | ||
}} | }} |
Latest revision as of 08:12, 17 September 2015
Short description: | p5@CDH5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CDH5_5end |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | 0bp_to_uc002eon.1_5end |
EntrezGene: | CDH5 |
HGNC: | 1764 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.33e-21 | 7 |
germ cell | 1.33e-21 | 7 |
epithelial cell of pancreas | 3.62e-10 | 4 |
lymphangioblast | 9.81e-07 | 6 |
endothelial cell of lymphatic vessel | 9.81e-07 | 6 |
vascular lymphangioblast | 9.81e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.98e-63 | 9 |
upper respiratory tract | 4.11e-37 | 19 |
respiratory primordium | 5.08e-18 | 38 |
endoderm of foregut | 5.08e-18 | 38 |
segment of respiratory tract | 1.13e-17 | 47 |
respiratory tract | 3.41e-15 | 54 |
respiratory system | 1.10e-10 | 74 |
foregut | 7.25e-09 | 87 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.29e-15 | 143 |
carcinoma | 2.34e-14 | 106 |
islet cell tumor | 7.40e-11 | 1 |
endocrine pancreas cancer | 7.40e-11 | 1 |
pancreatic endocrine carcinoma | 7.40e-11 | 1 |
pancreatic cancer | 3.62e-10 | 4 |
cancer | 2.42e-08 | 235 |
disease of cellular proliferation | 4.15e-08 | 239 |
endocrine gland cancer | 4.66e-07 | 6 |
germ cell and embryonal cancer | 5.43e-07 | 22 |
germ cell cancer | 5.43e-07 | 22 |