FFCP PHASE1:Hg19::chr12:7848364..7848378,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9573 | |EntrezGene=9573 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4218 | |HGNC=4218 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NR23 | |UniProt=Q9NR23 | ||
|association_with_transcript=0bp_to_ENST00000329913_5end | |association_with_transcript=0bp_to_ENST00000329913_5end | ||
|cluster_id=chr12:7848364..7848378,- | |||
|coexpression_cluster_id=C157 | |||
|description=CAGE_peak_1_at_GDF3_5end | |description=CAGE_peak_1_at_GDF3_5end | ||
|id=chr12:7848364..7848378,- | |id=chr12:7848364..7848378,- | ||
|ontology_enrichment_celltype=CL:0000115!5.01e-22!35;CL:0002078!7.38e-18!44;CL:0002139!2.42e-17!24;CL:0002543!1.31e-12!6;CL:0000071!1.16e-11!18;CL:0002546!1.16e-11!18;CL:0002322!1.52e-11!5;CL:0000213!4.93e-11!57;CL:0000215!4.93e-11!57;CL:0000039!1.03e-07!7;CL:0000586!1.03e-07!7;CL:0005020!1.62e-07!6;CL:0002138!1.62e-07!6;CL:0005022!1.62e-07!6;CL:0002618!2.77e-07!3 | |ontology_enrichment_celltype=CL:0000115!5.01e-22!35;CL:0002078!7.38e-18!44;CL:0002139!2.42e-17!24;CL:0002543!1.31e-12!6;CL:0000071!1.16e-11!18;CL:0002546!1.16e-11!18;CL:0002322!1.52e-11!5;CL:0000213!4.93e-11!57;CL:0000215!4.93e-11!57;CL:0000039!1.03e-07!7;CL:0000586!1.03e-07!7;CL:0005020!1.62e-07!6;CL:0002138!1.62e-07!6;CL:0005022!1.62e-07!6;CL:0002618!2.77e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002322;2.79e-29;5!CL:0002543;1.17e-22;6!CL:0002618;2.90e-17;3!CL:0000115;3.94e-16;36!CL:0000071;4.53e-14;18!CL:0000039;5.90e-14;7!CL:0000586;5.90e-14;7!CL:0002262;4.26e-12;2!CL:1000398;4.26e-12;2!CL:0002188;1.69e-10;5!CL:0002139;2.44e-10;24!CL:0002321;1.32e-09;15!CL:0000540;2.74e-09;6!CL:0000404;2.74e-09;6!CL:0002078;1.20e-08;45!CL:0000213;1.78e-08;58!CL:0000215;1.78e-08;58!CL:1000746;1.25e-07;7!CL:1000612;1.25e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.80e-29,5;CL:0002543,5.24e-23,6;CL:0000115,1.02e-19,36;CL:0002618,1.91e-17,3;CL:0002078,2.63e-15,45;CL:0000071,3.29e-14,18;CL:0002546,3.29e-14,18;CL:0000039,5.90e-14,7;CL:0000586,5.90e-14,7;CL:0002262,3.70e-12,2;CL:1000398,3.70e-12,2;CL:0000213,2.36e-11,58;CL:0000215,2.36e-11,58;CL:0002188,1.46e-10,5;CL:0002139,1.93e-10,24;CL:0000540,2.82e-09,6;CL:0000031,2.82e-09,6;CL:0000404,2.82e-09,6;CL:1000746,1.12e-07,7;CL:1000612,1.12e-07,7;CL:0000047,4.63e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.55e-14;10!UBERON:0005564;1.55e-14;10!CL:0002546;4.53e-14;18!CL:0000031;2.74e-09;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3095;5.10e-12;22!DOID:2994;5.10e-12;22!DOID:9119;5.52e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.76e-12,22;DOID:2994,5.76e-12,22;DOID:9119,5.37e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0003135!1.13e-13!11;UBERON:0000473!4.44e-12!8;UBERON:0001986!1.16e-11!18;UBERON:0004638!1.16e-11!18;UBERON:0004852!1.16e-11!18;UBERON:0001638!1.63e-10!9;UBERON:0003920!1.63e-10!9;UBERON:0004582!1.63e-10!9;UBERON:0000487!4.88e-09!22;UBERON:0000055!1.01e-08!69;UBERON:0002465!5.05e-08!10;UBERON:0001473!6.60e-08!8;UBERON:0004536!6.60e-08!8;UBERON:0006558!6.60e-08!8;UBERON:0006914!1.23e-07!25;UBERON:0002049!1.33e-07!79;UBERON:0007798!1.33e-07!79;UBERON:0007023!3.07e-07!115;UBERON:0003101!4.45e-07!22;UBERON:0000079!4.45e-07!22 | |ontology_enrichment_uberon=UBERON:0003135!1.13e-13!11;UBERON:0000473!4.44e-12!8;UBERON:0001986!1.16e-11!18;UBERON:0004638!1.16e-11!18;UBERON:0004852!1.16e-11!18;UBERON:0001638!1.63e-10!9;UBERON:0003920!1.63e-10!9;UBERON:0004582!1.63e-10!9;UBERON:0000487!4.88e-09!22;UBERON:0000055!1.01e-08!69;UBERON:0002465!5.05e-08!10;UBERON:0001473!6.60e-08!8;UBERON:0004536!6.60e-08!8;UBERON:0006558!6.60e-08!8;UBERON:0006914!1.23e-07!25;UBERON:0002049!1.33e-07!79;UBERON:0007798!1.33e-07!79;UBERON:0007023!3.07e-07!115;UBERON:0003101!4.45e-07!22;UBERON:0000079!4.45e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0001638;4.66e-15;9!UBERON:0003920;4.66e-15;9!UBERON:0004582;4.66e-15;9!UBERON:0004638;4.53e-14;18!UBERON:0001986;4.53e-14;18!UBERON:0004852;4.53e-14;18!UBERON:0000473;3.19e-12;8!UBERON:0001281;4.26e-12;2!UBERON:0003497;4.26e-12;2!UBERON:0003909;4.26e-12;2!UBERON:0003835;4.26e-12;2!UBERON:0000487;2.34e-11;22!UBERON:0002066;1.43e-10;5!UBERON:0006914;6.85e-10;25!UBERON:0000353;4.94e-09;15!UBERON:0000922;6.25e-09;49!UBERON:0003135;6.63e-09;11!UBERON:0001280;2.37e-08;3!UBERON:0004647;2.37e-08;3!UBERON:0002106;3.02e-08;3!UBERON:0000074;1.25e-07;7!UBERON:0001229;1.25e-07;7!UBERON:0000991;8.99e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001638,2.75e-15,9;UBERON:0003920,2.75e-15,9;UBERON:0004582,2.75e-15,9;UBERON:0004638,3.29e-14,18;UBERON:0001986,3.29e-14,18;UBERON:0004852,3.29e-14,18;UBERON:0000473,3.19e-12,8;UBERON:0001281,3.70e-12,2;UBERON:0003497,3.70e-12,2;UBERON:0003909,3.70e-12,2;UBERON:0003835,3.70e-12,2;UBERON:0000487,1.81e-11,22;UBERON:0003887,2.56e-11,12;UBERON:0002066,1.12e-10,5;UBERON:0006914,5.48e-10,25;UBERON:0000353,4.37e-09,15;UBERON:0003135,6.63e-09,11;UBERON:0003886,1.05e-08,54;UBERON:0001280,2.16e-08,3;UBERON:0004647,2.16e-08,3;UBERON:0005171,2.16e-08,3;UBERON:0002106,3.13e-08,3;UBERON:0004854,3.13e-08,3;UBERON:0009034,3.13e-08,3;UBERON:0002095,3.13e-08,3;UBERON:0004782,3.13e-08,3;UBERON:0003281,3.13e-08,3;UBERON:0009664,3.13e-08,3;UBERON:0002296,3.13e-08,3;UBERON:0005602,3.13e-08,3;UBERON:0001179,3.13e-08,3;UBERON:0006293,3.13e-08,3;UBERON:0010532,1.12e-07,7;UBERON:0000074,1.12e-07,7;UBERON:0001229,1.12e-07,7;UBERON:0001230,1.12e-07,7;UBERON:0003220,1.12e-07,7;UBERON:0005749,1.12e-07,7;UBERON:0004199,1.12e-07,7;UBERON:0004209,1.12e-07,7;UBERON:0004198,1.12e-07,7;UBERON:0002553,1.67e-07,61;UBERON:0000058,4.04e-07,19;UBERON:0000991,9.05e-07,21;UBERON:0009196,9.05e-07,21;UBERON:0009117,9.05e-07,21;UBERON:0005564,9.05e-07,21;UBERON:0005103,9.08e-07,8;UBERON:0000083,9.08e-07,8;UBERON:0009201,9.08e-07,8;UBERON:0006553,9.08e-07,8;UBERON:0003074,9.08e-07,8;UBERON:0003060,9.08e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0.56530794192401,0,0,0,0.516833518338658,0.35576626268671,0.33472061276467,1.20848795132744,0,0.24406205754817,3.30896772311282,0,4.82218532734031,2.91888184414021,1.57656072676651,1.53316637465883,1.89853131913626,0.732806975721629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,48.1796139211902,32.7348527754069,78.895687208403,38.9765566857793,58.2861165522702,7.66452454059243,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,1.4763109092493,5.60967095213783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.761016608938393,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27466768141793,0.850468526382578,2.80690690932781,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66379164797602,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.276283915531148,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0.217294743844016,0,0,1.06606955203727,0,0.784901281975124,0.166211681900156,0,0,0,0,0.158936578980379,0,0,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0.31593289814244,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0.558564802544508,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,119.439589309509,7.56466901284786,4.15440338029185,0,0,0,0,0.709251365692784,1.10154635083496,0,0,0,0.714695326373367,0,0,0,0,0,0,0.82092520749339,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0.376051641746286,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0.156986185701028,0.157115589916002,0,0,0.215927591218621,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,1.09279780251979,0,0,0,0,0,0,0,1.4097587696978,2.06265241515447,0,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,1.38783067318587,16.2805702225906,1.0135880080915,358.796703032292,253.589317597017,89.3218423478693,1257.04760201197,0.227336094654718,0.267964130156178,0,0,0.426467963801962,0,0,0.186224142887574,0,0.25458863311266,0.404234377916439,0.217716747896961,0,0.0673520530145875,0.143444410785353,0.332660356546013,0,0,0,0,0,0.244482888365733,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0.56530794192401,0,0,0,0.516833518338658,0.35576626268671,0.33472061276467,1.20848795132744,0,0.24406205754817,3.30896772311282,0,4.82218532734031,2.91888184414021,1.57656072676651,1.53316637465883,1.89853131913626,0.732806975721629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,48.1796139211902,32.7348527754069,78.895687208403,38.9765566857793,58.2861165522702,7.66452454059243,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,1.4763109092493,5.60967095213783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.761016608938393,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27466768141793,0.850468526382578,2.80690690932781,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66379164797602,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.276283915531148,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0.217294743844016,0,0,1.06606955203727,0,0.784901281975124,0.166211681900156,0,0,0,0,0.158936578980379,0,0,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0.31593289814244,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0.558564802544508,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,119.439589309509,7.56466901284786,4.15440338029185,0,0,0,0,0.709251365692784,1.10154635083496,0,0,0,0.714695326373367,0,0,0,0,0,0,0.82092520749339,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0.376051641746286,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0.156986185701028,0.157115589916002,0,0,0.215927591218621,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,1.09279780251979,0,0,0,0,0,0,0,1.4097587696978,2.06265241515447,0,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,1.38783067318587,16.2805702225906,1.0135880080915,358.796703032292,253.589317597017,89.3218423478693,1257.04760201197,0.227336094654718,0.267964130156178,0,0,0.426467963801962,0,0,0.186224142887574,0,0.25458863311266,0.404234377916439,0.217716747896961,0,0.0673520530145875,0.143444410785353,0.332660356546013,0,0,0,0,0,0.244482888365733,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p1@GDF3 | |short_description=p1@GDF3 | ||
}} | }} |
Latest revision as of 22:57, 24 September 2015
Short description: | p1@GDF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GDF3_5end |
Coexpression cluster: | C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea |
Association with transcript: | 0bp_to_ENST00000329913_5end |
EntrezGene: | GDF3 |
HGNC: | 4218 |
UniProt: | Q9NR23 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.80e-29 | 5 |
vein endothelial cell | 5.24e-23 | 6 |
endothelial cell | 1.02e-19 | 36 |
endothelial cell of umbilical vein | 1.91e-17 | 3 |
meso-epithelial cell | 2.63e-15 | 45 |
blood vessel endothelial cell | 3.29e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.29e-14 | 18 |
germ line cell | 5.90e-14 | 7 |
germ cell | 5.90e-14 | 7 |
endothelial cell of sinusoid | 3.70e-12 | 2 |
endothelial cell of hepatic sinusoid | 3.70e-12 | 2 |
lining cell | 2.36e-11 | 58 |
barrier cell | 2.36e-11 | 58 |
glomerular endothelial cell | 1.46e-10 | 5 |
endothelial cell of vascular tree | 1.93e-10 | 24 |
neuron | 2.82e-09 | 6 |
neuroblast | 2.82e-09 | 6 |
electrically signaling cell | 2.82e-09 | 6 |
glomerular cell | 1.12e-07 | 7 |
kidney corpuscule cell | 1.12e-07 | 7 |
neuronal stem cell | 4.63e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.76e-12 | 22 |
germ cell cancer | 5.76e-12 | 22 |
acute myeloid leukemia | 5.37e-07 | 1 |