FFCP PHASE1:Hg19::chr12:52908631..52908640,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52908631..52908640,- | |||
|coexpression_cluster_id=C1673 | |||
|description=CAGE_peak_at_chr12:52908631..52908640,- | |description=CAGE_peak_at_chr12:52908631..52908640,- | ||
|id=chr12:52908631..52908640,- | |id=chr12:52908631..52908640,- | ||
|ontology_enrichment_celltype=CL:0002076!8.37e-34!43;CL:0000223!1.18e-24!59;CL:0000066!4.47e-22!254;CL:0002368!4.23e-20!13;CL:0002251!3.36e-19!21;CL:0002159!2.52e-13!13;CL:0000244!2.57e-11!4;CL:0000731!2.57e-11!4;CL:0000076!6.89e-11!62;CL:0002202!8.03e-11!9;CL:0002632!8.03e-11!9;CL:0000622!6.18e-10!5;CL:0002328!1.17e-09!3;CL:0002623!1.17e-09!3;CL:0002621!7.66e-09!3;CL:0000068!1.08e-08!3;CL:0000349!1.08e-08!3;CL:0000069!1.08e-08!3;CL:0002577!1.08e-08!3;CL:0000307!1.08e-08!3;CL:0000377!1.08e-08!3;CL:0000154!2.92e-08!6;CL:0000240!4.36e-08!6;CL:0000311!4.36e-08!6;CL:0000079!4.36e-08!6;CL:0000237!4.36e-08!6;CL:0000036!4.36e-08!6;CL:0000357!4.36e-08!6;CL:0000114!4.36e-08!6;CL:0002077!5.88e-08!33;CL:0000575!3.15e-07!2;CL:0000220!7.57e-07!246 | |ontology_enrichment_celltype=CL:0002076!8.37e-34!43;CL:0000223!1.18e-24!59;CL:0000066!4.47e-22!254;CL:0002368!4.23e-20!13;CL:0002251!3.36e-19!21;CL:0002159!2.52e-13!13;CL:0000244!2.57e-11!4;CL:0000731!2.57e-11!4;CL:0000076!6.89e-11!62;CL:0002202!8.03e-11!9;CL:0002632!8.03e-11!9;CL:0000622!6.18e-10!5;CL:0002328!1.17e-09!3;CL:0002623!1.17e-09!3;CL:0002621!7.66e-09!3;CL:0000068!1.08e-08!3;CL:0000349!1.08e-08!3;CL:0000069!1.08e-08!3;CL:0002577!1.08e-08!3;CL:0000307!1.08e-08!3;CL:0000377!1.08e-08!3;CL:0000154!2.92e-08!6;CL:0000240!4.36e-08!6;CL:0000311!4.36e-08!6;CL:0000079!4.36e-08!6;CL:0000237!4.36e-08!6;CL:0000036!4.36e-08!6;CL:0000357!4.36e-08!6;CL:0000114!4.36e-08!6;CL:0002077!5.88e-08!33;CL:0000575!3.15e-07!2;CL:0000220!7.57e-07!246 | ||
|ontology_enrichment_celltype_v019=CL:0002076;8.46e-27;42!CL:0002368;1.85e-24;13!CL:0002159;6.53e-18;14!CL:0000622;1.22e-17;5!CL:0002623;8.47e-17;3!CL:0002328;1.64e-16;3!CL:0002251;1.29e-15;20!CL:0000154;1.01e-14;6!CL:0002202;3.44e-14;9!CL:0002632;3.44e-14;9!CL:0000240;3.69e-14;6!CL:0000311;3.69e-14;6!CL:0000079;3.69e-14;6!CL:0000237;3.69e-14;6!CL:0000575;3.93e-12;2!CL:0000312;3.87e-10;5!CL:0000150;7.64e-10;9!CL:0000362;9.59e-10;9!CL:0000307;1.41e-07;3!CL:0002621;1.41e-07;3!CL:0002252;6.76e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,4.67e-32,42;CL:0002368,1.83e-24,13;CL:0000223,3.65e-22,58;CL:0002159,6.46e-18,14;CL:0000622,1.51e-17,5;CL:0002328,1.11e-16,3;CL:0002623,1.11e-16,3;CL:0002251,1.19e-15,20;CL:0000154,1.20e-14,6;CL:0000066,1.76e-14,253;CL:0000240,2.58e-14,6;CL:0000311,2.58e-14,6;CL:0000079,2.58e-14,6;CL:0000237,2.58e-14,6;CL:0000036,2.58e-14,6;CL:0000357,2.58e-14,6;CL:0000114,2.58e-14,6;CL:0002202,3.80e-14,9;CL:0002632,3.80e-14,9;CL:0000575,3.73e-12,2;CL:0000312,3.64e-10,5;CL:0000150,8.57e-10,9;CL:0000362,9.17e-10,9;CL:0002621,1.41e-07,3;CL:0000068,2.04e-07,3;CL:0000069,2.04e-07,3;CL:0000307,2.04e-07,3;CL:0000377,2.04e-07,3;CL:0002252,6.59e-07,1;CL:0002077,8.01e-07,34;CL:0002321,9.70e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000357;3.69e-14;6!CL:0000114;3.69e-14;6!CL:0000223;2.63e-11;58!CL:0000377;1.41e-07;3 | |||
|ontology_enrichment_disease=DOID:1749!7.61e-20!14 | |ontology_enrichment_disease=DOID:1749!7.61e-20!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!7.69e-17!72;UBERON:0000166!4.86e-16!21;UBERON:0004119!7.91e-16!169;UBERON:0000925!7.91e-16!169;UBERON:0006595!7.91e-16!169;UBERON:0000161!1.40e-15!35;UBERON:0000165!1.71e-13!28;UBERON:0000930!1.71e-13!28;UBERON:0000365!2.41e-13!5;UBERON:0003729!4.07e-13!5;UBERON:0003102!1.49e-11!95;UBERON:0007196!3.79e-11!14;UBERON:0001558!3.79e-11!14;UBERON:0005910!4.64e-11!6;UBERON:0003343!1.42e-10!4;UBERON:0004785!1.42e-10!4;UBERON:0004815!1.17e-09!3;UBERON:0002031!1.17e-09!3;UBERON:0000344!1.41e-09!12;UBERON:0001444!2.49e-09!48;UBERON:0000065!4.68e-09!53;UBERON:0003126!5.50e-09!7;UBERON:0001005!5.50e-09!7;UBERON:0001949!7.66e-09!3;UBERON:0000974!1.62e-08!10;UBERON:0001007!1.52e-07!155;UBERON:0001555!1.52e-07!155;UBERON:0007026!1.52e-07!155;UBERON:0002185!2.57e-07!4 | |ontology_enrichment_uberon=UBERON:0001004!7.69e-17!72;UBERON:0000166!4.86e-16!21;UBERON:0004119!7.91e-16!169;UBERON:0000925!7.91e-16!169;UBERON:0006595!7.91e-16!169;UBERON:0000161!1.40e-15!35;UBERON:0000165!1.71e-13!28;UBERON:0000930!1.71e-13!28;UBERON:0000365!2.41e-13!5;UBERON:0003729!4.07e-13!5;UBERON:0003102!1.49e-11!95;UBERON:0007196!3.79e-11!14;UBERON:0001558!3.79e-11!14;UBERON:0005910!4.64e-11!6;UBERON:0003343!1.42e-10!4;UBERON:0004785!1.42e-10!4;UBERON:0004815!1.17e-09!3;UBERON:0002031!1.17e-09!3;UBERON:0000344!1.41e-09!12;UBERON:0001444!2.49e-09!48;UBERON:0000065!4.68e-09!53;UBERON:0003126!5.50e-09!7;UBERON:0001005!5.50e-09!7;UBERON:0001949!7.66e-09!3;UBERON:0000974!1.62e-08!10;UBERON:0001007!1.52e-07!155;UBERON:0001555!1.52e-07!155;UBERON:0007026!1.52e-07!155;UBERON:0002185!2.57e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.64e-16;3!UBERON:0002031;1.64e-16;3!UBERON:0000165;1.01e-10;28!UBERON:0002185;4.18e-10;5!UBERON:0000161;2.00e-09;19!UBERON:0000166;2.00e-09;19!UBERON:0001003;1.01e-08;15!UBERON:0007376;1.01e-08;15!UBERON:0001044;1.24e-08;6!UBERON:0003293;1.24e-08;6!UBERON:0003294;1.24e-08;6!UBERON:0010047;1.24e-08;6!UBERON:0003408;1.24e-08;6!UBERON:0000167;1.24e-08;6!UBERON:0007196;2.04e-08;15!UBERON:0001558;2.04e-08;15!UBERON:0001949;1.41e-07;3!UBERON:0000485;2.44e-07;7!UBERON:0010371;2.85e-07;31!UBERON:0000486;6.12e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.11e-16,3;UBERON:0002031,1.11e-16,3;UBERON:0003102,3.52e-13,99;UBERON:0001004,1.40e-12,74;UBERON:0000166,8.29e-11,22;UBERON:0000165,2.45e-10,29;UBERON:0000930,2.45e-10,29;UBERON:0002185,3.32e-10,5;UBERON:0004119,1.41e-09,160;UBERON:0000925,1.41e-09,160;UBERON:0006595,1.41e-09,160;UBERON:0000033,3.29e-09,56;UBERON:0001444,5.99e-09,49;UBERON:0001003,9.70e-09,15;UBERON:0007376,9.70e-09,15;UBERON:0007383,9.70e-09,15;UBERON:0001044,1.41e-08,6;UBERON:0003293,1.41e-08,6;UBERON:0003294,1.41e-08,6;UBERON:0010047,1.41e-08,6;UBERON:0000167,1.41e-08,6;UBERON:0007196,2.16e-08,15;UBERON:0001558,2.16e-08,15;UBERON:0000153,4.06e-08,62;UBERON:0007811,4.06e-08,62;UBERON:0000161,4.61e-08,36;UBERON:0001949,1.41e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67768489791571,4.2168828628955,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.73583874780305,7.78647329847302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.23312862571041,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,1.09098448236334,1.72082757233402,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.96325770603289,2.24803506515239,3.11639814476056,1.94435734832912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17587489739202,0.992425680696705,0.895585227028483,1.16253575405585,0.383382679165211,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,1.66435439510497,0.907170879989041,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,1.65745780084613,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.50060246036521,0,0,0,0,0,0,0,0,0,0.826424576804891,3.0750410778417,1.78657797492418,5.15904682363305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15466535270614,0.670302275535787,1.08890984861323,0,0.86101074534246,1.68471475667626,3.54744122829341,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.68592842519078,0,0,0,0,1.05562704063997,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568967241427498,0,0,0,0,0,0,0,0,0,0,0,0,2.09135616417905,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.685946781900644,0.0870592065804026,0,0,0,0,0,0.969890164884194,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,1.64985824231757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68347750079413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.926404341482917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0.11796972334774,4.21885776599862,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07216164163037,2.21934020222135,14.5164528980959,0,0,0,1.27016115057279,0,0,0,0,0,0,0,0,0,2.4285549652957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0,0.0620747142958579,0,0,0,2.61260097476354,0,0.134704106029175,0.0717222053926763,0.332660356546013,0.162806537221949,0,0,0,0,0,1.62758471326295,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67768489791571,4.2168828628955,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.73583874780305,7.78647329847302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.23312862571041,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,1.09098448236334,1.72082757233402,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.96325770603289,2.24803506515239,3.11639814476056,1.94435734832912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17587489739202,0.992425680696705,0.895585227028483,1.16253575405585,0.383382679165211,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,1.66435439510497,0.907170879989041,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,1.65745780084613,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.50060246036521,0,0,0,0,0,0,0,0,0,0.826424576804891,3.0750410778417,1.78657797492418,5.15904682363305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15466535270614,0.670302275535787,1.08890984861323,0,0.86101074534246,1.68471475667626,3.54744122829341,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.68592842519078,0,0,0,0,1.05562704063997,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568967241427498,0,0,0,0,0,0,0,0,0,0,0,0,2.09135616417905,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.685946781900644,0.0870592065804026,0,0,0,0,0,0.969890164884194,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,1.64985824231757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68347750079413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.926404341482917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0.11796972334774,4.21885776599862,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07216164163037,2.21934020222135,14.5164528980959,0,0,0,1.27016115057279,0,0,0,0,0,0,0,0,0,2.4285549652957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0,0.0620747142958579,0,0,0,2.61260097476354,0,0.134704106029175,0.0717222053926763,0.332660356546013,0.162806537221949,0,0,0,0,0,1.62758471326295,0,0,0 | ||
|short_description=p@chr12:52908631..52908640,- | |short_description=p@chr12:52908631..52908640,- | ||
}} | }} |
Latest revision as of 09:35, 24 July 2015
Short description: | p@chr12:52908631..52908640, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52908631..52908640, - |
Coexpression cluster: | C1673_salivary_Corneal_Keratinocyte_Sebocyte_Small_Bronchial_tongue |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.11e-16 | 3 |
epithelium of bronchus | 1.11e-16 | 3 |
surface structure | 3.52e-13 | 99 |
respiratory system | 1.40e-12 | 74 |
oral opening | 8.29e-11 | 22 |
mouth | 2.45e-10 | 29 |
stomodeum | 2.45e-10 | 29 |
bronchus | 3.32e-10 | 5 |
endoderm-derived structure | 1.41e-09 | 160 |
endoderm | 1.41e-09 | 160 |
presumptive endoderm | 1.41e-09 | 160 |
head | 3.29e-09 | 56 |
subdivision of head | 5.99e-09 | 49 |
skin epidermis | 9.70e-09 | 15 |
outer epithelium | 9.70e-09 | 15 |
enveloping layer of ectoderm | 9.70e-09 | 15 |
saliva-secreting gland | 1.41e-08 | 6 |
gland of oral region | 1.41e-08 | 6 |
gland of foregut | 1.41e-08 | 6 |
oral gland | 1.41e-08 | 6 |
oral cavity | 1.41e-08 | 6 |
tracheobronchial tree | 2.16e-08 | 15 |
lower respiratory tract | 2.16e-08 | 15 |
anterior region of body | 4.06e-08 | 62 |
craniocervical region | 4.06e-08 | 62 |
orifice | 4.61e-08 | 36 |
gingival epithelium | 1.41e-07 | 3 |