FFCP PHASE1:Hg19::chr21:44035172..44035183,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-4bp_to_ENST00000419628,uc002zbk.1_5end | |association_with_transcript=-4bp_to_ENST00000419628,uc002zbk.1_5end | ||
|cluster_id=chr21:44035172..44035183,- | |||
|coexpression_cluster_id=C3769 | |||
|description=CAGE_peak_2_at_ENST00000419628_5end,CAGE_peak_2_at_uc002zbk.1_5end | |description=CAGE_peak_2_at_ENST00000419628_5end,CAGE_peak_2_at_uc002zbk.1_5end | ||
|id=chr21:44035172..44035183,- | |id=chr21:44035172..44035183,- | ||
|ontology_enrichment_celltype=CL:0000039!9.15e-07!7;CL:0000586!9.15e-07!7 | |ontology_enrichment_celltype=CL:0000039!9.15e-07!7;CL:0000586!9.15e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000039;3.22e-20;7!CL:0000586;3.22e-20;7!CL:0000313;1.78e-16;1!CL:0000159;6.67e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.32e-20,7;CL:0000586,2.32e-20,7;CL:0000313,3.07e-16,1;CL:0000159,8.74e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0007297;5.36e-32;2!UBERON:0005754;5.52e-17;1!UBERON:0003918;1.44e-14;10!UBERON:0007687;1.44e-14;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2152;1.78e-16;1!DOID:4468;6.67e-09;2!DOID:3095;7.78e-07;22!DOID:2994;7.78e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,3.07e-16,1;DOID:4468,6.94e-09,2;DOID:3095,7.03e-07,22;DOID:2994,7.03e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0006947!2.13e-15!3;UBERON:0004054!2.13e-15!3;UBERON:0005904!1.16e-11!4;UBERON:0004175!1.68e-10!25;UBERON:0007023!1.27e-09!115;UBERON:0001255!1.49e-09!2;UBERON:0001556!1.49e-09!2;UBERON:0003133!3.09e-09!48;UBERON:0005156!1.31e-08!59;UBERON:0000990!1.31e-08!59;UBERON:0001008!2.10e-08!45;UBERON:0000489!5.06e-08!32;UBERON:0003135!4.31e-07!11;UBERON:0006554!5.62e-07!44 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;5.52e-47;3!UBERON:0004054;5.52e-47;3!UBERON:0005904;1.87e-35;4!UBERON:0000998;5.52e-17;1!UBERON:0006868;5.52e-17;1!UBERON:0001000;7.57e-17;1!UBERON:0001301;7.57e-17;1!UBERON:0005352;7.57e-17;1!UBERON:0004911;1.78e-16;1!UBERON:0000058;1.28e-14;10!UBERON:0003135;2.39e-13;11!UBERON:0003101;1.53e-11;22!UBERON:0000079;1.53e-11;22!UBERON:0004909;6.67e-09;2!UBERON:0004175;2.94e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,6.47e-47,3;UBERON:0004054,6.47e-47,3;UBERON:0005904,2.10e-35,4;UBERON:0000998,5.53e-17,1;UBERON:0006868,5.53e-17,1;UBERON:0001000,7.57e-17,1;UBERON:0005352,7.57e-17,1;UBERON:0001301,8.86e-17,1;UBERON:0004911,3.07e-16,1;UBERON:0003135,2.50e-13,11;UBERON:0003101,1.64e-11,22;UBERON:0000079,1.64e-11,22;UBERON:0002113,7.45e-10,26;UBERON:0003918,7.45e-10,26;UBERON:0011143,7.45e-10,26;UBERON:0005095,7.45e-10,26;UBERON:0007687,7.45e-10,26;UBERON:0004909,8.74e-09,2;UBERON:0000489,2.65e-08,31;UBERON:0006554,3.23e-08,47;UBERON:0001008,4.80e-08,48;UBERON:0000058,5.88e-08,19;UBERON:0000080,7.51e-08,9;UBERON:0002120,7.51e-08,9;UBERON:0004875,7.51e-08,9;UBERON:0005721,7.51e-08,9;UBERON:0005754,7.51e-08,9;UBERON:0007297,7.51e-08,9 | |||
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| ||
|short_description=p2@ENST00000419628,p2@uc002zbk.1 | |short_description=p2@ENST00000419628,p2@uc002zbk.1 | ||
}} | }} |
Latest revision as of 18:12, 28 July 2015
Short description: | p2@ENST00000419628, p2@uc002zbk.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ENST00000419628_5end, CAGE_peak_2_at_uc002zbk.1_5end |
Coexpression cluster: | C3769_kidney_ductus_epididymis_seminal_renal_choriocarcinoma_clear |
Association with transcript: | -4bp_to_ENST00000419628, uc002zbk.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.32e-20 | 7 |
germ cell | 2.32e-20 | 7 |
serous secreting cell | 3.07e-16 | 1 |
seromucus secreting cell | 8.74e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 6.47e-47 | 3 |
internal male genitalia | 6.47e-47 | 3 |
duct of male reproductive system | 2.10e-35 | 4 |
seminal vesicle | 5.53e-17 | 1 |
seminal fluid secreting gland | 5.53e-17 | 1 |
vas deferens | 7.57e-17 | 1 |
spermatic cord | 7.57e-17 | 1 |
epididymis | 8.86e-17 | 1 |
epithelium of female gonad | 3.07e-16 | 1 |
male reproductive organ | 2.50e-13 | 11 |
male organism | 1.64e-11 | 22 |
male reproductive system | 1.64e-11 | 22 |
kidney | 7.45e-10 | 26 |
kidney mesenchyme | 7.45e-10 | 26 |
upper urinary tract | 7.45e-10 | 26 |
kidney rudiment | 7.45e-10 | 26 |
kidney field | 7.45e-10 | 26 |
epithelium of gonad | 8.74e-09 | 2 |
cavitated compound organ | 2.65e-08 | 31 |
urinary system structure | 3.23e-08 | 47 |
renal system | 4.80e-08 | 48 |
duct | 5.88e-08 | 19 |
mesonephros | 7.51e-08 | 9 |
pronephros | 7.51e-08 | 9 |
nephrogenic cord | 7.51e-08 | 9 |
pronephric mesoderm | 7.51e-08 | 9 |
rostral part of nephrogenic cord | 7.51e-08 | 9 |
presumptive pronephric mesoderm | 7.51e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 3.07e-16 | 1 |
clear cell adenocarcinoma | 6.94e-09 | 2 |
germ cell and embryonal cancer | 7.03e-07 | 22 |
germ cell cancer | 7.03e-07 | 22 |