FFCP PHASE1:Hg19::chr2:55274460..55274464,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57142 | |EntrezGene=57142 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14085 | |HGNC=14085 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-438bp_to_ENST00000405240_5end | |association_with_transcript=-438bp_to_ENST00000405240_5end | ||
|cluster_id=chr2:55274460..55274464,- | |||
|description=CAGE_peak_24_at_RTN4_5end | |description=CAGE_peak_24_at_RTN4_5end | ||
|id=chr2:55274460..55274464,- | |id=chr2:55274460..55274464,- | ||
|ontology_enrichment_celltype=CL:0002057!7.96e-10!42;CL:0000766!1.42e-09!76;CL:0000860!2.63e-08!45;CL:0000557!8.33e-08!71;CL:0002009!1.83e-07!65;CL:0000738!1.90e-07!140;CL:0000839!2.08e-07!70;CL:0002194!2.15e-07!63;CL:0000576!2.15e-07!63;CL:0000040!2.15e-07!63;CL:0000559!2.15e-07!63 | |ontology_enrichment_celltype=CL:0002057!7.96e-10!42;CL:0000766!1.42e-09!76;CL:0000860!2.63e-08!45;CL:0000557!8.33e-08!71;CL:0002009!1.83e-07!65;CL:0000738!1.90e-07!140;CL:0000839!2.08e-07!70;CL:0002194!2.15e-07!63;CL:0000576!2.15e-07!63;CL:0000040!2.15e-07!63;CL:0000559!2.15e-07!63 | ||
|ontology_enrichment_celltype_v019=CL:0002393;1.48e-10;6!CL:0002397;1.48e-10;6!CL:0000775;3.80e-10;3!CL:0002605;4.17e-10;3!CL:0000094;3.31e-08;8!CL:0000222;5.39e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000775,4.18e-10,3;CL:0002605,7.51e-10,3;CL:0000766,3.38e-09,72;CL:0000094,3.24e-08,8;CL:0000738,5.12e-08,136;CL:0000473,7.47e-08,48;CL:0000234,7.47e-08,48;CL:0002393,4.24e-07,9;CL:0002397,4.24e-07,9;CL:0000860,5.58e-07,42;CL:0002057,5.58e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0005754;5.39e-08;1!UBERON:0005425;5.39e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002134;2.04e-08;1!UBERON:0005208;2.04e-08;1!UBERON:0004145;2.04e-08;1!UBERON:0005946;2.04e-08;1!UBERON:0005965;2.04e-08;1!UBERON:0002078;2.04e-08;1!UBERON:0007029;5.39e-08;1!UBERON:0002038;5.39e-08;1!UBERON:0000998;5.39e-08;1!UBERON:0000941;5.39e-08;1!UBERON:0001785;5.39e-08;1!UBERON:0002464;5.39e-08;1!UBERON:0004904;5.39e-08;1!UBERON:0006868;5.39e-08;1!UBERON:0001021;5.39e-08;1!UBERON:0009661;5.39e-08;1!UBERON:0002950;5.39e-08;1!UBERON:0001891;5.39e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002134,2.04e-08,1;UBERON:0005208,2.04e-08,1;UBERON:0005946,2.04e-08,1;UBERON:0005965,2.04e-08,1;UBERON:0002078,2.04e-08,1;UBERON:0002038,2.35e-08,1;UBERON:0009661,2.35e-08,1;UBERON:0002950,2.35e-08,1;UBERON:0001891,2.35e-08,1;UBERON:0009616,2.35e-08,1;UBERON:0010286,2.35e-08,1;UBERON:0007029,2.90e-08,1;UBERON:0000941,3.58e-08,1;UBERON:0001785,3.58e-08,1;UBERON:0002464,3.58e-08,1;UBERON:0004904,3.58e-08,1;UBERON:0001021,3.58e-08,1;UBERON:0003902,3.58e-08,1;UBERON:0005425,3.58e-08,1;UBERON:0000998,5.40e-08,1;UBERON:0006868,5.40e-08,1 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,2.0036519099174,0.684372125364421,1.00434111675842,0,0,0.157421562627358,0,0.383829398097213,0.154816123316076,0,0,0,0.0774672005803016,0.284338464974843,0.587200878669695,1.10799081706375,1.40381113229099,1.08505435357926,0.223915474239924,0,0.257575567634187,0.436194716338694,0.755751887377619,0.242584061187816,0.232429036905685,1.23350366406548,0.619412741790207,1.43846196161075,0,0,0.344745680736619,1.29096936716765,0,0.564727018627814,0.818718450173537,0,0.306083892370903,0.962787081228281,0.639337125799041,0.329851300186716,0.797854630486527,0.852449501065388,0.290209238628584,0,0,2.76373531782418,0.521482918420201,0.868755378820466,0.605399502633369,0.736555271975129,0.632924774881769,0,0,0.209658645508376,0.44931452458598,0.150176892841506,0.16072558669708,0.285012743741249,0.19891667719909,0,0,0,0,1.28019066769952,0,0,0,0,0,0,0,1.32171328579026,0,0,1.180258620683,1.17903228824749,0.822405995998037,0,0,0.473447805734733,0,0,0,0,0.270803863765016,0,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0.637130828648193,0,0,0,0,0,0,0.821127996921047,0.403213486449465,0.267440195783507,0.868946423296794,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0.378139268656271,0.665188192387692,0.263504357079378,0.0654895377488563,0,0,0.324547393654683,0.696518949197069,0,0.476981248610684,0,0.371457501329565,0.198762407366705,0,0.347140501607594,0,0,0.275118041940067,0,0.775250277507987,0.35576626268671,0.33472061276467,0,0,0,0,0,0.267899184852239,0.22452937262617,0.225222960966644,0,0,0.183201743930407,1.31780417436063,0,0,0.496971951695318,0,1.45650098894541,0.573673241497627,0,0,0,0,0,0.538842688278752,0.490385709340376,0.151357427644931,0,0,0,0,0.149448680551801,0.352303495931295,0,0.842704840213491,0.61246251376468,0.245668634623536,0.206651562351531,0,0,0,0,0.841680569770331,0.625592599359821,0,0,0,0.150238058906597,0.113432183160021,0,0.213557388818567,0,0.300091096084402,0,0.257640540045629,0,0.168776332241266,0.194874010322397,1.00973509697646,0.184099797284599,0,0.710019185033229,0.201504196455281,0.339121184620975,0.193260853163297,0.545492241181669,0,0,0,0,0.10366105501537,0,0,0,0,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0.122988438543114,0,0.109750285408626,0,0.201057944823262,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0.246217006087397,0.234004265139238,0.148631162288728,0,0,0,0.0895585227028483,0.290633938513962,0,0.492663237895943,0,0.207328115540772,0.576479813667846,0.25248486685276,0.126995788584338,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0.355391948742546,0.791951872933429,0.602878754119172,0,0.399891964728228,0,0,6.32501818449095,0.479249710983165,0,0,0.434343920002738,1.02738161275192,0.358121926479791,0.112085143993527,0.591092280605782,0.215627574859517,0.385029108839245,0.254094624222463,0,0,0,0,0.749007023947182,5.9832291840805,1.24324654030811,0.24538298343828,0,0,0,0,0.157702415033935,0.234282829985426,0,0,0,0,0.184369168541703,0.173767228936166,0,0,0,1.07857100409308,0.213455115606889,0,0,0,0.248107807818777,0,0,0.128139149255701,0,0.160853921143607,0,0.308419387605311,0,0,0,0,0.120859449591622,0.200506470303285,0,0.34444334449382,0.182091168006717,0.393373244878272,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.515205058238611,0.0915694648183434,0.165018999841176,0,0,0,0.193341436584244,0.154048617114644,0.307007349452259,0.413509717453592,0.322260734604821,0.725083469571143,0.0852266274161009,0.178064071293475,0,0,0.510450849978337,0,0,0.94443704049192,0,0,0,0,0,0.286249773483982,0.372158369359667,0.316379424718726,0,0,0.42793898803392,0,0,0.179872457583315,0.823611089208164,0.235624804691373,0,0,0,0,0,0,0.272999822815972,0.707027159768564,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0.349934720244983,0.0962221127255121,0,0,0.470719003883896,0,0,0,0,0,0.764637207142375,0.569647187174163,0.952927101831156,0,0,0.540031437238115,0,0.106824071127473,0,0.735120647943095,0.185803175125719,0.144269212976445,0.640276590135727,0,0.199579371432817,0,0.423347165447766,0,0.280797178113459,0.456469358066384,0,0,0.169291777801603,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0.18714054040822,0,0,0.222886768554957,0,0,0,0.307160702099232,0,0.140669416410513,0.779160935160341,0,0,0.597743964753209,0.276283915531148,0.251932747854276,0.409074730008619,0,0,0.179736702294654,0,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0.0874599999961957,0,0.1137934482855,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0.295547618953547,0,0.10893846351899,0,0.307801034015188,0,0.23056390438806,0,0.108647371922008,0.31900115973192,0,0.533034776018635,0,0,0.166211681900156,0.225595660617181,0,0,0.75901493089674,0,0.210998064528027,0.163232808159148,0.141353071433941,0.216388639742091,0,0.0884575645033392,0.611030144933625,0.296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| ||
|short_description=p24@RTN4 | |short_description=p24@RTN4 | ||
}} | }} |
Latest revision as of 16:52, 17 September 2015
Short description: | p24@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_24_at_RTN4_5end |
Coexpression cluster: | NA |
Association with transcript: | -438bp_to_ENST00000405240_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neutrophil | 4.18e-10 | 3 |
astrocyte of the cerebral cortex | 7.51e-10 | 3 |
myeloid leukocyte | 3.38e-09 | 72 |
granulocyte | 3.24e-08 | 8 |
leukocyte | 5.12e-08 | 136 |
defensive cell | 7.47e-08 | 48 |
phagocyte | 7.47e-08 | 48 |
intermediate monocyte | 4.24e-07 | 9 |
CD14-positive, CD16-positive monocyte | 4.24e-07 | 9 |
classical monocyte | 5.58e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.58e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
tricuspid valve | 2.04e-08 | 1 |
right atrium valve | 2.04e-08 | 1 |
outflow tract of atrium | 2.04e-08 | 1 |
outflow part of right atrium | 2.04e-08 | 1 |
right cardiac atrium | 2.04e-08 | 1 |
substantia nigra | 2.35e-08 | 1 |
midbrain nucleus | 2.35e-08 | 1 |
regional part of midbrain | 2.35e-08 | 1 |
midbrain | 2.35e-08 | 1 |
presumptive midbrain | 2.35e-08 | 1 |
midbrain neural tube | 2.35e-08 | 1 |
surface | 2.90e-08 | 1 |
cranial nerve II | 3.58e-08 | 1 |
cranial nerve | 3.58e-08 | 1 |
nerve trunk | 3.58e-08 | 1 |
nerve connecting eye with brain | 3.58e-08 | 1 |
nerve | 3.58e-08 | 1 |
retinal neural layer | 3.58e-08 | 1 |
presumptive neural retina | 3.58e-08 | 1 |
seminal vesicle | 5.40e-08 | 1 |
seminal fluid secreting gland | 5.40e-08 | 1 |