FFCP PHASE1:Hg19::chr2:20133179..20133195,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:20133179..20133195,- | |||
|coexpression_cluster_id=C619 | |||
|description=CAGE_peak_at_chr2:20133179..20133195,- | |description=CAGE_peak_at_chr2:20133179..20133195,- | ||
|id=chr2:20133179..20133195,- | |id=chr2:20133179..20133195,- | ||
|ontology_enrichment_celltype=CL:0000066!1.65e-32!254;CL:0002076!1.06e-18!43;CL:0000076!6.65e-18!62;CL:0002368!1.09e-15!13;CL:0000223!3.72e-14!59;CL:0002139!5.07e-14!24;CL:0000220!8.75e-14!246;CL:0000213!1.42e-13!57;CL:0000215!1.42e-13!57;CL:0002321!1.68e-13!248;CL:0000115!5.99e-12!35;CL:0000071!2.65e-11!18;CL:0002546!2.65e-11!18;CL:0002202!7.08e-11!9;CL:0002632!7.08e-11!9;CL:0002078!1.93e-10!44;CL:0000082!5.26e-09!19;CL:0000063!9.66e-08!578 | |ontology_enrichment_celltype=CL:0000066!1.65e-32!254;CL:0002076!1.06e-18!43;CL:0000076!6.65e-18!62;CL:0002368!1.09e-15!13;CL:0000223!3.72e-14!59;CL:0002139!5.07e-14!24;CL:0000220!8.75e-14!246;CL:0000213!1.42e-13!57;CL:0000215!1.42e-13!57;CL:0002321!1.68e-13!248;CL:0000115!5.99e-12!35;CL:0000071!2.65e-11!18;CL:0002546!2.65e-11!18;CL:0002202!7.08e-11!9;CL:0002632!7.08e-11!9;CL:0002078!1.93e-10!44;CL:0000082!5.26e-09!19;CL:0000063!9.66e-08!578 | ||
|ontology_enrichment_celltype_v019=CL:0002202;1.56e-37;9!CL:0002632;1.56e-37;9!CL:0002368;1.07e-33;13!CL:0002328;5.96e-22;3!CL:0000307;6.86e-22;3!CL:0000082;5.51e-13;19!CL:0002139;9.79e-10;24!CL:0002076;2.11e-09;42!CL:0000115;5.94e-08;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,3.28e-37,9;CL:0002632,3.28e-37,9;CL:0002368,1.92e-33,13;CL:0002328,8.83e-22,3;CL:0000068,1.02e-21,3;CL:0000069,1.02e-21,3;CL:0000307,1.02e-21,3;CL:0000377,1.02e-21,3;CL:0000066,2.00e-15,253;CL:0002076,5.09e-15,42;CL:0000082,6.69e-13,19;CL:0000223,2.08e-10,58;CL:0002139,1.23e-09,24;CL:0000115,2.00e-08,36 | |||
|ontology_enrichment_development_v019=CL:0000377;6.86e-22;3 | |||
|ontology_enrichment_disease=DOID:305!4.36e-11!106;DOID:3908!5.78e-08!5;DOID:1749!5.79e-08!14;DOID:0050687!7.54e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!8.39e-15!72;UBERON:0000065!3.45e-12!53;UBERON:0000487!9.15e-12!22;UBERON:0004119!1.02e-11!169;UBERON:0000925!1.02e-11!169;UBERON:0006595!1.02e-11!169;UBERON:0001986!2.65e-11!18;UBERON:0004638!2.65e-11!18;UBERON:0004852!2.65e-11!18;UBERON:0004807!1.15e-10!28;UBERON:0005153!2.89e-10!37;UBERON:0008947!3.82e-10!38;UBERON:0003258!3.82e-10!38;UBERON:0000072!4.00e-10!46;UBERON:0006914!8.15e-10!25;UBERON:0001007!9.30e-10!155;UBERON:0001555!9.30e-10!155;UBERON:0007026!9.30e-10!155;UBERON:0005178!1.18e-09!34;UBERON:0002224!1.18e-09!34;UBERON:0007196!2.60e-09!14;UBERON:0001558!2.60e-09!14;UBERON:0005181!3.17e-09!35;UBERON:0004802!5.26e-09!19;UBERON:0000115!5.26e-09!19;UBERON:0005911!2.29e-08!82;UBERON:0004921!3.09e-08!129;UBERON:0004185!3.09e-08!129;UBERON:0005157!1.71e-07!51;UBERON:0001041!2.08e-07!98;UBERON:0002048!2.51e-07!22;UBERON:0000117!2.51e-07!22;UBERON:0000171!2.51e-07!22;UBERON:0000170!2.51e-07!22;UBERON:0005597!2.51e-07!22;UBERON:0000118!2.51e-07!22;UBERON:0000077!9.44e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0007196;3.19e-22;15!UBERON:0001558;3.19e-22;15!UBERON:0004815;5.96e-22;3!UBERON:0002031;5.96e-22;3!UBERON:0005178;1.18e-15;34!UBERON:0002224;1.18e-15;34!UBERON:0000490;9.37e-15;33!UBERON:0002185;2.12e-13;5!UBERON:0005181;3.91e-13;35!UBERON:0004802;5.51e-13;19!UBERON:0000115;5.51e-13;19!UBERON:0000072;8.42e-13;37!UBERON:0000065;1.28e-11;44!UBERON:0002048;3.84e-11;22!UBERON:0004807;3.84e-11;22!UBERON:0000117;3.84e-11;22!UBERON:0000171;3.84e-11;22!UBERON:0000170;3.84e-11;22!UBERON:0000485;1.03e-09;7!UBERON:0003126;1.09e-09;7!UBERON:0001005;1.09e-09;7!UBERON:0000915;1.13e-07;52!UBERON:0000487;1.39e-07;22!UBERON:0005911;6.87e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007196,4.94e-22,15;UBERON:0001558,4.94e-22,15;UBERON:0004815,8.83e-22,3;UBERON:0002031,8.83e-22,3;UBERON:0005178,2.32e-15,34;UBERON:0002224,2.32e-15,34;UBERON:0005181,7.00e-15,35;UBERON:0008947,1.35e-13,38;UBERON:0003258,1.35e-13,38;UBERON:0002185,2.67e-13,5;UBERON:0004802,6.69e-13,19;UBERON:0000115,6.69e-13,19;UBERON:0000915,9.09e-12,52;UBERON:0000065,2.23e-11,54;UBERON:0002048,4.53e-11,22;UBERON:0000117,4.53e-11,22;UBERON:0000171,4.53e-11,22;UBERON:0000170,4.53e-11,22;UBERON:0005597,4.53e-11,22;UBERON:0000118,4.53e-11,22;UBERON:0000072,1.02e-10,47;UBERON:0003126,1.29e-09,7;UBERON:0001005,1.29e-09,7;UBERON:0004807,1.40e-08,28;UBERON:0005153,1.56e-08,37;UBERON:0001004,7.57e-08,74;UBERON:0000485,1.34e-07,9;UBERON:0000487,1.62e-07,22;UBERON:0005911,7.21e-07,82 | |||
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| ||
|short_description=p@chr2:20133179..20133195,- | |short_description=p@chr2:20133179..20133195,- | ||
}} | }} |
Latest revision as of 04:51, 29 July 2015
Short description: | p@chr2:20133179..20133195, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:20133179..20133195, - |
Coexpression cluster: | C619_squamous_bile_Small_Mammary_mucinous_Tracheal_giant |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 3.28e-37 | 9 |
epithelial cell of lower respiratory tract | 3.28e-37 | 9 |
respiratory epithelial cell | 1.92e-33 | 13 |
bronchial epithelial cell | 8.83e-22 | 3 |
duct epithelial cell | 1.02e-21 | 3 |
branched duct epithelial cell | 1.02e-21 | 3 |
tracheal epithelial cell | 1.02e-21 | 3 |
tracheoblast | 1.02e-21 | 3 |
epithelial cell | 2.00e-15 | 253 |
endo-epithelial cell | 5.09e-15 | 42 |
epithelial cell of lung | 6.69e-13 | 19 |
endodermal cell | 2.08e-10 | 58 |
endothelial cell of vascular tree | 1.23e-09 | 24 |
endothelial cell | 2.00e-08 | 36 |
Ontology term | p-value | n |
---|---|---|
tracheobronchial tree | 4.94e-22 | 15 |
lower respiratory tract | 4.94e-22 | 15 |
lower respiratory tract epithelium | 8.83e-22 | 3 |
epithelium of bronchus | 8.83e-22 | 3 |
thoracic cavity element | 2.32e-15 | 34 |
thoracic cavity | 2.32e-15 | 34 |
thoracic segment organ | 7.00e-15 | 35 |
respiratory primordium | 1.35e-13 | 38 |
endoderm of foregut | 1.35e-13 | 38 |
bronchus | 2.67e-13 | 5 |
respiratory tract epithelium | 6.69e-13 | 19 |
lung epithelium | 6.69e-13 | 19 |
thoracic segment of trunk | 9.09e-12 | 52 |
respiratory tract | 2.23e-11 | 54 |
lung | 4.53e-11 | 22 |
respiratory tube | 4.53e-11 | 22 |
respiration organ | 4.53e-11 | 22 |
pair of lungs | 4.53e-11 | 22 |
lung primordium | 4.53e-11 | 22 |
lung bud | 4.53e-11 | 22 |
segment of respiratory tract | 1.02e-10 | 47 |
trachea | 1.29e-09 | 7 |
respiratory airway | 1.29e-09 | 7 |
respiratory system epithelium | 1.40e-08 | 28 |
epithelial bud | 1.56e-08 | 37 |
respiratory system | 7.57e-08 | 74 |
simple columnar epithelium | 1.34e-07 | 9 |
simple squamous epithelium | 1.62e-07 | 22 |
endo-epithelium | 7.21e-07 | 82 |