FFCP PHASE1:Hg19::chr12:54402729..54402743,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:54402729..54402743,+
|short_description=p3@HOXC8
|description=CAGE_peak_3_at_HOXC8_5end
|association_with_transcript=-88bp_to_ENST00000040584_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3224 | |EntrezGene=3224 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5129 | |HGNC=5129 | ||
|TSSclassifier=strong | |||
|UniProt=P31273 | |UniProt=P31273 | ||
|association_with_transcript=-88bp_to_ENST00000040584_5end | |||
|cluster_id=chr12:54402729..54402743,+ | |||
|coexpression_cluster_id=C1362 | |||
|description=CAGE_peak_3_at_HOXC8_5end | |||
|id=chr12:54402729..54402743,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.39e-16!180;CL:0002334!2.97e-13!12;CL:0000136!8.41e-13!15;CL:0000057!3.35e-12!75;CL:0002620!4.47e-12!23;CL:0002570!4.13e-09!8;CL:0000188!4.34e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002334;6.55e-25;12!CL:0002570;2.76e-16;8!CL:0002620;3.23e-14;23!CL:0000136;4.95e-13;13!CL:0000057;5.02e-09;73!CL:0002580;2.13e-08;3!CL:0002579;8.96e-08;3!CL:0002615;1.95e-07;3!CL:0002564;1.95e-07;3!CL:0000680;3.12e-07;7!CL:0002320;3.44e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,8.53e-25,12;CL:0000057,2.86e-21,76;CL:0000136,1.17e-16,15;CL:0002570,1.49e-16,8;CL:0002620,3.68e-14,23;CL:0002320,1.51e-09,361;CL:0000048,5.76e-09,427;CL:0000723,1.33e-08,433;CL:0002580,2.14e-08,3;CL:0000034,3.90e-08,441;CL:0002579,9.20e-08,3;CL:0002564,1.90e-07,3;CL:0002615,2.46e-07,3;CL:0000134,2.81e-07,354 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!9.25e-09!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002199!2.35e-13!45;UBERON:0002416!2.35e-13!45;UBERON:0001013!4.03e-12!14;UBERON:0002097!6.81e-11!40;UBERON:0003688!1.55e-07!6;UBERON:0002358!1.55e-07!6;UBERON:0003684!1.55e-07!6;UBERON:0001178!1.55e-07!6;UBERON:0002384!6.87e-07!375;UBERON:0002100!7.83e-07!216;UBERON:0003886!9.25e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;3.61e-20;14!UBERON:0003688;1.53e-13;6!UBERON:0002358;1.53e-13;6!UBERON:0003684;1.53e-13;6!UBERON:0001178;1.53e-13;6!UBERON:0011135;4.07e-11;5!UBERON:0002216;4.07e-11;5!UBERON:0011134;4.07e-11;5!UBERON:0002209;4.07e-11;5!UBERON:0002213;4.07e-11;5!UBERON:0007844;4.07e-11;5!UBERON:0011138;4.07e-11;5!UBERON:0001130;4.07e-11;5!UBERON:0001066;4.07e-11;5!UBERON:0001468;4.07e-11;5!UBERON:0002199;6.64e-09;46!UBERON:0002416;6.64e-09;46!UBERON:0004457;1.02e-08;9!UBERON:0000042;1.02e-08;9!UBERON:0002097;3.67e-08;41!UBERON:0002242;1.95e-07;3!UBERON:0003102;1.97e-07;50!UBERON:0002072;2.17e-07;5!UBERON:0004905;9.23e-07;8!UBERON:0000982;9.23e-07;8!UBERON:0004770;9.23e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001013,1.98e-20,14;UBERON:0002199,1.16e-15,46;UBERON:0002416,1.16e-15,46;UBERON:0003688,1.97e-13,6;UBERON:0002358,1.97e-13,6;UBERON:0003684,1.97e-13,6;UBERON:0001178,1.97e-13,6;UBERON:0002384,2.02e-12,371;UBERON:0002097,2.57e-11,41;UBERON:0011135,3.85e-11,5;UBERON:0002216,3.85e-11,5;UBERON:0011134,3.85e-11,5;UBERON:0002209,3.85e-11,5;UBERON:0002213,3.85e-11,5;UBERON:0005856,3.85e-11,5;UBERON:0005866,3.85e-11,5;UBERON:0005863,3.85e-11,5;UBERON:0007844,3.85e-11,5;UBERON:0011138,3.85e-11,5;UBERON:0001130,3.85e-11,5;UBERON:0001066,3.85e-11,5;UBERON:0001468,3.85e-11,5;UBERON:0002242,1.90e-07,3;UBERON:0003068,1.90e-07,3;UBERON:0002328,1.90e-07,3;UBERON:0004880,1.90e-07,3;UBERON:0002072,2.21e-07,5;UBERON:0004905,8.92e-07,8;UBERON:0000982,8.92e-07,8;UBERON:0004770,8.92e-07,8 | |||
|phase1_expression=11.2640595147745,10.4909256706582,3.24195129420734,6.00439790118782,2.23480547213644,6.10636966870258,0,3.15859936713415,4.70134130759709,0,0,0,0,2.59909341216098,3.31397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,0.869079113764942,0,0.486634870302636,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,0.12663051166458,0.397227542439656,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54062756938062,2.46612447151906,3.0755859429945,2.80901613404497,0,0,0,0,0,9.10161361938026,9.3420358436111,0,0,0,0,0,0,0.113432183160021,0.179389635688862,1.06778694409284,0.423863802319124,0.900273288253207,1.54578793857658,1.8034837803194,2.79175284497385,5.56961896396179,7.1129013767675,1.00973509697646,2.76149695926898,0,1.42003837006646,1.20902517873168,0.67824236924195,0,0,0,0,0,0.116193942869518,0,0,0.36497735907583,0,0,0,2.3218396401599,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0.219500570817251,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0.53735113621709,0.871901815541886,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0.300343057843917,0.285826432630578,0,0,0,2.97324946242889,7.15312891703765,1.690605505112,0,0,0.514414748524284,4.25547396069835,1.0656887160644,0.142977993658148,9.76718889704597,7.40916303102692,1.95441710576241,0.355391948742546,1.58390374586686,0.602878754119172,0,1.29964888536674,0,0,0,0,0,1.42636905040718,4.1986578933598,0.410952645100767,5.72995082367666,0,0,0,0,0,0,0,0,0,0,0,0,6.87072353627183,2.50085260529839,3.52644530809656,0,0,0,0,0.300946099727719,0,1.03473071292505,0.664225598535437,0.368738337083406,0,0,0,0,0,0,0,0,0,13.8940372378515,13.5046536493495,14.5943249105198,3.07533958213682,9.72243773226737,4.98647155545183,2.96836132889982,3.70103265126373,2.48586415438378,2.87445046048332,1.03850885836724,2.32420756919918,0.120859449591622,0,0,0,0,0,0,0.15403067420883,1.56869953835371,1.46139224653261,0.211103257785751,0,0,0.431831832204279,0,1.35473218771926,0.501689773854853,0,0,0.447749509444357,0,0,0,0,0,0.206082023295445,0.183138929636687,0.165018999841176,0.574265537996172,1.30012049207304,0,0.386682873168488,0.616194468458578,0.460511024178389,0.827019434907183,1.18162269355101,0.725083469571143,1.87498580315422,0.445160178233687,0,0,0,0,0,0,0,1.84820148105653,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0.202182481573316,0,0,0,1.46228093778771,4.22600587027022,0,0,1.13008116620243,0,0,0,0.578775534266688,0,0.405820753925408,0,0.563391205064483,7.17056761020257,5.99319150180039,1.07001315444375,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854592569019785,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0.849523652246594,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20453736500431,0,0,0.269605053441981,0,0,0,0,4.44547960578548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0.208843899010911,0,0.802577647298789,0,0,0,0.728341138602278,0,0,0,0,0.150323419414493,0.207376382794494,0.664653872707185,0.330991955875499,0,1.19472429772959,0.284609546029793,0,0,0,0,0.873633341210151,0.51595809741485,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0.572682980829578,0,0,0.99402028452346,0,0,0,0.305994652908965,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44119953416961,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.551639951094387,0.314727528809989,0,0,0,0,0,3.30549098951175,0,0,0.326587360109409,0,0,3.74853647927928,1.13312091520126,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0.544017803369474,0.7520696820681,3.06345576763462,0.327872630709804,0.157054096250234,0,0,0,0,0,0,0.138348634936231,0,1.21319294033318,0.285465333544967,0,0,0,3.28360566351123,3.97312626740282,1.10961172300523,0,0.754703705257725,0,0,0.302461847526478,0.15543720058278,0,1.27437413730962,0.449803112163605,0.931577741257556,4.14706207840855,0.53168342911599,0.521745061811734,0.450772826991655,0.380805212168795,0.813741466409323,1.09109195521536,0.644463342254931,1.85613503951397,0.796191777397232,0.400027764663154,4.8075398725591,7.40848875285022,0,0,0,0,0.453411851024545,0.926089897295336,0.489473409012935,0,0,0.877136198314828,1.06013487567529,0.192914038270915,0,0,0,0,0,0,0,0,0.655219697692825,0,0,0,0,0,0,0.552317850755522,0,1.24415452006595,0.255788742607303,0.107824811396682,0,0.218419276384028,0,0.212574920101683,0,0.558644917973244,0.636008701306837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0.690359926060101,0.795664888465099,3.45967510406583,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0.118193840883968,0.111231401892069,0,0,0,0,0,0,0,0,1.74362138052188,1.04314963381548,0,0,0,0,0,0.828324005113957,0.511280428554946,0,0,0,0.9555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| ||
|short_description=p3@HOXC8 | |||
}} | }} |
Latest revision as of 04:51, 19 September 2015
Short description: | p3@HOXC8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HOXC8_5end |
Coexpression cluster: | C1362_Preadipocyte_Adipocyte_Fibroblast_Mesenchymal_mesenchymal_Myoblast_Smooth |
Association with transcript: | -88bp_to_ENST00000040584_5end |
EntrezGene: | HOXC8 |
HGNC: | 5129 |
UniProt: | P31273 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 8.53e-25 | 12 |
fibroblast | 2.86e-21 | 76 |
fat cell | 1.17e-16 | 15 |
mesenchymal stem cell of adipose | 1.49e-16 | 8 |
skin fibroblast | 3.68e-14 | 23 |
connective tissue cell | 1.51e-09 | 361 |
multi fate stem cell | 5.76e-09 | 427 |
somatic stem cell | 1.33e-08 | 433 |
preadipocyte of the breast | 2.14e-08 | 3 |
stem cell | 3.90e-08 | 441 |
omentum preadipocyte | 9.20e-08 | 3 |
nucleus pulposus cell of intervertebral disc | 1.90e-07 | 3 |
adipocyte of omentum tissue | 2.46e-07 | 3 |
mesenchymal cell | 2.81e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
adipose tissue | 1.98e-20 | 14 |
integument | 1.16e-15 | 46 |
integumental system | 1.16e-15 | 46 |
omentum | 1.97e-13 | 6 |
peritoneum | 1.97e-13 | 6 |
abdominal cavity | 1.97e-13 | 6 |
visceral peritoneum | 1.97e-13 | 6 |
connective tissue | 2.02e-12 | 371 |
skin of body | 2.57e-11 | 41 |
intervertebral cartilage | 3.85e-11 | 5 |
symphysis | 3.85e-11 | 5 |
nonsynovial joint | 3.85e-11 | 5 |
fibrous joint | 3.85e-11 | 5 |
cartilaginous joint | 3.85e-11 | 5 |
developing mesenchymal condensation | 3.85e-11 | 5 |
pre-cartilage condensation | 3.85e-11 | 5 |
cartilaginous condensation | 3.85e-11 | 5 |
cartilage element | 3.85e-11 | 5 |
post-cranial axial skeletal system | 3.85e-11 | 5 |
vertebral column | 3.85e-11 | 5 |
intervertebral disk | 3.85e-11 | 5 |
intervertebral joint | 3.85e-11 | 5 |
nucleus pulposus | 1.90e-07 | 3 |
axial mesoderm | 1.90e-07 | 3 |
notochord | 1.90e-07 | 3 |
chordamesoderm | 1.90e-07 | 3 |
hypodermis | 2.21e-07 | 5 |
articulation | 8.92e-07 | 8 |
skeletal joint | 8.92e-07 | 8 |
articular system | 8.92e-07 | 8 |