FFCP PHASE1:Hg19::chr10:81967174..81967212,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:81967174..81967212,+
|short_description=p1@LOC439990
|description=CAGE_peak_1_at_LOC439990_5end
|association_with_transcript=-253bp_to_ENST00000422847,NR_...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=439990 | |EntrezGene=439990 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-253bp_to_ENST00000422847,NR_038464,uc001kbv.2_5end | |||
|cluster_id=chr10:81967174..81967212,+ | |||
|description=CAGE_peak_1_at_LOC439990_5end | |||
|id=chr10:81967174..81967212,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.14e-18!254;CL:0000055!5.16e-13!180;CL:0000220!5.11e-11!246;CL:0002321!1.53e-10!248;CL:0000222!2.06e-10!119;CL:0000548!6.63e-10!679;CL:0000004!6.63e-10!679;CL:0000255!6.63e-10!679;CL:0000012!2.44e-09!682;CL:0000187!4.41e-09!54;CL:0000680!4.76e-09!57;CL:0000056!4.76e-09!57;CL:0000355!4.76e-09!57;CL:0000183!6.46e-09!59;CL:0000192!1.23e-08!42;CL:0000514!1.23e-08!42;CL:0000077!2.14e-08!19;CL:0000057!1.45e-07!75;CL:0000076!2.50e-07!62;CL:0000393!3.92e-07!60;CL:0000211!3.92e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000077;2.57e-09;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.71e-15,253;CL:0000077,3.59e-09,19;CL:0000192,4.17e-08,43;CL:0000514,4.17e-08,43;CL:0000187,6.03e-07,55;CL:0000076,7.33e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!8.92e-16!106;DOID:0050687!3.99e-11!143;DOID:1749!2.20e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.15e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.52e-19,106;DOID:0050687,1.13e-14,143;DOID:1749,1.34e-10,14;DOID:14566,4.64e-09,239;DOID:162,8.45e-09,235 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.10e-20!238;UBERON:0009142!1.10e-20!238;UBERON:0000481!5.21e-20!347;UBERON:0002100!2.93e-18!216;UBERON:0004119!9.47e-17!169;UBERON:0000925!9.47e-17!169;UBERON:0006595!9.47e-17!169;UBERON:0001007!3.86e-16!155;UBERON:0001555!3.86e-16!155;UBERON:0007026!3.86e-16!155;UBERON:0005256!5.33e-16!143;UBERON:0000490!5.89e-14!138;UBERON:0000077!1.61e-11!130;UBERON:0004921!3.81e-11!129;UBERON:0004185!3.81e-11!129;UBERON:0003914!3.78e-10!118;UBERON:0000475!4.87e-10!365;UBERON:0000926!1.41e-09!448;UBERON:0004120!1.41e-09!448;UBERON:0006603!1.41e-09!448;UBERON:0005911!1.83e-09!82;UBERON:0001048!3.03e-09!168;UBERON:0000119!3.05e-09!312;UBERON:0000483!9.15e-09!309;UBERON:0005177!1.12e-08!107;UBERON:0000466!1.78e-08!126;UBERON:0002385!4.35e-08!63;UBERON:0001015!4.35e-08!63;UBERON:0000383!4.35e-08!63;UBERON:0000914!6.17e-08!83;UBERON:0002329!6.17e-08!83;UBERON:0003077!6.17e-08!83;UBERON:0003059!6.17e-08!83;UBERON:0007282!6.17e-08!83;UBERON:0009618!6.17e-08!83;UBERON:0007285!6.17e-08!83;UBERON:0000486!8.67e-08!82;UBERON:0001134!9.48e-08!61;UBERON:0002036!9.48e-08!61;UBERON:0003082!9.48e-08!61;UBERON:0003929!1.50e-07!54;UBERON:0000477!1.90e-07!286;UBERON:0004290!2.66e-07!70;UBERON:0004923!4.13e-07!57;UBERON:0000064!4.19e-07!219;UBERON:0000464!6.97e-07!104;UBERON:0003064!7.33e-07!37 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.26e-10,199;UBERON:0004119,7.17e-10,160;UBERON:0000925,7.17e-10,160;UBERON:0006595,7.17e-10,160;UBERON:0001007,1.43e-09,145;UBERON:0001555,1.43e-09,145;UBERON:0007026,1.43e-09,145;UBERON:0003104,1.07e-08,160;UBERON:0009142,1.07e-08,160;UBERON:0005256,7.38e-08,122;UBERON:0005911,9.03e-08,82;UBERON:0000490,1.20e-07,148 | |||
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| ||
|short_description=p1@LOC439990 | |||
}} | }} |
Latest revision as of 15:05, 19 September 2015
Short description: | p1@LOC439990 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC439990_5end |
Coexpression cluster: | NA |
Association with transcript: | -253bp_to_ENST00000422847, NR_038464, uc001kbv.2_5end |
EntrezGene: | LOC439990 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.71e-15 | 253 |
mesothelial cell | 3.59e-09 | 19 |
smooth muscle cell | 4.17e-08 | 43 |
smooth muscle myoblast | 4.17e-08 | 43 |
muscle cell | 6.03e-07 | 55 |
squamous epithelial cell | 7.33e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.26e-10 | 199 |
endoderm-derived structure | 7.17e-10 | 160 |
endoderm | 7.17e-10 | 160 |
presumptive endoderm | 7.17e-10 | 160 |
digestive system | 1.43e-09 | 145 |
digestive tract | 1.43e-09 | 145 |
primitive gut | 1.43e-09 | 145 |
mesenchyme | 1.07e-08 | 160 |
entire embryonic mesenchyme | 1.07e-08 | 160 |
trunk mesenchyme | 7.38e-08 | 122 |
endo-epithelium | 9.03e-08 | 82 |
unilaminar epithelium | 1.20e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.52e-19 | 106 |
cell type cancer | 1.13e-14 | 143 |
squamous cell carcinoma | 1.34e-10 | 14 |
disease of cellular proliferation | 4.64e-09 | 239 |
cancer | 8.45e-09 | 235 |