FFCP PHASE1:Hg19::chr13:45780761..45780774,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2963 | |EntrezGene=2963 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4653 | |HGNC=4653 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=271bp_to_ENST00000494087_5end | |association_with_transcript=271bp_to_ENST00000494087_5end | ||
|cluster_id=chr13:45780761..45780774,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_2_at_GTF2F2_5end | |description=CAGE_peak_2_at_GTF2F2_5end | ||
|id=chr13:45780761..45780774,+ | |id=chr13:45780761..45780774,+ | ||
|ontology_enrichment_celltype=CL:0002057!2.95e-15!42;CL:0000860!8.99e-14!45;CL:0002009!4.17e-09!65;CL:0002194!1.01e-08!63;CL:0000576!1.01e-08!63;CL:0000040!1.01e-08!63;CL:0000559!1.01e-08!63;CL:0000557!8.54e-08!71;CL:0000515!1.08e-07!4;CL:0000839!3.05e-07!70 | |ontology_enrichment_celltype=CL:0002057!2.95e-15!42;CL:0000860!8.99e-14!45;CL:0002009!4.17e-09!65;CL:0002194!1.01e-08!63;CL:0000576!1.01e-08!63;CL:0000040!1.01e-08!63;CL:0000559!1.01e-08!63;CL:0000557!8.54e-08!71;CL:0000515!1.08e-07!4;CL:0000839!3.05e-07!70 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.09e-35;33!CL:0002057;3.09e-35;33!CL:0000473;4.17e-23;39!CL:0000234;4.17e-23;39!CL:0002166;2.37e-18;3!CL:0000576;4.29e-15;48!CL:0000056;2.48e-14;4!CL:0000766;2.73e-10;69!CL:0000515;5.96e-09;3!CL:0000346;6.59e-09;3!CL:1000428;6.59e-09;3!CL:0000680;2.16e-08;7!CL:0000228;1.16e-07;1!CL:0002372;1.16e-07;1!CL:0000319;5.03e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.32e-29,42;CL:0002057,2.32e-29,42;CL:0000473,2.70e-25,48;CL:0000234,2.70e-25,48;CL:0002194,2.14e-22,59;CL:0000576,2.14e-22,59;CL:0000040,2.14e-22,59;CL:0000559,2.14e-22,59;CL:0002009,1.45e-21,61;CL:0000839,1.06e-19,66;CL:0000557,2.31e-19,67;CL:0002166,2.11e-18,3;CL:0000766,8.37e-18,72;CL:0000515,2.17e-14,4;CL:0000763,8.11e-11,108;CL:0000049,8.11e-11,108;CL:0002087,5.76e-10,115;CL:0002031,2.03e-09,120;CL:0000346,6.33e-09,3;CL:1000428,6.33e-09,3;CL:0000738,6.12e-08,136;CL:0000228,1.12e-07,1;CL:0002372,1.12e-07,1;CL:0000319,4.34e-07,1 | |||
|ontology_enrichment_development_v019=CL:0002057;4.88e-20;42!CL:0000515;2.48e-14;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060085;5.03e-07;1!DOID:3165;5.03e-07;1!DOID:0060121;5.03e-07;1!DOID:2438;5.03e-07;1!DOID:3030;5.03e-07;1!DOID:4418;5.03e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,4.34e-07,1;DOID:0060085,4.89e-07,1;DOID:3165,4.89e-07,1;DOID:0060121,4.89e-07,1;DOID:2438,4.89e-07,1;DOID:4418,4.89e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002204!4.03e-09!167;UBERON:0004765!2.27e-08!101;UBERON:0001434!2.27e-08!101;UBERON:0002371!1.44e-07!80;UBERON:0001474!3.56e-07!86 | |ontology_enrichment_uberon=UBERON:0002204!4.03e-09!167;UBERON:0004765!2.27e-08!101;UBERON:0001434!2.27e-08!101;UBERON:0002371!1.44e-07!80;UBERON:0001474!3.56e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0001708;6.62e-14;4!UBERON:0008895;6.62e-14;4!UBERON:0011159;3.15e-11;5!UBERON:0000412;6.59e-09;3!UBERON:0001992;6.59e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,7.77e-20,90;UBERON:0001434,1.80e-17,100;UBERON:0002371,1.05e-16,76;UBERON:0001474,2.98e-15,82;UBERON:0002204,3.71e-14,167;UBERON:0001708,6.06e-14,4;UBERON:0008895,6.06e-14,4;UBERON:0002405,4.49e-13,93;UBERON:0002390,3.03e-12,98;UBERON:0003061,3.03e-12,98;UBERON:0011159,2.94e-11,5;UBERON:0002193,8.11e-11,108;UBERON:0010188,1.84e-09,6;UBERON:0002539,1.84e-09,6;UBERON:0008816,1.84e-09,6;UBERON:0000412,6.33e-09,3;UBERON:0001992,6.33e-09,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0.123766352960047,0,1.34465029290355,0.602694528023977,0.730310090387373,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434021741431704,0,0,0,0,0,0,0.232429036905685,0,0,6.32923263108731,2.0492856522328,7.80391358632331,9.3081333798887,7.10033151942209,2.70852973188684,0,0.272906150057846,0,7.34601341690166,10.9115869205872,10.8687311385837,0,0.398927315243264,0.426224750532694,0.870627715885752,1.13477044938228,1.86846674698672,0.75374599577023,2.60741459210101,4.77815458351257,0,4.78760926783834,5.06339819905415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,1.19168262731897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0.89694817844431,0.213557388818567,0,0,0.206105058476878,0,0.18611685633159,0.843881661206331,0.194874010322397,0,0.0920498986422993,0,1.77504796258307,1.81353776809752,0,0.193260853163297,0.545492241181669,0.860413786167011,0,0,0,0,0,0.36497735907583,7.8224766164908,0.643240938192885,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,2.81201501960331,4.36753533317035,1.41775097242386,0.179117045405697,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0.299918973546171,0,0,0,0,0,9.98458335285029,2.89562613335158,0.205476322550383,3.58121926479791,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232420756919918,0,1.00253235151642,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0,0.464845549297286,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0.405820753925408,0,0,0.143411352204052,0.0982490410131212,0.35667105148125,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0.522355239482415,0,0,0,0,0,0,0,0,1.09633539717401,1.39100228192093,0,0,0.240476460754601,0,0,0,0,0,0,0.248505071130865,0,0.271808412147228,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.251567901752575,0,0,0,0,0.443565449968902,0.318593534327405,0,0,0,0,0,0,0,0,0.363697318405119,0,0.464033759878494,0,0,0.343395705182793,0,0,0.385239660814607,0.214441591374926,0,0.226705925512272,0.694567422971502,0,0.71635536432595,0,0,0.530067437837643,2.31496845925098,1.01365464391844,0,0,0,0,0,0.265729680626726,0,0,1.47463745252232,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0,0.115525666150338,0,0,0,0.0752103283492573,1.81534561833168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0.118332000730565,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0.0939839179798536,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0.0673520530145875,0,0,0.0814032686109745,0.533636729388577,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0.123766352960047,0,1.34465029290355,0.602694528023977,0.730310090387373,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434021741431704,0,0,0,0,0,0,0.232429036905685,0,0,6.32923263108731,2.0492856522328,7.80391358632331,9.3081333798887,7.10033151942209,2.70852973188684,0,0.272906150057846,0,7.34601341690166,10.9115869205872,10.8687311385837,0,0.398927315243264,0.426224750532694,0.870627715885752,1.13477044938228,1.86846674698672,0.75374599577023,2.60741459210101,4.77815458351257,0,4.78760926783834,5.06339819905415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,1.19168262731897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0.89694817844431,0.213557388818567,0,0,0.206105058476878,0,0.18611685633159,0.843881661206331,0.194874010322397,0,0.0920498986422993,0,1.77504796258307,1.81353776809752,0,0.193260853163297,0.545492241181669,0.860413786167011,0,0,0,0,0,0.36497735907583,7.8224766164908,0.643240938192885,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,2.81201501960331,4.36753533317035,1.41775097242386,0.179117045405697,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0.299918973546171,0,0,0,0,0,9.98458335285029,2.89562613335158,0.205476322550383,3.58121926479791,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232420756919918,0,1.00253235151642,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0,0.464845549297286,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0.405820753925408,0,0,0.143411352204052,0.0982490410131212,0.35667105148125,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0.522355239482415,0,0,0,0,0,0,0,0,1.09633539717401,1.39100228192093,0,0,0.240476460754601,0,0,0,0,0,0,0.248505071130865,0,0.271808412147228,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.251567901752575,0,0,0,0,0.443565449968902,0.318593534327405,0,0,0,0,0,0,0,0,0.363697318405119,0,0.464033759878494,0,0,0.343395705182793,0,0,0.385239660814607,0.214441591374926,0,0.226705925512272,0.694567422971502,0,0.71635536432595,0,0,0.530067437837643,2.31496845925098,1.01365464391844,0,0,0,0,0,0.265729680626726,0,0,1.47463745252232,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0,0.115525666150338,0,0,0,0.0752103283492573,1.81534561833168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0.118332000730565,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0.0939839179798536,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0.0673520530145875,0,0,0.0814032686109745,0.533636729388577,0,0,0,0,0,0,0,0 | ||
|short_description=p2@GTF2F2 | |short_description=p2@GTF2F2 | ||
}} | }} |
Latest revision as of 11:51, 17 September 2015
Short description: | p2@GTF2F2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GTF2F2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 271bp_to_ENST00000494087_5end |
EntrezGene: | GTF2F2 |
HGNC: | 4653 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.32e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.32e-29 | 42 |
defensive cell | 2.70e-25 | 48 |
phagocyte | 2.70e-25 | 48 |
monopoietic cell | 2.14e-22 | 59 |
monocyte | 2.14e-22 | 59 |
monoblast | 2.14e-22 | 59 |
promonocyte | 2.14e-22 | 59 |
macrophage dendritic cell progenitor | 1.45e-21 | 61 |
myeloid lineage restricted progenitor cell | 1.06e-19 | 66 |
granulocyte monocyte progenitor cell | 2.31e-19 | 67 |
epithelial cell of Malassez | 2.11e-18 | 3 |
myeloid leukocyte | 8.37e-18 | 72 |
skeletal muscle myoblast | 2.17e-14 | 4 |
myeloid cell | 8.11e-11 | 108 |
common myeloid progenitor | 8.11e-11 | 108 |
nongranular leukocyte | 5.76e-10 | 115 |
hematopoietic lineage restricted progenitor cell | 2.03e-09 | 120 |
hair follicle dermal papilla cell | 6.33e-09 | 3 |
stem cell of epidermis | 6.33e-09 | 3 |
leukocyte | 6.12e-08 | 136 |
multinucleate cell | 1.12e-07 | 1 |
myotube | 1.12e-07 | 1 |
mucus secreting cell | 4.34e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 7.77e-20 | 90 |
skeletal system | 1.80e-17 | 100 |
bone marrow | 1.05e-16 | 76 |
bone element | 2.98e-15 | 82 |
musculoskeletal system | 3.71e-14 | 167 |
jaw skeleton | 6.06e-14 | 4 |
splanchnocranium | 6.06e-14 | 4 |
immune system | 4.49e-13 | 93 |
hematopoietic system | 3.03e-12 | 98 |
blood island | 3.03e-12 | 98 |
primary subdivision of cranial skeletal system | 2.94e-11 | 5 |
hemolymphoid system | 8.11e-11 | 108 |
protuberance | 1.84e-09 | 6 |
pharyngeal arch | 1.84e-09 | 6 |
embryonic head | 1.84e-09 | 6 |
dermal papilla | 6.33e-09 | 3 |
papillary layer of dermis | 6.33e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 4.34e-07 | 1 |
organ system benign neoplasm | 4.89e-07 | 1 |
skin benign neoplasm | 4.89e-07 | 1 |
integumentary system benign neoplasm | 4.89e-07 | 1 |
dermis tumor | 4.89e-07 | 1 |
cutaneous fibrous histiocytoma | 4.89e-07 | 1 |