FFCP PHASE1:Hg19::chr17:48265923..48266006,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-8bp_to_ENST00000486572_5end | |association_with_transcript=-8bp_to_ENST00000486572_5end | ||
|cluster_id=chr17:48265923..48266006,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_15_at_COL1A1_5end | |description=CAGE_peak_15_at_COL1A1_5end | ||
|id=chr17:48265923..48266006,- | |id=chr17:48265923..48266006,- | ||
|ontology_enrichment_celltype=CL:0000055!1.75e-39!180;CL:0000057!1.82e-24!75;CL:0000183!8.83e-17!59;CL:0000680!2.84e-16!57;CL:0000056!2.84e-16!57;CL:0000355!2.84e-16!57;CL:0000187!1.14e-15!54;CL:0000393!4.24e-13!60;CL:0000211!4.24e-13!60;CL:0000192!4.77e-12!42;CL:0000514!4.77e-12!42;CL:0000048!2.78e-10!430;CL:0000723!2.52e-09!436;CL:0000034!9.81e-09!444;CL:0000359!4.43e-08!32;CL:0002334!6.00e-08!12;CL:0000499!3.07e-07!27;CL:0002620!3.57e-07!23;CL:0002371!4.39e-07!591;CL:0002494!5.90e-07!16;CL:0000222!8.00e-07!119 | |ontology_enrichment_celltype=CL:0000055!1.75e-39!180;CL:0000057!1.82e-24!75;CL:0000183!8.83e-17!59;CL:0000680!2.84e-16!57;CL:0000056!2.84e-16!57;CL:0000355!2.84e-16!57;CL:0000187!1.14e-15!54;CL:0000393!4.24e-13!60;CL:0000211!4.24e-13!60;CL:0000192!4.77e-12!42;CL:0000514!4.77e-12!42;CL:0000048!2.78e-10!430;CL:0000723!2.52e-09!436;CL:0000034!9.81e-09!444;CL:0000359!4.43e-08!32;CL:0002334!6.00e-08!12;CL:0000499!3.07e-07!27;CL:0002620!3.57e-07!23;CL:0002371!4.39e-07!591;CL:0002494!5.90e-07!16;CL:0000222!8.00e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000057;1.76e-10;73!CL:0000134;1.83e-10;55!CL:0000187;5.74e-10;55!CL:0000723;8.06e-10;61!CL:0000192;9.74e-10;43!CL:0002320;1.20e-09;188!CL:0000048;1.74e-09;58!CL:0002334;6.65e-09;12!CL:0000359;2.58e-08;32!CL:0000393;5.85e-08;61!CL:0000211;5.85e-08;61!CL:0000499;7.18e-08;28!CL:0002494;7.67e-08;16!CL:0002620;1.14e-07;23!CL:0000327;1.66e-07;15!CL:0000034;7.62e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.99e-28,76;CL:0000680,2.35e-18,58;CL:0000056,2.35e-18,58;CL:0000355,2.35e-18,58;CL:0000187,1.18e-17,55;CL:0000048,2.14e-17,427;CL:0000723,2.49e-16,433;CL:0000034,5.64e-15,441;CL:0000393,3.10e-14,61;CL:0000211,3.10e-14,61;CL:0000192,1.83e-13,43;CL:0000514,1.83e-13,43;CL:0002334,5.84e-09,12;CL:0000359,1.24e-08,32;CL:0000222,2.09e-08,121;CL:0002320,2.09e-08,361;CL:0000499,7.31e-08,28;CL:0002494,8.20e-08,16;CL:0002620,1.15e-07,23;CL:0000327,1.65e-07,15;CL:0000134,6.09e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000355;6.93e-10;58!CL:0000514;9.74e-10;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.80e-19!83;UBERON:0002329!5.80e-19!83;UBERON:0003077!5.80e-19!83;UBERON:0003059!5.80e-19!83;UBERON:0007282!5.80e-19!83;UBERON:0009618!5.80e-19!83;UBERON:0007285!5.80e-19!83;UBERON:0004290!2.36e-17!70;UBERON:0002385!9.49e-17!63;UBERON:0001015!9.49e-17!63;UBERON:0000383!9.49e-17!63;UBERON:0001134!1.03e-16!61;UBERON:0002036!1.03e-16!61;UBERON:0003082!1.03e-16!61;UBERON:0005256!6.72e-15!143;UBERON:0000486!1.69e-13!82;UBERON:0002100!1.16e-10!216;UBERON:0000475!1.78e-08!365;UBERON:0003104!1.91e-08!238;UBERON:0009142!1.91e-08!238;UBERON:0004872!3.57e-08!84;UBERON:0001013!8.29e-08!14;UBERON:0000481!1.29e-07!347;UBERON:0003102!3.36e-07!95;UBERON:0000490!6.12e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.52e-09;198!UBERON:0001013;5.70e-08;14!UBERON:0002204;9.60e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,5.81e-19,73;UBERON:0002329,7.99e-19,71;UBERON:0003059,7.99e-19,71;UBERON:0007282,7.99e-19,71;UBERON:0004290,7.99e-19,71;UBERON:0009618,7.99e-19,71;UBERON:0001134,1.53e-18,62;UBERON:0002036,1.53e-18,62;UBERON:0003082,1.53e-18,62;UBERON:0007503,1.87e-18,78;UBERON:0003077,2.85e-18,72;UBERON:0007285,2.85e-18,72;UBERON:0002385,4.88e-18,64;UBERON:0001015,4.88e-18,64;UBERON:0000383,4.88e-18,64;UBERON:0000486,6.64e-15,83;UBERON:0005256,1.26e-14,122;UBERON:0003104,1.06e-13,160;UBERON:0009142,1.06e-13,160;UBERON:0002384,1.30e-08,371;UBERON:0000926,2.04e-08,315;UBERON:0004120,2.04e-08,315;UBERON:0006603,2.04e-08,315;UBERON:0002199,3.28e-08,46;UBERON:0002416,3.28e-08,46;UBERON:0001013,5.50e-08,14;UBERON:0004872,6.45e-08,83;UBERON:0003102,8.82e-08,99;UBERON:0002100,3.71e-07,199;UBERON:0000490,5.30e-07,148 | |||
|phase1_expression=23.2548325466312,33.3996817269934,39.18532433868,37.0271203906583,41.5673817817378,30.5318483435129,53.1929744153452,1.89515962028049,3.13422753839806,0.737201809504527,0,2.40285509343189,14.5071838025649,6.80714941280256,4.97096063591874,3.36162573225888,3.61616716814386,1.46062018077475,1.95173119516203,7.75662665883764,13.4640456221207,15.9861907953825,0.572471974262113,0.136874425072884,1.75759695432724,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,56.0755792522112,7.37770945674,8.18320395798594,18.7948359239974,19.5521785147997,26.2172199319091,42.9454411407594,25.3050132557371,1.13441780596881,6.20842312895179,5.35792192728069,0.916853528483988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,60.1336061551335,21.9070785179723,6.88527740228738,103.261183469573,22.6987764606949,9.53151920241922,16.0123493594557,47.853504392929,4.04574346019696,5.25371621071783,3.26923806226917,22.09818443616,17.86145365888,1.64025002283658,1.87296046098192,0,3.28787097213962,1.17434498643765,0.809364721840658,1.26405726032024,2.04154171254893,1.59684612505298,3.71972812232756,84.3482028670258,84.812556742545,29.1251635820168,38.0867615162606,1.68336113954066,3.62843707628696,1.6623846929051,11.8523957637826,27.2774138261127,39.2121333746218,4.8775838758809,15.606898304931,26.6946736023209,20.3454625113179,19.5059212454861,13.4998813302355,17.0042756430115,16.5644002135115,18.5653965465393,12.8616846812782,12.3692549379616,15.9246324651178,17.6194201932505,22.7206139210633,5.54136540252021,5.4259389539356,0,0.818238361772504,0,0.243947412259191,0,0.348581828608555,0.414644220061482,0,0,6.25798129319264,13.5080597020506,1.38134921352481,6.03678306441573,6.49691533502627,0.118306800039844,0.168584690078102,0,0,0,0.237270619111097,0.269662616320329,0,0.38474715694639,0,26.6459370226547,30.0449028271922,49.9829618710843,0,0,1.77236972004421,0,0,5.66173773985134,0,0,0,0,1.62904152655162,5.19967392639789,0,0.463721619900307,10.5667824812239,0.288732895522148,0,0,0,0,0,0,0,0,2.85569617938061,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,6.84289784090821,0.616964956219941,0,0,5.94294747030412,12.2068819273318,4.32695886343605,14.4784321648711,35.7656445851882,19.441963308788,16.2222251116771,18.7213386440459,4.62973273671856,2.83698264046557,7.72624319146688,27.5947527760225,79.7653759925421,25.5204504402038,8.46914079163711,22.0343008220378,7.12756685640086,2.1100756394171,0,0.899756920638513,0,0,0,27.0776086705488,53.9851098420335,1.42636905040718,5.79125226670317,5.75333703141074,1.07436577943937,0,0,0,0,0.508189248444927,1.30139853857622,0,0.502548796003046,0,0,0,0,6.50264906111441,11.5039219843726,2.71265023699736,101.281809565503,94.0320770961042,50.9378800559609,21.7883031886447,18.6586581831186,31.8370505678379,12.4167685551006,10.627609576567,13.8276876406277,8.08017614553171,26.8247585723955,38.088920043005,0,0,0,1.5156378572313,21.6366071363646,24.1912234663744,43.4188663682859,19.643132580872,81.1107672911583,58.0470346128325,17.9097537173346,79.1401292026549,31.1677939534481,4.93471020168498,19.8869132350702,6.48804532509092,7.78881643775432,10.8075651967762,0,0.601519410909855,0,16.648094983868,17.1165697926314,23.2090214478181,0,0.0770153371044148,0,0,0.211103257785751,0,0,1.72732732881711,9.25363516141736,4.06419656315779,9.03041592938736,0,0,1.11937377361089,0,0,0,1.64007322849853,0.325378394664303,0.9273691048295,3.84591752237042,1.81520899825294,4.01985876597321,1.95018073810956,30.5299466703903,5.7035723792352,2.61882649094895,2.76306614507033,2.89456802217514,7.30457665104261,7.97591816528257,4.09087811597284,36.6811986864558,0.495854746082934,2.11409074101617,0,1.11273558941105,6.97268323945929,69.5735286495715,3.485186350803,5.5446044431696,0,0.869932992075073,3.15051172476664,1.28812398067792,5.21021717103534,7.2767267685307,17.9192382288395,11.2595028176987,5.13526785640705,3.5002357271853,6.27958912159384,8.45400550641579,14.824999605747,10.7209286134575,2.83055474202642,9.5106192703805,1.68503382495592,15.1166459117773,5.11798328225697,3.16950440270266,12.0119922039027,44.5427110654195,14.6910551606316,11.5786722144686,3.98063385144732,3.06915619677634,9.83918408253369,19.0209478093524,3.04365565444056,2.478587984798,4.22543403798362,5.73645408816206,10.9056435524564,3.5667105148125,2.83808851256478,13.2997810237528,16.1354497550352,3.41525856389144,9.79817216685952,0,0.670302275535787,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0.852408440419239,0.23874448473769,0,0,0,0,0,0,0,1.59398390600856,0.552567831062295,0,0,0.246169610922139,31.1039587661807,0,0,0,1.28236427328014,0,4.44547960578548,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0.694499979733169,0,0.12059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| ||
|short_description=p15@COL1A1 | |short_description=p15@COL1A1 | ||
}} | }} |
Latest revision as of 00:15, 16 September 2015
Short description: | p15@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -8bp_to_ENST00000486572_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.99e-28 | 76 |
muscle precursor cell | 2.35e-18 | 58 |
myoblast | 2.35e-18 | 58 |
multi-potent skeletal muscle stem cell | 2.35e-18 | 58 |
muscle cell | 1.18e-17 | 55 |
multi fate stem cell | 2.14e-17 | 427 |
somatic stem cell | 2.49e-16 | 433 |
stem cell | 5.64e-15 | 441 |
electrically responsive cell | 3.10e-14 | 61 |
electrically active cell | 3.10e-14 | 61 |
smooth muscle cell | 1.83e-13 | 43 |
smooth muscle myoblast | 1.83e-13 | 43 |
preadipocyte | 5.84e-09 | 12 |
vascular associated smooth muscle cell | 1.24e-08 | 32 |
mesodermal cell | 2.09e-08 | 121 |
connective tissue cell | 2.09e-08 | 361 |
stromal cell | 7.31e-08 | 28 |
cardiocyte | 8.20e-08 | 16 |
skin fibroblast | 1.15e-07 | 23 |
extracellular matrix secreting cell | 1.65e-07 | 15 |
mesenchymal cell | 6.09e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 5.81e-19 | 73 |
somite | 7.99e-19 | 71 |
presomitic mesoderm | 7.99e-19 | 71 |
presumptive segmental plate | 7.99e-19 | 71 |
dermomyotome | 7.99e-19 | 71 |
trunk paraxial mesoderm | 7.99e-19 | 71 |
skeletal muscle tissue | 1.53e-18 | 62 |
striated muscle tissue | 1.53e-18 | 62 |
myotome | 1.53e-18 | 62 |
epithelial vesicle | 1.87e-18 | 78 |
paraxial mesoderm | 2.85e-18 | 72 |
presumptive paraxial mesoderm | 2.85e-18 | 72 |
muscle tissue | 4.88e-18 | 64 |
musculature | 4.88e-18 | 64 |
musculature of body | 4.88e-18 | 64 |
multilaminar epithelium | 6.64e-15 | 83 |
trunk mesenchyme | 1.26e-14 | 122 |
mesenchyme | 1.06e-13 | 160 |
entire embryonic mesenchyme | 1.06e-13 | 160 |
connective tissue | 1.30e-08 | 371 |
mesoderm | 2.04e-08 | 315 |
mesoderm-derived structure | 2.04e-08 | 315 |
presumptive mesoderm | 2.04e-08 | 315 |
integument | 3.28e-08 | 46 |
integumental system | 3.28e-08 | 46 |
adipose tissue | 5.50e-08 | 14 |
splanchnic layer of lateral plate mesoderm | 6.45e-08 | 83 |
surface structure | 8.82e-08 | 99 |
trunk | 3.71e-07 | 199 |
unilaminar epithelium | 5.30e-07 | 148 |