FFCP PHASE1:Hg19::chr10:3827389..3827408,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:3827389..3827408,-
|short_description=p1@KLF6
|description=CAGE_peak_1_at_KLF6_5end
|association_with_transcript=0bp_to_ENST00000322510_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1316 | |EntrezGene=1316 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2235 | |HGNC=2235 | ||
|TSSclassifier=strong | |||
|UniProt=E7ETR4 | |UniProt=E7ETR4 | ||
|association_with_transcript=0bp_to_ENST00000322510_5end | |||
|cluster_id=chr10:3827389..3827408,- | |||
|description=CAGE_peak_1_at_KLF6_5end | |||
|id=chr10:3827389..3827408,- | |||
|ontology_enrichment_celltype=CL:0002057!2.63e-23!42;CL:0000766!2.27e-21!76;CL:0000738!1.34e-20!140;CL:0000860!8.19e-19!45;CL:0000557!1.31e-18!71;CL:0002009!6.52e-17!65;CL:0002194!6.66e-16!63;CL:0000576!6.66e-16!63;CL:0000040!6.66e-16!63;CL:0000559!6.66e-16!63;CL:0000839!2.85e-15!70;CL:0002031!7.02e-14!124;CL:0002087!9.63e-14!119;CL:0002371!1.30e-10!591;CL:0000037!1.48e-07!172;CL:0000566!1.48e-07!172;CL:0000791!2.80e-07!18;CL:0000789!2.80e-07!18;CL:0002420!2.80e-07!18;CL:0002419!2.80e-07!18;CL:0000790!2.80e-07!18;CL:0000988!7.63e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.17e-16;33!CL:0002057;1.17e-16;33!CL:0000473;7.03e-15;39!CL:0000234;7.03e-15;39!CL:0000576;2.76e-12;48!CL:0000766;3.50e-12;69!CL:0000791;2.78e-07;18!CL:0000789;2.78e-07;18!CL:0002419;2.78e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.98e-25,72;CL:0000473,2.85e-24,48;CL:0000234,2.85e-24,48;CL:0000860,2.63e-23,42;CL:0002057,2.63e-23,42;CL:0000738,5.16e-23,136;CL:0000557,4.19e-22,67;CL:0002009,2.16e-20,61;CL:0002194,2.59e-19,59;CL:0000576,2.59e-19,59;CL:0000040,2.59e-19,59;CL:0000559,2.59e-19,59;CL:0000839,2.32e-18,66;CL:0002031,6.68e-16,120;CL:0002087,8.42e-16,115;CL:0000037,1.05e-08,168;CL:0000988,8.49e-08,177;CL:0002032,1.32e-07,161;CL:0000837,1.32e-07,161;CL:0000763,1.36e-07,108;CL:0000049,1.36e-07,108;CL:0000134,2.01e-07,354;CL:0000791,2.80e-07,18;CL:0000789,2.80e-07,18;CL:0002420,2.80e-07,18;CL:0002419,2.80e-07,18;CL:0000790,2.80e-07,18;CL:0002320,4.92e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;7.26e-17;42!CL:0000790;2.78e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.18e-21!112;UBERON:0002390!2.67e-20!102;UBERON:0003061!2.67e-20!102;UBERON:0002371!5.00e-19!80;UBERON:0003081!1.45e-17!216;UBERON:0001474!4.78e-17!86;UBERON:0002405!1.06e-16!115;UBERON:0004765!2.09e-16!101;UBERON:0001434!2.09e-16!101;UBERON:0002204!2.57e-09!167;UBERON:0000926!3.43e-08!448;UBERON:0004120!3.43e-08!448;UBERON:0006603!3.43e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.17e-24,108;UBERON:0002390,3.28e-23,98;UBERON:0003061,3.28e-23,98;UBERON:0002371,2.68e-22,76;UBERON:0002405,1.36e-21,93;UBERON:0001474,6.02e-20,82;UBERON:0004765,8.64e-20,90;UBERON:0001434,3.45e-18,100;UBERON:0003081,2.64e-17,203;UBERON:0000926,1.75e-10,315;UBERON:0004120,1.75e-10,315;UBERON:0006603,1.75e-10,315;UBERON:0002204,1.78e-10,167;UBERON:0002384,4.17e-07,371 | |||
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| ||
|short_description=p1@KLF6 | |||
}} | }} |
Latest revision as of 03:25, 18 September 2015
Short description: | p1@KLF6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KLF6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000322510_5end |
EntrezGene: | KLF6 |
HGNC: | 2235 |
UniProt: | E7ETR4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.98e-25 | 72 |
defensive cell | 2.85e-24 | 48 |
phagocyte | 2.85e-24 | 48 |
classical monocyte | 2.63e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.63e-23 | 42 |
leukocyte | 5.16e-23 | 136 |
granulocyte monocyte progenitor cell | 4.19e-22 | 67 |
macrophage dendritic cell progenitor | 2.16e-20 | 61 |
monopoietic cell | 2.59e-19 | 59 |
monocyte | 2.59e-19 | 59 |
monoblast | 2.59e-19 | 59 |
promonocyte | 2.59e-19 | 59 |
myeloid lineage restricted progenitor cell | 2.32e-18 | 66 |
hematopoietic lineage restricted progenitor cell | 6.68e-16 | 120 |
nongranular leukocyte | 8.42e-16 | 115 |
hematopoietic stem cell | 1.05e-08 | 168 |
hematopoietic cell | 8.49e-08 | 177 |
hematopoietic oligopotent progenitor cell | 1.32e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.32e-07 | 161 |
myeloid cell | 1.36e-07 | 108 |
common myeloid progenitor | 1.36e-07 | 108 |
mesenchymal cell | 2.01e-07 | 354 |
mature alpha-beta T cell | 2.80e-07 | 18 |
alpha-beta T cell | 2.80e-07 | 18 |
immature T cell | 2.80e-07 | 18 |
mature T cell | 2.80e-07 | 18 |
immature alpha-beta T cell | 2.80e-07 | 18 |
connective tissue cell | 4.92e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.17e-24 | 108 |
hematopoietic system | 3.28e-23 | 98 |
blood island | 3.28e-23 | 98 |
bone marrow | 2.68e-22 | 76 |
immune system | 1.36e-21 | 93 |
bone element | 6.02e-20 | 82 |
skeletal element | 8.64e-20 | 90 |
skeletal system | 3.45e-18 | 100 |
lateral plate mesoderm | 2.64e-17 | 203 |
mesoderm | 1.75e-10 | 315 |
mesoderm-derived structure | 1.75e-10 | 315 |
presumptive mesoderm | 1.75e-10 | 315 |
musculoskeletal system | 1.78e-10 | 167 |
connective tissue | 4.17e-07 | 371 |