FFCP PHASE1:Hg19::chr12:129308303..129308317,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=121260 | |EntrezGene=121260 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23090 | |HGNC=23090 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-165bp_to_ENST00000539703_5end | |association_with_transcript=-165bp_to_ENST00000539703_5end | ||
|cluster_id=chr12:129308303..129308317,- | |||
|coexpression_cluster_id=C44 | |||
|description=CAGE_peak_3_at_SLC15A4_5end | |description=CAGE_peak_3_at_SLC15A4_5end | ||
|id=chr12:129308303..129308317,- | |id=chr12:129308303..129308317,- | ||
|ontology_enrichment_celltype=CL:0000738!1.02e-16!140;CL:0002087!2.58e-12!119;CL:0000988!6.30e-12!182;CL:0000037!9.97e-12!172;CL:0000566!9.97e-12!172;CL:0002032!2.19e-10!165;CL:0000837!2.19e-10!165;CL:0000766!3.40e-10!76;CL:0002057!6.66e-10!42;CL:0002031!2.44e-09!124;CL:0000860!1.06e-08!45;CL:0002320!2.51e-08!365;CL:0000134!3.19e-08!358;CL:0000034!3.99e-08!444;CL:0002009!6.37e-08!65;CL:0002194!7.18e-08!63;CL:0000576!7.18e-08!63;CL:0000040!7.18e-08!63;CL:0000559!7.18e-08!63;CL:0000048!1.08e-07!430;CL:0000094!1.13e-07!8;CL:0000723!1.73e-07!436;CL:0000219!6.78e-07!390;CL:0000763!8.72e-07!112;CL:0000049!8.72e-07!112 | |ontology_enrichment_celltype=CL:0000738!1.02e-16!140;CL:0002087!2.58e-12!119;CL:0000988!6.30e-12!182;CL:0000037!9.97e-12!172;CL:0000566!9.97e-12!172;CL:0002032!2.19e-10!165;CL:0000837!2.19e-10!165;CL:0000766!3.40e-10!76;CL:0002057!6.66e-10!42;CL:0002031!2.44e-09!124;CL:0000860!1.06e-08!45;CL:0002320!2.51e-08!365;CL:0000134!3.19e-08!358;CL:0000034!3.99e-08!444;CL:0002009!6.37e-08!65;CL:0002194!7.18e-08!63;CL:0000576!7.18e-08!63;CL:0000040!7.18e-08!63;CL:0000559!7.18e-08!63;CL:0000048!1.08e-07!430;CL:0000094!1.13e-07!8;CL:0000723!1.73e-07!436;CL:0000219!6.78e-07!390;CL:0000763!8.72e-07!112;CL:0000049!8.72e-07!112 | ||
|ontology_enrichment_celltype_v019=CL:0000094;1.50e-29;8!CL:0000081;4.36e-21;11!CL:0000784;1.36e-12;3!CL:0000623;2.62e-12;3!CL:0000775;2.82e-12;3!CL:0000767;4.72e-12;3!CL:0000771;1.09e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,1.35e-29,8;CL:0000081,4.04e-21,11;CL:0000738,1.61e-20,136;CL:0000037,2.85e-16,168;CL:0000988,5.00e-15,177;CL:0000784,1.37e-12,3;CL:0002032,1.75e-12,161;CL:0000837,1.75e-12,161;CL:0000775,2.59e-12,3;CL:0000623,2.79e-12,3;CL:0000825,2.79e-12,3;CL:0000767,4.84e-12,3;CL:0000766,1.08e-11,72;CL:0002087,2.85e-09,115;CL:0000771,1.03e-08,2;CL:0000763,2.73e-08,108;CL:0000049,2.73e-08,108;CL:0002031,1.01e-07,120;CL:0000134,2.80e-07,354;CL:0002320,5.79e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.15e-11!102;UBERON:0003061!3.15e-11!102;UBERON:0002193!2.23e-10!112;UBERON:0002384!5.58e-08!375;UBERON:0000178!5.73e-07!15;UBERON:0000179!5.73e-07!15;UBERON:0000463!5.73e-07!15 | |ontology_enrichment_uberon=UBERON:0002390!3.15e-11!102;UBERON:0003061!3.15e-11!102;UBERON:0002193!2.23e-10!112;UBERON:0002384!5.58e-08!375;UBERON:0000178!5.73e-07!15;UBERON:0000179!5.73e-07!15;UBERON:0000463!5.73e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.46e-10;15!UBERON:0000179;1.46e-10;15!UBERON:0000463;1.46e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.33e-10,15;UBERON:0000179,1.33e-10,15;UBERON:0000463,1.33e-10,15;UBERON:0002390,4.59e-08,98;UBERON:0003061,4.59e-08,98;UBERON:0002384,4.23e-07,371;UBERON:0002193,6.05e-07,108 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,0,0.446961094427288,0,0,0,0,0.245733936501509,0,0.218441372130172,0,0.247532705920093,0,0.672325146451775,0,0,0.487932798790507,0.123121058076788,0,0.313454721478088,0.286235987131057,0,0,0.534893840235659,0.410502947249729,0.708397031823113,4.72037132218685,3.0706351847777,4.02521920621798,0,0,0,0.387336002901508,0.142169232487422,0,0,1.20326668482085,3.03815219002193,0.223915474239924,0,0,1.45398238779565,1.88937971844405,1.4555043671269,0,0.411167888021826,0.619412741790207,0,0.256160706529101,0.945928919554341,0.689491361473237,0.645484683583826,0,0.376484679085209,0.818718450173537,0.224723484445085,0.918251677112708,0.320929027076094,1.91801137739712,0.329851300186716,0.398927315243264,2.13112375266347,0.580418477257168,0,1.24564449799115,0.251248665256743,0,0.65156653411535,0,0.736555271975129,0.316462387440884,0.845021145247767,0.212604299965044,0.419317291016752,0.336985893439485,0.750884464207532,0.32145117339416,0.285012743741249,0.19891667719909,0.547992461293902,1.75996244461323,0,0,0.426730222566507,0,0,0.661044872784862,0,1.70763890732835,1.76171156811282,0.764546456250458,1.32171328579026,1.12101712596307,0.526768169550154,0.590129310341499,0,0,0,0,0,0,0,0.294605907474837,0,0,0.128091319725675,0,0,0,0,0.14828656316206,0,0,0.113309342697566,0.383220493601921,0.34362744548263,0,0.318565414324097,0,0,0.150575119077773,0.127986611154418,0,0,0,2.01606743224732,4.54648332831962,1.30341963494519,0,0,0.639312809217652,0,1.00267582127178,0.144846518960824,0.795285947051099,0,0.378139268656271,0,0.087834785693126,0.196468613246569,0,0,0.97364218096405,0.174129737299267,0.132957960518865,45.7901998666257,31.459720092907,56.8329977034234,0,0,0,0,0.838998872419812,0.275118041940067,0,0.258416759169329,0.35576626268671,0.33472061276467,0.402829317109147,0,0,0.367663080345869,0,0.17859945656816,0,0,0,0,0.183201743930407,10.5424333948851,3.87780264148325,0,0.496971951695318,0.25326102332916,0.926864265692532,0.573673241497627,0,0,1.06748995729705,0.49333509683432,0,0.134710672069688,0.163461903113459,0.454072282934794,0,0,0,0,0.149448680551801,0.117434498643765,0.161872944368132,0.140450806702248,0.204154171254893,0,0.103325781175765,0,0.247266929278557,0,0,0.336672227908132,0.125118519871964,0,0,0,0.150238058906597,0.226864366320042,0.538168907066586,0.213557388818567,0.211931901159562,0,0.103052529238439,0.257640540045629,0.18611685633159,0.337552664482532,0.389748020644795,0.252433774244115,0.184099797284599,0,0.710019185033229,0,0.339121184620975,0.386521706326594,0,0,0.121973706129595,0.132529768321485,0,0,0.252320850875628,0,0,0,0,0,0.721879481669586,0,0.168584690078102,0.241011029883482,0.110293972732394,0,0,0,0,0.769494313892781,0,0,0.4115740113314,0,0,0,0,0,0,0.857839051492628,0.439001141634502,0,0.100528972411631,0.0925884451585296,0,0,0,1.39116485970092,0.352226082707465,0.144366447761074,0,0,0,0,0.246217006087397,0.234004265139238,0.445893486866185,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0.444485260045183,0,0,0,0.514137463516618,0.901029173531752,0.285826432630578,0.112131084345361,0,0,0,0,0,0.26593811658487,0,0.257207374262142,0,0,0.285955987316295,0,0,0.65147236858747,0,0,0,0.871533458600294,0.199945982364114,0,1.00451418286425,0,0,0,0,0.723906533337896,0.821905290201534,0.895304816199478,0.336255431980582,4.13764596424047,6.90008239550455,9.62572772098113,0,0,0,0,1.91381625495949,5.24304916763028,8.97484377612075,4.97298616123243,0.24538298343828,0,0,0.207970861530807,0.178428988797162,0,0,0.300946099727719,2.27407504055985,0,0,0.184369168541703,0.260650843404249,0.391602314925481,0.343143423810856,0.620304078368662,1.2942852049117,1.38745825144478,0.303127571446259,0,0.30239029332968,0.744323423456331,0.306923946576125,0.561320188866147,0.384417447767103,1.02341449813341,0,0,0,0.355123450626254,0.0821271560138091,0.519254429183621,0.232420756919918,0.120859449591622,0,0,0.114814448164607,0.182091168006717,0,0,0.385076685522074,0,0,0,0,0,0.215915916102139,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.103041011647722,0.183138929636687,0.247528499761764,0,0,0,0,0,0,0,0.214840489736547,0,0.0852266274161009,0.178064071293475,0.165284915360978,0,0,0,0,1.25924938732256,0.6970372701606,0,0,0.869932992075073,0.55597265731176,0.286249773483982,0,0.632758849437452,0.190630193923825,0,0,0.636406495851874,0.78494864019923,0.179872457583315,0.274537029736055,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0.282810863907425,0,0,0,0.438450885253763,0,0,0,0.30982349809975,0,0.286822704408103,0.294747123039363,0,0,0.422215270595328,0,0.379473173765715,0,0.192444225451024,0,0,0,0.43050537267123,0,0,0,3.04468565539302,1.52927441428475,1.13929437434833,0.238231775457789,0,0.648473311192717,0.540031437238115,2.37937552888281,0.106824071127473,0,0.735120647943095,0.185803175125719,0.432807638929335,0,0,0,0.191505370132367,0.211673582723883,0,0.280797178113459,0.228234679033192,0,0,0,0.321176150207399,0.403599414382095,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0.37428108081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| ||
|short_description=p3@SLC15A4 | |short_description=p3@SLC15A4 | ||
}} | }} |
Latest revision as of 07:42, 17 September 2015
Short description: | p3@SLC15A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC15A4_5end |
Coexpression cluster: | C44_Dendritic_CD19_CD133_granulocyte_acute_thymus_immature |
Association with transcript: | -165bp_to_ENST00000539703_5end |
EntrezGene: | SLC15A4 |
HGNC: | 23090 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 1.35e-29 | 8 |
blood cell | 4.04e-21 | 11 |
leukocyte | 1.61e-20 | 136 |
hematopoietic stem cell | 2.85e-16 | 168 |
hematopoietic cell | 5.00e-15 | 177 |
plasmacytoid dendritic cell | 1.37e-12 | 3 |
hematopoietic oligopotent progenitor cell | 1.75e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.75e-12 | 161 |
neutrophil | 2.59e-12 | 3 |
natural killer cell | 2.79e-12 | 3 |
pro-NK cell | 2.79e-12 | 3 |
basophil | 4.84e-12 | 3 |
myeloid leukocyte | 1.08e-11 | 72 |
nongranular leukocyte | 2.85e-09 | 115 |
eosinophil | 1.03e-08 | 2 |
myeloid cell | 2.73e-08 | 108 |
common myeloid progenitor | 2.73e-08 | 108 |
hematopoietic lineage restricted progenitor cell | 1.01e-07 | 120 |
mesenchymal cell | 2.80e-07 | 354 |
connective tissue cell | 5.79e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
blood | 1.33e-10 | 15 |
haemolymphatic fluid | 1.33e-10 | 15 |
organism substance | 1.33e-10 | 15 |
hematopoietic system | 4.59e-08 | 98 |
blood island | 4.59e-08 | 98 |
connective tissue | 4.23e-07 | 371 |
hemolymphoid system | 6.05e-07 | 108 |