FFCP PHASE1:Hg19::chr1:203148057..203148072,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:203148057..203148072,+ | |||
|coexpression_cluster_id=C283 | |||
|description=CAGE_peak_at_chr1:203148057..203148072,+ | |description=CAGE_peak_at_chr1:203148057..203148072,+ | ||
|id=chr1:203148057..203148072,+ | |id=chr1:203148057..203148072,+ | ||
|ontology_enrichment_celltype=CL:0000153!9.63e-17!9;CL:0000447!9.63e-17!9;CL:0000135!2.54e-13!3;CL:0000386!2.54e-13!3;CL:0000388!2.54e-13!3;CL:0000667!1.30e-11!6;CL:0000058!1.30e-11!6;CL:0000138!1.30e-11!6;CL:0000499!3.55e-11!27;CL:0000327!1.66e-10!14;CL:0000235!2.25e-10!10;CL:0002540!5.96e-07!6;CL:0000214!8.60e-07!3 | |ontology_enrichment_celltype=CL:0000153!9.63e-17!9;CL:0000447!9.63e-17!9;CL:0000135!2.54e-13!3;CL:0000386!2.54e-13!3;CL:0000388!2.54e-13!3;CL:0000667!1.30e-11!6;CL:0000058!1.30e-11!6;CL:0000138!1.30e-11!6;CL:0000499!3.55e-11!27;CL:0000327!1.66e-10!14;CL:0000235!2.25e-10!10;CL:0002540!5.96e-07!6;CL:0000214!8.60e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000153;2.70e-46;9!CL:0000447;2.70e-46;9!CL:0000235;3.43e-31;6!CL:0000138;4.68e-31;6!CL:0000327;1.02e-27;15!CL:0000499;6.28e-26;28!CL:0000214;5.52e-17;3!CL:0000135;9.63e-17;3!CL:0000388;9.63e-17;3!CL:0000151;5.74e-09;36!CL:0002540;6.26e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,2.06e-46,9;CL:0000447,2.06e-46,9;CL:0000235,3.43e-31,6;CL:0000058,3.43e-31,6;CL:0000138,3.43e-31,6;CL:0000327,8.70e-28,15;CL:0000499,5.69e-26,28;CL:0000214,5.75e-17,3;CL:0000135,1.00e-16,3;CL:0000388,1.00e-16,3;CL:0000151,2.07e-11,36;CL:0002540,6.26e-09,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5662;3.54e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,3.76e-13,1 | |||
|ontology_enrichment_uberon=UBERON:0000043!2.54e-13!3;UBERON:0006915!8.60e-07!3;UBERON:0002018!8.60e-07!3;UBERON:0002217!8.60e-07!3;UBERON:0007616!8.60e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0006915;5.52e-17;3!UBERON:0007616;5.52e-17;3!UBERON:0002217;5.52e-17;3!UBERON:0002018;5.52e-17;3!UBERON:0007846;9.63e-17;3!UBERON:0000043;9.63e-17;3!UBERON:0007845;9.63e-17;3!UBERON:0001282;4.23e-13;1!UBERON:0009842;4.23e-13;1!UBERON:0003704;4.23e-13;1!UBERON:0001171;4.23e-13;1!UBERON:0001172;4.23e-13;1!UBERON:0004905;6.33e-07;8!UBERON:0000982;6.33e-07;8!UBERON:0004770;6.33e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,5.75e-17,3;UBERON:0007616,5.75e-17,3;UBERON:0002217,5.75e-17,3;UBERON:0002018,5.75e-17,3;UBERON:0007846,1.00e-16,3;UBERON:0000043,1.00e-16,3;UBERON:0007845,1.00e-16,3;UBERON:0001282,4.23e-13,1;UBERON:0009842,4.23e-13,1;UBERON:0003704,4.23e-13,1;UBERON:0001171,4.23e-13,1;UBERON:0001172,4.23e-13,1;UBERON:0002204,5.38e-07,167;UBERON:0004905,6.42e-07,8;UBERON:0000982,6.42e-07,8;UBERON:0004770,6.42e-07,8 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.61439152384566,1.50401373190767,1.88300474649071,0,1.94653948121054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,1.8720341211139,1.93220510975347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,1.2162378064119,0,6.32501818449095,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23238893691716,0.15350367472613,0,0.214840489736547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.38876723541824,4.28083360847872,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476463550915578,0.411362273086194,0.648473311192717,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0,0,0,2.16489906109302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0.554805861502613,0.568209015825267,6.28919754381438,4.44905610798268,0,0.151230923763239,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.08678416987353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.0679914901909147,0,0,1.85997509083376,54.5367241785074,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.61439152384566,1.50401373190767,1.88300474649071,0,1.94653948121054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,1.8720341211139,1.93220510975347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,1.2162378064119,0,6.32501818449095,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23238893691716,0.15350367472613,0,0.214840489736547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.38876723541824,4.28083360847872,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476463550915578,0.411362273086194,0.648473311192717,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0,0,0,2.16489906109302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0.554805861502613,0.568209015825267,6.28919754381438,4.44905610798268,0,0.151230923763239,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.08678416987353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.0679914901909147,0,0,1.85997509083376,54.5367241785074,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:203148057..203148072,+ | |short_description=p@chr1:203148057..203148072,+ | ||
}} | }} |
Latest revision as of 02:23, 28 July 2015
Short description: | p@chr1:203148057..203148072, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:203148057..203148072, + |
Coexpression cluster: | C283_tenocyte_Chondrocyte_mesenchymal_Macrophage_pleomorphic_Synoviocyte_cholangiocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 2.06e-46 | 9 |
carbohydrate secreting cell | 2.06e-46 | 9 |
macrophage | 3.43e-31 | 6 |
chondroblast | 3.43e-31 | 6 |
chondrocyte | 3.43e-31 | 6 |
extracellular matrix secreting cell | 8.70e-28 | 15 |
stromal cell | 5.69e-26 | 28 |
synovial cell | 5.75e-17 | 3 |
fibrocyte | 1.00e-16 | 3 |
tendon cell | 1.00e-16 | 3 |
secretory cell | 2.07e-11 | 36 |
mesenchymal stem cell of the bone marrow | 6.26e-09 | 6 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 5.75e-17 | 3 |
layer of synovial tissue | 5.75e-17 | 3 |
synovial joint | 5.75e-17 | 3 |
synovial membrane of synovial joint | 5.75e-17 | 3 |
dense regular connective tissue | 1.00e-16 | 3 |
tendon | 1.00e-16 | 3 |
regular connective tissue | 1.00e-16 | 3 |
intralobular bile duct | 4.23e-13 | 1 |
acinus | 4.23e-13 | 1 |
intrahepatic bile duct | 4.23e-13 | 1 |
portal lobule | 4.23e-13 | 1 |
hepatic acinus | 4.23e-13 | 1 |
musculoskeletal system | 5.38e-07 | 167 |
articulation | 6.42e-07 | 8 |
skeletal joint | 6.42e-07 | 8 |
articular system | 6.42e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 3.76e-13 | 1 |